Query psy5556
Match_columns 115
No_of_seqs 5 out of 7
Neff 1.6
Searched_HMMs 29240
Date Fri Aug 16 20:33:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bm5_A MFPA, RV3361C, pentapep 30.6 1.1E+02 0.0037 20.4 5.1 25 37-61 67-91 (186)
2 3jvv_A Twitching mobility prot 13.1 81 0.0028 24.2 1.6 14 102-115 122-135 (356)
3 3lnc_A Guanylate kinase, GMP k 12.4 85 0.0029 21.1 1.4 11 105-115 29-39 (231)
4 1p9r_A General secretion pathw 10.9 1E+02 0.0035 24.3 1.6 13 103-115 167-179 (418)
5 2ehv_A Hypothetical protein PH 9.5 1.4E+02 0.0046 19.5 1.6 11 105-115 32-42 (251)
6 2ewv_A Twitching motility prot 9.1 1.3E+02 0.0046 22.8 1.6 13 103-115 136-148 (372)
7 3n90_A P15, thylakoid lumenal 9.1 4.2E+02 0.014 17.1 5.5 98 7-104 13-111 (152)
8 3ec2_A DNA replication protein 7.8 1.7E+02 0.0058 18.6 1.5 11 105-115 40-50 (180)
9 2xt2_A ALBG, MCBG-like protein 7.5 5.1E+02 0.017 16.7 6.4 100 7-106 76-181 (200)
10 4eun_A Thermoresistant glucoki 7.0 2.1E+02 0.0071 18.7 1.6 11 105-115 31-41 (200)
No 1
>2bm5_A MFPA, RV3361C, pentapeptide repeat family protein; pentapeptide repeat protein, fluroquinolone resistance, DNA gyrase, DNA mimicry; 2.0A {Mycobacterium tuberculosis} SCOP: b.80.8.1 PDB: 2bm4_A 2bm6_A 2bm7_A
Probab=30.64 E-value=1.1e+02 Score=20.38 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=9.4
Q ss_pred ceecccCCCcceeecCCCCcceeec
Q psy5556 37 LRNCNTGGLGLRNCNTGGLGLRSCN 61 (115)
Q Consensus 37 Lr~C~tsG~~Lr~C~gsG~~Lr~Ct 61 (115)
++.|.-.+--+..|.-.+..+.-|.
T Consensus 67 f~~~~l~~~~f~~~~l~~~~f~~~~ 91 (186)
T 2bm5_A 67 FAQCSMLGSVFVACRLRPLTLDDVD 91 (186)
T ss_dssp EEEEECTTCEEESCBCCSCEEEEEE
T ss_pred cCCCCcCCCcccCCeeccCEEeccC
Confidence 3333333333333333333333333
No 2
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=13.10 E-value=81 Score=24.19 Aligned_cols=14 Identities=64% Similarity=1.037 Sum_probs=11.9
Q ss_pred ccceeeeecCCCCC
Q psy5556 102 TRGLVAFTGPTQAG 115 (115)
Q Consensus 102 t~g~~~~~~~~~~~ 115 (115)
..|.|+++|||.+|
T Consensus 122 ~~g~i~I~GptGSG 135 (356)
T 3jvv_A 122 PRGLVLVTGPTGSG 135 (356)
T ss_dssp SSEEEEEECSTTSC
T ss_pred CCCEEEEECCCCCC
Confidence 35689999999987
No 3
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=12.36 E-value=85 Score=21.08 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=7.9
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.++++||+.||
T Consensus 29 ii~l~Gp~GsG 39 (231)
T 3lnc_A 29 ILVLSSPSGCG 39 (231)
T ss_dssp EEEEECSCC--
T ss_pred EEEEECCCCCC
Confidence 58899999987
No 4
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=10.88 E-value=1e+02 Score=24.27 Aligned_cols=13 Identities=46% Similarity=0.971 Sum_probs=0.0
Q ss_pred cceeeeecCCCCC
Q psy5556 103 RGLVAFTGPTQAG 115 (115)
Q Consensus 103 ~g~~~~~~~~~~~ 115 (115)
.+.++++|||.+|
T Consensus 167 ggii~I~GpnGSG 179 (418)
T 1p9r_A 167 HGIILVTGPTGSG 179 (418)
T ss_dssp SEEEEEECSTTSC
T ss_pred CCeEEEECCCCCC
No 5
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=9.50 E-value=1.4e+02 Score=19.53 Aligned_cols=11 Identities=45% Similarity=0.579 Sum_probs=0.0
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.+++.||+.||
T Consensus 32 ~~~l~GpnGsG 42 (251)
T 2ehv_A 32 TVLLTGGTGTG 42 (251)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEEeCCCCC
No 6
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=9.15 E-value=1.3e+02 Score=22.76 Aligned_cols=13 Identities=54% Similarity=0.943 Sum_probs=0.0
Q ss_pred cceeeeecCCCCC
Q psy5556 103 RGLVAFTGPTQAG 115 (115)
Q Consensus 103 ~g~~~~~~~~~~~ 115 (115)
.+.|+++|||.+|
T Consensus 136 g~~i~ivG~~GsG 148 (372)
T 2ewv_A 136 MGLILVTGPTGSG 148 (372)
T ss_dssp SEEEEEECSSSSS
T ss_pred CCEEEEECCCCCC
No 7
>3n90_A P15, thylakoid lumenal 15 kDa protein 1, chloroplastic; right-handed quadrilateral beta helix; 1.70A {Arabidopsis thaliana} SCOP: b.80.8.0
Probab=9.08 E-value=4.2e+02 Score=17.08 Aligned_cols=98 Identities=13% Similarity=0.167 Sum_probs=0.0
Q ss_pred ceecCCCCCCcccccCCCCcceecccCCccceecccCCCcceeecCCCCcceeeccCCCcceeccCCCCCCcccccCCCC
Q psy5556 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLGLRNCNTGGLGLRNCNTGGLG 86 (115)
Q Consensus 7 lr~c~t~g~~lr~cttsG~~Lr~C~tsG~~Lr~C~tsG~~Lr~C~gsG~~Lr~Ct~sG~~Lr~Cttsg~~lr~ctt~g~~ 86 (115)
++.|.=++-.+..+.-++.-+..|.-.+--+..|.-.+--+..|.-.+--+.-|.-.+-.+..|.-.+-.++.|.-.+--
T Consensus 13 ~~~~~l~~~~f~~~~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a~l~~a~ 92 (152)
T 3n90_A 13 TRGQDLSGKDFSGQTLIRQDFKTSILRQANFKGAKLLGASFFDADLTGADLSEADLRGADFSLANVTKVNLTNANLEGAT 92 (152)
T ss_dssp HTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCBCTTCB
T ss_pred EcCCCccCCcCCCCCcCcCccCCCeeCCCEeCCCCCCCCCccccCcCCCEeCCCCcCCCCCCCCCcCCCCcCCCCCCCCE
Q ss_pred Cc-ccccCCCCcccccccc
Q psy5556 87 LR-NCNTGGLGLRNCNTRG 104 (115)
Q Consensus 87 lr-~ctt~g~~lr~ctt~g 104 (115)
+. .+.-.+--|+.+.-++
T Consensus 93 ~~g~~~~~~a~l~~a~~~~ 111 (152)
T 3n90_A 93 MMGNTSFKGSNITGADFTD 111 (152)
T ss_dssp CCSSCBCTTCBCTTCBCTT
T ss_pred EcCCceECCCEecCCEecC
No 8
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=7.77 E-value=1.7e+02 Score=18.57 Aligned_cols=11 Identities=27% Similarity=0.540 Sum_probs=0.0
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.+.+.||+.+|
T Consensus 40 ~~~l~G~~G~G 50 (180)
T 3ec2_A 40 GLTFVGSPGVG 50 (180)
T ss_dssp EEEECCSSSSS
T ss_pred EEEEECCCCCC
No 9
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Probab=7.48 E-value=5.1e+02 Score=16.71 Aligned_cols=100 Identities=10% Similarity=0.220 Sum_probs=0.0
Q ss_pred ceecCCCCCCccccc------CCCCcceecccCCccceecccCCCcceeecCCCCcceeeccCCCcceeccCCCCCCccc
Q psy5556 7 LRNCNTGGLGLRNCN------TGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLGLRNCNTGGLGLRNC 80 (115)
Q Consensus 7 lr~c~t~g~~lr~ct------tsG~~Lr~C~tsG~~Lr~C~tsG~~Lr~C~gsG~~Lr~Ct~sG~~Lr~Cttsg~~lr~c 80 (115)
++.|.-.+-.+..++ -.+.-+..|.-.+-.++...-.+.-+..|.=.+-.+.-+.-.+..++.|.-.+-.+..+
T Consensus 76 f~~~~l~~a~f~~a~~~~~~~l~~~~f~~~~l~~a~f~~a~l~~~~f~~~~l~~a~f~~a~l~~a~f~~a~l~~a~f~~a 155 (200)
T 2xt2_A 76 FVDCKMLGVNWTSAQWPSVKMEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKGSTFHNT 155 (200)
T ss_dssp EESCBCTTCBGGGSCCCSSCCTTSEEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCBCTTCBCTTCBCSSC
T ss_pred EEcCEecCCccccCcccccccccceEEEcCcccccEEccCccCCCEecCCEeecccCCCCccccCCccCcccCCCCccCC
Q ss_pred ccCCCCCcccccCCCCccccccccee
Q psy5556 81 NTGGLGLRNCNTGGLGLRNCNTRGLV 106 (115)
Q Consensus 81 tt~g~~lr~ctt~g~~lr~ctt~g~~ 106 (115)
.-.+--++.+.-.+.-++...-+|..
T Consensus 156 ~l~~a~f~~a~l~~~~~~~~~l~ga~ 181 (200)
T 2xt2_A 156 KLTGASFIDAVNYHIDIFHNDIKRAR 181 (200)
T ss_dssp BCTTCBCTTCBSCCCCTTSSBCTTCE
T ss_pred ccccCCcCCCCccccccccccccCcE
No 10
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=6.99 E-value=2.1e+02 Score=18.74 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=0.0
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.++++||+.||
T Consensus 31 ~i~l~G~~GsG 41 (200)
T 4eun_A 31 HVVVMGVSGSG 41 (200)
T ss_dssp EEEEECCTTSC
T ss_pred EEEEECCCCCC
Done!