RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5556
         (115 letters)



>gnl|CDD|224276 COG1357, COG1357, Pentapeptide repeats containing protein [Function
           unknown].
          Length = 238

 Score = 29.1 bits (65), Expect = 0.38
 Identities = 24/78 (30%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 27  LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLGLRNCNTGGLGLRNCNTGGLG 86
           L N N  G  L   N  G  L N N  G  L   +     L   +  G  L   +  G  
Sbjct: 125 LSNANLTGANLSGANLNGANLSNANLSGADLSGAD-----LSGADLSGANLSGADLRGAN 179

Query: 87  LRNCNTGGLGLRNCNTRG 104
           L   N  G  LRN N  G
Sbjct: 180 LSGANLSGADLRNANLSG 197



 Score = 29.1 bits (65), Expect = 0.46
 Identities = 26/98 (26%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 7   LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
           L   N  G  L N N  G  L   +     L   +  G  L   +  G  L   N  G  
Sbjct: 135 LSGANLNGANLSNANLSGADLSGAD-----LSGADLSGANLSGADLRGANLSGANLSGAD 189

Query: 67  LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
           LRN N     L   +  G  L   N     L   N  G
Sbjct: 190 LRNAN-----LSGADLSGADLTGANLVNANLGGANLFG 222



 Score = 27.9 bits (62), Expect = 1.2
 Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 17  LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLGLRNCNTGGLG 76
           L N N  G  L   N  G  L N N  G  L   +     L   +  G  L   +  G  
Sbjct: 125 LSNANLTGANLSGANLNGANLSNANLSGADLSGAD-----LSGADLSGANLSGADLRGAN 179

Query: 77  LRNCNTGGLGLRNCNTGGLGLRN 99
           L   N  G  LRN N  G  L  
Sbjct: 180 LSGANLSGADLRNANLSGADLSG 202



 Score = 26.0 bits (57), Expect = 4.7
 Identities = 35/111 (31%), Positives = 36/111 (32%), Gaps = 9/111 (8%)

Query: 3   GGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLR-NCNTGGLGLRNCNTGGLGLRSCN 61
           G L   N N  GL L   N  G  L N N  G  L    +  G  L   N  G  L   N
Sbjct: 42  GDLNFENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGADLEGANLRGANLSGAN 101

Query: 62  TGGLGLRNCNTGGLG--------LRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
             G  L N     L         L N N  G  L   N  G  L N N  G
Sbjct: 102 LSGANLSNATRANLSGADLSGANLSNANLTGANLSGANLNGANLSNANLSG 152



 Score = 25.2 bits (55), Expect = 8.1
 Identities = 25/85 (29%), Positives = 26/85 (30%), Gaps = 1/85 (1%)

Query: 8   RNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRS-CNTGGLG 66
            N     L       G L   N N  GL L   N  G  L N N  G  L    +  G  
Sbjct: 27  ANLLGADLQGSELQLGDLNFENANLSGLDLSGANLSGADLSNANLRGADLSKGADLSGAD 86

Query: 67  LRNCNTGGLGLRNCNTGGLGLRNCN 91
           L   N  G  L   N  G  L N  
Sbjct: 87  LEGANLRGANLSGANLSGANLSNAT 111


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.145    0.482 

Gapped
Lambda     K      H
   0.267   0.0731    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,636,152
Number of extensions: 479425
Number of successful extensions: 233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 206
Number of HSP's successfully gapped: 36
Length of query: 115
Length of database: 10,937,602
Length adjustment: 79
Effective length of query: 36
Effective length of database: 7,433,636
Effective search space: 267610896
Effective search space used: 267610896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)