Query psy5557
Match_columns 213
No_of_seqs 120 out of 1171
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 20:34:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5557.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5557hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.9 3.9E-23 1.3E-27 162.1 8.6 83 101-183 18-104 (113)
2 3bw1_A SMX4 protein, U6 snRNA- 99.9 5.1E-23 1.7E-27 156.3 8.8 82 105-186 9-94 (96)
3 1h64_1 SnRNP SM-like protein; 99.9 1.5E-21 5E-26 141.0 9.0 71 107-180 5-75 (75)
4 3s6n_G Small nuclear ribonucle 99.9 9.4E-22 3.2E-26 143.2 7.9 71 107-180 5-75 (76)
5 1i4k_A Putative snRNP SM-like 99.8 3.6E-21 1.2E-25 139.3 8.9 71 107-180 5-75 (77)
6 1th7_A SnRNP-2, small nuclear 99.8 5.5E-21 1.9E-25 140.2 9.8 72 106-180 9-80 (81)
7 4emk_B U6 snRNA-associated SM- 99.8 2E-21 6.9E-26 140.9 7.4 71 106-179 4-74 (75)
8 1ljo_A Archaeal SM-like protei 99.8 4.4E-21 1.5E-25 139.3 8.9 71 107-180 6-77 (77)
9 4emk_A U6 snRNA-associated SM- 99.8 8E-21 2.7E-25 145.0 10.1 73 105-179 19-91 (94)
10 1d3b_B Protein (small nuclear 99.8 4.4E-21 1.5E-25 143.0 8.1 74 108-181 6-86 (91)
11 1i8f_A Putative snRNP SM-like 99.8 9E-21 3.1E-25 139.3 9.5 71 105-179 10-80 (81)
12 4emh_A Probable U6 snRNA-assoc 99.8 5.3E-21 1.8E-25 148.5 8.2 80 107-188 17-96 (105)
13 3s6n_F Small nuclear ribonucle 99.8 9.7E-21 3.3E-25 141.4 9.0 73 107-182 7-79 (86)
14 3pgw_B SM B; protein-RNA compl 99.8 2E-20 7E-25 163.0 11.1 72 108-179 6-84 (231)
15 1b34_A Protein (small nuclear 99.8 2.1E-20 7.2E-25 147.1 8.8 72 107-181 3-74 (119)
16 2fwk_A U6 snRNA-associated SM- 99.8 1.4E-20 4.6E-25 148.4 7.5 77 106-182 28-116 (121)
17 3s6n_E Small nuclear ribonucle 99.8 1.5E-20 5.1E-25 142.7 7.3 74 104-179 14-91 (92)
18 4emg_A Probable U6 snRNA-assoc 99.8 3.1E-20 1.1E-24 140.6 8.8 73 106-178 9-91 (93)
19 1mgq_A SM-like protein; LSM, R 99.8 2.7E-20 9.4E-25 137.4 8.1 70 105-177 14-83 (83)
20 1d3b_A Protein (small nuclear 99.8 1.3E-19 4.5E-24 131.9 9.6 70 107-179 6-75 (75)
21 1n9r_A SMF, small nuclear ribo 99.8 5.8E-20 2E-24 139.4 7.6 71 106-179 21-92 (93)
22 1b34_B Protein (small nuclear 99.8 1.4E-19 4.8E-24 141.8 9.2 76 105-180 26-114 (118)
23 2y9a_D Small nuclear ribonucle 99.8 1.2E-18 4.1E-23 139.2 8.6 78 107-187 6-83 (126)
24 1m5q_A SMAP3, small nuclear ri 99.7 2E-18 7E-23 138.5 7.4 72 109-187 3-74 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.9 9.3E-09 3.2E-13 77.9 8.9 66 109-183 10-76 (86)
26 1y96_B Gemin7, SIP3, GEM-assoc 96.3 0.022 7.5E-07 43.1 8.2 63 106-176 19-82 (85)
27 1kq1_A HFQ, HOST factor for Q 96.1 0.03 1E-06 41.3 7.9 57 108-179 9-67 (77)
28 3ahu_A Protein HFQ; SM-like mo 95.9 0.015 5.2E-07 43.1 5.6 38 109-146 14-53 (78)
29 2vxe_A CG10686-PA; EDC3, CAR-1 95.7 0.064 2.2E-06 40.7 8.4 68 113-180 10-84 (88)
30 2qtx_A Uncharacterized protein 95.5 0.019 6.5E-07 42.0 4.9 32 115-146 24-55 (71)
31 2y90_A Protein HFQ; RNA-bindin 95.5 0.046 1.6E-06 42.6 7.3 55 109-179 12-68 (104)
32 2ylb_A Protein HFQ; RNA-bindin 95.4 0.028 9.7E-07 41.1 5.6 55 109-179 12-68 (74)
33 1u1s_A HFQ protein; SM-like ba 95.4 0.028 9.5E-07 42.2 5.6 35 110-144 11-47 (82)
34 2fb7_A SM-like protein, LSM-14 95.1 0.06 2E-06 41.4 6.7 72 108-179 11-89 (95)
35 4a53_A EDC3; RNA binding prote 94.7 0.26 8.8E-06 39.6 9.7 58 111-182 7-66 (125)
36 1ycy_A Conserved hypothetical 94.3 0.11 3.9E-06 37.8 6.2 61 109-177 9-69 (71)
37 3sb2_A Protein HFQ; SM-like, R 94.2 0.051 1.8E-06 40.4 4.3 55 109-179 11-67 (79)
38 2vc8_A Enhancer of mRNA-decapp 94.2 0.15 5.1E-06 38.4 6.8 64 112-181 5-70 (84)
39 3hfn_A ASL2047 protein; HFQ, S 91.4 1.4 4.9E-05 32.0 8.6 58 107-178 12-71 (72)
40 3hfo_A SSR3341 protein; HFQ, S 91.2 1.4 4.6E-05 32.0 8.2 57 107-177 10-68 (70)
41 3rux_A BIRA bifunctional prote 90.0 0.35 1.2E-05 41.8 4.9 36 112-147 220-255 (270)
42 2eay_A Biotin [acetyl-COA-carb 88.8 0.31 1.1E-05 41.0 3.7 52 109-169 181-232 (233)
43 1bia_A BIRA bifunctional prote 88.2 0.83 2.8E-05 39.9 6.1 53 109-169 266-318 (321)
44 2dxu_A Biotin--[acetyl-COA-car 85.9 0.57 2E-05 39.5 3.6 31 115-147 188-218 (235)
45 2ej9_A Putative biotin ligase; 85.5 1.2 4.2E-05 37.4 5.5 34 112-146 188-221 (237)
46 1ib8_A Conserved protein SP14. 85.5 1.1 3.9E-05 36.3 5.0 35 109-144 97-135 (164)
47 2rm4_A CG6311-PB, DM EDC3; enh 76.5 24 0.00083 27.3 10.6 66 112-182 8-74 (103)
48 3rkx_A Biotin-[acetyl-COA-carb 74.1 3.2 0.00011 36.6 4.4 37 110-147 273-309 (323)
49 3bfm_A Biotin protein ligase-l 73.0 4.1 0.00014 33.9 4.7 34 109-147 187-220 (235)
50 2xk0_A Polycomb protein PCL; t 53.3 24 0.00081 25.6 4.9 24 114-137 17-40 (69)
51 4a8c_A Periplasmic PH-dependen 53.0 29 0.00098 31.3 6.6 31 117-147 88-118 (436)
52 3fb9_A Uncharacterized protein 46.7 36 0.0012 25.6 5.2 40 103-144 12-55 (90)
53 4hcz_A PHD finger protein 1; p 46.3 25 0.00086 24.7 4.0 26 115-140 6-31 (58)
54 1ky9_A Protease DO, DEGP, HTRA 43.4 26 0.00089 31.9 4.8 31 117-147 111-141 (448)
55 2e12_A SM-like motif, hypothet 41.7 20 0.00069 27.5 3.2 61 116-181 28-95 (101)
56 1x4r_A PARP14 protein; WWE dom 41.3 2.2 7.5E-05 32.8 -2.3 19 130-148 34-52 (99)
57 3stj_A Protease DEGQ; serine p 36.1 38 0.0013 29.6 4.5 31 117-147 88-118 (345)
58 1te0_A Protease DEGS; two doma 32.7 48 0.0016 28.2 4.5 31 117-147 66-96 (318)
59 3pv2_A DEGQ; trypsin fold, PDZ 32.6 36 0.0012 30.9 3.9 31 117-147 102-132 (451)
60 3sti_A Protease DEGQ; serine p 32.1 46 0.0016 27.8 4.2 31 117-147 88-118 (245)
61 1y8t_A Hypothetical protein RV 31.2 46 0.0016 28.3 4.1 32 116-147 63-94 (324)
62 3lgi_A Protease DEGS; stress-s 31.0 57 0.0019 26.4 4.5 31 117-147 77-107 (237)
63 3tjo_A Serine protease HTRA1; 30.2 60 0.002 26.4 4.5 31 117-147 87-117 (231)
64 4fln_A Protease DO-like 2, chl 29.7 63 0.0021 30.7 5.1 30 117-146 97-127 (539)
65 2qs8_A XAA-Pro dipeptidase; am 29.2 55 0.0019 27.7 4.3 42 134-177 1-42 (418)
66 1lcy_A HTRA2 serine protease; 28.9 60 0.002 27.8 4.5 31 117-147 71-101 (325)
67 2eqj_A Metal-response element- 28.0 73 0.0025 22.8 4.0 25 115-139 16-40 (66)
68 3gr5_A ESCC; secretin, type II 26.9 44 0.0015 26.4 3.0 65 105-184 26-92 (156)
69 2qqr_A JMJC domain-containing 26.1 69 0.0024 25.0 4.0 24 114-137 7-30 (118)
70 2wr8_A Putative uncharacterize 26.1 41 0.0014 29.3 2.9 21 126-146 171-191 (259)
71 1njh_A Protein YOJF; structura 25.9 1.6E+02 0.0053 23.3 5.9 22 106-127 11-34 (119)
72 2zbv_A Uncharacterized conserv 24.1 50 0.0017 28.7 3.1 21 126-146 167-187 (263)
73 3qo6_A Protease DO-like 1, chl 23.3 77 0.0026 27.4 4.2 31 117-147 77-107 (348)
74 3num_A Serine protease HTRA1; 21.6 1.1E+02 0.0037 26.1 4.8 31 117-147 70-100 (332)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.88 E-value=3.9e-23 Score=162.09 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=57.5
Q ss_pred hhhhHHHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCC----ccceeccceeeeecCcEEEEE
Q psy5557 101 KKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGN----QYGDIPRGIFIIRGENVVLMG 176 (213)
Q Consensus 101 ~~~keE~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n----~~~er~LGlVlIRGnnIV~I~ 176 (213)
.+.+.+.+..|..|+|++|+|.|+|||.|.|+|+|||+||||||+||+|++..++ ....+++|++||||+||++|+
T Consensus 18 ~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~ 97 (113)
T 4emk_C 18 ERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIA 97 (113)
T ss_dssp --------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEE
T ss_pred cCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEE
Confidence 3556789999999999999999999999999999999999999999999986432 134678999999999999999
Q ss_pred eeccccc
Q psy5557 177 EVVTVVN 183 (213)
Q Consensus 177 ~iD~~~d 183 (213)
++|....
T Consensus 98 ~~d~~ee 104 (113)
T 4emk_C 98 PMDGSEE 104 (113)
T ss_dssp ECC----
T ss_pred ecCcccc
Confidence 9986644
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.88 E-value=5.1e-23 Score=156.35 Aligned_cols=82 Identities=23% Similarity=0.257 Sum_probs=68.6
Q ss_pred HHHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCC----ccceeccceeeeecCcEEEEEeecc
Q psy5557 105 EEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGN----QYGDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 105 eE~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n----~~~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
+++...|..++|++|+|.|+|||.|.|+|.|||+||||||+||.|++.... ....+++|.+||||+||++|+++|.
T Consensus 9 ~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~ 88 (96)
T 3bw1_A 9 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSE 88 (96)
T ss_dssp CCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC-
T ss_pred hhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCc
Confidence 578899999999999999999999999999999999999999999986432 1235789999999999999999988
Q ss_pred cccccc
Q psy5557 181 VVNVKV 186 (213)
Q Consensus 181 ~~d~s~ 186 (213)
..|.++
T Consensus 89 ~~d~~~ 94 (96)
T 3bw1_A 89 DDDGAV 94 (96)
T ss_dssp ----CC
T ss_pred cccccc
Confidence 877654
No 3
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.86 E-value=1.5e-21 Score=141.00 Aligned_cols=71 Identities=17% Similarity=0.095 Sum_probs=63.4
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
+...|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++.. ...+.+|.++|||+||++|+++|+
T Consensus 5 P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---EVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp HHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEEC--
T ss_pred HHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC---CceeECCEEEECCCEEEEEEeCCC
Confidence 67899999999999999999999999999999999999999998743 236789999999999999998763
No 4
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.85 E-value=9.4e-22 Score=143.18 Aligned_cols=71 Identities=24% Similarity=0.428 Sum_probs=53.1
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
...+|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++..+. .+.+|.++|||+||++|+++|.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~---~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQ---QNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-------CBSSEEECSSSEEEEEC---
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCc---EeEcCEEEECCCeEEEEEeccC
Confidence 3578999999999999999999999999999999999999999875432 5689999999999999999874
No 5
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.85 E-value=3.6e-21 Score=139.35 Aligned_cols=71 Identities=21% Similarity=0.143 Sum_probs=64.1
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
+...|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++... ..+.+|.++|||+||++|+++|.
T Consensus 5 P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~d~ 75 (77)
T 1i4k_A 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE---VVRKVGSVVIRGDTVVFVSPAPG 75 (77)
T ss_dssp HHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE---EEEEEEEEEECGGGEEEEEECC-
T ss_pred HHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCC---cEeECCEEEECCCEEEEEEeCCC
Confidence 578999999999999999999999999999999999999999987432 35689999999999999998774
No 6
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.84 E-value=5.5e-21 Score=140.20 Aligned_cols=72 Identities=32% Similarity=0.378 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecc
Q psy5557 106 EKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 106 E~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
-+...|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++... ..+.+|.++|||+||++|+++|.
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDG---SGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSS---CEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCC---ceeECCEEEECCCEEEEEEecCC
Confidence 4678999999999999999999999999999999999999999987532 35789999999999999998773
No 7
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.84 E-value=2e-21 Score=140.91 Aligned_cols=71 Identities=21% Similarity=0.257 Sum_probs=63.5
Q ss_pred HHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 106 EKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 106 E~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
.+...|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++. +. ..+.+|.++|||+||++|+++|
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-GK--KTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-TE--EEEEEEEEEEEGGGSSEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-CC--cccEecEEEEcCCeEEEEEecC
Confidence 46789999999999999999999999999999999999999999863 22 2567999999999999999876
No 8
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.84 E-value=4.4e-21 Score=139.29 Aligned_cols=71 Identities=23% Similarity=0.280 Sum_probs=63.2
Q ss_pred HHHHHHhhcCCeEEEEecCC-eEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQK-RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDG-R~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
+...|..++|++|+|.|+|| +.|.|+|.|||+||||+|+||.|++. +. ..+.+|.++|||+||++|+++|.
T Consensus 6 P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 6 PNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG-EE--KVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp HHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec-CC--cEeECCeEEEeCCeEEEEEeCCC
Confidence 57899999999999999999 99999999999999999999999874 22 25689999999999999998873
No 9
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.84 E-value=8e-21 Score=145.02 Aligned_cols=73 Identities=14% Similarity=0.103 Sum_probs=64.5
Q ss_pred HHHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 105 EEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 105 eE~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
..++..|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++..+. ..+.+|.+||||+||++|.+..
T Consensus 19 ~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 19 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTG--VTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp -CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTC--CEEEEEEEEECSTTEEEEEECC
T ss_pred ccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCC--cEeEcCEEEEcCCEEEEEEeCC
Confidence 346789999999999999999999999999999999999999999973332 2678999999999999999764
No 10
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.84 E-value=4.4e-21 Score=142.95 Aligned_cols=74 Identities=22% Similarity=0.265 Sum_probs=63.4
Q ss_pred HHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeec--C-----CccceeccceeeeecCcEEEEEeecc
Q psy5557 108 KNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHV--G-----NQYGDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 108 ~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~--~-----n~~~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
..+|..++|++|+|.|+||+.|.|+|+|||+||||||+||.|++.. . .....+.+|.+||||+||++|.+.+.
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 3578999999999999999999999999999999999999997521 1 12346789999999999999998774
Q ss_pred c
Q psy5557 181 V 181 (213)
Q Consensus 181 ~ 181 (213)
.
T Consensus 86 ~ 86 (91)
T 1d3b_B 86 P 86 (91)
T ss_dssp C
T ss_pred C
Confidence 4
No 11
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.84 E-value=9e-21 Score=139.27 Aligned_cols=71 Identities=27% Similarity=0.356 Sum_probs=64.3
Q ss_pred HHHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 105 EEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 105 eE~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
..+...|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|+ . +. ..+++|.++|||+||++|+++|
T Consensus 10 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-~~--~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 10 ATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I-DG--NVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E-TT--EEEEEEEEEECGGGEEEEEECC
T ss_pred cchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c-CC--cccCCCEEEECCCEEEEEEeCC
Confidence 3578899999999999999999999999999999999999999998 3 32 3678999999999999999876
No 12
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.83 E-value=5.3e-21 Score=148.54 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=54.7
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecccccccc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVVNVKV 186 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~d~s~ 186 (213)
+..+|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|...++.. .+.+|.+||||+||+||.++|..+++++
T Consensus 17 p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~--~~~lg~v~IRG~nI~~I~~pd~l~d~p~ 94 (105)
T 4emh_A 17 PLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDK--FFRLPECYIRGNNIKYLRIQDEVLSQVA 94 (105)
T ss_dssp ---------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCE--EEEEEEEEECGGGEEEEEC---------
T ss_pred HHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCce--eeEcCeEEEeCCeEEEEecCHHHhhhhh
Confidence 56789999999999999999999999999999999999999987544432 4678999999999999999999998887
Q ss_pred cc
Q psy5557 187 IK 188 (213)
Q Consensus 187 ~e 188 (213)
..
T Consensus 95 ~~ 96 (105)
T 4emh_A 95 KQ 96 (105)
T ss_dssp --
T ss_pred hh
Confidence 65
No 13
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.83 E-value=9.7e-21 Score=141.41 Aligned_cols=73 Identities=26% Similarity=0.195 Sum_probs=63.8
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecccc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVV 182 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~ 182 (213)
+..+|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|+.. +. ..+.+|.++|||+||++|+++|...
T Consensus 7 P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-g~--~~~~lg~v~IRG~nI~~i~~~d~~~ 79 (86)
T 3s6n_F 7 PKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-GA--LSGHLGEVLIRCNNVLYIRGVEEEE 79 (86)
T ss_dssp HHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEESSEEECGGGEEEEEECC---
T ss_pred cHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-Cc--eeeEccEEEEeCCeEEEEEeCCccc
Confidence 6789999999999999999999999999999999999999998753 22 2467999999999999999988664
No 14
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.83 E-value=2e-20 Score=162.96 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=63.2
Q ss_pred HHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeec-C------CccceeccceeeeecCcEEEEEeec
Q psy5557 108 KNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHV-G------NQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 108 ~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~-~------n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
..+|.+|||++|+|.|+|||.|+|+|+|||+||||||+||+|++.. . .....+++|+||||||||++|+..+
T Consensus 6 ~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~ 84 (231)
T 3pgw_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (231)
T ss_pred hHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecC
Confidence 4689999999999999999999999999999999999999998741 1 1234789999999999999999643
No 15
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.82 E-value=2.1e-20 Score=147.08 Aligned_cols=72 Identities=13% Similarity=0.044 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeeccc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTV 181 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~ 181 (213)
+..+|..++|++|+|.|+||+.|.|+|.|||+||||+|+||+|+.... ....+|.+||||+||+||.++|..
T Consensus 3 p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~---~~~~lg~v~IRG~nI~~I~~pd~l 74 (119)
T 1b34_A 3 LVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR---EPVQLETLSIRGNNIRYFILPDSL 74 (119)
T ss_dssp HHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTS---CCEEEEEEEECGGGEEEEECCTTC
T ss_pred hHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCC---ceeEcceEEEcCCeEEEEEecccc
Confidence 467899999999999999999999999999999999999999986432 246899999999999999998773
No 16
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.82 E-value=1.4e-20 Score=148.35 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=65.3
Q ss_pred HHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecC-------Cccc-----eeccceeeeecCcEE
Q psy5557 106 EKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVG-------NQYG-----DIPRGIFIIRGENVV 173 (213)
Q Consensus 106 E~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~-------n~~~-----er~LGlVlIRGnnIV 173 (213)
.++..|..++|++|+|.|+||+.|.|+|+|||+||||||+||.|++... .... .+.+|.+||||+||+
T Consensus 28 ~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv 107 (121)
T 2fwk_A 28 LPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVA 107 (121)
T ss_dssp CHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEE
T ss_pred CcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEE
Confidence 5788999999999999999999999999999999999999999988530 1112 568999999999999
Q ss_pred EEEeecccc
Q psy5557 174 LMGEVVTVV 182 (213)
Q Consensus 174 ~I~~iD~~~ 182 (213)
+|++.+...
T Consensus 108 ~I~~~~~~~ 116 (121)
T 2fwk_A 108 MLVPGGDPD 116 (121)
T ss_dssp EEESSSCC-
T ss_pred EEEecCCCC
Confidence 999877553
No 17
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.82 E-value=1.5e-20 Score=142.73 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=65.7
Q ss_pred hHHHHHHHHhhcCCeEEEEe----cCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 104 KEEKKNKKAEEQNRQQGLYP----NQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 104 keE~~~~L~~~LgKrV~V~L----kDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
--.+++.|..+++++|+|.+ +||+.|.|+|.|||+||||+|+||.|++..+. ..+.+|.+||||+||++|+++|
T Consensus 14 m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 14 MVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK--SRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSC--CEEEEEEEEECGGGEEEEEEC-
T ss_pred ccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCC--ceeEcCeEEEeCCEEEEEEeCC
Confidence 34588999999999999999 99999999999999999999999999975432 3678999999999999999876
No 18
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.82 E-value=3.1e-20 Score=140.60 Aligned_cols=73 Identities=19% Similarity=0.224 Sum_probs=62.7
Q ss_pred HHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeec----CC------ccceeccceeeeecCcEEEE
Q psy5557 106 EKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHV----GN------QYGDIPRGIFIIRGENVVLM 175 (213)
Q Consensus 106 E~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~----~n------~~~er~LGlVlIRGnnIV~I 175 (213)
.+...|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++.. +. ....+++|++||||+||++|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 456788888999999999999999999999999999999999999863 11 01367899999999999999
Q ss_pred Eee
Q psy5557 176 GEV 178 (213)
Q Consensus 176 ~~i 178 (213)
+++
T Consensus 89 ~p~ 91 (93)
T 4emg_A 89 APP 91 (93)
T ss_dssp ECC
T ss_pred Eec
Confidence 864
No 19
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.82 E-value=2.7e-20 Score=137.43 Aligned_cols=70 Identities=24% Similarity=0.263 Sum_probs=62.9
Q ss_pred HHHHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEe
Q psy5557 105 EEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177 (213)
Q Consensus 105 eE~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~ 177 (213)
..+...|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|++.. ...+.+|.++|||+||++|++
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG---EVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEC
T ss_pred cChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC---CcccCCCEEEECCCEEEEEEC
Confidence 4467899999999999999999999999999999999999999998743 236789999999999999974
No 20
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.80 E-value=1.3e-19 Score=131.93 Aligned_cols=70 Identities=13% Similarity=-0.001 Sum_probs=63.1
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
+...|..++|++|+|.|++|+.|.|+|.|||+||||+|+||.++..++ ....+|.++|||+||.||..+|
T Consensus 6 P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~---~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 6 PIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG---RVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp HHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS---CEEEEEEEEECGGGEEEEEECC
T ss_pred HHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCC---cEEEcCeEEEeCCEEEEEEcCC
Confidence 678999999999999999999999999999999999999999986333 2568999999999999998765
No 21
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.80 E-value=5.8e-20 Score=139.44 Aligned_cols=71 Identities=25% Similarity=0.251 Sum_probs=60.2
Q ss_pred HHHHHHHhhcCCeEEEEecCC-eEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 106 EKKNKKAEEQNRQQGLYPNQK-RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 106 E~~~~L~~~LgKrV~V~LkDG-R~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
-+..+|..++|++|+|.|+|| +.|.|+|.|||+||||+|+||.|++. +. ..+.+|.+||||+||++|.+++
T Consensus 21 ~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-~~--~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 21 NPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-GV--SHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp -----CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-TE--EEEECCSEEECGGGEEEEEECC
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-CC--eEeEcCEEEEcCCeEEEEEeCC
Confidence 467889999999999999999 99999999999999999999999863 22 2568999999999999999876
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.80 E-value=1.4e-19 Score=141.83 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=62.7
Q ss_pred HHHHHHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCc-----------cceeccceeeeecCc
Q psy5557 105 EEKKNKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQ-----------YGDIPRGIFIIRGEN 171 (213)
Q Consensus 105 eE~~~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~-----------~~er~LGlVlIRGnn 171 (213)
..+++.|..++ |++|+|.|+||+.|.|+|+|||+||||||+||.|++..... ...+++|.+||||+|
T Consensus 26 ~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~n 105 (118)
T 1b34_B 26 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 105 (118)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred cChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCE
Confidence 35788999999 59999999999999999999999999999999998743110 124579999999999
Q ss_pred EEEEEeecc
Q psy5557 172 VVLMGEVVT 180 (213)
Q Consensus 172 IV~I~~iD~ 180 (213)
|++|++.+.
T Consensus 106 Vv~I~~~~~ 114 (118)
T 1b34_B 106 VIVVLRNPL 114 (118)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCch
Confidence 999998764
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.76 E-value=1.2e-18 Score=139.17 Aligned_cols=78 Identities=13% Similarity=0.049 Sum_probs=68.1
Q ss_pred HHHHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecccccccc
Q psy5557 107 KKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVVNVKV 186 (213)
Q Consensus 107 ~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~d~s~ 186 (213)
+..+|..++|++|+|.|+||++|.|+|.|||+||||+|+||+++..++. ...+|.||||||||.||..+|...+.++
T Consensus 6 P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~---~~~l~~v~IRGnnI~~I~lpd~l~~~~~ 82 (126)
T 2y9a_D 6 PIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR---VAQLEQVYIRGSKIRFLILPDMLKNAPM 82 (126)
T ss_dssp SHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC---CEEEEEEEECGGGEEEEECCSSCSSSSH
T ss_pred HHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc---EeecccEEEeCCEEEEEEccccccchHH
Confidence 5689999999999999999999999999999999999999998753332 4678999999999999998887765554
Q ss_pred c
Q psy5557 187 I 187 (213)
Q Consensus 187 ~ 187 (213)
.
T Consensus 83 l 83 (126)
T 2y9a_D 83 L 83 (126)
T ss_dssp H
T ss_pred h
Confidence 4
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.74 E-value=2e-18 Score=138.48 Aligned_cols=72 Identities=15% Similarity=0.172 Sum_probs=64.3
Q ss_pred HHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeeccccccccc
Q psy5557 109 NKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVVNVKVI 187 (213)
Q Consensus 109 ~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~d~s~~ 187 (213)
..|..++|++|+|.|+||+.|.|+|.|||+||||+|+||.|+. + ..+|.++|||+||++|.++|..+|..+.
T Consensus 3 ~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~--~-----~~lg~v~IRG~nI~~I~~~d~~~d~~~f 74 (130)
T 1m5q_A 3 AELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA--G-----EKFNRVFIMYRYIVHIDSTERRIDMREF 74 (130)
T ss_dssp HHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT--C-----CEEEEEEECGGGEEEEEECCCCCCHHHH
T ss_pred hHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc--C-----CEeceEEEeCCeEEEEEcCCcccCHHHH
Confidence 5799999999999999999999999999999999999999862 2 3689999999999999999887665433
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.87 E-value=9.3e-09 Score=77.88 Aligned_cols=66 Identities=15% Similarity=0.098 Sum_probs=56.8
Q ss_pred HHHHhhcCCeEEEEecCCeEEEEEEEEec-CcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeeccccc
Q psy5557 109 NKKAEEQNRQQGLYPNQKRTLIGYLRSVD-QFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVVN 183 (213)
Q Consensus 109 ~~L~~~LgKrV~V~LkDGR~~~GtL~gFD-q~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~d 183 (213)
..|.+|+|+.|.|+|.||++|.|+|.+|| ...||+|.|| ..++. ...++|.|..|..|..+....+
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~----~~~~~-----~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF----LEDGS-----MSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE----CTTSC-----EEEEEECGGGEEEEEEEECCCH
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec----ccCCe-----EEEEEEecceEEEEEEecchhH
Confidence 47999999999999999999999999999 8999999998 12332 4789999999999998765543
No 26
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.25 E-value=0.022 Score=43.06 Aligned_cols=63 Identities=8% Similarity=0.017 Sum_probs=50.5
Q ss_pred HHHHHHHhhcCCeEEEEecCCeEEEEEEEEec-CcCceEecceEEEeecCCccceeccceeeeecCcEEEEE
Q psy5557 106 EKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVD-QFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMG 176 (213)
Q Consensus 106 E~~~~L~~~LgKrV~V~LkDGR~~~GtL~gFD-q~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~ 176 (213)
--+..|..+.|++|.+.|-++-.+.|++.++| ...|++.++-. .+ ...+...+||++.|++++
T Consensus 19 RfLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~----TP----iGv~~eAlLR~~Dii~~s 82 (85)
T 1y96_B 19 RYLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ----TP----IGVQAEALLRCSDIISYT 82 (85)
T ss_dssp HHHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC----CT----TCCEEEEEEEGGGEEEEE
T ss_pred HHHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC----CC----cccchhhhhhcCCEEEEE
Confidence 35667788889999999999999999999999 56688877641 12 113577999999999986
No 27
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.05 E-value=0.03 Score=41.27 Aligned_cols=57 Identities=5% Similarity=0.029 Sum_probs=41.7
Q ss_pred HHHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 108 KNKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 108 ~~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
-.+|+.+. ..+|.|.|.+|-.+.|.+.+||+|+=|+-++. ...+|--..|.+|.+..
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~g---------------~~qLIYKhAISTI~p~~ 67 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQG---------------KQHLIYKHAISTYTVET 67 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEETT---------------EEEEEEGGGEEEEEC--
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEECC---------------eeEEEEeeeEEEEeECc
Confidence 34566666 89999999999999999999999986665332 23456666677776543
No 28
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.87 E-value=0.015 Score=43.13 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecc
Q psy5557 109 NKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHK 146 (213)
Q Consensus 109 ~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsD 146 (213)
.+|+.+- ..+|.|.|.||-.+.|.+.|||+|+=|+-.+
T Consensus 14 ~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~ 53 (78)
T 3ahu_A 14 QFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESE 53 (78)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEEC
Confidence 4455554 8899999999999999999999999776543
No 29
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=95.66 E-value=0.064 Score=40.74 Aligned_cols=68 Identities=16% Similarity=0.113 Sum_probs=51.2
Q ss_pred hhcCCeEEEEecCCeEEEEEEEEec-CcCceEecceEEEeecCCc----c--ceeccceeeeecCcEEEEEeecc
Q psy5557 113 EEQNRQQGLYPNQKRTLIGYLRSVD-QFANLVLHKTIERIHVGNQ----Y--GDIPRGIFIIRGENVVLMGEVVT 180 (213)
Q Consensus 113 ~~LgKrV~V~LkDGR~~~GtL~gFD-q~mNLVLsDavEri~~~n~----~--~er~LGlVlIRGnnIV~I~~iD~ 180 (213)
.|||++|.++.+.+-.|.|+|..+| +..-|.|.++.-+=..+.. + ...-+..++.||+.|--+...+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 5899999999999999999999999 5668889998543221110 0 11235789999999999886553
No 30
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.51 E-value=0.019 Score=41.97 Aligned_cols=32 Identities=9% Similarity=0.174 Sum_probs=28.3
Q ss_pred cCCeEEEEecCCeEEEEEEEEecCcCceEecc
Q psy5557 115 QNRQQGLYPNQKRTLIGYLRSVDQFANLVLHK 146 (213)
Q Consensus 115 LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsD 146 (213)
-+.+|.|.|.||-.+.|.+.|||+|+=|+-.+
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~ 55 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVG 55 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEET
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEeC
Confidence 36799999999999999999999999777554
No 31
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.49 E-value=0.046 Score=42.61 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=40.3
Q ss_pred HHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 109 NKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 109 ~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
.+|+.+. ..+|.|.|.+|-.+.|.+.+||+|+=|+-++ ...||.-..|.+|.+..
T Consensus 12 ~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~----------------kqqLIYKHAISTI~p~~ 68 (104)
T 2y90_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT----------------VSQMVYKHAISTVVPSR 68 (104)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS----------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC----------------ceEEEEeeeeEEEeecc
Confidence 4555555 4499999999999999999999998666532 23456666677777654
No 32
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=95.44 E-value=0.028 Score=41.11 Aligned_cols=55 Identities=15% Similarity=0.077 Sum_probs=42.6
Q ss_pred HHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 109 NKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 109 ~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
.+|+.+. ..+|.|.|.+|-.+.|.+.+||+|+=++-++ ...+|.-..|.+|.+..
T Consensus 12 ~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~~----------------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 12 PFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT----------------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS----------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC----------------ceEEEEeeeEEEEeEcc
Confidence 4566666 8899999999999999999999998655421 23567777788887654
No 33
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.42 E-value=0.028 Score=42.16 Aligned_cols=35 Identities=23% Similarity=0.215 Sum_probs=29.5
Q ss_pred HHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEe
Q psy5557 110 KKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVL 144 (213)
Q Consensus 110 ~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVL 144 (213)
+|+.+- ..+|.|.|.||-.+.|.+.|||+|+=|+-
T Consensus 11 fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 11 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 444444 78999999999999999999999987664
No 34
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=95.09 E-value=0.06 Score=41.42 Aligned_cols=72 Identities=14% Similarity=0.089 Sum_probs=50.6
Q ss_pred HHHHHhhcCCeEEEEecCCeEEEEEEEEec-CcCceEecceEEEeecCC----cc--ceeccceeeeecCcEEEEEeec
Q psy5557 108 KNKKAEEQNRQQGLYPNQKRTLIGYLRSVD-QFANLVLHKTIERIHVGN----QY--GDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 108 ~~~L~~~LgKrV~V~LkDGR~~~GtL~gFD-q~mNLVLsDavEri~~~n----~~--~er~LGlVlIRGnnIV~I~~iD 179 (213)
...-..|||++|.++.+.+-.|.|+|..+| +-.-|.|.++.-+=..+. .+ ....+..++.||+.|-.|...+
T Consensus 11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 345678999999999999999999999999 566788998843211111 00 1123588999999999987655
No 35
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=94.70 E-value=0.26 Score=39.56 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=45.8
Q ss_pred HHhhcCCeEEEEecCCeEEEEEEEEecCcCceEe--cceEEEeecCCccceeccceeeeecCcEEEEEeecccc
Q psy5557 111 KAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVL--HKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVV 182 (213)
Q Consensus 111 L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVL--sDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~ 182 (213)
...|+|+.|.|.|+||..++|++..+| --+|+| ++|. +....|+.+.|.-+..+....
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~-------------~s~~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLAN-------------DSTKSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETT-------------TEEEEEEGGGEEEEEECCSCC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEeccccc-------------cccceeecccccceeeeeccc
Confidence 578999999999999999999999998 345666 8882 122278888888887766553
No 36
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.35 E-value=0.11 Score=37.76 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=43.0
Q ss_pred HHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEe
Q psy5557 109 NKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177 (213)
Q Consensus 109 ~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~ 177 (213)
..|..+-|++|-|.+....+|+|+|.-||.-. |+|.|++.+.. |. --.++|+=+.|-.|-.
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~G--Nk-----~k~liv~idDinWimL 69 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIG--NR-----GKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTE--EE-----EEEEEEEGGGEEEEEE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhc--cc-----cceeEEEeccceEEEe
Confidence 46889999999999999999999999999864 67888887642 22 1346666677666654
No 37
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=94.22 E-value=0.051 Score=40.38 Aligned_cols=55 Identities=13% Similarity=0.086 Sum_probs=40.7
Q ss_pred HHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeec
Q psy5557 109 NKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVV 179 (213)
Q Consensus 109 ~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD 179 (213)
.+|+.+. ..+|.|.|.+|-.+.|.+.+||+|+=|+ .+ + ...+|.-..|.+|.+..
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~~-------g--------~~qLIYKhAISTI~P~~ 67 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL-RN-------T--------VTQMVYKHAISTVVPAR 67 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE-ES-------S--------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE-EC-------C--------ceEEEEeeeEEEEeecC
Confidence 4555554 5679999999999999999999998665 21 1 23467777788887643
No 38
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=94.17 E-value=0.15 Score=38.45 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=51.0
Q ss_pred HhhcCCeEEEEecCCe-EEEEEEEEecCc-CceEecceEEEeecCCccceeccceeeeecCcEEEEEeeccc
Q psy5557 112 AEEQNRQQGLYPNQKR-TLIGYLRSVDQF-ANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTV 181 (213)
Q Consensus 112 ~~~LgKrV~V~LkDGR-~~~GtL~gFDq~-mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~ 181 (213)
.+|||+.|.|.-.++. .|+|.|..+|.. .||.|.+++ .++ + ......|.+++..|..+..+...
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG--~-~~~s~eVtls~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNG--V-KCLVPEVTFRAGDITELKILEIP 70 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETT--E-ECSSSEEEEEGGGCSEEEEEECC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCC--C-CCCCcEEEEEecChhheEEEecC
Confidence 3799999999999999 999999999976 589999994 333 2 23346688999888888776544
No 39
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=91.44 E-value=1.4 Score=32.05 Aligned_cols=58 Identities=5% Similarity=-0.047 Sum_probs=43.0
Q ss_pred HHHHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEee
Q psy5557 107 KKNKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178 (213)
Q Consensus 107 ~~~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~i 178 (213)
+...|+.|| ..+|.|.|.+|..++|.+.-+|+|.=.+.++. . ..++|....|+||-+.
T Consensus 12 svR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~~-------~-------~~~LI~R~AI~~Ikp~ 71 (72)
T 3hfn_A 12 SIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADEN-------S-------RQTTIWKQAIAYLQPK 71 (72)
T ss_dssp HHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC-----------------CEEEEEGGGEEEEEEC
T ss_pred cHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcCC-------C-------CeEEEEeeeeEEEEeC
Confidence 456778888 56899999999999999999999864433221 1 2377888889988753
No 40
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=91.20 E-value=1.4 Score=32.03 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=42.0
Q ss_pred HHHHHHhhc--CCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEe
Q psy5557 107 KKNKKAEEQ--NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177 (213)
Q Consensus 107 ~~~~L~~~L--gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~ 177 (213)
+...|..|+ ..+|.|.|.+|..++|.+..||+|.=++.++ +. -.++|....|++|-+
T Consensus 10 svR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~-------~~-------~~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 10 SVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLVDD-------SE-------RSTIVRLAAIAYITP 68 (70)
T ss_dssp HHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEECT-------TC-------CEEEEEGGGEEEEEE
T ss_pred cHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEEcC-------CC-------CeEEEEeeeeEEEee
Confidence 345666776 6789999999999999999999986444322 11 135777788888864
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=89.95 E-value=0.35 Score=41.79 Aligned_cols=36 Identities=14% Similarity=0.170 Sum_probs=31.7
Q ss_pred HhhcCCeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 112 AEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 112 ~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..++|++|.|.+.+|..+.|++.|+|..+.|+|...
T Consensus 220 ~~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 220 SLTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp BSSTTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred hcccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 345799999998889999999999999999999754
No 42
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=88.82 E-value=0.31 Score=40.97 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=36.4
Q ss_pred HHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeec
Q psy5557 109 NKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRG 169 (213)
Q Consensus 109 ~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRG 169 (213)
.....++|++|.|...++ +.|++.|+|..+.|+|...... ...+.|.|.+|+
T Consensus 181 ~~~~~~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~~G~-------~~~~~Gev~~r~ 232 (233)
T 2eay_A 181 ESKMLYLGEEVKLLGEGK--ITGKLVGLSEKGGALILTEEGI-------KEILSGEFSLRR 232 (233)
T ss_dssp HHHBTTTTSEEEETTEEE--EEEEEEEECTTSCEEEEETTEE-------EEECSCCEEEC-
T ss_pred HHhhcccCCEEEEEECCe--EEEEEEEECCCCeEEEEECCCe-------EEEEEeEEEEec
Confidence 344456899999986555 9999999999999999753111 122357777765
No 43
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=88.19 E-value=0.83 Score=39.85 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=37.7
Q ss_pred HHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeec
Q psy5557 109 NKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRG 169 (213)
Q Consensus 109 ~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRG 169 (213)
.....++|++|.|... +..+.|++.|+|..+.|+|..... ......|.|.+|+
T Consensus 266 ~~~~~~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~~g-------~~~~~~Gev~~r~ 318 (321)
T 1bia_A 266 EKLDNFINRPVKLIIG-DKEIFGISRGIDKQGALLLEQDGI-------IKPWMGGEISLRS 318 (321)
T ss_dssp HHHBTTTTSEEEEEET-TEEEEEEEEEECTTSCEEEEETTE-------EEEESSCEEEEC-
T ss_pred HHhhhhcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEECCC-------EEEEEeeeEEEec
Confidence 3445568999999875 458999999999999999965321 1123457777764
No 44
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=85.87 E-value=0.57 Score=39.55 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=24.7
Q ss_pred cCCeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 115 QNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 115 LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
+|++|.|...++ +.|++.|+|..+.|+|.+.
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 218 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD 218 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC
Confidence 799999998776 9999999999999999753
No 45
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=85.55 E-value=1.2 Score=37.38 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=29.7
Q ss_pred HhhcCCeEEEEecCCeEEEEEEEEecCcCceEecc
Q psy5557 112 AEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHK 146 (213)
Q Consensus 112 ~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsD 146 (213)
.-++|++|.|...++..+.|++.|+|..+.|+ .+
T Consensus 188 ~~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 188 SITIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp BSSTTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred hCccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 34689999999988877999999999999999 54
No 46
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=85.47 E-value=1.1 Score=36.26 Aligned_cols=35 Identities=11% Similarity=0.157 Sum_probs=28.3
Q ss_pred HHHHhhcCCeEEEEe----cCCeEEEEEEEEecCcCceEe
Q psy5557 109 NKKAEEQNRQQGLYP----NQKRTLIGYLRSVDQFANLVL 144 (213)
Q Consensus 109 ~~L~~~LgKrV~V~L----kDGR~~~GtL~gFDq~mNLVL 144 (213)
..+..++|..|.|.| .+.+.|.|+|.++|.- +++|
T Consensus 97 ~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 97 DAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp HHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred HHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 457889999999999 4458999999999964 3444
No 47
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=76.47 E-value=24 Score=27.26 Aligned_cols=66 Identities=3% Similarity=0.106 Sum_probs=51.3
Q ss_pred HhhcCCeEEEEecCCe-EEEEEEEEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecccc
Q psy5557 112 AEEQNRQQGLYPNQKR-TLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVV 182 (213)
Q Consensus 112 ~~~LgKrV~V~LkDGR-~~~GtL~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~ 182 (213)
.+|||+-|.|.-.+.- .|+|.+..+|. .+|+|.+|+- ++-.. ......|.++...|..+..++...
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr---NGipl-k~~~~EVtLsa~DI~~L~IIe~~~ 74 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR---NGVPL-RKQNAEVVLKCTDIRSIDLIEPAK 74 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE---TTEEC-SCSSSCEEEETTTEEEEEEEECCC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh---cCcCc-CCCCceEEEEecchhheeeecccc
Confidence 4799999999999987 99999999995 5599999853 33210 124577999999999988876554
No 48
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=74.06 E-value=3.2 Score=36.58 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=29.6
Q ss_pred HHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 110 KKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 110 ~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
.+..++|++|.|... +..+.|+..|+|..+.|+|.+.
T Consensus 273 ~~~~~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~~ 309 (323)
T 3rkx_A 273 AASNIWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRDE 309 (323)
T ss_dssp HTBSCSSSCEEEECC--CEEEEEEEEECTTSCEEEEET
T ss_pred HHHhhcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEEC
Confidence 344567999999864 5679999999999999999643
No 49
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=73.04 E-value=4.1 Score=33.93 Aligned_cols=34 Identities=15% Similarity=0.090 Sum_probs=28.0
Q ss_pred HHHHhhcCCeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 109 NKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 109 ~~L~~~LgKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
.....++|++|.| +| +.|++.|+|..+.|+|...
T Consensus 187 ~~~~~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 187 RGLAHGMGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp HHHBTTTTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred HHHHhhcCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 3444568999999 45 9999999999999999653
No 50
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=53.27 E-value=24 Score=25.60 Aligned_cols=24 Identities=13% Similarity=0.062 Sum_probs=20.4
Q ss_pred hcCCeEEEEecCCeEEEEEEEEec
Q psy5557 114 EQNRQQGLYPNQKRTLIGYLRSVD 137 (213)
Q Consensus 114 ~LgKrV~V~LkDGR~~~GtL~gFD 137 (213)
.+|..|.+.-.||+.|.||++...
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEC
T ss_pred ccCCeEEEEecCCCEEEEEEEecC
Confidence 367889999999999999996555
No 51
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=53.01 E-value=29 Score=31.30 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=27.4
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.||+.|.+.+.++|...+|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999998877554
No 52
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=46.69 E-value=36 Score=25.63 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=32.1
Q ss_pred hhHHHHHHHHhhcCCeEEEEecCCe----EEEEEEEEecCcCceEe
Q psy5557 103 KKEEKKNKKAEEQNRQQGLYPNQKR----TLIGYLRSVDQFANLVL 144 (213)
Q Consensus 103 ~keE~~~~L~~~LgKrV~V~LkDGR----~~~GtL~gFDq~mNLVL 144 (213)
+...+...|..++|++|.|+.+.|| .-.|+|... |-+|.+
T Consensus 12 ~l~~IK~~l~~~vG~~V~l~An~GRkK~~er~GvL~et--YPSvFv 55 (90)
T 3fb9_A 12 KMKKIKEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV--YPSLFI 55 (90)
T ss_dssp HHHHHHHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE--CSSEEE
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe--cCcEEE
Confidence 4567889999999999999999996 678998865 444444
No 53
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=46.34 E-value=25 Score=24.68 Aligned_cols=26 Identities=12% Similarity=0.078 Sum_probs=23.0
Q ss_pred cCCeEEEEecCCeEEEEEEEEecCcC
Q psy5557 115 QNRQQGLYPNQKRTLIGYLRSVDQFA 140 (213)
Q Consensus 115 LgKrV~V~LkDGR~~~GtL~gFDq~m 140 (213)
.|.-|.+.-.||+.|-||+..+|...
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAR 31 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCC
Confidence 47789999999999999999998764
No 54
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=43.35 E-value=26 Score=31.88 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=27.1
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.||+.|.+.+.++|...+|-|-.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3689999999999999999999999877554
No 55
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=41.69 E-value=20 Score=27.48 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=35.8
Q ss_pred CCeEEEEecCCeEEEEEEE-------EecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeeccc
Q psy5557 116 NRQQGLYPNQKRTLIGYLR-------SVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTV 181 (213)
Q Consensus 116 gKrV~V~LkDGR~~~GtL~-------gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~ 181 (213)
.-+|.|.|.||+.+.||+- =||...|-=+.--. +++..+ ...---.|.-|.|+.|.++...
T Consensus 28 q~~v~i~l~DGs~l~GTvavrPTiQ~y~d~~~~eG~NGql-RlD~~D----~~~eph~iWmD~I~aV~plp~g 95 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSNGQL-RIDHLD----ASQEPQWIWMDRIVAVHPMPLG 95 (101)
T ss_dssp TCEEEEEETTSCEEEEEESSCCCEEEEECTTCCEEEEEEE-EEECSS----SSCSCEEEEGGGEEEEEECC--
T ss_pred eeEEEEEEcCCCeEeeeeccCchHHHhhCcccccCccceE-EeccCC----CcccceeEeeeeeeeeecccCC
Confidence 4689999999999999973 34555443322211 121111 1122357888889998876543
No 56
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=41.35 E-value=2.2 Score=32.76 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=17.1
Q ss_pred EEEEEEecCcCceEecceE
Q psy5557 130 IGYLRSVDQFANLVLHKTI 148 (213)
Q Consensus 130 ~GtL~gFDq~mNLVLsDav 148 (213)
-|++.+||.-.||.|.+|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 5679999999999999994
No 57
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=36.09 E-value=38 Score=29.62 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.6
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.||+.|.+.+.++|...+|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 3688999999999999999999888876543
No 58
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=32.66 E-value=48 Score=28.18 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=26.6
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.||+.|.+.+.+||...+|-|-..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 3588999999999999999999888877544
No 59
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=32.55 E-value=36 Score=30.92 Aligned_cols=31 Identities=19% Similarity=0.083 Sum_probs=27.1
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.||+.|.+.+.++|...+|-|-..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 3689999999999999999999998877554
No 60
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=32.09 E-value=46 Score=27.75 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=26.0
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.||+.|.+.+.++|....|-|-..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 3688999999999999999999888876443
No 61
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=31.15 E-value=46 Score=28.25 Aligned_cols=32 Identities=9% Similarity=0.034 Sum_probs=26.8
Q ss_pred CCeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 116 NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 116 gKrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
...|.|.+.||+.|.+.+.+||...+|-|-..
T Consensus 63 ~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 63 PPKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp -CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 34799999999999999999999888877543
No 62
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=31.02 E-value=57 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.6
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..+.|.+.||+.+.+.+.++|...+|-|-..
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l 107 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 107 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4789999999999999999999888776543
No 63
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=30.15 E-value=60 Score=26.39 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.8
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.+|+.+.+.+.++|...+|-|-..
T Consensus 87 ~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 87 HRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred ceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 5789999999999999999999888777543
No 64
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=29.66 E-value=63 Score=30.69 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=25.1
Q ss_pred CeEEEEec-CCeEEEEEEEEecCcCceEecc
Q psy5557 117 RQQGLYPN-QKRTLIGYLRSVDQFANLVLHK 146 (213)
Q Consensus 117 KrV~V~Lk-DGR~~~GtL~gFDq~mNLVLsD 146 (213)
..|.|.+. ||+.|.+.+.++|....|-|-.
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 46788884 9999999999999998887643
No 65
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=29.25 E-value=55 Score=27.74 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=23.5
Q ss_pred EEecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEe
Q psy5557 134 RSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177 (213)
Q Consensus 134 ~gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~ 177 (213)
+|+|..|.++|.++. +..+.......-+.|+|.|+-|+.|++
T Consensus 1 ~~~~~~~~~li~n~~--v~~~~~~~~~~~~~v~I~~g~I~~vg~ 42 (418)
T 2qs8_A 1 MSLDVDSKTLIHAGK--LIDGKSDQVQSRISIVIDGNIISDIKK 42 (418)
T ss_dssp ------CCEEEEEEE--ECCSSCSSCEEEEEEEEETTEEEEEEE
T ss_pred CCCCCCccEEEEeeE--EEeCCCCccccCcEEEEECCEEEEEeC
Confidence 367888888888874 333221111233789999999999975
No 66
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=28.95 E-value=60 Score=27.79 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=26.5
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.||+.|.+.+.+||...+|-|-..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 4689999999999999999999888877544
No 67
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=28.02 E-value=73 Score=22.77 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=22.3
Q ss_pred cCCeEEEEecCCeEEEEEEEEecCc
Q psy5557 115 QNRQQGLYPNQKRTLIGYLRSVDQF 139 (213)
Q Consensus 115 LgKrV~V~LkDGR~~~GtL~gFDq~ 139 (213)
+|-.|+..-.||+.|-|++..+|..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5778999999999999999999874
No 68
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=26.86 E-value=44 Score=26.41 Aligned_cols=65 Identities=8% Similarity=-0.006 Sum_probs=41.1
Q ss_pred HHHHHHHHhhcCCeEEEEecCCeEEEEEEE--EecCcCceEecceEEEeecCCccceeccceeeeecCcEEEEEeecccc
Q psy5557 105 EEKKNKKAEEQNRQQGLYPNQKRTLIGYLR--SVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVV 182 (213)
Q Consensus 105 eE~~~~L~~~LgKrV~V~LkDGR~~~GtL~--gFDq~mNLVLsDavEri~~~n~~~er~LGlVlIRGnnIV~I~~iD~~~ 182 (213)
..-++.|..+.|..|.|.-.=.-.++|.|. ..|+++++++.- .|+...+-.||++|.+.++..
T Consensus 26 ~~vL~~lA~~~g~nivvs~~V~G~vs~rl~~~~~~q~L~~l~~~---------------~gL~~~~dG~vl~V~~~~e~~ 90 (156)
T 3gr5_A 26 RAILNDFAANYSIPVFISSSVNDDFSGEIKNEKPVKVLEKLSKL---------------YHLTWYYDENILYIYKTNEIS 90 (156)
T ss_dssp HHHHHHHHHHTTCCEEECTTCCCEEEEEEEEECHHHHHHHHHHH---------------HTEEEEECSSCEEEEEGGGCE
T ss_pred HHHHHHHHHhhCCCEEECCCcceEEEEEecCCCHHHHHHHHHHH---------------CCceEEEECCEEEEEchHHhE
Confidence 345677888888888876433345777764 455666665533 366666666777777766544
Q ss_pred cc
Q psy5557 183 NV 184 (213)
Q Consensus 183 d~ 184 (213)
..
T Consensus 91 t~ 92 (156)
T 3gr5_A 91 RS 92 (156)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 69
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=26.08 E-value=69 Score=25.00 Aligned_cols=24 Identities=4% Similarity=-0.143 Sum_probs=21.5
Q ss_pred hcCCeEEEEecCCeEEEEEEEEec
Q psy5557 114 EQNRQQGLYPNQKRTLIGYLRSVD 137 (213)
Q Consensus 114 ~LgKrV~V~LkDGR~~~GtL~gFD 137 (213)
.+|.+|+....+|+.|.|++.+..
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~ 30 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLT 30 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEe
Confidence 478999999999999999998865
No 70
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=26.08 E-value=41 Score=29.26 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.8
Q ss_pred CeEEEEEEEEecCcCceEecc
Q psy5557 126 KRTLIGYLRSVDQFANLVLHK 146 (213)
Q Consensus 126 GR~~~GtL~gFDq~mNLVLsD 146 (213)
+..+.|...-+|.|+|++++=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 446889999999999998754
No 71
>1njh_A Protein YOJF; structural genomics, PSI, protein structure initiative center for structural genomics, MCSG, unknown function; 1.70A {Bacillus subtilis} SCOP: b.128.1.1
Probab=25.90 E-value=1.6e+02 Score=23.32 Aligned_cols=22 Identities=5% Similarity=-0.052 Sum_probs=17.7
Q ss_pred HHHHHHHhhcCCeEEEEe--cCCe
Q psy5557 106 EKKNKKAEEQNRQQGLYP--NQKR 127 (213)
Q Consensus 106 E~~~~L~~~LgKrV~V~L--kDGR 127 (213)
+-...|.+|.|++|+|.| ++|-
T Consensus 11 ~VQ~~L~~f~~~~VYiHlETTnGA 34 (119)
T 1njh_A 11 DVQASLERYADRPVYIHLETTTGS 34 (119)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEECC
T ss_pred HHHHHHHHhcCCceEEEEEecCch
Confidence 456789999999999988 5553
No 72
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=24.06 E-value=50 Score=28.70 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=17.6
Q ss_pred CeEEEEEEEEecCcCceEecc
Q psy5557 126 KRTLIGYLRSVDQFANLVLHK 146 (213)
Q Consensus 126 GR~~~GtL~gFDq~mNLVLsD 146 (213)
+..+.|...-+|.|+|++++=
T Consensus 167 ~~~i~g~V~~iD~FGN~iTnI 187 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTNI 187 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEEE
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 456889999999999998743
No 73
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=23.25 E-value=77 Score=27.38 Aligned_cols=31 Identities=10% Similarity=0.063 Sum_probs=26.6
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..+.|.+.||+.|.+.+.++|...+|-|-..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 4689999999999999999999888776543
No 74
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=21.63 E-value=1.1e+02 Score=26.09 Aligned_cols=31 Identities=19% Similarity=0.203 Sum_probs=26.5
Q ss_pred CeEEEEecCCeEEEEEEEEecCcCceEecce
Q psy5557 117 RQQGLYPNQKRTLIGYLRSVDQFANLVLHKT 147 (213)
Q Consensus 117 KrV~V~LkDGR~~~GtL~gFDq~mNLVLsDa 147 (213)
..|.|.+.+|+.|.+.+.++|...+|-|-..
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l 100 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIKI 100 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEEE
Confidence 4689999999999999999999888776443
Done!