RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5555
(185 letters)
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 129 bits (324), Expect = 3e-37
Identities = 52/194 (26%), Positives = 91/194 (46%), Gaps = 20/194 (10%)
Query: 11 RKQEDVERLNVLYEQNWTTLVTEQLRRFESNVIEMSSQLGYNGRDPADKDRQWSFSGALL 70
++++ +L + + L +QL +F V+E +S G + A + W F+ AL
Sbjct: 41 LLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLE-ASNYGVSVLSQASGNWNWDFTSALF 99
Query: 71 YSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQFTYSHSCC 130
++ TV++T GYG+ P + GK ++Y++ GIP LL ++ + +
Sbjct: 100 FASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVTRRPVLYFH 159
Query: 131 ASRQKS------------------GYICIGAGVFAAWEE-WSFLDGAYFCFVTLSTIGFG 171
S + I A VF+ E+ W+FL+ YFCF++LSTIG G
Sbjct: 160 IRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLG 219
Query: 172 DLVPGKSFQRTDTQ 185
D VPG+ + + +
Sbjct: 220 DYVPGEGYNQKFRE 233
Score = 50.2 bits (119), Expect = 6e-08
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
Query: 61 RQWSFSGALLYSVTVITTIGYGNLAPKT-------PIGKIVTMVYALFGIPLMLLCISNL 113
W+F + + ++TIG G+ P + KI Y L G+ ML+ +
Sbjct: 198 DDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETF 257
Query: 114 GSLL 117
L
Sbjct: 258 CELH 261
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 116 bits (292), Expect = 3e-32
Identities = 46/194 (23%), Positives = 78/194 (40%), Gaps = 22/194 (11%)
Query: 11 RKQEDVERLNVLYEQNWTTLVTEQLRRFESNVIEMSSQL--GYNGRDPADKDRQWSFSGA 68
+ Q ++ + + + + ++L V + W A
Sbjct: 60 QAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSSHSAWDLGSA 119
Query: 69 LLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQFTYSHS 128
+S T+ITTIGYGN+A +T G++ + YAL GIPL + ++ +G L + + H
Sbjct: 120 FFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHI 179
Query: 129 CCASRQ--------------------KSGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTI 168
+ ++ VF E+WS L+ YF VTL+T+
Sbjct: 180 EAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTV 239
Query: 169 GFGDLVPGKSFQRT 182
GFGD V G ++
Sbjct: 240 GFGDYVAGADPRQD 253
Score = 44.1 bits (103), Expect = 8e-06
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 62 QWSFSGALLYSVTVITTIGYGNLAPKT------PIGKIVTMVYALFGIPLMLLCISNLGS 115
WS A+ + + +TT+G+G+ P + + + L G+ ++ +G+
Sbjct: 222 DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGN 281
Query: 116 LLADTFQ 122
L +
Sbjct: 282 WLRVVSR 288
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 60.1 bits (146), Expect = 7e-13
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLL 117
S++ +L ++ I T+GYG+ +P TP+G T + GI + + L L
Sbjct: 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
Score = 56.6 bits (137), Expect = 2e-11
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 137 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 175
I G F E S+ Y+ FVT++T+G+GD P
Sbjct: 12 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 50
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 60.3 bits (146), Expect = 1e-12
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS 115
AL +SV +TT+G GN +P+T GKI T++Y GI L+ I L
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 100
Score = 56.8 bits (137), Expect = 3e-11
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 138 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP----GKSF 179
+ G ++ E +D YF VTL+T+G G+ P GK F
Sbjct: 34 TLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFGKIF 79
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 59.5 bits (144), Expect = 2e-12
Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS 115
AL +SV +TT+GYG+ +P+T GKI T++Y GI L+ I L
Sbjct: 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAV 83
Score = 54.4 bits (131), Expect = 1e-10
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 138 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP----GKSF 179
+ G ++ E +D YF VTL+T+G+GD P GK F
Sbjct: 17 TLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKIF 62
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 60.7 bits (147), Expect = 2e-12
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGS 115
AL +SV +TT+G GN +P+T GK+ T++Y GI L+ I L
Sbjct: 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAV 103
Score = 56.9 bits (137), Expect = 6e-11
Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 138 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP----GKSF 179
+ G ++ E LD YF VTL+T+G G+ P GK F
Sbjct: 37 TLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFGKVF 82
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 60.9 bits (148), Expect = 1e-11
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLL 117
S++ +L ++ I T+GYG+ +P TP+G T+ + GI + + L L
Sbjct: 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 98
Score = 49.8 bits (119), Expect = 9e-08
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 137 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 175
I G F E S+ Y+ FVT++T+G+GD P
Sbjct: 29 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 67
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 53.0 bits (127), Expect = 1e-09
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 42 VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALF 101
V+ S L A + ++ AL +SV TT+GYG+L P T G++V +V +
Sbjct: 18 VLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVA 77
Query: 102 GIPLMLLCISNLGSLLADTFQ 122
GI L + L + Q
Sbjct: 78 GITSFGLVTAALATWFVGREQ 98
Score = 33.7 bits (77), Expect = 0.013
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
++ ++ T +T+G+GDL P
Sbjct: 40 TYPRALWWSVETATTVGYGDLYP 62
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 53.0 bits (127), Expect = 2e-09
Identities = 24/81 (29%), Positives = 37/81 (45%)
Query: 42 VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALF 101
V+ S L A + ++ AL +SV TT+GYG+L P T G++V +V +
Sbjct: 45 VLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVA 104
Query: 102 GIPLMLLCISNLGSLLADTFQ 122
GI L + L + Q
Sbjct: 105 GITSFGLVTAALATWFVGQEQ 125
Score = 32.6 bits (74), Expect = 0.035
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
++ ++ T +T+G+GDL P
Sbjct: 67 TYPRALWWSVETATTVGYGDLYP 89
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 50.9 bits (122), Expect = 4e-09
Identities = 21/81 (25%), Positives = 34/81 (41%)
Query: 42 VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALF 101
V+E +S+ A S+ A+ +SV TT+GYG+ P T G+ V
Sbjct: 18 VLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKA 77
Query: 102 GIPLMLLCISNLGSLLADTFQ 122
GI + L + L + +
Sbjct: 78 GIEVFALVTAALATDFVRREE 98
Score = 33.2 bits (76), Expect = 0.011
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
S+ D ++ T +T+G+GD P
Sbjct: 40 SYPDAIWWSVETATTVGYGDRYP 62
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 50.1 bits (120), Expect = 1e-08
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 42 VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALF 101
V+ S L A + ++ AL ++ TT+ YG+L P T G++V +V +
Sbjct: 39 VLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVA 98
Query: 102 GIPLMLLCISNLGSLLADTFQ 122
GI L + L + Q
Sbjct: 99 GITSFGLVTAALATWFVGREQ 119
Score = 32.0 bits (73), Expect = 0.039
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
++ ++ T +T+ +GDL P
Sbjct: 61 TYPRALWWACETATTVAYGDLYP 83
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 50.6 bits (121), Expect = 1e-08
Identities = 24/81 (29%), Positives = 35/81 (43%)
Query: 42 VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALF 101
V+ S L A S+ AL +SV TT+GYG+L P T G+ V +V +
Sbjct: 62 VLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVA 121
Query: 102 GIPLMLLCISNLGSLLADTFQ 122
GI L + + + Q
Sbjct: 122 GITSYGLVFAAVATWFVGREQ 142
Score = 32.1 bits (73), Expect = 0.045
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
S+ D ++ T +T+G+GDL P
Sbjct: 84 SYPDALWWSVETATTVGYGDLYP 106
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 50.8 bits (121), Expect = 4e-08
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 27 WTTLVTEQLRRFESNVIEMSSQLG-------YNGRDPADKDRQWSFSGALLYSVTVITTI 79
+ L+T F + + + D + R SF+ A +SV + TI
Sbjct: 38 YHDLLTVSWPVFITLITGLYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATI 97
Query: 80 GYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQFTYSHSCCASRQKSGYI 139
GYG L P P+ + + AL G+ + + S + + S G
Sbjct: 98 GYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPTAGVLFSSRMVISDFEGKP 157
Query: 140 CI 141
+
Sbjct: 158 TL 159
Score = 33.9 bits (77), Expect = 0.019
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 138 YICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 175
Y+ G V SF D +F T++TIG+G L+P
Sbjct: 68 YLACG-DVIENARPGSFTDAFFFSVQTMATIGYGKLIP 104
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 50.2 bits (119), Expect = 6e-08
Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 7/122 (5%)
Query: 27 WTTLVTEQLRRFESN-------VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTI 79
+ + F ++ + + L G P F GA +SV + T+
Sbjct: 52 YYWALKVSWPVFFASLAALFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATV 111
Query: 80 GYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQFTYSHSCCASRQKSGYI 139
GYG++ P+T + + G+ + L + + A R +G +
Sbjct: 112 GYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRAKIMFARHAIVRPFNGRM 171
Query: 140 CI 141
+
Sbjct: 172 TL 173
Score = 32.5 bits (73), Expect = 0.063
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
F+ +F TL+T+G+GD+ P
Sbjct: 96 GFVGAFFFSVETLATVGYGDMHP 118
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 47.4 bits (112), Expect = 5e-07
Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 13/128 (10%)
Query: 16 VERLNVLYEQN------WTTLVTEQLRRFESNVIEM-------SSQLGYNGRDPADKDRQ 62
V+ N+ E + +TTLV + R F ++ + + L G P
Sbjct: 17 VQHGNLGSETSRYLSDLFTTLVDLKWRWFFVSLAVLFLLLNTAFATLYMLGSAPIANQFP 76
Query: 63 WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122
F GA +SV + T+GYG++ P+T + + G+ + L ++ +
Sbjct: 77 AGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136
Query: 123 FTYSHSCC 130
+
Sbjct: 137 RAETLMFS 144
Score = 31.6 bits (71), Expect = 0.13
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 149 WEEWSFLDGAYFCFVTLSTIGFGDLVP 175
F +F TL+T+G+GD+ P
Sbjct: 74 QFPAGFGGAFFFSVETLATVGYGDMHP 100
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 46.2 bits (109), Expect = 2e-06
Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 71 YSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQFTYSH 127
++V +TT+GYG++ P T GKIV + A+ G+ + L + ++ F + Y
Sbjct: 382 WAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPV----PVIVSNFNYFYHR 434
Score = 31.6 bits (71), Expect = 0.12
Identities = 8/20 (40%), Positives = 16/20 (80%)
Query: 156 DGAYFCFVTLSTIGFGDLVP 175
D ++ V+++T+G+GD+VP
Sbjct: 378 DAFWWAVVSMTTVGYGDMVP 397
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 45.6 bits (108), Expect = 2e-06
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLLADTFQ 122
S A+ ++V ++T GYG+ P++ G+++ + GI + L L + +
Sbjct: 161 SIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR 219
Score = 32.9 bits (75), Expect = 0.042
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
S ++ VTLST G+GD +P
Sbjct: 161 SIPQAMWWAVVTLSTTGYGDTIP 183
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 44.9 bits (107), Expect = 3e-06
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 64 SFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGI 103
S AL ++V TT+GYG++ P TPIGK++ + L GI
Sbjct: 165 SVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGI 204
Score = 34.5 bits (80), Expect = 0.009
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 153 SFLDGAYFCFVTLSTIGFGDLVP 175
S D ++ VT +T+G+GD+VP
Sbjct: 165 SVFDALWWAVVTATTVGYGDVVP 187
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 39.0 bits (90), Expect = 5e-04
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 64 SFSGALLYSVTVITTIGYGNLAP--KTPIGKIVTMVYALFGIPLMLLCIS 111
F A L+S+ TTIGYG K P G I+ ++ ++ G + +
Sbjct: 91 GFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVG 140
Score = 32.0 bits (72), Expect = 0.088
Identities = 13/84 (15%), Positives = 26/84 (30%), Gaps = 9/84 (10%)
Query: 95 TMVYALFGIPLMLLCISNLGSLLADTFQF---TYSHSCCASRQKSGYICIGAGVFAAWEE 151
T+V + L++ + + L + Y + + +
Sbjct: 36 TLVDLKWRFNLLIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVTNLN----- 90
Query: 152 WSFLDGAYFCFVTLSTIGFGDLVP 175
F+ F T +TIG+G V
Sbjct: 91 -GFVSAFLFSIETETTIGYGYRVI 113
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 37.4 bits (86), Expect = 0.001
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 64 SFSGALLYSVTVITTIGYGNLA--PKTPIGKIVTMVYALFGIPLMLLCIS 111
F A L+S+ TTIGYG + P+ + +V ++ G + I
Sbjct: 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIG 143
Score = 29.7 bits (66), Expect = 0.58
Identities = 15/81 (18%), Positives = 24/81 (29%), Gaps = 2/81 (2%)
Query: 95 TMVYALFGIPLMLLCISNLGSLLADTFQFTYSHSCCASRQKSGYICIGAGVFAAWEEWSF 154
T V + L+L ++ L S L F + + F
Sbjct: 38 TCVDIRWRYMLLLFSLAFLVSWLL--FGLIFWLIALIHGDLENPGGDDTFKPCVLQVNGF 95
Query: 155 LDGAYFCFVTLSTIGFGDLVP 175
+ F T +TIG+G
Sbjct: 96 VAAFLFSIETQTTIGYGFRCV 116
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.63
Identities = 28/225 (12%), Positives = 51/225 (22%), Gaps = 93/225 (41%)
Query: 35 LRRFESNVIE------MSSQLGYNGRDPADKDRQW--SFSGALLYSVTVITTIGYGNLAP 86
L FE+ +E ++++L K ++ ++ A + + L
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 87 KTPIGKIVTMVYALFG-----------------------IPLMLLCISNLGSLLADT--F 121
G + A+FG L+ L L+ T
Sbjct: 148 AVGEGN--AQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDA 205
Query: 122 QFTYSH-------------------------SC-----------CASRQKSGY------- 138
+ ++ SC + + G+
Sbjct: 206 EKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS 265
Query: 139 -----ICIGAGVFAA--------WEEWSFLDGAYFCFVTLSTIGF 170
G+ A WE SF L IG
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWE--SFFVSVRKAITVLFFIGV 308
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.8 bits (60), Expect = 4.7
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 7/31 (22%)
Query: 90 IGKIVTMVYA-LFGIPLML-----LCISNLG 114
I ++ + +PL L L I L
Sbjct: 794 IPELTPYLIYITVSVPLPLGCITILFI-ELC 823
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 26.4 bits (59), Expect = 7.9
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 90 IGKIVTMVYA-LFGIPLML-----LCISNLG 114
I +I + + +PL L LCI +LG
Sbjct: 789 IPEITPFLVFIIGNVPLPLGTVTILCI-DLG 818
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.429
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,865,081
Number of extensions: 156312
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 45
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.9 bits)