RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5554
(272 letters)
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 54.9 bits (132), Expect = 3e-09
Identities = 23/181 (12%), Positives = 37/181 (20%), Gaps = 15/181 (8%)
Query: 13 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 72
L N + L N L R+ + + + + + C+
Sbjct: 32 LENHLYQQIDLPNQEVRNLVFRDAV-----FDHLSLANGQFASFDCSNVRFEACD----- 81
Query: 73 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 132
N CN G + +C R N +
Sbjct: 82 FSNVEWLSGSFHRVT-----FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVH 136
Query: 133 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 192
L L C+ N + GL L GL
Sbjct: 137 FNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLX 196
Query: 193 L 193
+
Sbjct: 197 V 197
Score = 54.9 bits (132), Expect = 3e-09
Identities = 23/181 (12%), Positives = 37/181 (20%), Gaps = 15/181 (8%)
Query: 23 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 82
L N + L N L R+ + + + + + C+
Sbjct: 32 LENHLYQQIDLPNQEVRNLVFRDAV-----FDHLSLANGQFASFDCSNVRFEACD----- 81
Query: 83 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 142
N CN G + +C R N +
Sbjct: 82 FSNVEWLSGSFHRVT-----FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVH 136
Query: 143 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 202
L L C+ N + GL L GL
Sbjct: 137 FNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLX 196
Query: 203 L 203
+
Sbjct: 197 V 197
Score = 54.9 bits (132), Expect = 3e-09
Identities = 23/181 (12%), Positives = 37/181 (20%), Gaps = 15/181 (8%)
Query: 33 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 92
L N + L N L R+ + + + + + C+
Sbjct: 32 LENHLYQQIDLPNQEVRNLVFRDAV-----FDHLSLANGQFASFDCSNVRFEACD----- 81
Query: 93 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 152
N CN G + +C R N +
Sbjct: 82 FSNVEWLSGSFHRVT-----FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVH 136
Query: 153 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 212
L L C+ N + GL L GL
Sbjct: 137 FNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLX 196
Query: 213 L 213
+
Sbjct: 197 V 197
Score = 54.9 bits (132), Expect = 3e-09
Identities = 23/181 (12%), Positives = 37/181 (20%), Gaps = 15/181 (8%)
Query: 53 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 112
L N + L N L R+ + + + + + C+
Sbjct: 32 LENHLYQQIDLPNQEVRNLVFRDAV-----FDHLSLANGQFASFDCSNVRFEACD----- 81
Query: 113 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 172
N CN G + +C R N +
Sbjct: 82 FSNVEWLSGSFHRVT-----FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVH 136
Query: 173 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 232
L L C+ N + GL L GL
Sbjct: 137 FNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLX 196
Query: 233 L 233
+
Sbjct: 197 V 197
Score = 54.1 bits (130), Expect = 5e-09
Identities = 22/178 (12%), Positives = 35/178 (19%), Gaps = 15/178 (8%)
Query: 63 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 122
L N + L N L R+ + + + + + C+
Sbjct: 32 LENHLYQQIDLPNQEVRNLVFRDAV-----FDHLSLANGQFASFDCSNVRFEACD----- 81
Query: 123 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 182
N CN G + +C R N +
Sbjct: 82 FSNVEWLSGSFHRVT-----FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVH 136
Query: 183 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGG 240
L L C+ N + GL L G
Sbjct: 137 FNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSG 194
Score = 53.0 bits (127), Expect = 1e-08
Identities = 19/168 (11%), Positives = 39/168 (23%)
Query: 6 APISTKGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRN 65
A + + + +RN + + + + + C+ + +
Sbjct: 30 AILENHLYQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLS 89
Query: 66 CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRN 125
+ + CN G + +C R N +
Sbjct: 90 GSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFE 149
Query: 126 CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 173
L L C+ N + GL L GL +
Sbjct: 150 VTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGLXV 197
Score = 52.2 bits (125), Expect = 2e-08
Identities = 22/179 (12%), Positives = 36/179 (20%), Gaps = 16/179 (8%)
Query: 73 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 132
L N + L N L R+ + + + + + C+
Sbjct: 32 LENHLYQQIDLPNQEVRNLVFRDAV-----FDHLSLANGQFASFDCSNVRFEACD----- 81
Query: 133 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 192
N CN G + +C R N +
Sbjct: 82 FSNVEWLSGSFHRVT-----FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVH 136
Query: 193 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLIVPKSK-RGA 250
L L C+ N + GL L + G
Sbjct: 137 FNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSGL 195
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras
cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB:
3psz_A
Length = 216
Score = 48.2 bits (115), Expect = 6e-07
Identities = 38/209 (18%), Positives = 59/209 (28%), Gaps = 6/209 (2%)
Query: 43 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN-TGGL 101
+ + G+ + G + C CN L L C +
Sbjct: 2 IXDXCFEGVRFEQQDLEGEQFQGCR-----FIGCNFSWLDLAECRFVDCSFYDRESEQSC 56
Query: 102 GLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGL 161
L+ C+ C+ GL LR+C G+ +
Sbjct: 57 LLQGCDLREASFLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEA 116
Query: 162 GLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGL 221
L N C L G L + G L G + + N G
Sbjct: 117 HLTGNNFSYANFEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQGC 176
Query: 222 GLRNCNTGGLGLRNCNTGGLIVPKSKRGA 250
LR C+ GL LR N G+ + + ++ A
Sbjct: 177 DLRQCDLPGLDLRRVNLDGVQINEDQQQA 205
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 37.4 bits (86), Expect = 0.005
Identities = 22/212 (10%), Positives = 42/212 (19%), Gaps = 31/212 (14%)
Query: 20 GLGLRNCNTGGLGLRNCNTGGLGLRNCN-TGGLGLRNCNTGGLGLRNCNTGGLGLRNCNT 78
LR L + + RN + L G ++ N N
Sbjct: 24 DAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFN-----FSNSKF 78
Query: 79 GGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNT 138
+ + + C L + N +
Sbjct: 79 TYSDISHLH-----FDECR-----FTYST-----LSDVV-----CSNTKFSNSDMNEVFL 118
Query: 139 GGLGLRNCNTGGLGLRNCNTGGLGLRN-CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 197
+ +R+ N G+ L + + + L +
Sbjct: 119 QYSITTQQQ---PSFIDTTLKNTLIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIW 175
Query: 198 T-GGLGLRNCNTGGLGLRNCNTGGLGLRNCNT 228
L G N G L ++
Sbjct: 176 LQMPLLWTENAVDGFLNHEHNNGKSILMTIDS 207
Score = 36.6 bits (84), Expect = 0.007
Identities = 22/209 (10%), Positives = 42/209 (20%), Gaps = 31/209 (14%)
Query: 13 LRNCNTGGLGLRNCNTGGLGLRNCN-TGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGL 71
LR L + + RN + L G ++ N N
Sbjct: 27 LRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFN-----FSNSKFTYS 81
Query: 72 GLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGL 131
+ + + C L + N +
Sbjct: 82 DISHLH-----FDECR-----FTYST-----LSDVV-----CSNTKFSNSDMNEVFLQYS 121
Query: 132 GLRNCNTGGLGLRNCNTGGLGLRN-CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNT-G 189
+ +R+ N G+ L + + + L +
Sbjct: 122 ITTQQQ---PSFIDTTLKNTLIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIWLQM 178
Query: 190 GLGLRNCNTGGLGLRNCNTGGLGLRNCNT 218
L G N G L ++
Sbjct: 179 PLLWTENAVDGFLNHEHNNGKSILMTIDS 207
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral
beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Length = 200
Score = 33.3 bits (77), Expect = 0.043
Identities = 15/151 (9%), Positives = 32/151 (21%), Gaps = 11/151 (7%)
Query: 93 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 152
+ + + + +C R CN L C
Sbjct: 1 MPAKTLESKDYCGESFVSEDRSGQSLESIRFEDCT-----FRQCNFTEAELNRCKFRECE 55
Query: 153 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN------TGGLGLRNCNTGGLGLRNC 206
+CN + + + + +C G+ + G L C
Sbjct: 56 FVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGL 115
Query: 207 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 237
G+ + C + +
Sbjct: 116 YLAGVKMVECRIHDANFTEADCEDADFTQSD 146
Score = 32.1 bits (74), Expect = 0.11
Identities = 13/140 (9%), Positives = 31/140 (22%), Gaps = 6/140 (4%)
Query: 13 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN-TGGLGLRNCNTGGL 71
+CN + + + + +C G+ + + G L C
Sbjct: 56 FVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQ-----WPSVKMEGALSFERCILNDS 110
Query: 72 GLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGL 131
G+ + C + + G N G + +
Sbjct: 111 LFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNTKLTGASFIDAVNYHI 170
Query: 132 GLRNCNTGGLGLRNCNTGGL 151
+ + + L
Sbjct: 171 DIFHNDIKRARFSLPEAASL 190
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 31.8 bits (71), Expect = 0.26
Identities = 29/179 (16%), Positives = 48/179 (26%), Gaps = 8/179 (4%)
Query: 67 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNC 126
G + + G + G G RN + G G
Sbjct: 252 RGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTG-GTATWKPGSSGPG 310
Query: 127 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRN---CNTGGLGL 183
+TG + TG G +N + G +TG + G G +G G
Sbjct: 311 STGSWNSGSSGTGSTGNQNPGSPRPG----STGTWNPGSSERGSAGHWTSESSVSGSTGQ 366
Query: 184 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLI 242
+ +G + +G N + G + N R +T L +
Sbjct: 367 WHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHTEKLVTSKGDKELRT 425
Score = 31.4 bits (70), Expect = 0.35
Identities = 29/169 (17%), Positives = 47/169 (27%), Gaps = 8/169 (4%)
Query: 37 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNC 96
G + + G + G G RN + G G
Sbjct: 252 RGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTG-GTATWKPGSSGPG 310
Query: 97 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRN---CNTGGLGL 153
+TG + TG G +N + G +TG + G G +G G
Sbjct: 311 STGSWNSGSSGTGSTGNQNPGSPRPG----STGTWNPGSSERGSAGHWTSESSVSGSTGQ 366
Query: 154 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 202
+ +G + +G N + G + N R +T L
Sbjct: 367 WHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHTEKLV 415
Score = 31.0 bits (69), Expect = 0.40
Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 8/173 (4%)
Query: 77 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNC 136
G + + G + G G RN + G G
Sbjct: 252 RGGSTSYGTGSETESPRNPSSAGSWNSGSSGPGSTGNRNPGSSGTG-GTATWKPGSSGPG 310
Query: 137 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRN---CNTGGLGL 193
+TG + TG G +N + G +TG + G G +G G
Sbjct: 311 STGSWNSGSSGTGSTGNQNPGSPRPG----STGTWNPGSSERGSAGHWTSESSVSGSTGQ 366
Query: 194 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLIVPKS 246
+ +G + +G N + G + N R +T L+ K
Sbjct: 367 WHSESGSFRPDSPGSGNARPNNPDWGTFEEVSGNVSPGTRREYHTEKLVTSKG 419
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide
repeat protein, fluroquinolone resistance, DNA gyrase,
DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP:
b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Length = 186
Score = 30.1 bits (69), Expect = 0.48
Identities = 28/165 (16%), Positives = 42/165 (25%), Gaps = 10/165 (6%)
Query: 63 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 122
+C G R+ + L C+ G+ L G RNC
Sbjct: 7 WVDCEFTGRDFRDEDLSRLHTERAM-----FSECDFSGVNLAESQHRGSAFRNCT----- 56
Query: 123 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 182
C+ G C L L + + L + GL L C
Sbjct: 57 FERTTLWHSTFAQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETS 116
Query: 183 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 227
L + + LR + G LR + R +
Sbjct: 117 LVDTDLRKCVLRGADLSGARTTGARLDDADLRGATVDPVLWRTAS 161
>3du1_X ALL3740 protein, HETL; right-handed beta helix, repeated five
residue fold, pentape repeat protein, structural
protein; 2.00A {Nostoc SP}
Length = 257
Score = 27.5 bits (62), Expect = 4.6
Identities = 43/225 (19%), Positives = 58/225 (25%), Gaps = 12/225 (5%)
Query: 13 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 72
LR+ G ++ N + L N + G L + LR G +
Sbjct: 27 LRHYAAGKRNFQHINLQEIELTNASLTGADLSYAD-----LRQTRLGKSNFSHTCLREAD 81
Query: 73 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 132
L G+ L + LR + G L L + L N
Sbjct: 82 LSEAILWGIDLSEADLYRAILREADLTGAKLVKTRLEEANLIKAS-----LCGANLNSAN 136
Query: 133 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLG 192
L C LR + L G L + L + N G L N G
Sbjct: 137 LSRCLLFQADLRPSSNQRTDLGYVLLTGADLSYADLRAASLHHANLDGAKLCRANFGRTI 196
Query: 193 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 237
L + G L N LR N G L
Sbjct: 197 QWGNL--AADLSGASLQGADLSYANLESAILRKANLQGADLTGAI 239
>2xty_A QNRB1; cell cycle, pentapeptide repeat, PRP, antibiotic resistance,
handed quadrilateral beta-helix; 1.80A {Klebsiella
pneumoniae} PDB: 2xtw_A 2xtx_A
Length = 217
Score = 27.0 bits (61), Expect = 5.6
Identities = 22/164 (13%), Positives = 39/164 (23%), Gaps = 6/164 (3%)
Query: 75 NCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN-TGGLGLRNCNTGGLGL 133
G + G + N + G C + CN L
Sbjct: 5 ALALVGEKIDRNRFTGEKIENSTFFNCDFSGADLSGTEFIGCQFYDRESQKGCNFSRAML 64
Query: 134 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 193
++ ++C+ RN + G+ +R+C G R + + +
Sbjct: 65 KDAI-----FKSCDLSMADFRNSSALGIEIRHCRAQGADFRGASFMNMITTRTWFCSAYI 119
Query: 194 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 237
N N L G + G L
Sbjct: 120 TNTNLSYANFSKVVLEKCELWENRWIGAQVLGATFSGSDLSGGE 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.145 0.478
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,248,754
Number of extensions: 275536
Number of successful extensions: 497
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 27
Length of query: 272
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 180
Effective length of database: 4,133,061
Effective search space: 743950980
Effective search space used: 743950980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.5 bits)