Query psy5556
Match_columns 115
No_of_seqs 5 out of 7
Neff 1.6
Searched_HMMs 13730
Date Fri Aug 16 20:33:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5556.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5556hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1p9ra_ c.37.1.11 (A:) Extrace 31.2 9.3 0.00068 27.8 1.6 15 101-115 156-170 (401)
2 d1gvnb_ c.37.1.21 (B:) Plasmid 6.6 1E+02 0.0076 18.6 1.6 11 105-115 34-44 (273)
3 d1fnna2 c.37.1.20 (A:1-276) CD 6.5 1.4E+02 0.01 17.7 2.1 15 101-115 41-55 (276)
4 d2f3la1 b.80.8.1 (A:7-138) Lum 6.3 2.6E+02 0.019 15.9 5.8 80 10-89 6-85 (132)
5 d1sgwa_ c.37.1.12 (A:) Putativ 6.0 1.1E+02 0.0077 19.8 1.4 11 105-115 29-39 (200)
6 d1ofha_ c.37.1.20 (A:) HslU {H 5.7 1.2E+02 0.0084 20.5 1.6 13 103-115 49-61 (309)
7 d1mv5a_ c.37.1.12 (A:) Multidr 5.2 1.2E+02 0.009 20.3 1.4 11 105-115 30-40 (242)
8 d2pmka1 c.37.1.12 (A:467-707) 5.2 1.3E+02 0.0091 20.4 1.5 11 105-115 31-41 (241)
9 d1ji0a_ c.37.1.12 (A:) Branche 5.1 1.3E+02 0.0092 20.2 1.5 11 105-115 34-44 (240)
10 d2p67a1 c.37.1.10 (A:1-327) LA 5.0 1.2E+02 0.0085 21.4 1.3 10 106-115 57-66 (327)
No 1
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=31.16 E-value=9.3 Score=27.79 Aligned_cols=15 Identities=40% Similarity=0.851 Sum_probs=13.0
Q ss_pred cccceeeeecCCCCC
Q psy5556 101 NTRGLVAFTGPTQAG 115 (115)
Q Consensus 101 tt~g~~~~~~~~~~~ 115 (115)
..+|+|.|+|||.+|
T Consensus 156 ~~~GliLvtGpTGSG 170 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSG 170 (401)
T ss_dssp SSSEEEEEECSTTSC
T ss_pred hhhceEEEEcCCCCC
Confidence 357999999999987
No 2
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=6.60 E-value=1e+02 Score=18.65 Aligned_cols=11 Identities=18% Similarity=0.359 Sum_probs=9.3
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
+|.+.||+.+|
T Consensus 34 ~ilL~GpPGtG 44 (273)
T d1gvnb_ 34 AFLLGGQPGSG 44 (273)
T ss_dssp EEEEECCTTSC
T ss_pred EEEEECCCCCC
Confidence 47899999987
No 3
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=6.50 E-value=1.4e+02 Score=17.70 Aligned_cols=15 Identities=13% Similarity=0.195 Sum_probs=11.7
Q ss_pred cccceeeeecCCCCC
Q psy5556 101 NTRGLVAFTGPTQAG 115 (115)
Q Consensus 101 tt~g~~~~~~~~~~~ 115 (115)
.....+.|+||+..|
T Consensus 41 ~~~~~lll~GppGtG 55 (276)
T d1fnna2 41 HHYPRATLLGRPGTG 55 (276)
T ss_dssp SSCCEEEEECCTTSS
T ss_pred CCCCceEEECCCCCC
Confidence 345678999999876
No 4
>d2f3la1 b.80.8.1 (A:7-138) Lumenal RFR-domain protein {Cyanothece sp. atcc 51142 [TaxId: 43989]}
Probab=6.28 E-value=2.6e+02 Score=15.93 Aligned_cols=80 Identities=10% Similarity=-0.022 Sum_probs=34.5
Q ss_pred cCCCCCCcccccCCCCcceecccCCccceecccCCCcceeecCCCCcceeeccCCCcceeccCCCCCCcccccCCCCCcc
Q psy5556 10 CNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLGLRNCNTGGLGLRNCNTGGLGLRN 89 (115)
Q Consensus 10 c~t~g~~lr~cttsG~~Lr~C~tsG~~Lr~C~tsG~~Lr~C~gsG~~Lr~Ct~sG~~Lr~Cttsg~~lr~ctt~g~~lr~ 89 (115)
|+=.+-.++.+.=.+--+..|.-++--+..|.-.+--+..|.-.+..+.-+.-++-.+..+.-.+-.++.+.-.+--|..
T Consensus 6 ~~L~~~dfs~~~l~~a~f~~~~L~~~~f~~a~l~ga~f~~~~l~~~~~~~a~l~~a~~~~~~~~~~~~~~a~~~~a~l~~ 85 (132)
T d2f3la1 6 VKLIGEDFSGKSLTYAQFTNADLTDSNFSEADLRGAVFNGSALIGADLHGADLTNGLAYLTSFKGADLTNAVLTEAIMMR 85 (132)
T ss_dssp CBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEESCBCTTCBCTTCBCTTCEEEEEECTTCBCTTCBCTTCEEEE
T ss_pred CCccCCcCCCCcCCCCcccCCCCccccccccccceeeecccccccccccccccccccccccccchhhhccCCcCCCCcCC
Confidence 33333334444444444444444444444444444444444444444444444444444444444444444444333333
No 5
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=5.97 E-value=1.1e+02 Score=19.81 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=9.2
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.+++.||+.||
T Consensus 29 i~~l~G~NGsG 39 (200)
T d1sgwa_ 29 VVNFHGPNGIG 39 (200)
T ss_dssp CEEEECCTTSS
T ss_pred EEEEECCCCCh
Confidence 57889999887
No 6
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=5.73 E-value=1.2e+02 Score=20.51 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=10.8
Q ss_pred cceeeeecCCCCC
Q psy5556 103 RGLVAFTGPTQAG 115 (115)
Q Consensus 103 ~g~~~~~~~~~~~ 115 (115)
.+.+.|.|||..|
T Consensus 49 ~~~iLl~GPpG~G 61 (309)
T d1ofha_ 49 PKNILMIGPTGVG 61 (309)
T ss_dssp CCCEEEECCTTSS
T ss_pred CceEEEECCCCCC
Confidence 4678899999876
No 7
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=5.17 E-value=1.2e+02 Score=20.29 Aligned_cols=11 Identities=45% Similarity=1.141 Sum_probs=9.3
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.||+.||+.||
T Consensus 30 ~vaivG~sGsG 40 (242)
T d1mv5a_ 30 IIAFAGPSGGG 40 (242)
T ss_dssp EEEEECCTTSS
T ss_pred EEEEECCCCCC
Confidence 57899999887
No 8
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=5.15 E-value=1.3e+02 Score=20.37 Aligned_cols=11 Identities=18% Similarity=0.616 Sum_probs=9.3
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.||+.||+.||
T Consensus 31 ~vaIvG~sGsG 41 (241)
T d2pmka1 31 VIGIVGRSGSG 41 (241)
T ss_dssp EEEEECSTTSS
T ss_pred EEEEECCCCCC
Confidence 58899999887
No 9
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=5.15 E-value=1.3e+02 Score=20.22 Aligned_cols=11 Identities=36% Similarity=0.715 Sum_probs=9.4
Q ss_pred eeeeecCCCCC
Q psy5556 105 LVAFTGPTQAG 115 (115)
Q Consensus 105 ~~~~~~~~~~~ 115 (115)
.+++.||+.||
T Consensus 34 i~~liGpnGaG 44 (240)
T d1ji0a_ 34 IVTLIGANGAG 44 (240)
T ss_dssp EEEEECSTTSS
T ss_pred EEEEECCCCCc
Confidence 57899999987
No 10
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=5.05 E-value=1.2e+02 Score=21.38 Aligned_cols=10 Identities=40% Similarity=0.657 Sum_probs=0.0
Q ss_pred eeeecCCCCC
Q psy5556 106 VAFTGPTQAG 115 (115)
Q Consensus 106 ~~~~~~~~~~ 115 (115)
|++|||+.||
T Consensus 57 IgitG~pGaG 66 (327)
T d2p67a1 57 LGVTGTPGAG 66 (327)
T ss_dssp EEEEECTTSC
T ss_pred EEeeCCCCCC
Done!