Your job contains 1 sequence.
>psy5557
MKISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK
EKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQG
LYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVT
VVNVKVIKGGDSGKKWLRGVKQGVDQLSLAKER
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5557
(213 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0261067 - symbol:LSm1 species:7227 "Drosophila mel... 243 1.3e-20 1
UNIPROTKB|Q5E9Z8 - symbol:LSM1 "U6 snRNA-associated Sm-li... 236 7.2e-20 1
UNIPROTKB|E2R7S6 - symbol:LSM1 "Uncharacterized protein" ... 236 7.2e-20 1
UNIPROTKB|O15116 - symbol:LSM1 "U6 snRNA-associated Sm-li... 236 7.2e-20 1
UNIPROTKB|I3LCU8 - symbol:LSM1 "Uncharacterized protein" ... 236 7.2e-20 1
MGI|MGI:1914457 - symbol:Lsm1 "LSM1 homolog, U6 small nuc... 236 7.2e-20 1
RGD|1304967 - symbol:Lsm1 "LSM1 homolog, U6 small nuclear... 236 7.2e-20 1
ZFIN|ZDB-GENE-040801-68 - symbol:lsm1 "LSM1 homolog, U6 s... 228 5.1e-19 1
POMBASE|SPBC3D6.08c - symbol:lsm1 "mRNA decapping complex... 182 3.8e-14 1
UNIPROTKB|E1C962 - symbol:E1C962 "Uncharacterized protein... 176 1.6e-13 1
TAIR|locus:2087522 - symbol:LSM1B "SM-like 1B" species:37... 164 3.1e-12 1
TAIR|locus:2011246 - symbol:LSM1A "SM-like 1A" species:37... 163 3.9e-12 1
DICTYBASE|DDB_G0279837 - symbol:lsm1 "LSM (like-Sm) domai... 155 2.8e-11 1
CGD|CAL0004008 - symbol:orf19.7290 species:5476 "Candida ... 146 2.5e-10 1
SGD|S000003660 - symbol:LSM1 "Lsm (Like Sm) protein" spec... 145 3.2e-10 1
WB|WBGene00003076 - symbol:lsm-1 species:6239 "Caenorhabd... 136 2.9e-09 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 107 3.4e-06 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 104 7.0e-06 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 104 7.0e-06 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 104 7.0e-06 1
POMBASE|SPCC1840.10 - symbol:lsm8 "U6 snRNP-associated pr... 101 1.5e-05 1
GENEDB_PFALCIPARUM|MAL8P1.9 - symbol:MAL8P1.9 "u6 snRNA-a... 91 0.00017 1
UNIPROTKB|C0H4Y9 - symbol:MAL8P1.9 "U6 snRNA-associated S... 91 0.00017 1
TAIR|locus:2061446 - symbol:SNRNP-G "AT2G23930" species:3... 89 0.00027 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 88 0.00035 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 86 0.00057 1
GENEDB_PFALCIPARUM|MAL8P1.48 - symbol:MAL8P1.48 "small nu... 84 0.00093 1
>FB|FBgn0261067 [details] [associations]
symbol:LSm1 species:7227 "Drosophila melanogaster"
[GO:0030532 "small nuclear ribonucleoprotein complex" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IMP] INTERPRO:IPR001163 EMBL:AE013599
GO:GO:0005681 GO:GO:0000398 GO:GO:0033962 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620
OMA:IERIHVG HSSP:Q8ZYG5 EMBL:BT022249 RefSeq:NP_611559.1
UniGene:Dm.26990 SMR:Q9W2K2 IntAct:Q9W2K2 MINT:MINT-289058
STRING:Q9W2K2 EnsemblMetazoa:FBtr0071628 GeneID:37413
KEGG:dme:Dmel_CG4279 UCSC:CG4279-RA FlyBase:FBgn0261067
InParanoid:Q9W2K2 OrthoDB:EOG4GTHWB GenomeRNAi:37413 NextBio:803505
Uniprot:Q9W2K2
Length = 137
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 46/51 (90%), Positives = 50/51 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIGYLRSVDQFANLVL +TIERIHVGN+YGDIPRG+FIIRGENVVL+GE
Sbjct: 29 RTLIGYLRSVDQFANLVLQRTIERIHVGNEYGDIPRGVFIIRGENVVLLGE 79
>UNIPROTKB|Q5E9Z8 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9913 "Bos taurus" [GO:0071044 "histone mRNA catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
EMBL:BT020738 EMBL:BT020771 EMBL:BT020779 IPI:IPI00696891
RefSeq:NP_001017952.1 UniGene:Bt.2005 ProteinModelPortal:Q5E9Z8
STRING:Q5E9Z8 Ensembl:ENSBTAT00000002113 GeneID:535447
KEGG:bta:535447 CTD:27257 eggNOG:NOG236501
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 InParanoid:Q5E9Z8 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 NextBio:20876751 ArrayExpress:Q5E9Z8
Uniprot:Q5E9Z8
Length = 133
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 42/51 (82%), Positives = 50/51 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
>UNIPROTKB|E2R7S6 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071044 "histone mRNA catabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
EMBL:AAEX03010393 RefSeq:XP_532806.3 ProteinModelPortal:E2R7S6
SMR:E2R7S6 PRIDE:E2R7S6 Ensembl:ENSCAFT00000009901 GeneID:475587
KEGG:cfa:475587 NextBio:20851398 Uniprot:E2R7S6
Length = 133
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 42/51 (82%), Positives = 50/51 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
>UNIPROTKB|O15116 [details] [associations]
symbol:LSM1 "U6 snRNA-associated Sm-like protein LSm1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=TAS]
[GO:0071044 "histone mRNA catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 EMBL:AF000177 INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 EMBL:CH471080 GO:GO:0006397 GO:GO:0003723
GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0000375 GO:GO:0043928 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27257 eggNOG:NOG236501 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:AJ238094 EMBL:AK312159 EMBL:BC001767 IPI:IPI00004436
RefSeq:NP_055277.1 UniGene:Hs.425311 ProteinModelPortal:O15116
SMR:O15116 DIP:DIP-31130N IntAct:O15116 MINT:MINT-1036791
STRING:O15116 PhosphoSite:O15116 PaxDb:O15116 PeptideAtlas:O15116
PRIDE:O15116 DNASU:27257 Ensembl:ENST00000311351 GeneID:27257
KEGG:hsa:27257 UCSC:uc003xkw.3 GeneCards:GC08M038020
HGNC:HGNC:20472 HPA:HPA024601 MIM:607281 neXtProt:NX_O15116
PharmGKB:PA134864226 InParanoid:O15116 PhylomeDB:O15116
GenomeRNAi:27257 NextBio:50202 ArrayExpress:O15116 Bgee:O15116
CleanEx:HS_LSM1 Genevestigator:O15116 GermOnline:ENSG00000175324
Uniprot:O15116
Length = 133
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 42/51 (82%), Positives = 50/51 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
>UNIPROTKB|I3LCU8 [details] [associations]
symbol:LSM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071044 "histone mRNA catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0005737
GO:GO:0071044 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 GeneTree:ENSGT00570000079167
OMA:IERIHVG EMBL:FP565893 Ensembl:ENSSSCT00000027118 Uniprot:I3LCU8
Length = 133
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 42/51 (82%), Positives = 50/51 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
>MGI|MGI:1914457 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071044 "histone mRNA
catabolic process" evidence=ISO] MGI:MGI:1914457 INTERPRO:IPR001163
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 EMBL:BC021460 IPI:IPI00121579 RefSeq:NP_080308.1
UniGene:Mm.30198 ProteinModelPortal:Q8VC85 SMR:Q8VC85 STRING:Q8VC85
PhosphoSite:Q8VC85 REPRODUCTION-2DPAGE:Q8VC85 PaxDb:Q8VC85
PRIDE:Q8VC85 DNASU:67207 Ensembl:ENSMUST00000038421 GeneID:67207
KEGG:mmu:67207 InParanoid:Q8VC85 NextBio:323882 Bgee:Q8VC85
Genevestigator:Q8VC85 GermOnline:ENSMUSG00000037296 Uniprot:Q8VC85
Length = 133
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 42/51 (82%), Positives = 50/51 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
>RGD|1304967 [details] [associations]
symbol:Lsm1 "LSM1 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0071044 "histone mRNA catabolic process"
evidence=IEA;ISO] RGD:1304967 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0005737 EMBL:CH473970 GO:GO:0071044 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
CTD:27257 GeneTree:ENSGT00570000079167 KO:K12620 OMA:IERIHVG
OrthoDB:EOG4BRWN3 IPI:IPI00359977 RefSeq:NP_001102346.1
UniGene:Rn.128606 Ensembl:ENSRNOT00000020721 GeneID:364624
KEGG:rno:364624 UCSC:RGD:1304967 NextBio:685701 Uniprot:D3ZWB1
Length = 133
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 42/51 (82%), Positives = 50/51 (98%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIG+LRS+DQFANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE
Sbjct: 26 RTLIGFLRSIDQFANLVLHQTVERIHVGRKYGDIPRGIFVVRGENVVLLGE 76
>ZFIN|ZDB-GENE-040801-68 [details] [associations]
symbol:lsm1 "LSM1 homolog, U6 small nuclear RNA
associated (S. cerevisiae)" species:7955 "Danio rerio" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163
ZFIN:ZDB-GENE-040801-68 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27257
eggNOG:NOG236501 GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544
HOVERGEN:HBG027238 KO:K12620 OMA:IERIHVG OrthoDB:EOG4BRWN3
EMBL:CR931937 EMBL:BC078334 IPI:IPI00505530 RefSeq:NP_001003551.1
UniGene:Dr.76743 STRING:Q6DBW5 Ensembl:ENSDART00000063392
GeneID:445157 KEGG:dre:445157 InParanoid:Q6DBW5 NextBio:20831919
Uniprot:Q6DBW5
Length = 133
Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
Identities = 41/51 (80%), Positives = 49/51 (96%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
RTLIG LRS+DQFANLVLH+T+ERIHVG ++GDIPRGIF++RGENVVL+GE
Sbjct: 26 RTLIGILRSIDQFANLVLHQTVERIHVGKKFGDIPRGIFVVRGENVVLLGE 76
>POMBASE|SPBC3D6.08c [details] [associations]
symbol:lsm1 "mRNA decapping complex subunit (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000339 "RNA cap binding" evidence=ISO]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005845 "mRNA
cap binding complex" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] PomBase:SPBC3D6.08c INTERPRO:IPR001163 GO:GO:0005829
GO:GO:0005634 GO:GO:0008380 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0006396 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223544
KO:K12620 eggNOG:COG1958 PIR:T40368 RefSeq:NP_595520.1
ProteinModelPortal:P87173 STRING:P87173 EnsemblFungi:SPBC3D6.08c.1
GeneID:2540520 KEGG:spo:SPBC3D6.08c OMA:YTIERIY OrthoDB:EOG4GQTF9
NextBio:20801647 Uniprot:P87173
Length = 140
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 35/51 (68%), Positives = 43/51 (84%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
+ LIG LRS DQFANL+L TIERI+V + YGDI RG++I+RGENVVL+GE
Sbjct: 32 KKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGE 82
>UNIPROTKB|E1C962 [details] [associations]
symbol:E1C962 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071044 "histone mRNA catabolic
process" evidence=IEA] GO:GO:0005634 GO:GO:0005737 GO:GO:0071044
GeneTree:ENSGT00570000079167 EMBL:AADN02054859 EMBL:AADN02054860
IPI:IPI00588760 Ensembl:ENSGALT00000005131 OMA:QDIDSEC
Uniprot:E1C962
Length = 133
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/38 (81%), Positives = 37/38 (97%)
Query: 140 ANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
ANLVLH+T+ERIHVG +YGDIPRGIF++RGENVVL+GE
Sbjct: 39 ANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
>TAIR|locus:2087522 [details] [associations]
symbol:LSM1B "SM-like 1B" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223544 KO:K12620 eggNOG:COG1958
HSSP:Q8ZYG5 EMBL:AY084768 EMBL:BT002795 EMBL:BT004340
IPI:IPI00537844 RefSeq:NP_566476.1 RefSeq:NP_850580.1
UniGene:At.39294 ProteinModelPortal:Q8LFL8 SMR:Q8LFL8 IntAct:Q8LFL8
STRING:Q8LFL8 PaxDb:Q8LFL8 PRIDE:Q8LFL8 EnsemblPlants:AT3G14080.1
EnsemblPlants:AT3G14080.2 GeneID:820624 KEGG:ath:AT3G14080
TAIR:At3g14080 InParanoid:Q8LFL8 OMA:TEREELP PhylomeDB:Q8LFL8
ProtClustDB:CLSN2687863 ArrayExpress:Q8LFL8 Genevestigator:Q8LFL8
Uniprot:Q8LFL8
Length = 128
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 33/51 (64%), Positives = 39/51 (76%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
R L+G LRS DQFAN VL ER+ VG QY DIP G+++IRGENVVL+GE
Sbjct: 31 RKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIPLGLYVIRGENVVLIGE 81
>TAIR|locus:2011246 [details] [associations]
symbol:LSM1A "SM-like 1A" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002684 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12620 HSSP:Q8ZYG5 UniGene:At.15081
UniGene:At.22114 ProtClustDB:CLSN2687863 EMBL:AF411792
EMBL:AY094024 IPI:IPI00538869 RefSeq:NP_564072.1
ProteinModelPortal:Q945P8 SMR:Q945P8 STRING:Q945P8 PRIDE:Q945P8
EnsemblPlants:AT1G19120.1 GeneID:838495 KEGG:ath:AT1G19120
TAIR:At1g19120 InParanoid:Q945P8 OMA:AYERVIV PhylomeDB:Q945P8
Genevestigator:Q945P8 Uniprot:Q945P8
Length = 128
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
R L+G LRS DQFAN VL + ER+ VG+ Y DIP G++IIRGENVVL+GE
Sbjct: 31 RKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDIPLGLYIIRGENVVLIGE 81
>DICTYBASE|DDB_G0279837 [details] [associations]
symbol:lsm1 "LSM (like-Sm) domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0279837 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0000932
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AAFI02000033
Pfam:PF01423 GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
KO:K12620 OMA:IERIHVG RefSeq:XP_641509.1 HSSP:O26745
ProteinModelPortal:Q54W83 STRING:Q54W83 EnsemblProtists:DDB0233402
GeneID:8622249 KEGG:ddi:DDB_G0279837 eggNOG:COG1958
ProtClustDB:CLSZ2430662 Uniprot:Q54W83
Length = 129
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 30/51 (58%), Positives = 39/51 (76%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
R IG +R+ DQFAN+VL TIERI+VG+ Y D G+F IRG+NVV++GE
Sbjct: 21 RKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGE 71
>CGD|CAL0004008 [details] [associations]
symbol:orf19.7290 species:5476 "Candida albicans" [GO:0000339
"RNA cap binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005845 "mRNA cap binding complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] CGD:CAL0004008
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACQ01000069 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12620 eggNOG:COG1958 RefSeq:XP_716425.1
ProteinModelPortal:Q5A417 STRING:Q5A417 GeneID:3641913
KEGG:cal:CaO19.7290 Uniprot:Q5A417
Length = 167
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIP-------RGIFIIRGENVVLMGE 177
R L G LR+ DQFANLVL T+ERI++G + G+ P RG+F++RGENVV++GE
Sbjct: 53 RNLFGILRTFDQFANLVLQDTLERIYLGEE-GEAPTRFSETYRGVFMVRGENVVMLGE 109
>SGD|S000003660 [details] [associations]
symbol:LSM1 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000339 "RNA cap binding"
evidence=IGI;IMP;IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI;IMP]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IGI;IMP;IPI] [GO:0005845 "mRNA
cap binding complex" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000003660 INTERPRO:IPR001163 GO:GO:0005634
EMBL:BK006943 GO:GO:0006397 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544 KO:K12620
eggNOG:COG1958 OrthoDB:EOG4GQTF9 EMBL:Z49399 EMBL:AY558307
PIR:S56905 RefSeq:NP_012411.1 ProteinModelPortal:P47017 SMR:P47017
DIP:DIP-1330N IntAct:P47017 MINT:MINT-390497 STRING:P47017
PaxDb:P47017 PeptideAtlas:P47017 EnsemblFungi:YJL124C GeneID:853318
KEGG:sce:YJL124C CYGD:YJL124c OMA:FMVRGEN NextBio:973666
Genevestigator:P47017 GermOnline:YJL124C Uniprot:P47017
Length = 172
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVG--NQYGDIPRGIFIIRGENVVLMGE 177
R L G LR+ DQ+ANL+L +ERI+ N+Y + RGIF+IRGENVV++GE
Sbjct: 62 RMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENVVMLGE 114
>WB|WBGene00003076 [details] [associations]
symbol:lsm-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 KO:K12620 EMBL:Z69302 PIR:T22035
RefSeq:NP_496385.1 HSSP:Q8ZYG5 ProteinModelPortal:Q20229 SMR:Q20229
STRING:Q20229 PaxDb:Q20229 EnsemblMetazoa:F40F8.9 GeneID:174700
KEGG:cel:CELE_F40F8.9 UCSC:F40F8.9 CTD:174700 WormBase:F40F8.9
InParanoid:Q20229 OMA:YYSEISH NextBio:885130 Uniprot:Q20229
Length = 125
Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
R LIG+LRS+DQFANL+L +ER V + + +G +IRGENV L GE
Sbjct: 30 RKLIGFLRSIDQFANLILEDVVERTFVEKYFCETGQGFMLIRGENVELAGE 80
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
R++IG LR +DQ N+VL K ER++ IP G+ +I+G++V ++GE
Sbjct: 20 RSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKGDDVAVIGE 70
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 116 NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQ-YGDIPRGIFIIRGENVVL 174
NR + + R ++G L+ DQ NL+L ++ ER+ +Q + G++I+RG+NV +
Sbjct: 10 NRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAV 69
Query: 175 MGE 177
+GE
Sbjct: 70 IGE 72
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 116 NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQ-YGDIPRGIFIIRGENVVL 174
NR + + R ++G L+ DQ NL+L ++ ER+ +Q + G++I+RG+NV +
Sbjct: 10 NRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAV 69
Query: 175 MGE 177
+GE
Sbjct: 70 IGE 72
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 116 NRQQGLYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQ-YGDIPRGIFIIRGENVVL 174
NR + + R ++G L+ DQ NL+L ++ ER+ +Q + G++I+RG+NV +
Sbjct: 10 NRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAV 69
Query: 175 MGE 177
+GE
Sbjct: 70 IGE 72
>POMBASE|SPCC1840.10 [details] [associations]
symbol:lsm8 "U6 snRNP-associated protein Lsm8
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] PomBase:SPCC1840.10
INTERPRO:IPR001163 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0006364 GO:GO:0030532 GO:GO:0045292 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PIR:T41178 RefSeq:NP_588509.1
ProteinModelPortal:O74483 IntAct:O74483 STRING:O74483
EnsemblFungi:SPCC1840.10.1 GeneID:2539322 KEGG:spo:SPCC1840.10
eggNOG:NOG235625 HOGENOM:HOG000223549 KO:K12627 OMA:NHTVSII
OrthoDB:EOG48H0D6 NextBio:20800487 Uniprot:O74483
Length = 94
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERI-HVGNQYGDIPRGIFIIRGENVVLMG 176
N R ++G L+ D NL+L + ERI + IP G++++RGENV ++G
Sbjct: 16 NDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVG 69
>GENEDB_PFALCIPARUM|MAL8P1.9 [details] [associations]
symbol:MAL8P1.9 "u6 snRNA-associated sm-like
protein, putative" species:5833 "Plasmodium falciparum" [GO:0017070
"U6 snRNA binding" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] INTERPRO:IPR001163
GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070
GO:GO:0005732 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
N R G L+ DQ N++L ERI+ + I G++IIRG+ V L+GE
Sbjct: 19 NDSRIFTGKLKGFDQTTNIILGNCHERIYKESME-KISLGVYIIRGDTVTLIGE 71
>UNIPROTKB|C0H4Y9 [details] [associations]
symbol:MAL8P1.9 "U6 snRNA-associated Sm-like protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=ISS] [GO:0017070 "U6
snRNA binding" evidence=ISS] INTERPRO:IPR001163 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0017070 GO:GO:0005732
EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223549 KO:K12627 RefSeq:XP_002808886.1
ProteinModelPortal:C0H4Y9 EnsemblProtists:MAL8P1.9:mRNA
GeneID:2655440 KEGG:pfa:MAL8P1.9 EuPathDB:PlasmoDB:PF3D7_0829300
ProtClustDB:CLSZ2734129 Uniprot:C0H4Y9
Length = 95
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGE 177
N R G L+ DQ N++L ERI+ + I G++IIRG+ V L+GE
Sbjct: 19 NDSRIFTGKLKGFDQTTNIILGNCHERIYKESME-KISLGVYIIRGDTVTLIGE 71
>TAIR|locus:2061446 [details] [associations]
symbol:SNRNP-G "AT2G23930" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AC005170 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 EMBL:BT002035 EMBL:BT006498 EMBL:AY088256
IPI:IPI00541782 PIR:E84630 RefSeq:NP_179971.1 UniGene:At.27766
ProteinModelPortal:O82221 SMR:O82221 STRING:O82221 PRIDE:O82221
EnsemblPlants:AT2G23930.1 GeneID:816925 KEGG:ath:AT2G23930
GeneFarm:4625 TAIR:At2g23930 HOGENOM:HOG000223546 InParanoid:O82221
KO:K11099 OMA:DLFLNVV PhylomeDB:O82221 ProtClustDB:CLSN2683015
Genevestigator:O82221 GermOnline:AT2G23930 Uniprot:O82221
Length = 80
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVV 173
N R + G LR DQF NLV+ T+E ++ GN DI G+ +IRG ++V
Sbjct: 23 NANRMVTGTLRGFDQFMNLVVDNTVE-VN-GNDKTDI--GMVVIRGNSIV 68
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVV 173
N R ++G LR DQF NLV+ T+E ++ G+ DI G+ +IRG ++V
Sbjct: 23 NANRMVVGTLRGFDQFMNLVVDNTVE-VN-GDDKTDI--GMVVIRGNSIV 68
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 175
N RT+ G LR D F N+ L T+E + +Y +I G+ IIRG +++LM
Sbjct: 24 NGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKY-EI--GMVIIRGNSILLM 72
>GENEDB_PFALCIPARUM|MAL8P1.48 [details] [associations]
symbol:MAL8P1.48 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844507 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223546 KO:K11099
OMA:DLFLNVV HSSP:O29885 RefSeq:XP_001349302.1
ProteinModelPortal:Q8IB57 EnsemblProtists:MAL8P1.48:mRNA
GeneID:2655346 KEGG:pfa:MAL8P1.48 EuPathDB:PlasmoDB:PF3D7_0822300
ProtClustDB:CLSZ2432380 Uniprot:Q8IB57
Length = 83
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 22/52 (42%), Positives = 30/52 (57%)
Query: 121 LYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENV 172
+Y N R ++G LR D F NLVL T+E I Q DI G+ +IRG ++
Sbjct: 24 IYLNGNRQVVGILRGYDTFMNLVLDNTME-IKKDEQI-DI--GVVVIRGNSI 71
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.142 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 213 107 0.00091 102 3 11 22 0.44 30
29 0.40 32
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 514 (55 KB)
Total size of DFA: 102 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.75u 0.11s 8.86t Elapsed: 00:00:03
Total cpu time: 8.76u 0.11s 8.87t Elapsed: 00:00:03
Start: Thu Aug 15 17:08:49 2013 End: Thu Aug 15 17:08:52 2013