RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5555
         (185 letters)



>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
           {Archaeon Methanothermobacter thermautotrophicus [TaxId:
           145262]}
          Length = 80

 Score = 60.5 bits (147), Expect = 2e-13
 Identities = 16/55 (29%), Positives = 29/55 (52%)

Query: 63  WSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCISNLGSLL 117
            S++ +L ++   I T+GYG+ +P TP+G   T+   + GI    + +  L   L
Sbjct: 26  ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80



 Score = 52.0 bits (125), Expect = 4e-10
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 137 GYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGDLVP 175
             I  G   F   E  S+    Y+ FVT++T+G+GD  P
Sbjct: 11  AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP 49


>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
           kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
           188]}
          Length = 116

 Score = 45.0 bits (106), Expect = 3e-07
 Identities = 19/68 (27%), Positives = 31/68 (45%)

Query: 51  YNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALFGIPLMLLCI 110
               D  +  R  SF+ A  +SV  + TIGYG L P  P+   +  + AL G+  + +  
Sbjct: 47  LACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 106

Query: 111 SNLGSLLA 118
           S + +   
Sbjct: 107 SLIYARFT 114



 Score = 26.9 bits (59), Expect = 0.75
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 150 EEWSFLDGAYFCFVTLSTIGFGDLVP 175
              SF D  +F   T++TIG+G L+P
Sbjct: 57  RPGSFTDAFFFSVQTMATIGYGKLIP 82


>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
           coelicolor [TaxId: 1902]}
          Length = 103

 Score = 43.8 bits (103), Expect = 6e-07
 Identities = 24/81 (29%), Positives = 36/81 (44%)

Query: 42  VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALF 101
           V+   S L       A   +  ++  AL +SV   TT+GYG+L P T  G+ V +V  + 
Sbjct: 18  VLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVA 77

Query: 102 GIPLMLLCISNLGSLLADTFQ 122
           GI    L  + L +      Q
Sbjct: 78  GITSFGLVTAALATWFVGREQ 98



 Score = 26.4 bits (58), Expect = 1.1
 Identities = 8/30 (26%), Positives = 16/30 (53%)

Query: 152 WSFLDGAYFCFVTLSTIGFGDLVPGKSFQR 181
            ++    ++   T +T+G+GDL P   + R
Sbjct: 39  ITYPRALWWSVETATTVGYGDLYPVTLWGR 68


>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
           Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
          Length = 116

 Score = 43.8 bits (103), Expect = 8e-07
 Identities = 17/77 (22%), Positives = 31/77 (40%)

Query: 42  VIEMSSQLGYNGRDPADKDRQWSFSGALLYSVTVITTIGYGNLAPKTPIGKIVTMVYALF 101
              + + L   G  P        F GA  +SV  + T+GYG++ P+T     +  +    
Sbjct: 39  NNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFV 98

Query: 102 GIPLMLLCISNLGSLLA 118
           G+  + L    + +  A
Sbjct: 99  GMSGIALSTGLVFARFA 115



 Score = 29.2 bits (65), Expect = 0.14
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 136 SGYICIGAGVFAAWEEWSFLDGAYFCFVTLSTIGFGD 172
           +    +G    A      F+   +F   TL+T+G+GD
Sbjct: 44  ALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGD 80


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.429 

Gapped
Lambda     K      H
   0.267   0.0566    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,426
Number of extensions: 30508
Number of successful extensions: 73
Number of sequences better than 10.0: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 9
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.4 bits)