Query psy5555
Match_columns 185
No_of_seqs 220 out of 2114
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 20:31:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ukm_A Potassium channel subfa 100.0 6.5E-36 2.2E-40 247.4 -7.9 162 17-181 49-229 (280)
2 3um7_A Potassium channel subfa 100.0 5E-36 1.7E-40 251.3 -9.2 163 17-182 68-253 (309)
3 2k1e_A Water soluble analogue 99.5 1.1E-15 3.9E-20 108.6 -0.6 64 59-122 35-98 (103)
4 4h33_A LMO2059 protein; bilaye 99.5 6.4E-16 2.2E-20 115.3 -4.5 60 61-120 40-99 (137)
5 3eff_K Voltage-gated potassium 99.5 1.1E-15 3.7E-20 114.1 -3.3 66 58-123 34-99 (139)
6 3ldc_A Calcium-gated potassium 99.4 7.9E-16 2.7E-20 105.2 -5.1 57 61-117 25-81 (82)
7 2ih3_C Voltage-gated potassium 99.4 1.5E-15 5.2E-20 111.2 -4.0 64 59-122 56-119 (122)
8 3pjs_K KCSA, voltage-gated pot 99.4 4.8E-15 1.6E-19 113.9 -1.4 64 58-121 61-124 (166)
9 3ouf_A Potassium channel prote 99.4 3E-15 1E-19 105.4 -4.4 58 61-118 29-86 (97)
10 2a9h_A Voltage-gated potassium 99.4 6.3E-15 2.2E-19 112.2 -4.5 64 59-122 79-142 (155)
11 2q67_A Potassium channel prote 99.4 6.9E-15 2.3E-19 106.5 -4.6 57 62-118 47-103 (114)
12 3ldc_A Calcium-gated potassium 99.4 7.5E-15 2.6E-19 100.3 -4.6 48 135-182 10-57 (82)
13 3ouf_A Potassium channel prote 99.3 3E-14 1E-18 100.2 -4.4 48 135-182 14-61 (97)
14 3vou_A ION transport 2 domain 99.3 3.5E-14 1.2E-18 107.0 -5.0 56 62-117 50-105 (148)
15 2q67_A Potassium channel prote 99.3 4.3E-14 1.5E-18 102.2 -4.3 48 135-182 31-78 (114)
16 1orq_C Potassium channel; volt 99.2 1.7E-13 5.8E-18 109.0 -3.5 64 58-121 159-222 (223)
17 3vou_A ION transport 2 domain 99.2 1.5E-13 5.1E-18 103.5 -4.4 48 135-182 34-81 (148)
18 2k1e_A Water soluble analogue 99.2 3.7E-13 1.3E-17 95.5 -2.3 48 135-182 15-69 (103)
19 3eff_K Voltage-gated potassium 99.2 3.6E-13 1.2E-17 100.3 -4.3 48 135-182 15-69 (139)
20 3pjs_K KCSA, voltage-gated pot 99.1 1.2E-12 4.2E-17 100.3 -3.0 48 135-182 42-96 (166)
21 4h33_A LMO2059 protein; bilaye 99.1 1E-12 3.4E-17 97.9 -4.5 38 145-182 35-72 (137)
22 2ih3_C Voltage-gated potassium 99.1 1.3E-12 4.6E-17 95.4 -4.6 46 137-182 38-90 (122)
23 3um7_A Potassium channel subfa 99.1 4.3E-12 1.5E-16 106.2 -2.5 61 61-121 221-287 (309)
24 2a9h_A Voltage-gated potassium 99.1 2.2E-12 7.7E-17 98.0 -4.6 48 135-182 59-113 (155)
25 1lnq_A MTHK channels, potassiu 99.0 4.8E-12 1.6E-16 106.2 -4.4 60 61-120 42-101 (336)
26 3ukm_A Potassium channel subfa 99.0 1.2E-11 4.1E-16 102.2 -2.5 58 62-119 199-263 (280)
27 1xl4_A Inward rectifier potass 99.0 6.9E-12 2.4E-16 104.7 -5.2 61 60-120 78-138 (301)
28 2qks_A KIR3.1-prokaryotic KIR 99.0 9.4E-12 3.2E-16 104.8 -4.6 63 60-122 74-136 (321)
29 1p7b_A Integral membrane chann 98.9 1.8E-11 6.2E-16 103.5 -4.1 63 60-122 92-154 (333)
30 1lnq_A MTHK channels, potassiu 98.9 3E-11 1E-15 101.4 -3.6 48 135-182 27-74 (336)
31 3beh_A MLL3241 protein; transm 98.9 3.5E-11 1.2E-15 101.6 -5.6 61 62-122 159-219 (355)
32 4gx0_A TRKA domain protein; me 98.8 7.4E-11 2.5E-15 105.5 -4.0 57 61-117 48-105 (565)
33 2r9r_B Paddle chimera voltage 98.8 7.4E-11 2.5E-15 105.0 -6.3 64 59-122 370-433 (514)
34 1orq_C Potassium channel; volt 98.7 3.2E-10 1.1E-14 90.0 -4.4 45 138-182 143-194 (223)
35 4gx0_A TRKA domain protein; me 98.5 2.1E-09 7.3E-14 96.0 -4.6 44 139-182 31-80 (565)
36 3sya_A G protein-activated inw 98.5 3.4E-09 1.1E-13 89.7 -3.3 62 62-123 89-152 (340)
37 3beh_A MLL3241 protein; transm 98.4 8.5E-09 2.9E-13 86.9 -4.6 45 138-182 139-190 (355)
38 3spc_A Inward-rectifier K+ cha 98.3 1.1E-08 3.6E-13 86.7 -4.7 62 62-123 92-155 (343)
39 1xl4_A Inward rectifier potass 98.3 1.2E-08 4.3E-13 85.0 -4.7 31 152-182 81-111 (301)
40 1p7b_A Integral membrane chann 98.2 4.2E-08 1.5E-12 82.8 -4.7 32 151-182 94-125 (333)
41 2qks_A KIR3.1-prokaryotic KIR 98.1 6.3E-08 2.2E-12 81.4 -4.2 31 151-181 76-106 (321)
42 2r9r_B Paddle chimera voltage 97.6 1.3E-06 4.4E-11 77.6 -4.6 31 152-182 374-404 (514)
43 3sya_A G protein-activated inw 97.4 6.1E-06 2.1E-10 69.7 -3.9 30 152-181 90-121 (340)
44 3rvy_A ION transport protein; 97.2 7.4E-06 2.5E-10 67.0 -5.4 62 61-122 177-244 (285)
45 3spc_A Inward-rectifier K+ cha 97.2 1E-05 3.5E-10 68.4 -4.7 30 152-181 93-124 (343)
46 3rvy_A ION transport protein; 90.9 0.0044 1.5E-07 50.3 -6.0 29 152-180 179-209 (285)
47 3kg2_A Glutamate receptor 2; I 78.4 0.091 3.1E-06 48.0 -4.5 58 61-119 560-617 (823)
48 4dxw_A Navrh, ION transport pr 58.0 0.3 1E-05 38.0 -5.0 59 60-118 161-224 (229)
No 1
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.98 E-value=6.5e-36 Score=247.41 Aligned_cols=162 Identities=33% Similarity=0.626 Sum_probs=126.7
Q ss_pred hhhhhhhhccchhhhHHHHhhhhhceeeeccccccCCCCCCCCCcccceeeeeeEEEEEEEEeeccccccCCCCceeehh
Q psy5555 17 ERLNVLYEQNWTTLVTEQLRRFESNVIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTM 96 (185)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~ 96 (185)
+|.+.+ ++..|+..++|+++.+.+.++ ...|..+.++..+.+.|++.+|+||+++|+|||||||++|.|+.||++++
T Consensus 49 ~~~~fl--~~~~~~s~~~l~~~~~~~~~a-~~~g~~~~~~~~~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~ 125 (280)
T 3ukm_A 49 LKRRFL--EEHECLSEQQLEQFLGRVLEA-SNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCI 125 (280)
T ss_dssp HHHHHH--HHCTTCCHHHHHHHHHHHHHH-HTTTCCCC------CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHH
T ss_pred HHHHHH--HhcccccHHHHHHHHHHHHHH-HhcCCccccCCCCCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHH
Confidence 344444 344567778899999888887 77888877766778899999999999999999999999999999999999
Q ss_pred hHHHhhhhHHHHHHhhhhhhhhhhhhhh-hc---ccccccc--------------hhheeeehhhhhhhhhc-ccccccc
Q psy5555 97 VYALFGIPLMLLCISNLGSLLADTFQFT-YS---HSCCASR--------------QKSGYICIGAGVFAAWE-EWSFLDG 157 (185)
Q Consensus 97 ~~~l~Gi~~~~~~~~~i~~~l~~~~~~~-~~---~~~~~~~--------------~~~~~i~~ga~vf~~~e-~w~~~~a 157 (185)
+|+++|+|++++.++.+++.+.....+. .. ++...++ .+++++++|+++|+..| +|+|.||
T Consensus 126 ~~~l~Gi~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ga~~~~~~E~~~s~~da 205 (280)
T 3ukm_A 126 IYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLES 205 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSTTTTTC------CCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhh
Confidence 9999999999999999998876654221 11 1111110 03446678899999999 8999999
Q ss_pred eeEEEEEeeeeecccCCCCccccc
Q psy5555 158 AYFCFVTLSTIGFGDLVPGKSFQR 181 (185)
Q Consensus 158 ~Yf~fiTltTVGfGD~vP~~~~~~ 181 (185)
+|||++|+|||||||++|.++.+|
T Consensus 206 ~y~~~iTltTvGyGD~~p~t~~~~ 229 (280)
T 3ukm_A 206 FYFCFISLSTIGLGDYVPGEGYNQ 229 (280)
T ss_dssp HHHHHHHHTTCCCCSCCSSCSSSC
T ss_pred hhheeeeeecccCCCCCCCCCccc
Confidence 999999999999999999999764
No 2
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.98 E-value=5e-36 Score=251.27 Aligned_cols=163 Identities=30% Similarity=0.524 Sum_probs=130.8
Q ss_pred hhhhhhhhccchhhhHHHHhhhhhceeeeccccccCCCCC---CCCCcccceeeeeeEEEEEEEEeeccccccCCCCcee
Q psy5555 17 ERLNVLYEQNWTTLVTEQLRRFESNVIEMSSQLGYNGRDP---ADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKI 93 (185)
Q Consensus 17 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~ 93 (185)
+|.+.+ ++..|+..+.++++.+.+.++ .+.|+++..+ ....+.|++.+|+||+++|+|||||||++|.|..||+
T Consensus 68 ~~~~fl--~~~~~~~~~~l~~l~~~v~~A-~~~Gv~~~~~~~~~~~~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~ 144 (309)
T 3um7_A 68 VREKFL--RAHPCVSDQELGLLIKEVADA-LGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRL 144 (309)
T ss_dssp HHGGGT--SSCCCSCSHHHHHHHHHHHHH-HHTTCCCSSCCCC-----CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHH
T ss_pred HHHHHH--HhcccccHHHHHHHHHHHHHH-HhcCCCccccccCCCCCCCCChhhhhHhhheeeeecccCCCCCCCccchh
Confidence 344444 456678888999999998887 7788877543 2335689999999999999999999999999999999
Q ss_pred ehhhHHHhhhhHHHHHHhhhhhhhhhhhhhhhccc------cc-cc---ch----------hheeeehhhhhhhhhcccc
Q psy5555 94 VTMVYALFGIPLMLLCISNLGSLLADTFQFTYSHS------CC-AS---RQ----------KSGYICIGAGVFAAWEEWS 153 (185)
Q Consensus 94 ~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~~~~~~~------~~-~~---~~----------~~~~i~~ga~vf~~~e~w~ 153 (185)
++++|+++|+++++++++.+++.+.+..++...+. .. .+ +. +++++++|+.+|+..|+|+
T Consensus 145 ~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ga~~~~~~E~~~ 224 (309)
T 3um7_A 145 FCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWS 224 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--CCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999987665432211 00 00 10 3456778899999999999
Q ss_pred cccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 154 FLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 154 ~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
|.||+||+++|+|||||||++|.++.||.
T Consensus 225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~ 253 (309)
T 3um7_A 225 KLEAIYFVIVTLTTVGFGDYVAGADPRQD 253 (309)
T ss_dssp HHHHHHHHHHHHTTCCCSSCCTTCCTTCC
T ss_pred HHHHHHHHHhheeccccCCCCCCCccccc
Confidence 99999999999999999999999999884
No 3
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.50 E-value=1.1e-15 Score=108.56 Aligned_cols=64 Identities=27% Similarity=0.351 Sum_probs=58.9
Q ss_pred CCcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 59 ~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
+++.+++.+|+||+++|+|||||||+.|.|+.||+++++++++|++++++.++.+.+.+.+..+
T Consensus 35 ~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~~~ 98 (103)
T 2k1e_A 35 GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRREE 98 (103)
T ss_dssp TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGHHH
T ss_pred CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999999999988876654
No 4
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.46 E-value=6.4e-16 Score=115.32 Aligned_cols=60 Identities=30% Similarity=0.634 Sum_probs=56.6
Q ss_pred cccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADT 120 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~ 120 (185)
+.|++.+|+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+++.+...
T Consensus 40 ~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 99 (137)
T 4h33_A 40 EINNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCK 99 (137)
T ss_dssp SCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999999999999887643
No 5
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.46 E-value=1.1e-15 Score=114.06 Aligned_cols=66 Identities=30% Similarity=0.430 Sum_probs=60.4
Q ss_pred CCCcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhhh
Q psy5555 58 DKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQF 123 (185)
Q Consensus 58 ~~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~~ 123 (185)
.+...|++.+|+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.+..+.
T Consensus 34 ~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 34 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345679999999999999999999999999999999999999999999999999999988765543
No 6
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.44 E-value=7.9e-16 Score=105.17 Aligned_cols=57 Identities=28% Similarity=0.553 Sum_probs=54.0
Q ss_pred cccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLL 117 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l 117 (185)
++|++.||+||+.+|+||+||||+.|.|+.||+++++++++|+++++..++.+++.+
T Consensus 25 e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 25 EGESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999988765
No 7
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.44 E-value=1.5e-15 Score=111.15 Aligned_cols=64 Identities=27% Similarity=0.412 Sum_probs=59.5
Q ss_pred CCcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 59 ~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
++..|++.||+||+++|+||+||||++|.|+.||+++++++++|+.++++.++.+++.+.+..+
T Consensus 56 ~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~~ 119 (122)
T 2ih3_C 56 GAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 119 (122)
T ss_dssp TCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999999999999999999999999999999999998876554
No 8
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.44 E-value=4.8e-15 Score=113.88 Aligned_cols=64 Identities=30% Similarity=0.451 Sum_probs=59.4
Q ss_pred CCCcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhh
Q psy5555 58 DKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTF 121 (185)
Q Consensus 58 ~~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~ 121 (185)
.+...|++.+|+||+++|+|||||||++|.|+.||+++++++++|++++++.++.+++.+.+..
T Consensus 61 ~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 61 PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556799999999999999999999999999999999999999999999999999999887554
No 9
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.40 E-value=3e-15 Score=105.40 Aligned_cols=58 Identities=36% Similarity=0.621 Sum_probs=55.2
Q ss_pred cccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLA 118 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~ 118 (185)
++|++.||+||+.+|+|||||||+.|.|+.||+++++++++|+++++..++.++..+.
T Consensus 29 e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 29 EGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3699999999999999999999999999999999999999999999999999988776
No 10
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.37 E-value=6.3e-15 Score=112.15 Aligned_cols=64 Identities=31% Similarity=0.433 Sum_probs=59.4
Q ss_pred CCcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 59 ~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
+++.+++.+|+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+++.+.+..+
T Consensus 79 ~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 79 GAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp CSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999998886654
No 11
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.37 E-value=6.9e-15 Score=106.47 Aligned_cols=57 Identities=37% Similarity=0.581 Sum_probs=54.2
Q ss_pred ccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhh
Q psy5555 62 QWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLA 118 (185)
Q Consensus 62 ~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~ 118 (185)
.|++.||+||+++|+|||||||+.|.|+.||+++++++++|+++++..++.+++.+.
T Consensus 47 ~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 47 GLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp CCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999998887764
No 12
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.36 E-value=7.5e-15 Score=100.25 Aligned_cols=48 Identities=29% Similarity=0.439 Sum_probs=43.6
Q ss_pred hheeeehhhhhhhhhcccccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
++++++.|+.+|+..|+|++.||+||+++|+|||||||++|.++.||.
T Consensus 10 ~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~ 57 (82)
T 3ldc_A 10 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLGMY 57 (82)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccHHH
Confidence 345577889999999999999999999999999999999999998874
No 13
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.30 E-value=3e-14 Score=100.24 Aligned_cols=48 Identities=29% Similarity=0.522 Sum_probs=43.1
Q ss_pred hheeeehhhhhhhhhcccccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
++++++.|+.+|...|+|++.||+||+++|+|||||||++|.++.||.
T Consensus 14 ~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~ 61 (97)
T 3ouf_A 14 TILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKI 61 (97)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHH
Confidence 344567788899999999999999999999999999999999998874
No 14
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.29 E-value=3.5e-14 Score=107.03 Aligned_cols=56 Identities=36% Similarity=0.581 Sum_probs=53.0
Q ss_pred ccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhh
Q psy5555 62 QWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLL 117 (185)
Q Consensus 62 ~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l 117 (185)
.|++.+|+||+++|+|||||||++|.|+.||+++++++++|+++++..++.++..+
T Consensus 50 ~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~ 105 (148)
T 3vou_A 50 GLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNV 105 (148)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999888643
No 15
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.29 E-value=4.3e-14 Score=102.25 Aligned_cols=48 Identities=27% Similarity=0.454 Sum_probs=43.3
Q ss_pred hheeeehhhhhhhhhcccccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+++++++|+.+|...|+|++.||+||+++|+|||||||++|.++.||.
T Consensus 31 ~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~ 78 (114)
T 2q67_A 31 TILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKI 78 (114)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhHHH
Confidence 445567888999999999999999999999999999999999998874
No 16
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.24 E-value=1.7e-13 Score=109.05 Aligned_cols=64 Identities=31% Similarity=0.565 Sum_probs=58.8
Q ss_pred CCCcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhh
Q psy5555 58 DKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTF 121 (185)
Q Consensus 58 ~~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~ 121 (185)
++++.|++.+|+||+++|+||+||||+.|.|+.||+++++++++|+.++++.++.+++.+.+..
T Consensus 159 ~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 222 (223)
T 1orq_C 159 PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQKIL 222 (223)
T ss_dssp TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455789999999999999999999999999999999999999999999999999998887643
No 17
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.22 E-value=1.5e-13 Score=103.52 Aligned_cols=48 Identities=29% Similarity=0.448 Sum_probs=43.1
Q ss_pred hheeeehhhhhhhhhcccccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
++++++.|+.+|...|+|+|.||+||+++|+|||||||++|.++.||.
T Consensus 34 ~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~ 81 (148)
T 3vou_A 34 TFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKV 81 (148)
T ss_dssp HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccHHH
Confidence 455667888889999999999999999999999999999999998874
No 18
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.22 E-value=3.7e-13 Score=95.52 Aligned_cols=48 Identities=21% Similarity=0.238 Sum_probs=42.6
Q ss_pred hheeeehhhhhhhhhccc-------ccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~w-------~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+++++++++.+++..|+| +|.||+||+++|+|||||||++|.+..||.
T Consensus 15 ~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~ 69 (103)
T 2k1e_A 15 LQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRK 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTH
T ss_pred HHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhHHH
Confidence 344567888899999987 999999999999999999999999999884
No 19
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.18 E-value=3.6e-13 Score=100.29 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=42.6
Q ss_pred hheeeehhhhhhhhhcc-------cccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~-------w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+++++++++.++...|+ |+|.||+||+++|+|||||||++|.+..||.
T Consensus 15 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~ 69 (139)
T 3eff_K 15 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRL 69 (139)
T ss_dssp HHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHH
Confidence 44556778888888888 9999999999999999999999999998874
No 20
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.14 E-value=1.2e-12 Score=100.35 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=42.2
Q ss_pred hheeeehhhhhhhhhcc-------cccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~-------w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+++++++++.++...|+ |+|.||+||+++|+|||||||++|.+..||.
T Consensus 42 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~ 96 (166)
T 3pjs_K 42 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRL 96 (166)
T ss_dssp STTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHH
Confidence 34456677888888888 9999999999999999999999999999985
No 21
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.11 E-value=1e-12 Score=97.92 Aligned_cols=38 Identities=34% Similarity=0.603 Sum_probs=33.1
Q ss_pred hhhhhcccccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 145 VFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 145 vf~~~e~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
.+...|.|+|.||+||+++|+|||||||++|.+..||.
T Consensus 35 ~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~ 72 (137)
T 4h33_A 35 VFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGRI 72 (137)
T ss_dssp HHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhHHH
Confidence 33444569999999999999999999999999999874
No 22
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.09 E-value=1.3e-12 Score=95.39 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=40.4
Q ss_pred eeeehhhhhhhhhcc-------cccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 137 GYICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 137 ~~i~~ga~vf~~~e~-------w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+.+++++.+++..|+ |++.||+||+++|+|||||||++|.+..||.
T Consensus 38 ~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~ 90 (122)
T 2ih3_C 38 IVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRL 90 (122)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHH
T ss_pred HHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccHHH
Confidence 345667788888887 9999999999999999999999999998874
No 23
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.08 E-value=4.3e-12 Score=106.19 Aligned_cols=61 Identities=18% Similarity=0.432 Sum_probs=56.1
Q ss_pred cccceeeeeeEEEEEEEEeeccccccCCCCcee------ehhhHHHhhhhHHHHHHhhhhhhhhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYGNLAPKTPIGKI------VTMVYALFGIPLMLLCISNLGSLLADTF 121 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~------~~~~~~l~Gi~~~~~~~~~i~~~l~~~~ 121 (185)
+.|++.||+||+++|+|||||||++|.+..||. ++++|+++|+.++++.++.+++.+....
T Consensus 221 E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~~~ 287 (309)
T 3um7_A 221 EDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRVVS 287 (309)
T ss_dssp HCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred cCCCHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999999999999999986 9999999999999999999888776544
No 24
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.06 E-value=2.2e-12 Score=98.00 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=42.1
Q ss_pred hheeeehhhhhhhhhccc-------ccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~w-------~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+++++++++.+++..|+| ++.||+||+++|+|||||||++|.+..||.
T Consensus 59 ~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~ 113 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRC 113 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhHHH
Confidence 344567788889999987 899999999999999999999999998874
No 25
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.03 E-value=4.8e-12 Score=106.23 Aligned_cols=60 Identities=27% Similarity=0.543 Sum_probs=54.8
Q ss_pred cccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADT 120 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~ 120 (185)
+.|++.+|+||+++|+||+||||+.|.|+.||+++++++++|++++++.++.+.+.+...
T Consensus 42 e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (336)
T 1lnq_A 42 EGESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINR 101 (336)
T ss_dssp SSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC---
T ss_pred hCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999999999999999999999999999999999998887764
No 26
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.01 E-value=1.2e-11 Score=102.15 Aligned_cols=58 Identities=26% Similarity=0.521 Sum_probs=54.2
Q ss_pred ccceeeeeeEEEEEEEEeeccccccCCCCc-------eeehhhHHHhhhhHHHHHHhhhhhhhhh
Q psy5555 62 QWSFSGALLYSVTVITTIGYGNLAPKTPIG-------KIVTMVYALFGIPLMLLCISNLGSLLAD 119 (185)
Q Consensus 62 ~w~~~~a~~f~~~t~tTiGyGd~~P~t~~g-------r~~~~~~~l~Gi~~~~~~~~~i~~~l~~ 119 (185)
.|++.||+||+++|+|||||||++|.|+.| |+++++|+++|+.++++.++.+.+.+..
T Consensus 199 ~~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 199 DWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp SCCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred CCchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999999975 9999999999999999999999887654
No 27
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.98 E-value=6.9e-12 Score=104.75 Aligned_cols=61 Identities=30% Similarity=0.487 Sum_probs=56.7
Q ss_pred CcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhh
Q psy5555 60 DRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADT 120 (185)
Q Consensus 60 ~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~ 120 (185)
...+++.+|+||+++|+|||||||++|.++.||+++++.+++|+.+++++++.+...+.+.
T Consensus 78 ~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 78 ARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp SCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4578999999999999999999999999999999999999999999999999888877654
No 28
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.98 E-value=9.4e-12 Score=104.78 Aligned_cols=63 Identities=21% Similarity=0.400 Sum_probs=57.7
Q ss_pred CcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 60 DRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 60 ~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
...|++.+|+||+++|+|||||||+.|.|..||+++++.+++|+.+++++++.+...+.+..+
T Consensus 74 ~~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 74 QFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp CSSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred cCCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999999999999999999999999999999999999999888876543
No 29
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.94 E-value=1.8e-11 Score=103.47 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=57.5
Q ss_pred CcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 60 DRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 60 ~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
...+++.+|+||+++|+|||||||++|.|+.||+++++++++|+.+++++++.+...+.+..+
T Consensus 92 ~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 92 QSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp SSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999998888876543
No 30
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=98.92 E-value=3e-11 Score=101.39 Aligned_cols=48 Identities=29% Similarity=0.451 Sum_probs=43.2
Q ss_pred hheeeehhhhhhhhhcccccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 135 KSGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 135 ~~~~i~~ga~vf~~~e~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+++++++|+++|+..|+|+|.||+||+++|+|||||||++|.+..||.
T Consensus 27 ~~~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~ 74 (336)
T 1lnq_A 27 VLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMY 74 (336)
T ss_dssp TTTSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCHHH
Confidence 455667888899999999999999999999999999999999988874
No 31
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.85 E-value=3.5e-11 Score=101.65 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=56.7
Q ss_pred ccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 62 QWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 62 ~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
..++.+|+||+++|+||+||||+.|.|+.||+++++++++|+.++++.++.+++.+.+..+
T Consensus 159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~ 219 (355)
T 3beh_A 159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR 219 (355)
T ss_dssp HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999999999999999988876544
No 32
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.84 E-value=7.4e-11 Score=105.47 Aligned_cols=57 Identities=21% Similarity=0.527 Sum_probs=51.6
Q ss_pred cccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhh-hhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISN-LGSLL 117 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~-i~~~l 117 (185)
..|+|.+|+||+++|+||+||||+.|.|+.||+++++++++|+.++++.++. +.+.+
T Consensus 48 ~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 48 RAYSFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred CCCchhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999999988877 44443
No 33
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.78 E-value=7.4e-11 Score=105.01 Aligned_cols=64 Identities=28% Similarity=0.417 Sum_probs=58.1
Q ss_pred CCcccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 59 KDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 59 ~~~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
+....++.+|+||+++|+||+||||+.|.|+.||+++++++++|+.+++++++.+.+.+....+
T Consensus 370 ~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~~ 433 (514)
T 2r9r_B 370 DSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYH 433 (514)
T ss_dssp TCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred CccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999999999999999999999999999999999999999887776554
No 34
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=98.69 E-value=3.2e-10 Score=89.96 Aligned_cols=45 Identities=29% Similarity=0.472 Sum_probs=39.6
Q ss_pred eeehhhhhhhhhcc-------cccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 138 YICIGAGVFAAWEE-------WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 138 ~i~~ga~vf~~~e~-------w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
++.+++.+++..|+ |++.||+||+++|+|||||||++|.+..||.
T Consensus 143 ~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~ 194 (223)
T 1orq_C 143 TVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKV 194 (223)
T ss_dssp HHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHH
Confidence 34567777888887 9999999999999999999999999998874
No 35
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.52 E-value=2.1e-09 Score=96.00 Aligned_cols=44 Identities=27% Similarity=0.524 Sum_probs=36.3
Q ss_pred eehhhhhhhh----hcc--cccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 139 ICIGAGVFAA----WEE--WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 139 i~~ga~vf~~----~e~--w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
+++++.+|.. .|+ |+|.||+||+++|+|||||||++|.+..||.
T Consensus 31 ~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~~~ 80 (565)
T 4gx0_A 31 LLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAGYL 80 (565)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccHHH
Confidence 4445554443 676 9999999999999999999999999998874
No 36
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.51 E-value=3.4e-09 Score=89.70 Aligned_cols=62 Identities=23% Similarity=0.334 Sum_probs=55.7
Q ss_pred ccceeeeeeEEEEEEEEeeccccccC--CCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhhh
Q psy5555 62 QWSFSGALLYSVTVITTIGYGNLAPK--TPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQF 123 (185)
Q Consensus 62 ~w~~~~a~~f~~~t~tTiGyGd~~P~--t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~~ 123 (185)
.-++.+|+||+++|+|||||||+.|. ++.|++++.+.+++|+.+.+++++.+...+++..++
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 45789999999999999999999997 688999999999999999999999888888766554
No 37
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.36 E-value=8.5e-09 Score=86.95 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=38.7
Q ss_pred eeehhhhhhhhhccc-------ccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 138 YICIGAGVFAAWEEW-------SFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 138 ~i~~ga~vf~~~e~w-------~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
.+.++|.+++..|++ ++.||+||+++|+|||||||++|.+..||.
T Consensus 139 ~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~ 190 (355)
T 3beh_A 139 VLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRV 190 (355)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhHHH
Confidence 445667777888875 889999999999999999999999988874
No 38
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.33 E-value=1.1e-08 Score=86.73 Aligned_cols=62 Identities=24% Similarity=0.350 Sum_probs=54.8
Q ss_pred ccceeeeeeEEEEEEEEeeccccccC--CCCceeehhhHHHhhhhHHHHHHhhhhhhhhhhhhh
Q psy5555 62 QWSFSGALLYSVTVITTIGYGNLAPK--TPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQF 123 (185)
Q Consensus 62 ~w~~~~a~~f~~~t~tTiGyGd~~P~--t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~~ 123 (185)
.-++.+|+||+++|+|||||||+.|. ++.|++++.+-+++|+.+.+++++.+...+++..++
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 44789999999999999999999974 899999999999999999999999888877765443
No 39
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.31 E-value=1.2e-08 Score=84.98 Aligned_cols=31 Identities=39% Similarity=0.682 Sum_probs=29.3
Q ss_pred cccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 152 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 152 w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
++|.||+||+++|+|||||||++|.+..||.
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~ 111 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLANT 111 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHHHH
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHHHH
Confidence 8999999999999999999999999988874
No 40
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.16 E-value=4.2e-08 Score=82.82 Aligned_cols=32 Identities=28% Similarity=0.638 Sum_probs=29.5
Q ss_pred ccccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 151 EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 151 ~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
.++|.||+||+++|+|||||||++|.+..||.
T Consensus 94 ~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~ 125 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVGYGDMHPQTVYAHA 125 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHH
T ss_pred CCcHHHhHhhhheeeeecCCCCCcCCCHHHHH
Confidence 36899999999999999999999999988874
No 41
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.13 E-value=6.3e-08 Score=81.38 Aligned_cols=31 Identities=29% Similarity=0.600 Sum_probs=29.5
Q ss_pred ccccccceeEEEEEeeeeecccCCCCccccc
Q psy5555 151 EWSFLDGAYFCFVTLSTIGFGDLVPGKSFQR 181 (185)
Q Consensus 151 ~w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~ 181 (185)
+|+|.||+||+++|+|||||||++|.+..||
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr 106 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYAH 106 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHHH
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHHH
Confidence 5799999999999999999999999999887
No 42
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=97.65 E-value=1.3e-06 Score=77.64 Aligned_cols=31 Identities=29% Similarity=0.558 Sum_probs=28.3
Q ss_pred cccccceeEEEEEeeeeecccCCCCcccccc
Q psy5555 152 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQRT 182 (185)
Q Consensus 152 w~~~~a~Yf~fiTltTVGfGD~vP~~~~~~~ 182 (185)
.++.+|+||+++|+|||||||++|.+..||.
T Consensus 374 ~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~ 404 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVGYGDMVPTTIGGKI 404 (514)
T ss_dssp SSHHHHHHHHHHHHTTCCCSSSCCCSHHHHH
T ss_pred cchhhhhheeeeEEEecccCCCCCCCcchHh
Confidence 3899999999999999999999999988763
No 43
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=97.37 E-value=6.1e-06 Score=69.72 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=25.9
Q ss_pred cccccceeEEEEEeeeeecccCCCCc--cccc
Q psy5555 152 WSFLDGAYFCFVTLSTIGFGDLVPGK--SFQR 181 (185)
Q Consensus 152 w~~~~a~Yf~fiTltTVGfGD~vP~~--~~~~ 181 (185)
-+|.+++||+++|+|||||||+.|.+ +.|+
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~ 121 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGI 121 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHH
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHH
Confidence 47899999999999999999999974 4454
No 44
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.17 E-value=7.4e-06 Score=66.96 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=50.2
Q ss_pred cccceeeeeeEEEEEEEEeecc-ccc-cCCCCc----eeehhhHHHhhhhHHHHHHhhhhhhhhhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYG-NLA-PKTPIG----KIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyG-d~~-P~t~~g----r~~~~~~~l~Gi~~~~~~~~~i~~~l~~~~~ 122 (185)
+.-++++|+||+++++||+||| |+. |.+..| +.+.++.++.|+.++.++++.+.+.+.+..+
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~ 244 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQ 244 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999 986 887766 7788888889999999999999888876543
No 45
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.16 E-value=1e-05 Score=68.42 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=25.7
Q ss_pred cccccceeEEEEEeeeeecccCCCC--ccccc
Q psy5555 152 WSFLDGAYFCFVTLSTIGFGDLVPG--KSFQR 181 (185)
Q Consensus 152 w~~~~a~Yf~fiTltTVGfGD~vP~--~~~~~ 181 (185)
-+|.+++||+++|+|||||||+.|. ++.|+
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~ 124 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLAV 124 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHHH
Confidence 5789999999999999999999975 45554
No 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=90.86 E-value=0.0044 Score=50.27 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=25.1
Q ss_pred cccccceeEEEEEeeeeecc-cCC-CCcccc
Q psy5555 152 WSFLDGAYFCFVTLSTIGFG-DLV-PGKSFQ 180 (185)
Q Consensus 152 w~~~~a~Yf~fiTltTVGfG-D~v-P~~~~~ 180 (185)
-++.+|+|+.++++||+||| |++ |.+..|
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~ 209 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVY 209 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcC
Confidence 56788999999999999999 997 776654
No 47
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=78.37 E-value=0.091 Score=47.98 Aligned_cols=58 Identities=21% Similarity=0.431 Sum_probs=46.7
Q ss_pred cccceeeeeeEEEEEEEEeeccccccCCCCceeehhhHHHhhhhHHHHHHhhhhhhhhh
Q psy5555 61 RQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLAD 119 (185)
Q Consensus 61 ~~w~~~~a~~f~~~t~tTiGyGd~~P~t~~gr~~~~~~~l~Gi~~~~~~~~~i~~~l~~ 119 (185)
...++.+++|+++.+++..| ++..|.+..+|++.++|.++++.+.....+.+.+.+..
T Consensus 560 ~~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 617 (823)
T 3kg2_A 560 NEFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV 617 (823)
T ss_dssp HHHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 35567889999999998888 78899999999999999999999999999999988864
No 48
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=58.02 E-value=0.3 Score=37.96 Aligned_cols=59 Identities=14% Similarity=0.110 Sum_probs=38.5
Q ss_pred CcccceeeeeeEEEEEEEEeecccccc----CCCCceeehhhHHHhh-hhHHHHHHhhhhhhhh
Q psy5555 60 DRQWSFSGALLYSVTVITTIGYGNLAP----KTPIGKIVTMVYALFG-IPLMLLCISNLGSLLA 118 (185)
Q Consensus 60 ~~~w~~~~a~~f~~~t~tTiGyGd~~P----~t~~gr~~~~~~~l~G-i~~~~~~~~~i~~~l~ 118 (185)
.+.-++++|++..+.++|+-|++|+.. .++.+.++.+.|.++| ..+.-++++.+.+.+.
T Consensus 161 ~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~ 224 (229)
T 4dxw_A 161 SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVI 224 (229)
T ss_dssp TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345579999999999999999999732 3445555544444444 4445556555555444
Done!