BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5555
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 96/188 (51%), Gaps = 20/188 (10%)
Query: 13 QEDVERLNVLYEQNWTTLVTEQLRRFESNVIEMSSQLGYNGRDPADKDRQWSFSGALLYS 72
++++ +L + + L +QL +F V+E +S G + A + W F+ AL ++
Sbjct: 43 RQELRKLKRRFLEEHECLSEQQLEQFLGRVLE-ASNYGVSVLSQASGNWNWDFTSALFFA 101
Query: 73 VTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS----------LLADTFQ 122
TV++T GYG+ P + GK ++Y++ GIP LL ++ + +L +
Sbjct: 102 STVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIR 161
Query: 123 FTYSHSCCASRQK--------SGYICIGAGVFAAWE-EWSFLDGAYFCFVTLSTIGFGDL 173
+ +S A S + I A VF+ E +W+FL+ YFCF++LSTIG GD
Sbjct: 162 WGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDY 221
Query: 174 VPGKSFQR 181
VPG+ + +
Sbjct: 222 VPGEGYNQ 229
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 74/161 (45%), Gaps = 27/161 (16%)
Query: 42 VIEMSSQLGYNGRDP------ADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVT 95
+ E++ LG G DP W A +S T+ITTIGYGN+A +T G++
Sbjct: 88 IKEVADALG-GGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFC 146
Query: 96 MVYALFGIPLMLLCISNLGSLLADTFQFTYSHSCCA----------SRQKSGYICIGAG- 144
+ YAL GIPL + ++ +G L + + H R S + + G
Sbjct: 147 IFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGC 206
Query: 145 ---------VFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPG 176
VF E+WS L+ YF VTL+T+GFGD V G
Sbjct: 207 LLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAG 247
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+GYGN +P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 142 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
G ++ E +D YF VTL+T+G+G+ P F + T
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGNFSPQTDFGKIFT 63
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+GYG+ +P+T GKI T++Y GI L+ I L
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 142 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
G ++ E +D +F VTL+T+G+GD P F + T
Sbjct: 21 GTIFYSTVEGLRPIDALFFSVVTLTTVGYGDFSPQTDFGKIFT 63
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+GYG+ +P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 31.2 bits (69), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 142 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
G ++ E +D YF VTL+T+G+GD P F + T
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFT 63
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+GYG+ +P+T GKI T++Y GI L+ I L
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 155 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
+D +F VTL+T+G+GD P F + T
Sbjct: 34 IDALWFSVVTLTTVGYGDFSPQTDFGKIFT 63
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+GYG +P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 142 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
G ++ E +D YF VTL+T+G+G+ P F + T
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGYGEFSPQTDFGKIFT 63
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G GN +P+T GK+ T++Y GI L+ I L
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLA 102
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 155 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
LD YF VTL+T+G G+ P F + T
Sbjct: 54 LDALYFSVVTLTTVGDGNFSPQTDFGKVFT 83
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +++ TT+GYG++ P TPIG+I+ + LFGI
Sbjct: 43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGI 82
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 145 VFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQR 181
VF E ++ D ++ VT +T+G+GD+VP R
Sbjct: 35 VFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGR 71
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G+G+ +P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 142 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
G ++ E +D YF VTL+T+GFGD P F + T
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGFGDFSPQTDFGKIFT 63
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G GN +P+T GKI T++Y GI L+ I L
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 155 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
+D YF VTL+T+G G+ P F + T
Sbjct: 51 IDALYFSVVTLTTVGAGNFSPQTDFGKIFT 80
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G GN +P+T GKI T++Y GI L+ I L
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 155 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
+D YF VTL+T+G G+ P F + T
Sbjct: 51 IDALYFSVVTLTTVGEGNFSPQTDFGKIFT 80
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G GN +P+T GKI T++Y GI L+ I L
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G GN +P+T GKI T++Y GI L+ I L
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSL 116
AL ++V TT+GYG++ P TPIGK++ + L GI + L I + ++
Sbjct: 181 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 229
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182
S D ++ VT +T+G+GD+VP +
Sbjct: 177 SVFDALWWAVVTATTVGYGDVVPATPIGKV 206
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G GN +P+T GKI T++Y GI L+ I L
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 142 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
G ++ E +D YF VTL+T+G G+ P F + T
Sbjct: 38 GTIFYSTVEGLRPIDALYFSVVTLTTVGNGNFSPQTDFGKIFT 80
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSL 116
AL ++V TT+GYG++ P TPIGK++ + L GI + L I + ++
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNM 217
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182
S D ++ VT +T+G+GD+VP +
Sbjct: 165 SVFDALWWAVVTATTVGYGDVVPATPIGKV 194
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G GN P+T GKI T++Y GI L+ I L
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGLVFGFIHKLA 99
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 155 LDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
+D YF VTL+T+G G+ P F + T
Sbjct: 51 IDALYFSVVTLTTVGAGNFEPQTDFGKIFT 80
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G G+ +P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLA 82
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 142 GAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRTDT 184
G ++ E +D YF VTL+T+G GD P F + T
Sbjct: 21 GTIFYSTVEGLRPIDALYFSVVTLTTVGDGDFSPQTDFGKIFT 63
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122
W+ S L ++ I T+GYG+ +P TP+G T+ + GI + ++ L + L + Q
Sbjct: 46 WTVS--LYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIATFAVAVARLLTFLINREQ 103
Query: 123 FTYSHSCCASRQKSGYIC 140
++ + IC
Sbjct: 104 MKLIGLIDVAKSRHVVIC 121
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 146 FAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 175
F E W+ Y+ FVT++T+G+GD P
Sbjct: 40 FIEGESWTV--SLYWTFVTIATVGYGDYSP 67
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 55 DPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
D + R SF+ A +SV + TIGYG L P P+ + + AL G+
Sbjct: 73 DVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
SF D +F T++TIG+G L+P
Sbjct: 82 SFTDAFFFSVQTMATIGYGKLIP 104
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 55 DPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
D + R SF+ A +SV + TIGYG L P P+ + + AL G+
Sbjct: 73 DVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
SF D +F T++TIG+G L+P
Sbjct: 82 SFTDAFFFSVQTMATIGYGKLIP 104
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 42 VIEMSSQLGYNGRDPADKDRQW-SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYAL 100
VI SS + + D ++D Q+ S A ++V +TT+GYG++ P T GKIV + A+
Sbjct: 354 VILFSSAVYFAEAD--ERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAI 411
Query: 101 FGIPLMLLCISNLGSLLADTFQFTYSHSCCASRQKSGYICI 141
G+ L I+ ++ F + Y H +++ Y+ +
Sbjct: 412 AGV----LTIALPVPVIVSNFNYFY-HRETEGEEQAQYLQV 447
Score = 26.6 bits (57), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
S D ++ V+++T+G+GD+VP
Sbjct: 375 SIPDAFWWAVVSMTTVGYGDMVP 397
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 55 DPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
D + R SF+ A +SV + TIGYG L P P+ + + AL G+
Sbjct: 73 DVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
SF D +F T++TIG+G L+P
Sbjct: 82 SFTDAFFFSVQTMATIGYGKLIP 104
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 55 DPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
D + R SF+ A +SV + TIGYG L P P+ + + AL G+
Sbjct: 73 DVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
SF D +F T++TIG+G L+P
Sbjct: 82 SFTDAFFFSVQTMATIGYGKLIP 104
>pdb|3ZRS|A Chain A, X-Ray Crystal Structure Of A Kirbac Potassium Channel
Highlights A Mechanism Of Channel Opening At The
Bundle-Crossing Gate
Length = 301
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 55 DPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
D + R SF+ A +SV + TIGYG L P P+ + + AL G+
Sbjct: 73 DVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
SF D +F T++TIG+G L+P
Sbjct: 82 SFTDAFFFSVQTMATIGYGKLIP 104
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 55 DPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
D + R SF+ A +SV + TIGYG L P P+ + + AL G+
Sbjct: 73 DVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM 121
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
SF D +F T++TIG+G L+P
Sbjct: 82 SFTDAFFFSVQTMATIGYGKLIP 104
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 42 VIEMSSQLGYNGRDPADKDRQW-SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYAL 100
VI SS + + D ++D Q+ S A ++V +TT+GYG++ P T GKIV + A+
Sbjct: 354 VILFSSAVYFAEAD--ERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAI 411
Query: 101 FGIPLMLLCISNLGSLLADTFQFTYSHSCCASRQKSGYICI 141
G+ L I+ ++ F + Y H +++ Y+ +
Sbjct: 412 AGV----LTIALPVPVIVSNFNYFY-HRETEGEEQAQYLQV 447
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 42 VIEMSSQLGYNGRDPADKDRQW-SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYAL 100
VI SS + + D ++D Q+ S A ++V +TT+GYG++ P T GKIV + A+
Sbjct: 339 VILFSSAVYFAEAD--ERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAI 396
Query: 101 FGIPLMLLCISNLGSLLADTFQFTYSHSCCASRQKSGYICI 141
G+ L I+ ++ F + Y H +++ Y+ +
Sbjct: 397 AGV----LTIALPVPVIVSNFNYFY-HRETEGEEQAQYLQV 432
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 42 VIEMSSQLGYNGRDPADKDRQW-SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYAL 100
VI SS + + D ++D Q+ S A ++V +TT+GYG++ P T GKIV + A+
Sbjct: 339 VILFSSAVYFAEAD--ERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAI 396
Query: 101 FGIPLMLLCISNLGSLLADTFQFTYSHSCCASRQKSGYICI 141
G+ L I+ ++ F + Y H +++ Y+ +
Sbjct: 397 AGV----LTIALPVPVIVSNFNYFY-HRETEGEEQAQYLQV 432
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122
W+ S L ++ I T+GYG+ +P TP+G T+ + GI + + L L + Q
Sbjct: 46 WTVS--LYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQ 103
Query: 123 FTYSHSCCASRQKSGYIC 140
++ + IC
Sbjct: 104 MKLMGLIDVAKSRHVVIC 121
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 146 FAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 175
F E W+ Y+ FVT++T+G+GD P
Sbjct: 40 FIEGESWTV--SLYWTFVTIATVGYGDYSP 67
>pdb|3EFF|K Chain K, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|L Chain L, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|M Chain M, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
pdb|3EFF|N Chain N, The Crystal Structure Of Full-Length Kcsa In Its Closed
Conformation
Length = 139
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQF 123
++ AL +SV TT+GYG+L P T G++V +V + GI L + L + Q
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99
Query: 124 TYSHSCCASRQKS 136
H S + +
Sbjct: 100 RRGHFVRHSEKAA 112
>pdb|1F6G|A Chain A, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|B Chain B, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|C Chain C, Potassium Channel (Kcsa) Full-Length Fold
pdb|1F6G|D Chain D, Potassium Channel (Kcsa) Full-Length Fold
Length = 160
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQF 123
++ AL +SV TT+GYG+L P T G+ V +V + GI L + L + Q
Sbjct: 61 TYPAALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGREQE 120
Query: 124 TYSHSCCASRQKS 136
H S + +
Sbjct: 121 RRGHFVRHSEKAA 133
>pdb|3PJS|K Chain K, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|L Chain L, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|M Chain M, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
pdb|3PJS|N Chain N, Mechanism Of Activation Gating In The Full-Length Kcsa K+
Channel
Length = 166
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS 115
++ AL +SV TT+GYG+L P T G++V +V + GI L + L +
Sbjct: 67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALAT 118
>pdb|3STL|C Chain C, Kcsa Potassium Channel Mutant Y82c With Cadmium Bound
Length = 103
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G++V +V + GI
Sbjct: 40 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGI 79
>pdb|3STZ|C Chain C, Kcsa Potassium Channel Mutant Y82c With Nitroxide Spin
Label
Length = 102
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G++V +V + GI
Sbjct: 39 TYPRALWWSVETATTVGYGDLCPVTLWGRLVAVVVMVAGI 78
>pdb|3OGC|C Chain C, Kcsa E71a Variant In Presence Of Na+
Length = 131
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G++V +V + GI
Sbjct: 68 TYPRALWWSVATATTVGYGDLYPVTLWGRLVAVVVMVAGI 107
>pdb|2A9H|A Chain A, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|B Chain B, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|C Chain C, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
pdb|2A9H|D Chain D, Nmr Structural Studies Of A Potassium Channel
Charybdotoxin Complex
Length = 155
Score = 33.9 bits (76), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
S+ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 84 SYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 123
>pdb|2K1E|A Chain A, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|B Chain B, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|C Chain C, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2K1E|D Chain D, Nmr Studies Of A Channel Protein Without Membranes:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|A Chain A, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|B Chain B, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|C Chain C, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
pdb|2KB1|D Chain D, Nmr Studies Of A Channel Protein Without Membrane:
Structure And Dynamics Of Water-Solubilized Kcsa
Length = 103
Score = 33.5 bits (75), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS 115
S+ A+ +SV TT+GYG+ P T G+ V GI + L + L +
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALAT 91
>pdb|3IFX|A Chain A, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|B Chain B, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|C Chain C, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
pdb|3IFX|D Chain D, Crystal Structure Of The Spin-Labeled Kcsa Mutant V48r1
Length = 129
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G++V +V + GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|2P7T|C Chain C, Crystal Structure Of Kcsa Mutant
Length = 103
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV+ TT+GYG+L P T G+ V +V + GI
Sbjct: 40 TYPRALWWSVSTATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|1ZWI|C Chain C, Structure Of Mutant Kcsa Potassium Channel
Length = 103
Score = 32.7 bits (73), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 40 TYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|2ATK|C Chain C, Structure Of A Mutant Kcsa K+ Channel
Length = 124
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 61 TYPRALWWSVATATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|2HJF|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetrabutylammonium
(Tba)
pdb|2DWD|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Tl+
pdb|2DWE|C Chain C, Crystal Structure Of Kcsa-Fab-Tba Complex In Rb+
Length = 103
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS 115
++ AL +SV TT+GYG+L P T G+ V +V + GI L + L +
Sbjct: 40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALAT 91
>pdb|3OR6|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71q
Length = 103
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS 115
++ AL +SV TT+GYG+L P T G+ V +V + GI L + L +
Sbjct: 40 TYPRALWWSVQTATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALAT 91
>pdb|3OR7|C Chain C, On The Structural Basis Of Modal Gating Behavior In
K+channels - E71i
Length = 103
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 40 TYPRALWWSVITATTVGYGDLYPVTLWGRCVAVVVMVAGI 79
>pdb|1K4D|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
K+
pdb|1K4C|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of K+
pdb|1R3I|C Chain C, Potassium Channel Kcsa-Fab Complex In Rb+
pdb|1R3J|C Chain C, Potassium Channel Kcsa-Fab Complex In High Concentration
Of Tl+
pdb|1R3K|C Chain C, Potassium Channel Kcsa-Fab Complex In Low Concentration Of
Tl+
pdb|1R3L|C Chain C, Potassium Channel Kcsa-Fab Complex In Cs+
pdb|2BOB|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetrabutylammonium (Tba)
pdb|2BOC|C Chain C, Potassium Channel Kcsa-Fab Complex In Thallium With
Tetraethylarsonium (Teas)
pdb|2HVJ|C Chain C, Crystal Structure Of Kcsa-fab-tba Complex In Low K+
pdb|2HVK|C Chain C, Crystal Structure Of The Kcsa-Fab-Tba Complex In High K+
pdb|2ITC|C Chain C, Potassium Channel Kcsa-Fab Complex In Sodium Chloride
pdb|2ITD|C Chain C, Potassium Channel Kcsa-Fab Complex In Barium Chloride
pdb|3GB7|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+
pdb|3IGA|C Chain C, Potassium Channel Kcsa-Fab Complex In Li+ And K+
Length = 124
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 53 GRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKT 88
G P F GA +SV + T+GYG++ P+T
Sbjct: 67 GSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQT 102
>pdb|1JVM|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
pdb|1JVM|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Rubidium
Length = 125
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|1J95|A Chain A, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|B Chain B, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|C Chain C, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
pdb|1J95|D Chain D, Kcsa Potassium Channel With Tba (Tetrabutylammonium) And
Potassium
Length = 125
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|2JK5|C Chain C, Potassium Channel Kcsa In Complex With Tetrabutylammonium
In High K
pdb|2W0F|C Chain C, Potassium Channel Kcsa-Fab Complex With Tetraoctylammonium
Length = 124
Score = 32.3 bits (72), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|3HPL|C Chain C, Kcsa E71h-F103a Mutant In The Closed State
Length = 124
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 61 TYPRALWWSVHTATTVGYGDLYPVTLWGRCVAVVVMVAGI 100
>pdb|1BL8|A Chain A, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|B Chain B, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|C Chain C, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|1BL8|D Chain D, Potassium Channel (Kcsa) From Streptomyces Lividans
pdb|2QTO|A Chain A, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|B Chain B, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|C Chain C, An Anisotropic Model For Potassium Channel Kcsa
pdb|2QTO|D Chain D, An Anisotropic Model For Potassium Channel Kcsa
Length = 97
Score = 32.0 bits (71), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 39 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 78
>pdb|3F5W|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
32 A Opening At T112
pdb|3F7V|C Chain C, Kcsa Potassium Channel In The Open-Inactivated State With
23 A Opening At T112
pdb|3F7Y|C Chain C, Kcsa Potassium Channel In The Partially Open State With 17
A Opening At T112
pdb|3FB5|C Chain C, Kcsa Potassium Channel In The Partially Open State With
14.5 A Opening At T112
pdb|3FB6|C Chain C, Kcsa Potassium Channel In The Partially Open State With 16
A Opening At T112
pdb|3FB8|C Chain C, Kcsa Potassium Channel In The Open-Conductive State With
20 At T112 In The Presence Of Rb+ Ion
pdb|3FB7|C Chain C, Open Kcsa Potassium Channel In The Presence Of Rb+ Ion
Length = 104
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
AL +SV TT+GYG+L P T G+ V +V + GI
Sbjct: 45 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 80
>pdb|1S5H|C Chain C, Potassium Channel Kcsa-Fab Complex T75c Mutant In K+
Length = 124
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL +SV T +GYG+L P T G++V +V + GI
Sbjct: 61 TYPRALWWSVETATCVGYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 65 FSGALLYSVTVITTIGYGNLAPKT 88
F GA +SV + T+GYG++ P+T
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQT 120
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 65 FSGALLYSVTVITTIGYGNLAPKT 88
F GA +SV + T+GYG++ P+T
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQT 120
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 31.2 bits (69), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
+ W+ S L ++ I T+GYG+ +P+TP+G T + GI
Sbjct: 25 EGESWTVS--LYWTFVTIATVGYGDYSPRTPLGMYFTCTLIVLGI 67
>pdb|4GX5|A Chain A, Gsuk Channel
pdb|4GX5|B Chain B, Gsuk Channel
pdb|4GX5|C Chain C, Gsuk Channel
pdb|4GX5|D Chain D, Gsuk Channel
Length = 565
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCI 110
+ R +SF + +++TV+TT+G+G++ ++ G + + + G+ +L+ +
Sbjct: 46 EGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLLIIL 97
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 152 WSFLDGAYFCFVTLSTIGFGDL 173
+SF+ G Y+ ++T+GFGD+
Sbjct: 50 YSFMAGIYWTITVMTTLGFGDI 71
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 30.8 bits (68), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLAD 119
S++ +L ++ I T+GYG+ +P TP+G T + GI + + L L +
Sbjct: 35 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFLIN 90
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 30.4 bits (67), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
+ W+ S L ++ I T+GYG+ +P TP+G T + GI
Sbjct: 25 EGESWTVS--LYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGI 67
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 30.0 bits (66), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
+ W+ S L ++ I T+GYG+ +P TP+G T + GI
Sbjct: 25 EGESWTVS--LYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGI 67
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVG-DTPPPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 68 ALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLG 114
AL +SV +TT+G P+T GKI T++Y GI L+ I L
Sbjct: 36 ALYFSVVTLTTVGETP-PPQTDFGKIFTILYIFIGIGLVFGFIHKLA 81
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 28/45 (62%)
Query: 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
+ R +SF + +++TV+TT+G+G++ ++ G + + + G+
Sbjct: 46 EGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGV 90
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 152 WSFLDGAYFCFVTLSTIGFGDL 173
+SF+ G Y+ ++T+GFGD+
Sbjct: 50 YSFMAGIYWTITVMTTLGFGDI 71
>pdb|1YDE|A Chain A, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|B Chain B, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|C Chain C, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|D Chain D, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|E Chain E, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|F Chain F, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|G Chain G, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|H Chain H, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|I Chain I, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|J Chain J, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|K Chain K, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|L Chain L, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|M Chain M, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|N Chain N, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|O Chain O, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
pdb|1YDE|P Chain P, Crystal Structure Of Human Retinal Short-Chain
DehydrogenaseREDUCTASE 3
Length = 270
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 6 HYSGPRKQEDVE--------RLNVLYEQNWTTLVTEQLRRFESNVIEMSSQLGYNGR 54
H+ P++ E+ LN+L T L LR+ + NVI +SS +G G+
Sbjct: 92 HHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQ 148
>pdb|3SYA|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) In Complex With Sodium And
Pip2
pdb|3SYO|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) In Complex With Sodium
Length = 340
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 65 FSGALLYSVTVITTIGYGN--LAPKTPIGKIVTMVYALFG 102
F A L+S+ TTIGYG + K P G I+ ++ ++ G
Sbjct: 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLG 131
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
+ W+ S L ++ I +GYG+ +P TP+G T + GI
Sbjct: 25 EGESWTVS--LYWTFVTIAAVGYGDYSPHTPLGMYFTCTLIVLGI 67
>pdb|3SYP|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant
pdb|3SYQ|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant In Complex With
Pip2
pdb|3SYQ|B Chain B, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) R201a Mutant In Complex With
Pip2
Length = 340
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 65 FSGALLYSVTVITTIGYGN--LAPKTPIGKIVTMVYALFG 102
F A L+S+ TTIGYG + K P G I+ ++ ++ G
Sbjct: 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLG 131
>pdb|3SYC|A Chain A, Crystal Structure Of The G Protein-Gated Inward Rectifier
K+ Channel Girk2 (Kir3.2) D228n Mutant
Length = 340
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 65 FSGALLYSVTVITTIGYGN--LAPKTPIGKIVTMVYALFG 102
F A L+S+ TTIGYG + K P G I+ ++ ++ G
Sbjct: 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLG 131
>pdb|2NLJ|C Chain C, Potassium Channel Kcsa(M96v)-Fab Complex In Kcl
Length = 124
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQF 123
++ AL +SV TT+GYG+L P T G+ V +V + GI L + L + Q
Sbjct: 61 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVVVAGITSFGLVTAALATWFVGREQE 120
Query: 124 TYSH 127
H
Sbjct: 121 RRGH 124
>pdb|2IH1|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
pdb|2IH3|C Chain C, Ion Selectivity In A Semi-Synthetic K+ Channel Locked In
The Conductive Conformation
Length = 122
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
++ AL ++ TT+ YG+L P T G++V +V + GI
Sbjct: 61 TYPRALWWACETATTVXYGDLYPVTLWGRLVAVVVMVAGI 100
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 27.3 bits (59), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 220 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 260
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 220 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 260
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 220 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 260
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 220 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 260
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 220 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 260
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 237 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 277
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 237 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 277
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 2 DMRRHYSGPRKQEDVERLNVLYEQNWTTLVTEQLRRFESNV 42
D HY G +D+ + LY N TT + + F SN
Sbjct: 237 DYNGHYGGAPMIDDIAAIQRLYGANMTTRTGDSVYGFNSNT 277
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,703,801
Number of Sequences: 62578
Number of extensions: 225923
Number of successful extensions: 582
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 434
Number of HSP's gapped (non-prelim): 153
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)