RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5556
(115 letters)
>2w7z_A EFSQNR, pentapeptide repeat family protein; glutaraldehyde, gyrase
inhibitor, cyclic pentylation, chemic modification; HET:
LP6; 1.60A {Enterococcus faecalis}
Length = 214
Score = 40.6 bits (95), Expect = 2e-05
Identities = 14/98 (14%), Positives = 19/98 (19%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
CN G + +C R N + L
Sbjct: 97 FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESEFFEVTWXXLL 156
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
L C+ N + GL L G
Sbjct: 157 LEACDLTESNWLNTSLXGLDFSQNTFERLTFSPNYLSG 194
Score = 36.0 bits (83), Expect = 9e-04
Identities = 13/99 (13%), Positives = 21/99 (21%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
+ + + CN G + +C R N +
Sbjct: 87 WLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVHFNQTRLVESE 146
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRGL 105
L L C+ N + GL L
Sbjct: 147 FFEVTWXXLLLEACDLTESNWLNTSLXGLDFSQNTFERL 185
Score = 34.9 bits (80), Expect = 0.002
Identities = 12/98 (12%), Positives = 22/98 (22%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
C+ + + + + CN G + +C R N +
Sbjct: 77 FEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNLVH 136
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
L L C+ N + G
Sbjct: 137 FNQTRLVESEFFEVTWXXLLLEACDLTESNWLNTSLXG 174
Score = 34.5 bits (79), Expect = 0.003
Identities = 10/98 (10%), Positives = 21/98 (21%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
+ + + C+ + + + + CN G + C
Sbjct: 67 FASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCLFEDCXADYAS 126
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
R N + L L C+
Sbjct: 127 FRFANFNLVHFNQTRLVESEFFEVTWXXLLLEACDLTE 164
Score = 32.9 bits (75), Expect = 0.010
Identities = 7/95 (7%), Positives = 19/95 (20%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
+ + + + + C+ + + + + CN G
Sbjct: 57 FDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVTFLRCNLTGTNFADSYLXDCL 116
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN 101
+C R N +
Sbjct: 117 FEDCXADYASFRFANFNLVHFNQTRLVESEFFEVT 151
Score = 30.6 bits (69), Expect = 0.069
Identities = 10/98 (10%), Positives = 24/98 (24%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
+ + +RN + + + + + C+ + S + +
Sbjct: 37 YQQIDLPNQEVRNLVFRDAVFDHLSLANGQFASFDCSNVRFEACDFSNVEWLSGSFHRVT 96
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
CN G + +C R N
Sbjct: 97 FLRCNLTGTNFADSYLXDCLFEDCXADYASFRFANFNL 134
Score = 26.8 bits (59), Expect = 1.7
Identities = 11/85 (12%), Positives = 23/85 (27%), Gaps = 5/85 (5%)
Query: 17 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLGLRNCNTGGLG 76
L N + L N L R+ + + S + + C+ +
Sbjct: 32 LENHLYQQIDLPNQEVRNLVFRDAV-----FDHLSLANGQFASFDCSNVRFEACDFSNVE 86
Query: 77 LRNCNTGGLGLRNCNTGGLGLRNCN 101
+ + + CN G +
Sbjct: 87 WLSGSFHRVTFLRCNLTGTNFADSY 111
>3pss_A QNR; pentapeptide repeat, antibiotic resistance, DNA topoisomeras
cell cycle; HET: MLY; 2.00A {Aeromonas hydrophila} PDB:
3psz_A
Length = 216
Score = 30.9 bits (70), Expect = 0.050
Identities = 17/98 (17%), Positives = 24/98 (24%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
GL LR+C G+ + L N C
Sbjct: 78 CSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYANFEGCLLEQCE 137
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
L G L + G L G + + N +G
Sbjct: 138 LSGNRWQGANLFGASLAGSDLSGSEFGQIDWASVNLQG 175
Score = 29.7 bits (67), Expect = 0.15
Identities = 15/98 (15%), Positives = 20/98 (20%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
C+ GL LR+C G+ + L N
Sbjct: 68 FLRCDLTMADCSRSQCLGLELRDCQALGINFSRASFANQITVXSYFCEAHLTGNNFSYAN 127
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
C L G L + G L
Sbjct: 128 FEGCLLEQCELSGNRWQGANLFGASLAGSDLSGSEFGQ 165
>2qyu_A Secreted effector protein; ubiquitin E3 ligase, ligase; HET: B3P;
2.10A {Salmonella typhimurium} PDB: 3sy2_A 2qza_A
Length = 627
Score = 30.1 bits (67), Expect = 0.16
Identities = 12/102 (11%), Positives = 21/102 (20%), Gaps = 6/102 (5%)
Query: 4 GLGLRNCNTGGLGLRNCNTGGLGLRNCN-TGGLGLRNCNTGGLGLRNCNTGGLGLRSCNT 62
LR L + + RN + L G ++ N +
Sbjct: 24 DAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMERDGDIIKGFNFSNSKFTYSDI 83
Query: 63 GGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
L C L + N + +
Sbjct: 84 SHLHFDECRFTYSTLSDVV-----CSNTKFSNSDMNEVFLQY 120
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase,
hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex
aeolicus} PDB: 2eww_A* 2gsz_A*
Length = 372
Score = 26.0 bits (58), Expect = 3.0
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 103 RGLVAFTGPTQAG 115
GL+ TGPT +G
Sbjct: 136 MGLILVTGPTGSG 148
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal
domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Length = 261
Score = 26.0 bits (58), Expect = 3.3
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 103 RGLVAFTGPTQAG 115
GL+ TGPT +G
Sbjct: 25 MGLILVTGPTGSG 37
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion
ATPase, ATP-binding, FIMB nucleotide-binding, transport;
HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB:
3jvu_A*
Length = 356
Score = 26.0 bits (58), Expect = 3.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 103 RGLVAFTGPTQAG 115
RGLV TGPT +G
Sbjct: 123 RGLVLVTGPTGSG 135
>2xt2_A ALBG, MCBG-like protein; cell cycle, right handed quadrilateral
beta helix; 2.00A {Xanthomonas albilineans} PDB: 2xt4_A
Length = 200
Score = 24.8 bits (55), Expect = 6.4
Identities = 10/98 (10%), Positives = 23/98 (23%), Gaps = 5/98 (5%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSCNTGGLG 66
+ + + + +C R CN L C
Sbjct: 1 MPAKTLESKDYCGESFVSEDRSGQSLESIRFEDCT-----FRQCNFTEAELNRCKFRECE 55
Query: 67 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
+CN + + + + +C G+ +
Sbjct: 56 FVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQWPS 93
Score = 24.8 bits (55), Expect = 6.8
Identities = 10/99 (10%), Positives = 24/99 (24%), Gaps = 6/99 (6%)
Query: 7 LRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCN-TGGLGLRSCNTGGL 65
+CN + + + + +C G+ + + G L C
Sbjct: 56 FVDCNLSLISIPQTSFMEVRFVDCKMLGVNWTSAQ-----WPSVKMEGALSFERCILNDS 110
Query: 66 GLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRG 104
G+ + C + + +G
Sbjct: 111 LFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSDLKG 149
Score = 24.8 bits (55), Expect = 7.8
Identities = 9/110 (8%), Positives = 21/110 (19%), Gaps = 10/110 (9%)
Query: 1 MSGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRSC 60
M G L C G+ + C + + L+
Sbjct: 96 MEGALSFERCILNDSLFYGLYLAGVKMVECRIHDANFTEADCEDADFTQSD-----LKGS 150
Query: 61 NTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTGGLGLRNCNTRGLVAFTG 110
L + + + + + + L+
Sbjct: 151 TFHNTKLTGAS-----FIDAVNYHIDIFHNDIKRARFSLPEAASLLNSLD 195
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.145 0.482
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,797,567
Number of extensions: 104189
Number of successful extensions: 221
Number of sequences better than 10.0: 1
Number of HSP's gapped: 155
Number of HSP's successfully gapped: 31
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.6 bits)