BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5557
(213 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2
SV=1
Length = 133
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 51/52 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE+
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEI 77
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 107 bits (268), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 51/52 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE+
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEI 77
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 107 bits (268), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 42/52 (80%), Positives = 51/52 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE+
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEI 77
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 83.6 bits (205), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 43/50 (86%)
Query: 129 LIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
LIG LRS DQFANL+L TIERI+V + YGDI RG++I+RGENVVL+GE+
Sbjct: 34 LIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGEL 83
>sp|B2ZX90|FAS1_ORYSJ Chromatin assembly factor 1 subunit FSM OS=Oryza sativa subsp.
japonica GN=FSM PE=2 SV=1
Length = 940
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 70/101 (69%), Gaps = 11/101 (10%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
++++KK++EE ++QK++E KEE + KK+++K+E+E +KE+K+ EK EE +
Sbjct: 356 RKQQKKQQEEALREQKRRE------KEEAEMKKQQRKQEEEAQKEQKRREK-----EEAE 404
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
+K++KKQ+++ EK+QK++E++ + KK+ K+A R
Sbjct: 405 TRKQQKKQQEEAEKEQKRREKEAVQLKKQLAIQKQASMMER 445
Score = 31.2 bits (69), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 58/72 (80%), Gaps = 3/72 (4%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKE---EKKEKKKEEKKQK 70
R+ K++KK++EE ++++++++E+ + KK+++KQ+++ +KE+K E+ E +K++KKQ+
Sbjct: 354 RMRKQQKKQQEEALREQKRREKEEAEMKKQQRKQEEEAQKEQKRREKEEAETRKQQKKQQ 413
Query: 71 KEEEKDKKKEEK 82
+E EK++K+ EK
Sbjct: 414 EEAEKEQKRREK 425
>sp|A2R7P5|NST1_ASPNC Stress response protein nst1 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=nst1 PE=3 SV=1
Length = 1201
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 58/74 (78%)
Query: 35 EEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKK 94
EE+++K++E+KK+++ E+K ++ E+ K+ E++K+ +EE + + + E+KQ++++E ++K+
Sbjct: 592 EEQRRKREEQKKKREAERKAQEAERLRKEAEKQKRLREERERQAEIERKQREQKELEKKR 651
Query: 95 KEEKKQKKKKEEKK 108
+EE +Q + +E+K
Sbjct: 652 REEARQNELREKKT 665
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 30.4 bits (67), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 76/100 (76%), Gaps = 8/100 (8%)
Query: 17 KRKKKKKEEENKKKQK---KKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
K+++ +KEEE K++++ +KEE +++++E+ QK++E K +++E+ E++K+E+ QK+EE
Sbjct: 2765 KQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEE 2824
Query: 74 EKDK-----KKEEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
K + +KEE +++++E+ QK++E K+Q++++ E+K
Sbjct: 2825 LKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERK 2864
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.301 0.124 0.316
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,162,390
Number of Sequences: 539616
Number of extensions: 5319910
Number of successful extensions: 806510
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11164
Number of HSP's successfully gapped in prelim test: 2115
Number of HSP's that attempted gapping in prelim test: 145077
Number of HSP's gapped (non-prelim): 259732
length of query: 213
length of database: 191,569,459
effective HSP length: 113
effective length of query: 100
effective length of database: 130,592,851
effective search space: 13059285100
effective search space used: 13059285100
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 59 (27.3 bits)