RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5554
         (272 letters)



>d2bm5a1 b.80.8.1 (A:2-182) Hypothetical protein Rv3361c (MT3469)
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 181

 Score = 27.3 bits (59), Expect = 1.7
 Identities = 23/154 (14%), Positives = 35/154 (22%)

Query: 14  RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 73
            +C   G   R+ +   L               N      R                   
Sbjct: 4   VDCEFTGRDFRDEDLSRLHTERAMFSECDFSGVNLAESQHRGSAFRNCTFERTTLWHSTF 63

Query: 74  RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGL 133
             C+  G     C    L L + +     L   +  GL L  C      L + +     L
Sbjct: 64  AQCSMLGSVFVACRLRPLTLDDVDFTLAVLGGNDLRGLNLTGCRLRETSLVDTDLRKCVL 123

Query: 134 RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 167
           R  +  G            LR      +  R  +
Sbjct: 124 RGADLSGARTTGARLDDADLRGATVDPVLWRTAS 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.145    0.478 

Gapped
Lambda     K      H
   0.267   0.0491    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,064,884
Number of extensions: 54195
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 74
Length of query: 272
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 188
Effective length of database: 1,254,276
Effective search space: 235803888
Effective search space used: 235803888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.4 bits)