RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5557
(213 letters)
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 64.7 bits (158), Expect = 2e-12
Identities = 7/103 (6%), Positives = 27/103 (26%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ + Q K + + E + + + + + + E +
Sbjct: 908 YLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTER 967
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
K +Q + + + + + +K + +
Sbjct: 968 KDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHHH 1010
Score = 62.8 bits (153), Expect = 9e-12
Identities = 11/99 (11%), Positives = 24/99 (24%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K + Q K + + E + + + Q E +
Sbjct: 900 NWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYN 959
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
E ++K +Q + + K + Q
Sbjct: 960 GVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 998
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form
35-stranded beta-sheet I heptamer, structural genomics;
1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB:
1lnx_A*
Length = 81
Score = 58.5 bits (142), Expect = 6e-12
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
+ G LRS DQ NL+L E I GN Y RG ++RGENV+ + V
Sbjct: 32 HEIRGILRSFDQHVNLLLEDAEEIID-GNVY---KRGTMVVRGENVLFISPV 79
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 62.4 bits (152), Expect = 1e-11
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 14 RIGKRKKKKKEEENKKK---QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQK 70
+ + KK ENK +K E+ K+ K +K E E +K + E+ +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRM 974
Query: 71 KEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKE-EKKNKKAEEQNRQQ 119
EEE ++E K +K+ + Q +KK E+ K + + Q
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024
Score = 58.6 bits (142), Expect = 2e-10
Identities = 22/115 (19%), Positives = 48/115 (41%), Gaps = 4/115 (3%)
Query: 17 KRKKKKKEEENKKKQKKK--EEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+R K+E + K + + KK E K + ++K +++ K+ K EK E
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEIT 957
Query: 75 KDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTL 129
E +K + E+ + +EE K + ++ + ++ +K+T+
Sbjct: 958 --YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTI 1010
Score = 57.8 bits (140), Expect = 4e-10
Identities = 20/111 (18%), Positives = 49/111 (44%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K K E+ N + E ++ + + ++ + E++ + + +E+ K +E
Sbjct: 942 KEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKR 127
+ + EKK ++ K K + E+ + KE+ K E++ + ++ K
Sbjct: 1002 QTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE 1052
Score = 57.4 bits (139), Expect = 6e-10
Identities = 19/135 (14%), Positives = 56/135 (41%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+RK ++ +E K +K + E ++ + + + + ++E K + +E+
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEI 993
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSV 136
K ++ + + EKK ++ K K + E+ ++ E+ + R + + +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEI 1053
Query: 137 DQFANLVLHKTIERI 151
+ L + +++
Sbjct: 1054 TETMEKKLVEETKQL 1068
Score = 57.0 bits (138), Expect = 7e-10
Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 7/109 (6%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK-----EKKKEEKKQKK 71
K K + + E KK E K + + K ++ ++ + EK E +K +
Sbjct: 908 KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRS 967
Query: 72 EEEKDKKKEEKKQKKKEEKKQKKKEEKKQKK--KKEEKKNKKAEEQNRQ 118
+ E+ + EE+ + ++E K +K + + + K EE +
Sbjct: 968 DVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADK 1016
Score = 55.1 bits (133), Expect = 3e-09
Identities = 16/94 (17%), Positives = 46/94 (48%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ ++E +K+ + + ++K EE K K + E+ + +++ K +KEE
Sbjct: 985 RVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
+ ++ K+ + +K+ +E K+ + +++ +
Sbjct: 1045 RIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 54.7 bits (132), Expect = 4e-09
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 8/110 (7%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK----EKKKEEKKQKKE 72
R + + + + K+E KK K + + E+ +K E K + ++K +
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID 938
Query: 73 EEKDKKKEEKKQKKKEEKKQKKKEEKKQKK----KKEEKKNKKAEEQNRQ 118
E+ + K ++ E + EK + + E++ K A +
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLS 988
Score = 54.7 bits (132), Expect = 4e-09
Identities = 17/106 (16%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+++ K N+ ++E K +K+ + Q +K+ EE +K + + E+ + +E+
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
Query: 77 ---KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+KEE ++ ++ K+ + +K+ ++ ++ ++ +
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079
Score = 51.6 bits (124), Expect = 4e-08
Identities = 16/120 (13%), Positives = 40/120 (33%), Gaps = 5/120 (4%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
I K + + + K Q K++ KK + E + ++ ++ E +
Sbjct: 870 IQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENK 929
Query: 75 KDKKK-----EEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTL 129
+ + + K+ K EK + + +K ++ + N+ +L
Sbjct: 930 IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989
Score = 51.3 bits (123), Expect = 6e-08
Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 3/106 (2%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE--- 73
K + +E ++ QK + + K + + K+E KK K E
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
E+ KK + K + ++K E+ K+ K EK N + +
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTET 962
Score = 51.3 bits (123), Expect = 7e-08
Identities = 17/105 (16%), Positives = 35/105 (33%), Gaps = 3/105 (2%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
R + + ++ K QK + + K + + K E K
Sbjct: 849 LRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKK 908
Query: 77 KKKEEK---KQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
K E + + KK + K + ++K ++ K+ K E+
Sbjct: 909 LKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Score = 50.9 bits (122), Expect = 8e-08
Identities = 15/109 (13%), Positives = 41/109 (37%), Gaps = 4/109 (3%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK- 75
+ K ++ + + + K Q + K E K+ K E + ++ ++
Sbjct: 864 EHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLH 923
Query: 76 ---DKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
+ K + ++K E+ K+ K +K + + + ++ + L
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERL 972
Score = 46.3 bits (110), Expect = 3e-06
Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEK-----KEEKEEKKEKKKEEKK 68
I K +K+ + + +KK ++ K K + E+ + ++ K EKEE + ++ K
Sbjct: 992 EIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051
Query: 69 QKKEEEKDKKKEEKKQKKKEEKKQKKKEE 97
+ E + K EE KQ + + ++ + +
Sbjct: 1052 EITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 43.2 bits (102), Expect = 3e-05
Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 1/111 (0%)
Query: 20 KKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKK 79
+ + K + ++ K QK + K + + K
Sbjct: 844 ALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAK 903
Query: 80 EEKKQKKKEEKK-QKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTL 129
E K+ K E + ++ K+ + K + +K +EQN++ + L
Sbjct: 904 RELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex,
U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis,
PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G
2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Length = 76
Score = 53.1 bits (128), Expect = 4e-10
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
R + G LR D F NLV+ + +E G Q G+ +IRG +++++ +
Sbjct: 25 RHVQGILRGFDPFMNLVIDECVEMATSGQQ---NNIGMVVIRGNSIIMLEAL 73
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP,
splicing, core snRNP domain, systemic lupus eryth SLE,
RNA binding protein; HET: CIT; 2.00A {Homo sapiens}
SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Length = 91
Score = 52.5 bits (126), Expect = 1e-09
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVVLM 175
R IG ++ D+ NL+L E + + G+ ++RGEN+V M
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 80
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding
protein, SM protein, ring, HOMO octamer, mRNA
processing; 2.50A {Saccharomyces cerevisiae}
Length = 96
Score = 52.4 bits (126), Expect = 1e-09
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYG----DIPRGIFIIRGENVVLMGEV 178
RTL+G L++ D N+VL +E I+ N + + IRG+ V L+
Sbjct: 31 RTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTP 86
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM
fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus
solfataricus} SCOP: b.38.1.1
Length = 81
Score = 47.3 bits (113), Expect = 9e-08
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 7/54 (12%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVG--NQYGDIPRGIFIIRGENVVLMGEV 178
+ + G LRS DQ NLVL + E G + G I +IRG+NV+L+ +
Sbjct: 30 KEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTI-----VIRGDNVILISPL 78
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 51.0 bits (121), Expect = 9e-08
Identities = 19/84 (22%), Positives = 42/84 (50%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ ++ +E +K + K K+ KKEK +EEKK++ +E++K+++ +K
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQ 100
K+ ++ ++ + K K K
Sbjct: 857 IKETKENDEEFYKNKYSSKPYKVD 880
Score = 47.5 bits (112), Expect = 1e-06
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 40 KKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKK 99
+ EE K+ EK + + + +K ++EK +EEKK++ +E++K+++ +K
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKG 856
Query: 100 QKKKKEEKKNKKAEEQNRQQGLYPNQKRTL 129
K+ KE + + + + N R L
Sbjct: 857 IKETKENDEEFYKNKYSSKPYKVDNMTRIL 886
Score = 34.0 bits (77), Expect = 0.032
Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE---- 74
KKK+ EE+ K+++ K+ K+ K+ +++ K + + + + +Q +
Sbjct: 839 KKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKD 898
Query: 75 ------------------KDKKKEEKKQKKKEEKKQKKKEEK 98
+D++ +E + ++ K
Sbjct: 899 DRFVPVRKFKGNNGVVVLRDREPKEPVALIETVRQMKDVNAP 940
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_C
Length = 113
Score = 47.6 bits (113), Expect = 1e-07
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGD----IPRGIFIIRGENVVLMGEV 178
R + G L+ DQ NLVL E++ G+ ++RG +VL+ +
Sbjct: 44 RQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPM 99
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 50.2 bits (120), Expect = 1e-07
Identities = 19/104 (18%), Positives = 51/104 (49%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
+ +++EE +++ Q +K++ +Q+ + ++Q ++E+ ++ + EK + K KK E+
Sbjct: 934 ARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDIL 993
Query: 78 KKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
E++ K +E+K ++ E++ K +
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Score = 49.8 bits (119), Expect = 2e-07
Identities = 17/105 (16%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ + + K++ ++ + + + EE++++ ++ + EK++ +++ + ++Q +EEE
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAA 970
Query: 77 KKKEEKKQKKKEEKKQKKKEE---KKQKKKKEEKKNKKAEEQNRQ 118
++K + ++ + K +K +++ + + K K+ K EE+
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Score = 48.7 bits (116), Expect = 4e-07
Identities = 19/102 (18%), Positives = 50/102 (49%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
+ KK+E E + + ++++++ ++ Q +K+K +++ E++ EE++ +++
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQK 973
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
+ +K + KK E E++ K KE K ++
Sbjct: 974 LQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSD 1015
Score = 48.7 bits (116), Expect = 5e-07
Identities = 16/103 (15%), Positives = 56/103 (54%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
KK++ EE + + + EE++++ ++ + +KKK +++ + +++ ++EE ++K + +
Sbjct: 919 AAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+ K +K +++ + + K K+++ + + ++
Sbjct: 979 VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Score = 48.7 bits (116), Expect = 5e-07
Identities = 26/124 (20%), Positives = 68/124 (54%), Gaps = 3/124 (2%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKE---EKKEKKKEEKKQKKEEE 74
++ K+++++ + + K+ E+K + EEK +++ + E E E +E + +K+E E
Sbjct: 867 QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926
Query: 75 KDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLR 134
+ + E + +++EE+ Q+ + EKK+ +++ ++ EE+ + +K T G ++
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 135 SVDQ 138
++
Sbjct: 987 KMED 990
Score = 48.3 bits (115), Expect = 6e-07
Identities = 18/103 (17%), Positives = 50/103 (48%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K+K +++ + +++ +++E +QK + EK + K+ +++ + + K KE +
Sbjct: 950 KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+++ E+++K K K K K E ++ +++
Sbjct: 1010 EERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEE 1052
Score = 48.3 bits (115), Expect = 6e-07
Identities = 22/101 (21%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKE-EKKEKKKEEKKQKKEEEK 75
+ + ++ + E KK Q++ + +++ +EE+ ++K + E+ + K KK E+ E++
Sbjct: 940 EERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQN 999
Query: 76 DKKKEEKKQKKKEEKK-QKKKEEKKQKKKKEEKKNKKAEEQ 115
+K +E+K ++ E+++K K K K E
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Score = 48.3 bits (115), Expect = 7e-07
Identities = 18/106 (16%), Positives = 57/106 (53%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
R+ +K++ +E ++ + + +EE+++ ++ + ++KK +++ E++ +++E +QK +
Sbjct: 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQL 976
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
EK + K+ + + + + K K++K ++ N +
Sbjct: 977 EKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Score = 47.9 bits (114), Expect = 9e-07
Identities = 22/109 (20%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKE----KKEEKEEKKEKKKEEKKQKKE 72
K++ ++ E + + +++EE+ Q+ + EKK+ +++ +++ +EE+ ++K + ++
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Query: 73 EEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
+ K KK E+ +++ + KE K +++ + AEE+ + + L
Sbjct: 982 DGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Score = 47.9 bits (114), Expect = 9e-07
Identities = 17/104 (16%), Positives = 59/104 (56%), Gaps = 2/104 (1%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
++K + EE Q+K + + + E ++ + + +++E ++ + E + ++EEE+
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 77 KKKEEKKQKKKEE--KKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
++ + +K+K +++ +++ EE++ ++K + + A+ + ++
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Score = 45.6 bits (108), Expect = 5e-06
Identities = 22/105 (20%), Positives = 51/105 (48%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
++EE+ K K K + + E + + KKE+K +E +K K+K E + E+
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQI 1076
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
+ + + + K + +K++E + + E++ ++K + + L
Sbjct: 1077 AELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Score = 44.8 bits (106), Expect = 1e-05
Identities = 19/102 (18%), Positives = 56/102 (54%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ + K +E + K++++K E + K+ E+K + E+K +EK + + E + +E
Sbjct: 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVR 917
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
++++ ++ + + + EE++++ ++ + + KK ++Q
Sbjct: 918 LAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Score = 44.4 bits (105), Expect = 1e-05
Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 4/108 (3%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQK-KKEKKEEKEEKKEKKKEEKKQKKEE 73
K + +K + K K+ + + + + K K +K +E + EE+++ K
Sbjct: 971 RQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNL 1030
Query: 74 EKDKKKEEKKQ---KKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
K K K E + + +K++K ++E ++ K+K E ++ EQ +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078
Score = 44.1 bits (104), Expect = 2e-05
Identities = 17/106 (16%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
++K +E + + + + ++ + KK+E +E E + + +EE+++ ++ + +K
Sbjct: 891 CEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950
Query: 78 KKEEKK----QKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
KK +++ +++ EE++ +++ + +K + K K ++ +
Sbjct: 951 KKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Score = 43.7 bits (103), Expect = 2e-05
Identities = 22/111 (19%), Positives = 61/111 (54%), Gaps = 3/111 (2%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
R + + K EE + K+++++ + + K+ E+K + +++ ++K + + E + EE
Sbjct: 854 RQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEE 913
Query: 74 EKD---KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
+ KK+E ++ E + + ++EE++ ++ + EKK + + + ++ L
Sbjct: 914 MRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964
Score = 42.5 bits (100), Expect = 5e-05
Identities = 19/105 (18%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ ++K + E K ++ + + Q K KE ++ +E+ + EEE+
Sbjct: 968 EAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKE-RKLLEERVSDLTTNLAEEEEK 1026
Query: 77 KKKEEKKQKKKEEKKQ---KKKEEKKQKKKKEEKKNKKAEEQNRQ 118
K K + K E + +++++ +++ EK +K E ++
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Score = 42.5 bits (100), Expect = 6e-05
Identities = 25/109 (22%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK---EKKKEEKKQK 70
GK KK + + + Q K K++K EE+ E+EEK K K + +
Sbjct: 981 ADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESM 1040
Query: 71 KEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
E + + K+E+K +++ EK ++K E + ++ + + + + Q
Sbjct: 1041 ISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQ 1089
Score = 41.7 bits (98), Expect = 1e-04
Identities = 27/121 (22%), Positives = 52/121 (42%), Gaps = 5/121 (4%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEK-KEEKEEKKEKKKEEKKQKKE 72
+ K K++K E + ++++K + K K K + E + + K+E+K ++E
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 73 EEKDKKKEEKKQK----KKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRT 128
EK K+K E + + E + + E K Q KKEE+ + N +
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 129 L 129
+
Sbjct: 1118 I 1118
Score = 41.0 bits (96), Expect = 2e-04
Identities = 18/102 (17%), Positives = 61/102 (59%), Gaps = 2/102 (1%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
K ++EEE + K ++ + K+++++ + + K+ +++ + +EK ++K + E E +
Sbjct: 851 KVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAE 910
Query: 79 KEEKKQK--KKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
EE + + K+++ ++ E + + ++EE+++++ + + ++
Sbjct: 911 AEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKK 952
Score = 41.0 bits (96), Expect = 2e-04
Identities = 15/110 (13%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
+I + + + E + + +K++E + + E + +K +K + E + ++ E
Sbjct: 1075 QIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLES 1134
Query: 74 EKDKKKEEKKQKKKEEKK----QKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
EK + + +KQK+ ++ + + E+ +++ + + +
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 40.6 bits (95), Expect = 2e-04
Identities = 20/106 (18%), Positives = 50/106 (47%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
R+ K +K ++E E K++ + E ++ + Q + + + + KKE++ + + E+
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
E +K K+ ++ E +E + +K K +K + ++
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEE 1152
Score = 39.8 bits (93), Expect = 4e-04
Identities = 20/111 (18%), Positives = 52/111 (46%), Gaps = 9/111 (8%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKK-----EEKKQKK 71
+ E++N K K+++ +++ + +E+++ K K K K E + +
Sbjct: 989 EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRL 1048
Query: 72 EEEKDKKKEEKKQKKKEEKKQK----KKEEKKQKKKKEEKKNKKAEEQNRQ 118
++E+ ++E +K K+K E + + E + + + + + K EE+ +
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQA 1099
Score = 39.4 bits (92), Expect = 5e-04
Identities = 17/101 (16%), Positives = 49/101 (48%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ K K E + + + +++++ ++E +K K+K + E + ++ + + + + + +
Sbjct: 1031 TKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQL 1090
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
KKEE+ Q + + ++ KK E ++ ++ Q
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131
Score = 39.0 bits (91), Expect = 7e-04
Identities = 18/101 (17%), Positives = 45/101 (44%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
++ K+K E E+ ++ E + + E K Q K+++E + + E ++ +K
Sbjct: 1059 EKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKI 1118
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
++ E +E+ + +K K +K+K + + +
Sbjct: 1119 RELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTE 1159
Score = 38.3 bits (89), Expect = 0.002
Identities = 21/103 (20%), Positives = 48/103 (46%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
++ K + +NK + E + + KKEEK +++ EK + K E + E+ + + +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIA 1084
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+ K + +K++E + + E + +K K + E +
Sbjct: 1085 ELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISD 1127
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/104 (15%), Positives = 54/104 (51%), Gaps = 5/104 (4%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK-----KKEEKKQK 85
K ++++ + ++++ ++ +++++K E + K+ E+K + EEK+ + E +
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 86 KKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTL 129
+ EE + + +K++ ++ + + EE+ + +K+ +
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKM 953
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.3 bits (109), Expect = 1e-06
Identities = 15/73 (20%), Positives = 38/73 (52%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
+ +E + +K E+++K+ ++ + + E++ EK +K EE ++++ E+ +K K
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 90 KKQKKKEEKKQKK 102
+ K +Q
Sbjct: 138 NRIADKAFYQQPD 150
Score = 41.7 bits (97), Expect = 5e-05
Identities = 15/74 (20%), Positives = 40/74 (54%), Gaps = 7/74 (9%)
Query: 50 KEKKEEKEEKKEKKKEEKK--QKKEEEKDKKKEEKKQKKKEEKKQ--KKKEEKKQKKKKE 105
+E E ++ ++E++K Q+ + ++E ++K K++ ++ +++ E+ +K K
Sbjct: 78 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137
Query: 106 EKKNKKAEEQNRQQ 119
N+ A++ QQ
Sbjct: 138 ---NRIADKAFYQQ 148
Score = 32.4 bits (73), Expect = 0.067
Identities = 10/61 (16%), Positives = 32/61 (52%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
R +RK+ ++ + K +++ +K KK E+ +++ ++ EK + + ++ ++ +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Query: 74 E 74
Sbjct: 151 A 151
Score = 26.3 bits (57), Expect = 6.7
Identities = 7/57 (12%), Positives = 27/57 (47%)
Query: 2 KISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEE 58
+ + A S + + ++K +++ ++ +++ E+ +K K + K ++ +
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_B
Length = 75
Score = 41.9 bits (99), Expect = 6e-06
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
G L +D + NL L +T E ++ G + G IRG NV+ + +
Sbjct: 25 VDYKGILSCLDGYMNLALERTEEYVN-GKKTNVY--GDAFIRGNNVLYVSAL 73
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 45.3 bits (107), Expect = 7e-06
Identities = 18/92 (19%), Positives = 45/92 (48%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+K ++ + ++ +K ++ + ++ + K+K+ +E + + + KE QK + D +
Sbjct: 1945 QKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLE 2004
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
K E +EE +Q + + K K++E
Sbjct: 2005 KAEPTGPLREEVEQLENAANELKLKQDEIVAT 2036
Score = 39.1 bits (91), Expect = 8e-04
Identities = 15/116 (12%), Positives = 44/116 (37%), Gaps = 17/116 (14%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+ + + ++ E K+K ++ + + + ++ +K K EK E +++ ++ E
Sbjct: 1961 LKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLE 2020
Query: 75 KDKKKEEKKQKKKE-----------------EKKQKKKEEKKQKKKKEEKKNKKAE 113
+ + KQ + ++ E+ K + K + K ++
Sbjct: 2021 NAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSI 2076
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 44.5 bits (105), Expect = 9e-06
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ EE KKK++KK++ K +++ KE +E + + + KE ++D
Sbjct: 25 EGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDED 84
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKK 103
+ + KK+KKK++K+ K
Sbjct: 85 DEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 43.4 bits (102), Expect = 3e-05
Identities = 21/98 (21%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 9 GAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEK-----KEEKEEKKEKK 63
G + P + EE KK+++K++K + +Q+ ++ E + +
Sbjct: 16 GDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSA 75
Query: 64 KEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQK 101
E+K++ +++E + KK++KK+KK+ K Q
Sbjct: 76 LEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQT 113
Score = 43.0 bits (101), Expect = 3e-05
Identities = 14/89 (15%), Positives = 42/89 (47%)
Query: 20 KKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKK 79
+++ ++ KK+ +K+KK + +++ +++ + + ++ E ++
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERD 82
Query: 80 EEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
E+ + + K++KK+KKK+ K
Sbjct: 83 EDDEDGDGDGDGATGKKKKKKKKKRGPKV 111
Score = 42.2 bits (99), Expect = 7e-05
Identities = 15/98 (15%), Positives = 43/98 (43%)
Query: 16 GKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
G + +++++ ++ KK+ +K+KK + E++ K+ + +
Sbjct: 11 GSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQ 70
Query: 76 DKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAE 113
++ + +++ E+ + + KK++KK KK
Sbjct: 71 LERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 31.8 bits (72), Expect = 0.13
Identities = 10/78 (12%), Positives = 30/78 (38%)
Query: 39 QKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEK 98
++ + + E+ E+ KK+ K KK + ++E ++
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 99 KQKKKKEEKKNKKAEEQN 116
+ ++ E+ + +E++
Sbjct: 65 DEVARQLERSALEDKERD 82
Score = 29.1 bits (65), Expect = 0.97
Identities = 10/70 (14%), Positives = 26/70 (37%)
Query: 1 MKISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK 60
+ G P + ++ +++++ + E+ +K++KK
Sbjct: 44 KSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKK 103
Query: 61 EKKKEEKKQK 70
+KK+ K Q
Sbjct: 104 KKKRGPKVQT 113
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding
protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP:
b.38.1.1 PDB: 1i5l_A*
Length = 77
Score = 40.0 bits (94), Expect = 3e-05
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIH--VGNQYGDIPRGIFIIRGENVVLM 175
R G L D NLVL E + V + G + +IRG+ VV +
Sbjct: 25 REFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSV-----VIRGDTVVFV 70
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 42.8 bits (100), Expect = 3e-05
Identities = 24/111 (21%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 2 KISIAPKGAISPRIGKRKKKKKEEENKKK---QKKKEEKKQKKKEEKKQKKKEKKEEKEE 58
S+ + +KKEEE ++ + K++E + K+ E++ +K ++ ++ +
Sbjct: 317 PFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQ 376
Query: 59 KKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKN 109
++KK E+KK+ ++E + K+ K + + + + + K+ +EKKN
Sbjct: 377 DEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427
Score = 41.3 bits (96), Expect = 1e-04
Identities = 28/115 (24%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+ K+ + K +E + K+ E + ++K+EE + ++ +EK+ + +E + +
Sbjct: 305 EMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKEL 364
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKN----KKAEEQNRQQGLYPNQKRTL 129
E+ + KK + +KKK E K+K +E K A E + QG +TL
Sbjct: 365 HEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTL 419
Score = 38.6 bits (89), Expect = 0.001
Identities = 24/121 (19%), Positives = 59/121 (48%), Gaps = 8/121 (6%)
Query: 1 MKISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQK-----KKEEKKQKKKEKKEE 55
M + + + + K+ E + QKK+EE +Q K++E + K+ EK+
Sbjct: 306 MGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELH 365
Query: 56 KEEKKEKKKEEKKQKKEEEKDKKKEEKK---QKKKEEKKQKKKEEKKQKKKKEEKKNKKA 112
++ + KK + ++KK E+K K +++ +++K + + + + + K++K+
Sbjct: 366 EKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEK 425
Query: 113 E 113
+
Sbjct: 426 K 426
Score = 32.4 bits (73), Expect = 0.096
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 26 ENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
E + + K +E + K+ + + +KKE++ + ++ +EK+ + +E +++
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 86 KKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
E+ + KK + +KKK E K K +++
Sbjct: 364 LHEKFDRLKKLHQDEKKK-LEDKKKSLDDE 392
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein;
1.70A {Methanothermobacterthermautotrophicus} SCOP:
b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Length = 83
Score = 39.2 bits (92), Expect = 6e-05
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIH--VGNQYGDIPRGIFIIRGENVVLM 175
R G L+S D NLVL+ E V + G + +IRG+N+V +
Sbjct: 36 REFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTV-----LIRGDNIVYI 81
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA
decay, LSM proteins, RNA binding protein; 2.70A
{Schizosaccharomyces pombe}
Length = 93
Score = 39.4 bits (92), Expect = 7e-05
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR----------GIFIIRGENVVLM 175
R L G L + D+ N+VL E + + + + +RG++V+L+
Sbjct: 30 RELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F;
heptamer, translation; 2.80A {Saccharomyces cerevisiae}
SCOP: b.38.1.1 PDB: 1n9s_A
Length = 93
Score = 39.4 bits (92), Expect = 8e-05
Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIH--VGNQYGDIPRGIFIIRGENVVLMGEV 178
G L S D + NL L++ E + G+I IR NV+ + E+
Sbjct: 43 TEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEI-----FIRCNNVLYIREL 91
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A
{Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Length = 75
Score = 38.0 bits (89), Expect = 1e-04
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERI--HVGNQYGDIPRGIFIIRGENVVLM 175
G L D N+VL V +YG I +IRG+NV+ +
Sbjct: 25 FEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI-----VIRGDNVLAI 70
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex,
U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis,
PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F
2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Length = 86
Score = 38.2 bits (89), Expect = 2e-04
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
GYL SVD + N+ L T E I G G + G +IR NV+ + V
Sbjct: 27 MEYKGYLVSVDGYMNMQLANTEEYID-GALSGHL--GEVLIRCNNVLYIRGV 75
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 40.3 bits (95), Expect = 2e-04
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 55 EKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQ 100
K E E+ EE++ KEE++D E ++++EEKK K K+ +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 39.1 bits (92), Expect = 5e-04
Identities = 13/47 (27%), Positives = 29/47 (61%)
Query: 50 KEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
K E EE E+++ K++K++ + + EE++++KK + K+ +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 39.1 bits (92), Expect = 5e-04
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 46 KQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQ 92
K + +E EE++ K+E++ E ++++EEKK K K+ +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 37.6 bits (88), Expect = 0.001
Identities = 14/52 (26%), Positives = 28/52 (53%)
Query: 23 KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+ ++ +EE+ K+++E + +EE+EEKK K K+ +K + E
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 36.8 bits (86), Expect = 0.003
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 62 KKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
K E ++ EE++ KEEK+ E ++++EEKK K KK EK E N
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269
Score = 36.8 bits (86), Expect = 0.003
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 42 KEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
+ + ++ +EE+ K+EK+ + + EEE+++KK + K+ +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 35.6 bits (83), Expect = 0.006
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 44 EKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
K + +E EE+E KE+K++ + EE++++K+ K +K ++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 35.6 bits (83), Expect = 0.006
Identities = 9/47 (19%), Positives = 27/47 (57%)
Query: 38 KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQ 84
K + ++ ++E+ ++E++ + ++++EE+K K K+ +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 35.6 bits (83), Expect = 0.006
Identities = 15/50 (30%), Positives = 29/50 (58%)
Query: 47 QKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
K E EE E++E KEEK+ +E +++EE+K+ K ++ ++ +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 34.9 bits (81), Expect = 0.010
Identities = 9/49 (18%), Positives = 29/49 (59%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K + +E ++++ +++++ + + EE++E+KK + K+ ++ D
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 34.9 bits (81), Expect = 0.011
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 39 QKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
K E ++ +E++ KEEK++ E +++EEEK K ++ ++ +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 34.1 bits (79), Expect = 0.020
Identities = 9/46 (19%), Positives = 27/46 (58%)
Query: 36 EKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
K + +E ++++ K+E+++ E EE++++K+ + K ++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 33.0 bits (76), Expect = 0.045
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
K E ++ +EE+ K++++ + E E+++EEKK K ++ +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 32.2 bits (74), Expect = 0.100
Identities = 7/47 (14%), Positives = 28/47 (59%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE 65
K + E ++++ +++++ +++ ++E++E+K + K+ +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 31.8 bits (73), Expect = 0.13
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEE 66
K + EE ++++ KEEK+ E ++++E+K+ K +K EK +
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 31.0 bits (71), Expect = 0.23
Identities = 10/47 (21%), Positives = 27/47 (57%)
Query: 20 KKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEE 66
K E + ++++ K++K+ + + +E++EEK+ K +K ++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 40.0 bits (93), Expect = 2e-04
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIE-RIHVGNQYGDIPR------GIFIIRGENVV 173
R IG ++ D+ NL+L E R R G+ ++RGEN+V
Sbjct: 25 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLV 78
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA
binding protein, unknown F; 1.95A {Archaeoglobus
fulgidus} SCOP: b.38.1.1
Length = 77
Score = 37.3 bits (87), Expect = 3e-04
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERIHVG--NQYGDIPRGIFIIRGENVVLM 175
++ L+G L VD + NL L +E G+I ++RG NVVL+
Sbjct: 24 GEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEI-----VLRGNNVVLI 72
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 39.0 bits (90), Expect = 6e-04
Identities = 19/110 (17%), Positives = 56/110 (50%)
Query: 1 MKISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK 60
K ++ +R++ + + + + ++ + + K++ +K K E + ++ ++
Sbjct: 307 KNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQ 366
Query: 61 EKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
KK E + K+ EEK ++ E++K + +++ +++ + +K +KK K
Sbjct: 367 MKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 36.7 bits (84), Expect = 0.004
Identities = 23/115 (20%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 2 KISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKE 61
K++ + K + K ++++++ K KK E + ++ E K +++ +K
Sbjct: 294 KLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKL 353
Query: 62 KKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
K E + Q++ E+ KK E + K+ EEK+++ ++EK + ++ ++ +
Sbjct: 354 KDSEAELQRRHEQM-KKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRT 407
Score = 32.9 bits (74), Expect = 0.066
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 26 ENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
EN + +K K + + K + ++E+++ K KK E + ++ E K K
Sbjct: 288 ENYRSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVK 347
Query: 86 KKEEKKQKKKEE----KKQKKKKEEKKNKKAEEQNRQ 118
+K +K + + E +Q KK E ++K+ EE+ RQ
Sbjct: 348 EKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQ 384
Score = 30.2 bits (67), Expect = 0.56
Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Query: 26 ENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
K + + + + E++ + K KK E + ++ E K K+K +K +
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 86 KKEE----KKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
+ E +Q KK + Q K+ EEK+ + +E+
Sbjct: 356 SEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKAN 391
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 38.4 bits (90), Expect = 0.001
Identities = 14/66 (21%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQ--KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
+E K + +E +K +K+ K+ + KE+ ++ +K++ +KKE + + + +
Sbjct: 39 YKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEAD 98
Query: 82 KKQKKK 87
K + K
Sbjct: 99 KNLRSK 104
Score = 33.4 bits (77), Expect = 0.048
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 17 KRKKKKKEEENKKKQKKKEEK----KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
+ K + + + K+ +K + K KE+ K EK++ EKKE ++E + +
Sbjct: 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEA--EAD 98
Query: 73 EEKDKK 78
+ K
Sbjct: 99 KNLRSK 104
Score = 31.8 bits (73), Expect = 0.16
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 10 AISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEK 56
++ IGKR K K++ ++ +K+K ++K+ EK+ + + K
Sbjct: 58 SVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 37.8 bits (88), Expect = 0.001
Identities = 14/90 (15%), Positives = 37/90 (41%)
Query: 27 NKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKK 86
+ +++ E+ + E ++ ++E + EE+ E+ +E + +K ++
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 87 KEEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
K Q + E K + + A+ +N
Sbjct: 62 AAAKAQIAELEAKLSEMEHRYLRLYADFEN 91
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 38.1 bits (89), Expect = 0.001
Identities = 9/46 (19%), Positives = 20/46 (43%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
++ K E+ ++K ++ E ++ K KKK + +K
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 33.8 bits (78), Expect = 0.039
Identities = 8/46 (17%), Positives = 18/46 (39%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEK 67
K K E+ ++K + + K+ K ++K + +K
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 33.4 bits (77), Expect = 0.046
Identities = 8/46 (17%), Positives = 21/46 (45%)
Query: 53 KEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEK 98
+K + K ++ K++ ++ + ++ K KKK + +K
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 31.1 bits (71), Expect = 0.23
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEE 55
K E +K + E K+ K K++ K KK
Sbjct: 736 VKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 31.1 bits (71), Expect = 0.29
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEK 56
K K E K+K + E KQ K ++K + K+
Sbjct: 733 KGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 31.1 bits (71), Expect = 0.29
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 62 KKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEK 107
+K + ++ KE+ + + ++ + KK+ K KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 30.7 bits (70), Expect = 0.33
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 40 KKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
+K K E +EK ++ E K+ K K K K KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGK---NKKKSKHSKKHHHHH 772
Score = 29.2 bits (66), Expect = 1.2
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 16 GKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKE 54
G K + + K + + ++ + KK+ K KK
Sbjct: 734 GDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 37.2 bits (85), Expect = 0.002
Identities = 6/77 (7%), Positives = 41/77 (53%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
Q + ++ + + +++++++ +E + + ++E ++K +++ ++ + + ++ ++
Sbjct: 90 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN 149
Query: 90 KKQKKKEEKKQKKKKEE 106
K + +K ++ +
Sbjct: 150 KINNRIADKAFYQQPDA 166
Score = 36.8 bits (84), Expect = 0.002
Identities = 13/71 (18%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE-EKKQKKKEEKKQKKKKEE 106
+ ++ E + +E++++ ++ K ++E +++ KK+ E+ +++ E+ +K K
Sbjct: 94 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 153
Query: 107 KKNKKAEEQNR 117
+ KA Q
Sbjct: 154 RIADKAFYQQP 164
Score = 35.7 bits (81), Expect = 0.006
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 20 KKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
+K +EE+ K+ Q+ K ++E +++ KK+ +E + + E+ ++ K + +K
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
Score = 35.3 bits (80), Expect = 0.008
Identities = 17/75 (22%), Positives = 36/75 (48%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
+ + + +K E+++K+ +E K ++E EK +K EE Q++ E+ +K K
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Query: 82 KKQKKKEEKKQKKKE 96
+ K +Q +
Sbjct: 153 NRIADKAFYQQPDAD 167
Score = 34.9 bits (79), Expect = 0.010
Identities = 11/79 (13%), Positives = 36/79 (45%)
Query: 3 ISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEK 62
I+ A + P ++ ++++ + ++ + +Q+ +E+ K+ +E + + E+ EK
Sbjct: 89 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 148
Query: 63 KKEEKKQKKEEEKDKKKEE 81
K + + + +
Sbjct: 149 NKINNRIADKAFYQQPDAD 167
Score = 34.5 bits (78), Expect = 0.013
Identities = 15/80 (18%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 51 EKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
+ +E + +K E+++K+ +E D + +Q+ +E+ K+ +E +++ ++ EK
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK--N 149
Query: 111 KAEEQNRQQGLYPNQKRTLI 130
K + + Y +I
Sbjct: 150 KINNRIADKAFYQQPDADII 169
Score = 34.5 bits (78), Expect = 0.013
Identities = 8/77 (10%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
+ +E + +K E+++K+ ++ + + ++E +++ K++ ++ + + +Q +K +
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVM--EQEWREKAKKDLEEWNQRQSEQVEKNK 150
Query: 90 KKQKKKEEKKQKKKKEE 106
+ ++ ++ +
Sbjct: 151 INNRIADKAFYQQPDAD 167
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.002
Identities = 19/109 (17%), Positives = 35/109 (32%), Gaps = 34/109 (31%)
Query: 131 GYLRSVDQFANLV------LHKTIERIHVGN-QYGDI---PRGIFIIRGENVVL------ 174
+ S++ +V + + R +G YG I P + + +
Sbjct: 1775 DVM-SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833
Query: 175 ---MGEVVTVVN-------VKVIKGGDSGKKWLRGVKQGVDQLSLAKER 213
G +V +VN V GD LR + + L+ K +
Sbjct: 1834 GKRTGWLVEIVNYNVENQQY-VA-AGD-----LRALDTVTNVLNFIKLQ 1875
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc;
HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Length = 534
Score = 36.9 bits (86), Expect = 0.003
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 9/35 (25%)
Query: 152 HVGNQYGDIPRGIFIIRG---------ENVVLMGE 177
H QY D +G+FII+ E + + E
Sbjct: 107 HTDGQYEDGMKGLFIIKDDSFPYDYDEELSLSLSE 141
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 36.7 bits (85), Expect = 0.004
Identities = 22/71 (30%), Positives = 46/71 (64%), Gaps = 4/71 (5%)
Query: 51 EKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
K+ EKE +++++ EE+KD++K+++ KK + ++ ++EEKK K KK +++ +
Sbjct: 210 TKEVEKEVPIPEEEKK----DEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQ 265
Query: 111 KAEEQNRQQGL 121
+ EE N+ + L
Sbjct: 266 EIEELNKTKPL 276
>2c1i_A Peptidoglycan glcnac deacetylase; carbohydrate esterase,
peptidoglycan deacetylase, metalloenzyme, D275N mutant,
hydrolase; HET: MES; 1.35A {Streptococcus pneumoniae}
SCOP: c.6.2.3 d.341.1.1 PDB: 2c1g_A
Length = 431
Score = 36.1 bits (83), Expect = 0.005
Identities = 20/128 (15%), Positives = 48/128 (37%), Gaps = 9/128 (7%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE---------EKKQKKEEEKDKK 78
K Q+K E+K + +++K + + +KE ++ + E EK E +
Sbjct: 7 KIYQQKSFEQKIESLKKEKDDQLSEGNQKEHFRQGQAEVIAYYPLQGEKVISSVRELINQ 66
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQ 138
+ K + K+ E+++ K +N + + ++T +G + +
Sbjct: 67 DVKDKLESKDNLVFYYTEQEESGLKGVVNRNVTKQIYDLVAFKIEETEKTSLGKVHLTED 126
Query: 139 FANLVLHK 146
L +
Sbjct: 127 GQPFTLDQ 134
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 36.1 bits (82), Expect = 0.006
Identities = 18/95 (18%), Positives = 49/95 (51%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+R K + + + K + + K ++ E+K++ +E ++ EK E + + +++E
Sbjct: 492 ERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLA 551
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
K +E++Q KE +++ + K + + + K ++
Sbjct: 552 LKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRR 586
Score = 35.3 bits (80), Expect = 0.012
Identities = 15/103 (14%), Positives = 52/103 (50%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+K+KE E ++ + + + K E ++K ++ E+KE ++ ++ +K E ++
Sbjct: 481 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 540
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+ +E+++ + +++++ K+ +K+ + ++ +
Sbjct: 541 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583
Score = 34.2 bits (77), Expect = 0.029
Identities = 15/111 (13%), Positives = 57/111 (51%)
Query: 8 KGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEK 67
K +++ I + + E+E + + ++ + + + + + + K E+ E+KE+ +E
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527
Query: 68 KQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
++ E+ + + + ++++ K +E+++ K+ +K+++ + + +
Sbjct: 528 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 578
Score = 32.6 bits (73), Expect = 0.097
Identities = 14/104 (13%), Positives = 46/104 (44%)
Query: 16 GKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
K + ++ + K K+ + ++ +K+++ E + K E + K E ++
Sbjct: 452 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQR 511
Query: 76 DKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
++ +++++ ++ K+ EK + + + K ++ + Q
Sbjct: 512 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQ 555
Score = 32.2 bits (72), Expect = 0.13
Identities = 13/105 (12%), Positives = 48/105 (45%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K + + +KE++ + ++ + + + K E +++ ++ +++++ ++
Sbjct: 468 KESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 527
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
K+ +K + + K++E K +E+++ K Q + +
Sbjct: 528 LKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIM 572
Score = 30.7 bits (68), Expect = 0.38
Identities = 13/80 (16%), Positives = 42/80 (52%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
++K E+ ++K++ +E ++ E+ + + + +E+E K +E++Q +E K+
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 568
Query: 79 KEEKKQKKKEEKKQKKKEEK 98
K + ++ + + ++ +
Sbjct: 569 SRIMKNEIQDLQTKMRRRKA 588
Score = 29.9 bits (66), Expect = 0.58
Identities = 8/91 (8%), Positives = 45/91 (49%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+ K +++ ++ +++++ ++ K+ +K E + + K++E+ + ++ ++
Sbjct: 500 QASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQ 559
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKN 109
++ +K+ + + ++ + K ++ +
Sbjct: 560 LLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590
Score = 28.8 bits (63), Expect = 1.6
Identities = 15/103 (14%), Positives = 50/103 (48%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K + KK+ + ++ + E+ + + K+ + + ++ +K++E + ++ + +
Sbjct: 439 KLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAES 498
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+ K + + K ++ E+K++ ++ K+ + E +R Q
Sbjct: 499 AQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 541
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics,
structural genomics consortium, SGC, DNA binding
protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1
PDB: 3pgg_A
Length = 121
Score = 34.2 bits (78), Expect = 0.009
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR------------GIFIIRGENVVL 174
+ G LR D++ N+VL E ++ ++ G NV +
Sbjct: 49 KEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAM 108
Query: 175 M 175
+
Sbjct: 109 L 109
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 35.8 bits (82), Expect = 0.009
Identities = 12/115 (10%), Positives = 28/115 (24%), Gaps = 1/115 (0%)
Query: 1 MKISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK 60
+ + GK K + Q+ ++ K + K K +
Sbjct: 98 LSKIKKILECVCWNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAG 157
Query: 61 EKKKEEKKQKKEEEKDKKKEEKKQKKKEEKK-QKKKEEKKQKKKKEEKKNKKAEE 114
+ + +K+ + + K + EK+ E
Sbjct: 158 SDNFDLSNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKRLLSPLE 212
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal
transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A
3kso_A 3kss_A
Length = 1054
Score = 35.6 bits (83), Expect = 0.009
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 18/87 (20%)
Query: 130 IGYLRSVDQFANLVLHKTIER--IHVGN----QYGDIPR-GIFIIRGENVVLMGEVV--T 180
GYL+++D F ++VL + +++ + Q G R GI + GE GEV
Sbjct: 241 SGYLQTLDDFNHIVLKASENGVPVYLRDVAKVQIGPEMRRGIAELNGE-----GEVAGGV 295
Query: 181 VVNVKVIKGGDSGKKWLRGVKQGVDQL 207
V+ + G ++ ++ + VK ++ L
Sbjct: 296 VI---LRSGKNA-REVIAAVKDKLETL 318
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 35.6 bits (82), Expect = 0.010
Identities = 9/70 (12%), Positives = 23/70 (32%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ K ++ ++ Q+ +K E + + K + EK++ K
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQ 1915
Query: 77 KKKEEKKQKK 86
K ++
Sbjct: 1916 FSKTSQELIG 1925
Score = 35.2 bits (81), Expect = 0.016
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 3/73 (4%)
Query: 32 KKKEEKKQKKKEEKKQK---KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
K K + +E ++ EK E K + + + +KE K+
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQ 1915
Query: 89 EKKQKKKEEKKQK 101
K ++
Sbjct: 1916 FSKTSQELIGNCI 1928
Score = 32.5 bits (74), Expect = 0.10
Identities = 6/71 (8%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 46 KQKKKEKKEEKEEKKEKKKE--EKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
+ K ++ +E + EK + + ++ + + +K+ K+
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQ 1915
Query: 104 KEEKKNKKAEE 114
+ +
Sbjct: 1916 FSKTSQELIGN 1926
Score = 31.0 bits (70), Expect = 0.33
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 3/73 (4%)
Query: 39 QKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQ---KKEEEKDKKKEEKKQKKKEEKKQKKK 95
K K Q +E + EK E + + + +K+ K+
Sbjct: 1856 VKLVTAKYQDLQENQRFVNVGLEKLNESVLKVNELNKTLSISLVKSLTFEKERWLNTTKQ 1915
Query: 96 EEKKQKKKKEEKK 108
K ++
Sbjct: 1916 FSKTSQELIGNCI 1928
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 35.4 bits (82), Expect = 0.010
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 12/137 (8%)
Query: 2 KISI-APKGAISPRIGKRKKKKKEE--ENKKKQKKKEEKKQ---------KKKEEKKQKK 49
++I A + + +K+ E K + E++K + K E++
Sbjct: 514 DLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAP 573
Query: 50 KEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKN 109
EK + + + ++ +E D K + K +E + K+EEKK
Sbjct: 574 FASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQ 633
Query: 110 KKAEEQNRQQGLYPNQK 126
+Q Q +K
Sbjct: 634 AIRSKQEASQMAAMAEK 650
Score = 32.3 bits (74), Expect = 0.11
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 10/85 (11%)
Query: 36 EKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQ--- 92
+ + + K KK+ ++ + E+E + ++K + E++K
Sbjct: 498 IEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLE 557
Query: 93 -------KKKEEKKQKKKKEEKKNK 110
K EE+ + +K K
Sbjct: 558 EYIYTLRGKLEEEYAPFASDAEKTK 582
Score = 31.5 bits (72), Expect = 0.19
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 11/104 (10%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEK-----------KKE 65
+ + E K Q + ++ +E K K K E+ K+E
Sbjct: 570 EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEE 629
Query: 66 EKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKN 109
EKKQ +++ + +K +++ + E+K++KK E +
Sbjct: 630 EKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGDVD 673
Score = 30.7 bits (70), Expect = 0.37
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 15/105 (14%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK----------EKKKEEK 67
+K + K+ + +KE + + + E E++K K EE+
Sbjct: 511 KKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEE 570
Query: 68 KQKKEEEKDKKKEEKKQKK-----KEEKKQKKKEEKKQKKKKEEK 107
+ +K K + K +E K + K ++
Sbjct: 571 YAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELAS 615
Score = 29.6 bits (67), Expect = 0.73
Identities = 19/101 (18%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 2 KISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKE 61
S A K + + + ++ +E K K K ++ + + KEE+K+
Sbjct: 574 FASDAEKTKLQGML-NKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKK 632
Query: 62 KKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKK 102
+ K++ + +K ++K + EKK++KK+ +
Sbjct: 633 QAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGDVD 673
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 35.1 bits (81), Expect = 0.010
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 42 KEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQK 101
EE + + + + + EE + E +E K + ++ ++ +
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 33.2 bits (76), Expect = 0.041
Identities = 8/63 (12%), Positives = 20/63 (31%)
Query: 20 KKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKK 79
+ EE + Q + E ++ + E +E K E + + +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 80 EEK 82
+ +
Sbjct: 235 DAQ 237
Score = 30.9 bits (70), Expect = 0.20
Identities = 7/60 (11%), Positives = 20/60 (33%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
++ + E + + +E + + +E K E ++ E+ D +
Sbjct: 178 AEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNSDAQ 237
Score = 30.1 bits (68), Expect = 0.47
Identities = 2/66 (3%), Positives = 21/66 (31%)
Query: 5 IAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKK 64
+ P+ + + + + +E + + + ++ + + ++ +
Sbjct: 172 LPPRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSE 231
Query: 65 EEKKQK 70
+ +
Sbjct: 232 DNSDAQ 237
Score = 28.9 bits (65), Expect = 1.0
Identities = 6/63 (9%), Positives = 21/63 (33%)
Query: 56 KEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
+ +E + E + + + ++ + + EE K + ++ +
Sbjct: 175 RLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDNS 234
Query: 116 NRQ 118
+ Q
Sbjct: 235 DAQ 237
Score = 28.5 bits (64), Expect = 1.5
Identities = 5/64 (7%), Positives = 20/64 (31%)
Query: 13 PRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
PR+ + + + + + + ++ E + EE + + + +
Sbjct: 174 PRLTAEELEAEVQAAQVAGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSEDN 233
Query: 73 EEKD 76
+
Sbjct: 234 SDAQ 237
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 35.2 bits (82), Expect = 0.010
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKK 83
+ E ++ +K+ +E + ++ + K+ K EEKE + K ++ K E+ +++E +
Sbjct: 34 DREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93
Score = 28.3 bits (64), Expect = 2.1
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 47 QKKKEKKEEKEEKKEKKKEEKK---QKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKK 102
++ +E K+ +E + ++ + K + EEK+ K +E K+ ++ +K+ +
Sbjct: 35 REVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEAR 93
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 35.2 bits (80), Expect = 0.011
Identities = 22/85 (25%), Positives = 37/85 (43%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKK 87
++ ++ K K + +K E K E++ KK KK KK K K+ KK
Sbjct: 336 RRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKA 395
Query: 88 EEKKQKKKEEKKQKKKKEEKKNKKA 112
K+ ++K +KK ++ K A
Sbjct: 396 AATKKPAADKKPAEKKPTTEEKKPA 420
Score = 33.7 bits (76), Expect = 0.039
Identities = 18/118 (15%), Positives = 48/118 (40%)
Query: 10 AISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQ 69
A+ K ++ ++ K + + K ++ + + + + +K +
Sbjct: 301 ALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEA 360
Query: 70 KKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKR 127
K EE+ K+ +++K K+ KK ++ KK K A+++ ++ +K+
Sbjct: 361 KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 35.3 bits (81), Expect = 0.011
Identities = 14/88 (15%), Positives = 45/88 (51%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
+ K+E + +KK+E+++++ + + +E++E++++ +K K+ E+ + ++ +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSG 448
Query: 90 KKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
+ K K ++ +K + R
Sbjct: 449 EVFDKDLSKLKRNRKRITNQMTDSSRER 476
Score = 32.2 bits (73), Expect = 0.10
Identities = 19/88 (21%), Positives = 44/88 (50%)
Query: 21 KKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
+ ++EN+ +KKKEE++++ + E + K++ ++E K K ++ EE + + +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSG 448
Query: 81 EKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
E K + K+ +K Q ++
Sbjct: 449 EVFDKDLSKLKRNRKRITNQMTDSSRER 476
Score = 32.2 bits (73), Expect = 0.13
Identities = 17/87 (19%), Positives = 45/87 (51%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
+ K++ E +KKKEE++++ + + + KE+++ ++K K ++ EE + + +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSG 448
Query: 89 EKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
E K + K+ +K+ + + +
Sbjct: 449 EVFDKDLSKLKRNRKRITNQMTDSSRE 475
Score = 28.7 bits (64), Expect = 1.4
Identities = 12/81 (14%), Positives = 41/81 (50%)
Query: 38 KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEE 97
+ K+E + +KK+++EE+ + E + +E+++++ + + K+ ++ + ++ +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEESGEFDDLVSALRSG 448
Query: 98 KKQKKKKEEKKNKKAEEQNRQ 118
+ K + K + N+
Sbjct: 449 EVFDKDLSKLKRNRKRITNQM 469
Score = 26.8 bits (59), Expect = 6.3
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEK 56
+ +KKKEEE ++ + + + K+Q+++E K +K KE EE
Sbjct: 396 ENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
Score = 26.4 bits (58), Expect = 7.4
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 75 KDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+ K+E + +KK+E+++++ + Q K++ E++ K + + +
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSE 433
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG
MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3
b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A*
2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Length = 559
Score = 35.4 bits (82), Expect = 0.012
Identities = 8/35 (22%), Positives = 11/35 (31%), Gaps = 9/35 (25%)
Query: 152 HVGNQYGDIPRGIFIIRG---------ENVVLMGE 177
H QYG+ G I G V + +
Sbjct: 140 HFSAQYGNGVVGTIQINGPASLPYDIDLGVFPITD 174
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 35.1 bits (81), Expect = 0.012
Identities = 14/92 (15%), Positives = 33/92 (35%), Gaps = 5/92 (5%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQ-----KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+ E ++ + + + + K K KKKE + E E + + K
Sbjct: 40 DSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLK 99
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
+ K+ + + K + ++ K + E+
Sbjct: 100 VSQIKKVRLLIDEAILKCDAERIKLEAERFEN 131
Score = 31.2 bits (71), Expect = 0.26
Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 10 AISPRIGKRKKKKK--EEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEK 67
S IG++ KKK+ ++ + K + K+ + E +
Sbjct: 59 LCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEAILKCD 118
Query: 68 KQKKEEEKD 76
++ + E +
Sbjct: 119 AERIKLEAE 127
Score = 29.3 bits (66), Expect = 0.97
Identities = 9/84 (10%), Positives = 29/84 (34%)
Query: 35 EEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKK 94
+ + ++ + K K + EK K+++ +E + + K
Sbjct: 40 DSEWRRCRFRADNLNKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLK 99
Query: 95 KEEKKQKKKKEEKKNKKAEEQNRQ 118
+ K+ + ++ K + + +
Sbjct: 100 VSQIKKVRLLIDEAILKCDAERIK 123
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 34.9 bits (81), Expect = 0.014
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQ--KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
+ E + K K+ + ++ + + K+++K E +E K +E K+ E E + ++ +
Sbjct: 37 DTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELK 96
Query: 82 KKQKK 86
KK
Sbjct: 97 KKIDY 101
Score = 27.6 bits (62), Expect = 3.7
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 10 AISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEE 55
I+ IGKR+KK + + + ++ K+ + E + ++ K+K +
Sbjct: 56 KIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDY 101
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 34.9 bits (80), Expect = 0.014
Identities = 18/101 (17%), Positives = 38/101 (37%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
KK+KE KK K+ + K K + E + +K + KEE +
Sbjct: 623 NKKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICN 682
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
++ + + +KK+ ++ K + K + + +
Sbjct: 683 VDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGK 723
Score = 27.6 bits (61), Expect = 3.8
Identities = 15/103 (14%), Positives = 36/103 (34%)
Query: 8 KGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEK 67
+ +I + K++ E N + + K+KK K+ K + K + K +
Sbjct: 663 RKSIDNFHVLKNKEEYEICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKG 722
Query: 68 KQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
K+ ++ + +++E + + K K
Sbjct: 723 KECCDKLPKIADGDTSDDEEQEDEAPAPPKPKPPSTPNPCVRK 765
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation,
tRNA-binding, DNA-binding domain, four-helix
acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A
{Homo sapiens}
Length = 508
Score = 34.5 bits (79), Expect = 0.022
Identities = 13/108 (12%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 15 IGKRKKKK---KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKK 71
K K ++ + + E +++ + + + E+ EK++ E +++K
Sbjct: 104 FSKAMSNKWIRVDKSAADGPRVFRVVDSMEDEVQRRLQLVRGGQAEKLGEKERSELRKRK 163
Query: 72 EEEKDKKKEEKKQKKKEEKKQKKKEE---KKQKKKKEEKKNKKAEEQN 116
+ K K K+E + +++ + N
Sbjct: 164 LLAEVTLKTYWVSKGSAFSTSISKQETELSPEMISSGSWRDRPFKPYN 211
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 34.0 bits (77), Expect = 0.030
Identities = 15/89 (16%), Positives = 39/89 (43%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKK 87
+ K E+ + + KK++ + + + K K + K K + K + +KK ++
Sbjct: 460 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Query: 88 EEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
E++ K E + +++ ++ + N
Sbjct: 520 LEEQLMKLEVQATDREENKQIALGTSKLN 548
Score = 32.4 bits (73), Expect = 0.100
Identities = 15/88 (17%), Positives = 41/88 (46%)
Query: 23 KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEK 82
+ K +K + K +K+Q +++ K K + K + + K+ + KKK +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 83 KQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
+ +++ K + + ++++ K+ +K
Sbjct: 519 RLEEQLMKLEVQATDREENKQIALGTSK 546
Score = 32.0 bits (72), Expect = 0.14
Identities = 17/83 (20%), Positives = 38/83 (45%)
Query: 21 KKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
K E+ Q K + KK++ + ++ K K + K K K K+ + KK+ + +++
Sbjct: 464 KTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ 523
Query: 81 EKKQKKKEEKKQKKKEEKKQKKK 103
K + + +++ K+ K
Sbjct: 524 LMKLEVQATDREENKQIALGTSK 546
Score = 31.6 bits (71), Expect = 0.17
Identities = 15/83 (18%), Positives = 33/83 (39%)
Query: 16 GKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
K+++ + K K + + K +K + K+K ++ E++ K E + +EE K
Sbjct: 479 AKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENK 538
Query: 76 DKKKEEKKQKKKEEKKQKKKEEK 98
K + + +K
Sbjct: 539 QIALGTSKLNYLDPRITVAWCKK 561
Score = 31.3 bits (70), Expect = 0.21
Identities = 16/87 (18%), Positives = 36/87 (41%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+ + K ++ + +++ K K + + K KK + +KK ++ E++ K E
Sbjct: 470 MMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEV 529
Query: 75 KDKKKEEKKQKKKEEKKQKKKEEKKQK 101
+ +EE KQ K + +
Sbjct: 530 QATDREENKQIALGTSKLNYLDPRITV 556
Score = 27.0 bits (59), Expect = 5.5
Identities = 14/69 (20%), Positives = 35/69 (50%)
Query: 53 KEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKA 112
+ + + KKE+ + ++ K + D K + + KK + +KK ++ +++ + +
Sbjct: 474 QTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATD 533
Query: 113 EEQNRQQGL 121
E+N+Q L
Sbjct: 534 REENKQIAL 542
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and
PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A
{Schizosaccharomyces pombe} PDB: 3swn_A
Length = 94
Score = 31.7 bits (72), Expect = 0.034
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 121 LYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 175
+ +R G L D + N+VL E V ++ G + ++
Sbjct: 35 VIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSE--MLLNGNGMCML 87
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex,
U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis,
PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E
2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Length = 92
Score = 31.7 bits (72), Expect = 0.040
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 121 LYPNQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 175
LY + G + D++ NLVL E G +++G+N+ L+
Sbjct: 35 LYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK--SRKQLGRIMLKGDNITLL 87
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 33.5 bits (76), Expect = 0.042
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 37 KKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQ 92
KK + ++ ++K ++ E +K++ +D KK K +EE+
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWT 315
Score = 29.3 bits (65), Expect = 0.86
Identities = 10/59 (16%), Positives = 28/59 (47%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEE 106
KK E +E K+K ++ E + +++K + ++ KK + ++++ ++
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDD 318
Score = 29.3 bits (65), Expect = 0.89
Identities = 12/58 (20%), Positives = 26/58 (44%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
K + + EE KQK + KK++ E+ + +K K E+++ +++
Sbjct: 261 KYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDD 318
Score = 27.7 bits (61), Expect = 2.6
Identities = 11/56 (19%), Positives = 22/56 (39%)
Query: 45 KKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQ 100
KK + +E K++ + + KK++ + KK K +EE+
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWT 315
Score = 27.7 bits (61), Expect = 3.0
Identities = 9/59 (15%), Positives = 27/59 (45%)
Query: 56 KEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
K+ + + +E K++ ++ E +++K + ++ KK K E++ ++
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDDD 318
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 33.3 bits (77), Expect = 0.044
Identities = 12/60 (20%), Positives = 32/60 (53%)
Query: 54 EEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAE 113
+E ++K E +K+K + ++ E+ + E++ +++ E +K KE++ + +E
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 32.9 bits (76), Expect = 0.056
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 21 KKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
K+ E++ + +K+K+ Q ++ EK ++ ++ E+ E K+ K+K+ +E +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTV 456
Query: 81 E 81
+
Sbjct: 457 D 457
Score = 32.2 bits (74), Expect = 0.11
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 32 KKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
K+ E+K + ++EK + ++ EK ++ +++ E+ K KE++ Q+ E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 31.4 bits (72), Expect = 0.20
Identities = 12/57 (21%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 51 EKKEEKEEKKEKKKEE--KKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKE 105
++ E+K ++ K+K+ + Q+ E+ + E++ +++ E +K +EK+ ++ E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 30.6 bits (70), Expect = 0.34
Identities = 12/60 (20%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 43 EEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKK 102
K+ +++ E ++EK + ++ +K +D E++ +++ E+ K+ KE++ Q+
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRD--TEQRLREQVEDTKKSWKEKQGQEN 451
Score = 30.6 bits (70), Expect = 0.37
Identities = 11/65 (16%), Positives = 35/65 (53%)
Query: 25 EENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQ 84
K+ ++K +E +++K + ++ EK + +++ +E+ + K+ K+K+ +E +
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Query: 85 KKKEE 89
++
Sbjct: 454 VTVDD 458
Score = 29.9 bits (68), Expect = 0.55
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 40 KKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
K+ E+K + +++K+ + +E +K + E+ ++ E+ K+ KE++ Q+ E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 29.9 bits (68), Expect = 0.62
Identities = 12/57 (21%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 43 EEKKQKKKEKKEEKEE-KKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEK 98
+E +QK E ++EK+ + ++ E+ ++ E+ +++ + KK ++KQ ++ +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 28.3 bits (64), Expect = 1.8
Identities = 14/64 (21%), Positives = 34/64 (53%)
Query: 26 ENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
+ +E +QK E +K+K + ++ EK ++ +++ +E+ +D KK K+++
Sbjct: 388 RSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQ 447
Query: 86 KKEE 89
+E
Sbjct: 448 GQEN 451
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair,
endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens}
SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Length = 318
Score = 33.1 bits (76), Expect = 0.046
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
KR KK E+ + + + E K+ K KK K+ E ++ ++ +
Sbjct: 3 KRGKKGAVAEDGDELRTEPEAKKSKTAAKKNDKEAAGEGPALYEDPPDQKTSPSGKP 59
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 33.2 bits (77), Expect = 0.052
Identities = 13/65 (20%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQ--KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
++ ++ K+ E + ++ + K+ K K + ++ E + + KE K++ E++ +K E
Sbjct: 36 DKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVE 95
Query: 82 KKQKK 86
++ K
Sbjct: 96 EELKN 100
Score = 26.3 bits (59), Expect = 7.6
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 10 AISPRIGKRKKKKKEEENKKKQ--KKKEEKKQKKKEEKKQKKK 50
+S IGK K++ K+ + + + KEE + ++E +K +++
Sbjct: 55 KLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET:
NAG BMA MAN; 1.67A {Botrytis aclada}
Length = 580
Score = 33.2 bits (76), Expect = 0.057
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 8/34 (23%)
Query: 152 HVGNQYGDIPRGIFIIRG--------ENVVLMGE 177
H QYGD G II G + V+ +
Sbjct: 170 HFSLQYGDGLFGPLIINGPATADYDEDVGVIFLQ 203
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 33.1 bits (76), Expect = 0.060
Identities = 12/81 (14%), Positives = 35/81 (43%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K K E +++ E K K + + + +E + + + + ++ + +
Sbjct: 191 KLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAE 250
Query: 77 KKKEEKKQKKKEEKKQKKKEE 97
+KK + K ++K+++ E+
Sbjct: 251 EKKILNQFLKIKKKRKELFEK 271
Score = 29.7 bits (67), Expect = 0.74
Identities = 19/95 (20%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKK-QKKEE 73
G + KK+ EE K+K +K + + + +++ E K K E + + + +E
Sbjct: 173 SGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDE 232
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
+ + + + ++ + ++KK + K KK+ K+
Sbjct: 233 AEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKE 267
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 32.9 bits (74), Expect = 0.062
Identities = 14/64 (21%), Positives = 24/64 (37%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEK 107
K K E +K + +E + K++ K K+ K KK + +K K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 108 KNKK 111
+K
Sbjct: 310 VDKS 313
Score = 31.7 bits (71), Expect = 0.14
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 5/89 (5%)
Query: 25 EENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQ 84
+E K + + K+ K E + K+ K K+ + KK +
Sbjct: 243 KELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTA 302
Query: 85 KKKEEKKQKKKEEKK-----QKKKKEEKK 108
+K K K K K K+ K
Sbjct: 303 AQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 28.6 bits (63), Expect = 1.4
Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 3/97 (3%)
Query: 9 GAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKK 68
G IS I K + K + K+ K + + +E K K +
Sbjct: 235 GLISDYIPKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTG 294
Query: 69 QKKEEEKDKKKEEKKQKKKEEKKQK---KKEEKKQKK 102
+K + +K K K K + KK K
Sbjct: 295 KKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGK 331
Score = 26.3 bits (57), Expect = 7.5
Identities = 13/76 (17%), Positives = 24/76 (31%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
K+ + K K E +K + ++ E K+ + K KK K
Sbjct: 242 PKELSDDLSKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMT 301
Query: 89 EKKQKKKEEKKQKKKK 104
++ + K K
Sbjct: 302 AAQKALAKVDKSGMKS 317
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 32.6 bits (74), Expect = 0.065
Identities = 15/110 (13%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 25 EENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQK-KEEEKDKKKEEKK 83
K+++ + K+K+ EE+ +E + + E++++ EE +
Sbjct: 100 SLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQ 159
Query: 84 QKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYL 133
+ + + ++ + + K ++ Q +KR + YL
Sbjct: 160 RNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDIPDYL 209
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 32.3 bits (74), Expect = 0.089
Identities = 19/102 (18%), Positives = 41/102 (40%), Gaps = 2/102 (1%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKK-EEKKQKKEEEKDKKKEEK 82
+++ ++ Q E K+ K +KK KE + + + ++ E K E+
Sbjct: 43 DKKWRRTQFLTEASKKLINICSKAVGAKKKA-KEADGDTSEIPPQVKEAYENGTLKGEQV 101
Query: 83 KQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPN 124
+Q + KQ K+ Q ++ + EE+++ N
Sbjct: 102 EQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGN 143
Score = 31.9 bits (73), Expect = 0.14
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Query: 10 AISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQ 69
S +G +KK K E + + + K+ + + ++ ++ + K+ K+ Q
Sbjct: 62 ICSKAVGAKKKAK--EADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQ 119
Query: 70 KKEEEKDKKKEEKKQKKK 87
K+ ++ E+++ K
Sbjct: 120 VAGLAKEAQQLEEERDKL 137
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2
Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB:
3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A*
2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A*
4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Length = 499
Score = 32.3 bits (74), Expect = 0.11
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 14/40 (35%)
Query: 152 HVGNQYGDIPRGIFIIR--------------GENVVLMGE 177
H+ QY D RG F++ + V+ + +
Sbjct: 111 HLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDTVITLAD 150
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2
PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D*
2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D*
3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Length = 1524
Score = 32.4 bits (74), Expect = 0.11
Identities = 12/107 (11%), Positives = 36/107 (33%), Gaps = 5/107 (4%)
Query: 23 KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKE----KKKEEKKQKKEEEKDKK 78
+ + EK+Q +E+ ++ + K+E K+ ++ K +E
Sbjct: 135 LDPKGAILNGVPVEKRQLLTDEEYRELRYGKQETYPLPPGVDALVKDGEEVVKGQELAPG 194
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQ 125
+ + ++ + KK++ + ++ P +
Sbjct: 195 VVSRLDGVALYRFPRRVRVEYVKKERAGLR-LPLAAWVEKEAYKPGE 240
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 32.2 bits (73), Expect = 0.11
Identities = 13/93 (13%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEK-------- 82
Q K +E + +++ E + K K +++ KE ++ E + + E++
Sbjct: 96 QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155
Query: 83 KQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
K ++ + + ++E + E
Sbjct: 156 TSYNKILTEEDLQMRRLATALQKEIGERTHAET 188
Score = 29.5 bits (66), Expect = 0.89
Identities = 18/110 (16%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEK-----KQKK 71
+ +++ + K K KE+ ++ +E E E E++K+ K +
Sbjct: 103 EDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKIL 162
Query: 72 EEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
EE + + +KE ++ E K+ +++ K + + G+
Sbjct: 163 TEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDALKNAIEVERDGM 212
Score = 26.5 bits (58), Expect = 8.5
Identities = 13/77 (16%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 43 EEKKQKKKEK-KEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQK 101
E Q K ++ ++E+ + + K K K++ K+ ++ + + + +++
Sbjct: 92 ERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDIL 151
Query: 102 KKKEEKKNKKAEEQNRQ 118
K NK E++ Q
Sbjct: 152 NKAVTSYNKILTEEDLQ 168
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper
depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A
{Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB:
1a65_A*
Length = 503
Score = 32.3 bits (74), Expect = 0.11
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 14/40 (35%)
Query: 152 HVGNQYGDIPRGIFIIR--------------GENVVLMGE 177
H G QY D RG +I ++ + +
Sbjct: 111 HFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTIITLAD 150
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 32.2 bits (74), Expect = 0.11
Identities = 12/66 (18%), Positives = 33/66 (50%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEK 107
+ +E ++K E +K+K + ++ E+ + E++ +++ E +K KE++
Sbjct: 388 RSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQ 447
Query: 108 KNKKAE 113
+ +E
Sbjct: 448 GQENSE 453
Score = 29.5 bits (67), Expect = 0.79
Identities = 13/61 (21%), Positives = 33/61 (54%)
Query: 21 KKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
K+ E++ + +K+K+ Q ++ EK ++ ++ E+ E K+ K+K+ +E +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTV 456
Query: 81 E 81
+
Sbjct: 457 D 457
Score = 28.7 bits (65), Expect = 1.5
Identities = 12/66 (18%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 42 KEEKKQKKKEKKEEKEEKKEKKKEE--KKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKK 99
+ ++ E+K ++ K+K+ + Q+ E+ + E++ +++ E +K +EK+
Sbjct: 388 RSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQ 447
Query: 100 QKKKKE 105
++ E
Sbjct: 448 GQENSE 453
Score = 27.5 bits (62), Expect = 3.4
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 37 KKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
K+ E+K + +++K+ + +E +K + E+ ++ E+ K+ KE++ Q+ E
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 27.5 bits (62), Expect = 3.9
Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 19 KKKKKEEENKKKQKKKEEKKQK--KKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
K+ +++ + +K+K + Q+ K + ++ +E+ E+ K+ KE++ Q+ E
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 26.4 bits (59), Expect = 7.8
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
K+ E+K + ++EK + ++ EK ++ +++ E+ K KE++ Q+ E
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 26.4 bits (59), Expect = 9.6
Identities = 12/66 (18%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 34 KEEKKQKKKEEKKQKKKEKKEEKEE-KKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQ 92
+ +E +QK E ++EK+ + ++ E+ ++ E+ +++ + KK ++KQ
Sbjct: 388 RSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQ 447
Query: 93 KKKEEK 98
++ +
Sbjct: 448 GQENSE 453
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 31.8 bits (71), Expect = 0.13
Identities = 12/63 (19%), Positives = 31/63 (49%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+R + ++ K ++ + + + +KK + + + + + + +K E E+K Q + EKD
Sbjct: 323 ERLVDQMIDKTKVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKD 382
Query: 77 KKK 79
Sbjct: 383 ALD 385
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 32.1 bits (73), Expect = 0.13
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 59 KKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
K+ ++K + K+ K + + + + K K + E+ +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAE 684
Score = 31.7 bits (72), Expect = 0.16
Identities = 4/58 (6%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
K+ +++ + +++ K +E + + K + +++ + +
Sbjct: 632 GKQGGGT--QQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Score = 31.7 bits (72), Expect = 0.18
Identities = 5/56 (8%), Positives = 21/56 (37%)
Query: 16 GKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKK 71
GK+ +++ KK+ + + + + K + + +++ + +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAEFTR 687
Score = 31.0 bits (70), Expect = 0.29
Identities = 7/52 (13%), Positives = 19/52 (36%)
Query: 45 KKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
K+ ++K E +++ K + + E + K + ++ E
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAE 684
Score = 29.8 bits (67), Expect = 0.81
Identities = 8/52 (15%), Positives = 18/52 (34%)
Query: 37 KKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
K+ ++K + KK + E + E + K + ++ E
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAE 684
Score = 26.7 bits (59), Expect = 7.1
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 90 KKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRT 128
K+ ++K + KK+ K + +E + P +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHA 671
Score = 26.3 bits (58), Expect = 9.4
Identities = 5/38 (13%), Positives = 16/38 (42%)
Query: 82 KKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
K+ ++K + KK + + +E + + + +
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAH 670
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum
ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Length = 495
Score = 31.9 bits (73), Expect = 0.15
Identities = 7/40 (17%), Positives = 14/40 (35%), Gaps = 14/40 (35%)
Query: 152 HVGNQYGDIPRGIFIIRG--------------ENVVLMGE 177
H+ QY D RG F++ ++ + +
Sbjct: 112 HLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLAD 151
>3sqg_A Methyl coenzyme M reductase, alpha subunit; anaerobic methane
oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE
P6G; 2.10A {Uncultured archaeon}
Length = 579
Score = 31.8 bits (72), Expect = 0.17
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 1/81 (1%)
Query: 55 EKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
+ K K ++ E + ++ +K+E + K + +
Sbjct: 4 NDIQHNFLKAMSDKFAEKPESTATEFYTYGGIAQKGGMRKREFIAEASKIVDSRVNSTPA 63
Query: 115 QNRQQGLYPNQKRTLIGYLRS 135
N G+ P +R L+ Y+ +
Sbjct: 64 YNPDAGM-PQGQRYLMPYMMN 83
Score = 26.4 bits (58), Expect = 8.1
Identities = 8/53 (15%), Positives = 16/53 (30%), Gaps = 2/53 (3%)
Query: 41 KKEEKKQKK--KEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKK 91
+ K +K EK E + ++ +K+E + K
Sbjct: 4 NDIQHNFLKAMSDKFAEKPESTATEFYTYGGIAQKGGMRKREFIAEASKIVDS 56
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 31.4 bits (71), Expect = 0.18
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
Q KE +K+++ EEK ++ K KE+ E+++ +K+++++Q + + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 29.8 bits (67), Expect = 0.65
Identities = 9/51 (17%), Positives = 29/51 (56%)
Query: 41 KKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKK 91
+ K+ +K+ + EEK + + KE+ ++++ E++ K+++ + ++
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 29.5 bits (66), Expect = 0.78
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 67 KKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
+ KE +K ++ EEK ++ K K++ +KE ++++K+E+ + AE
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 29.1 bits (65), Expect = 1.2
Identities = 9/50 (18%), Positives = 30/50 (60%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKK 68
+ KE + +++ ++K + + KE+ ++++ EK++++E+ + E +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDE 426
Score = 28.7 bits (64), Expect = 1.4
Identities = 9/51 (17%), Positives = 27/51 (52%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEK 98
+ K+ +K + E+K K KE+ + ++ E+++++++ + +E
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 28.3 bits (63), Expect = 2.0
Identities = 9/53 (16%), Positives = 27/53 (50%)
Query: 37 KKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
+ K+ +K+++ +EK + KEK ++E+ +K+++ + + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETGV 429
Score = 27.9 bits (62), Expect = 3.0
Identities = 13/44 (29%), Positives = 28/44 (63%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEK 62
+K+++ EE ++ K +EK +K++ EK+QK+++ + E E
Sbjct: 384 QKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 31.3 bits (70), Expect = 0.18
Identities = 17/95 (17%), Positives = 33/95 (34%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K + E KK K K K++ K+ E K K++ K ++ K
Sbjct: 309 KVAGTTETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKT 368
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
KK + K ++ K +++ + +
Sbjct: 369 HKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQ 403
Score = 27.1 bits (59), Expect = 4.5
Identities = 11/66 (16%), Positives = 24/66 (36%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+ K + + K +K K KK + K E+ K ++++ + +E
Sbjct: 345 KKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQE 404
Query: 75 KDKKKE 80
+ E
Sbjct: 405 IKEGDE 410
Score = 26.3 bits (57), Expect = 9.0
Identities = 9/65 (13%), Positives = 26/65 (40%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+ ++ KK E K+Q + ++ K KK + + +E + +++ +
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Query: 75 KDKKK 79
++
Sbjct: 400 AQGQE 404
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 31.7 bits (73), Expect = 0.18
Identities = 12/79 (15%), Positives = 29/79 (36%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
K+ +K E + + E+ E K ++E +K + + +++ KE+
Sbjct: 229 VTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLKEK 288
Query: 90 KKQKKKEEKKQKKKKEEKK 108
+ E + K+
Sbjct: 289 FPEADPYEIIESFNVVAKE 307
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 31.3 bits (70), Expect = 0.19
Identities = 16/112 (14%), Positives = 50/112 (44%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+K +KE + + +++K + + + Q + ++ E + + E + K
Sbjct: 111 EKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSK 170
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLI 130
++E++++ +EE + K +E + + + N + ++ + + R L+
Sbjct: 171 QQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLV 222
Score = 27.9 bits (61), Expect = 2.5
Identities = 12/97 (12%), Positives = 47/97 (48%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
K++ K+ E +K +K+ +++ K++K+ + + ++ + + ++ E+ + +
Sbjct: 96 KRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQG 155
Query: 82 KKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
+ + ++++++++ E+ KA+E
Sbjct: 156 SPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEAL 192
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 30.9 bits (69), Expect = 0.23
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 7 PKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE 65
+PR ++KK+ + + KK + ++KKK++ + K K++ K E +
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 30.5 bits (68), Expect = 0.31
Identities = 10/60 (16%), Positives = 30/60 (50%)
Query: 25 EENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQ 84
+ + Q + ++K++ ++ + K+ K ++K+KK+ K + + ++ K E +
Sbjct: 55 GQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 30.5 bits (68), Expect = 0.35
Identities = 14/100 (14%), Positives = 39/100 (39%)
Query: 6 APKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE 65
AP PR ++ Q ++ + + + + ++KK+
Sbjct: 16 APTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQA 75
Query: 66 EKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKE 105
K+ K ++ ++++KKQ K + ++++ K + +
Sbjct: 76 PKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 30.5 bits (68), Expect = 0.36
Identities = 16/84 (19%), Positives = 38/84 (45%)
Query: 70 KKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTL 129
+ + + + +K++ ++ + KK + ++KKKK+ K K + Q L ++ +
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118
Query: 130 IGYLRSVDQFANLVLHKTIERIHV 153
V A + K ++ +HV
Sbjct: 119 KNEDGDVIGHALAMEGKVMKPLHV 142
Score = 28.6 bits (63), Expect = 1.3
Identities = 16/89 (17%), Positives = 39/89 (43%)
Query: 2 KISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKE 61
+ AP A + + ++ + + + + +QKK+ K+ + KK
Sbjct: 26 RRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKP 85
Query: 62 KKKEEKKQKKEEEKDKKKEEKKQKKKEEK 90
K +E+KK++ + K K++ K + ++
Sbjct: 86 KPQEKKKKQPAKTKPGKRQRMALKLEADR 114
Score = 28.6 bits (63), Expect = 1.4
Identities = 14/63 (22%), Positives = 29/63 (46%)
Query: 13 PRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
+ ++K++ K+ K K+ K Q+KK+++ K K K ++ K + K E
Sbjct: 62 NPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDVKNE 121
Query: 73 EEK 75
+
Sbjct: 122 DGD 124
Score = 28.2 bits (62), Expect = 1.9
Identities = 13/94 (13%), Positives = 37/94 (39%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
+++++ + Q ++ + + + +KK+ KQ K +
Sbjct: 24 RRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPK 83
Query: 90 KKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYP 123
K + ++++KKQ K + K ++ + L+
Sbjct: 84 KPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFD 117
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.4 bits (72), Expect = 0.23
Identities = 12/64 (18%), Positives = 33/64 (51%)
Query: 44 EKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
E++ KKEK + +E+ + + E + EE + E +++++ K ++ + + ++
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
Query: 104 KEEK 107
+ E
Sbjct: 476 EIEL 479
Score = 29.1 bits (66), Expect = 1.1
Identities = 17/101 (16%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 24 EEENKKKQKKKEEKK--QKKKEEKKQKKKEKKEEKEE-KKEKKKEEKKQKKEEEKDKKKE 80
E E KK+K + ++ + + E + +E + + E ++E++ K ++ + D+ +
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
Query: 81 EKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
E + +++ + E + + K E + + E+ R
Sbjct: 476 EIELAERQYDLNRAAELRYGELPKLEAEVEALSEKLRGARF 516
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 31.4 bits (72), Expect = 0.25
Identities = 9/55 (16%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 18 RKKKKKEEENKKKQKKKEEKK-------QKKKEEKKQKKKEKKEEKEEKKEKKKE 65
R++++K + ++ ++K +K +E + ++ + +E E+ E+ +E
Sbjct: 802 RRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIRE 856
Score = 26.8 bits (60), Expect = 6.4
Identities = 12/58 (20%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 24 EEENKKKQKKKEE-KKQKKKEEKK-------QKKKEKKEEKEEKKEKKKEEKKQKKEE 73
EE ++++K+ +E ++ ++K +K ++ E EE + K+ E+ ++ E
Sbjct: 799 EEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIRE 856
Score = 26.4 bits (59), Expect = 9.8
Identities = 9/54 (16%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 46 KQKKKEKKEEKEEKKEKKKEEKK------------QKKEEEKDKKKEEKKQKKK 87
+ +++++K KE ++ ++K + E E+ + KE +Q ++
Sbjct: 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAER 853
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 30.7 bits (70), Expect = 0.29
Identities = 8/48 (16%), Positives = 15/48 (31%)
Query: 59 KKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEE 106
E E+ + K EE K+ + +KK ++
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 29.5 bits (67), Expect = 0.70
Identities = 5/44 (11%), Positives = 13/44 (29%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE 65
E ++ K K E+ ++ +K ++
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEK 272
Score = 29.1 bits (66), Expect = 0.92
Identities = 7/48 (14%), Positives = 17/48 (35%)
Query: 49 KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
E +E + K+ + ++ + KK ++K K+
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 28.7 bits (65), Expect = 1.3
Identities = 11/49 (22%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 66 EKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
E +E D K+ K EE KK KK ++
Sbjct: 231 ENVYTEEVLADIAKDM---VNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 28.0 bits (63), Expect = 2.2
Identities = 6/46 (13%), Positives = 17/46 (36%)
Query: 36 EKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
E ++ K + + + ++ + KK +KK ++
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 26.0 bits (58), Expect = 8.4
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 45 KKQKKKEKKEEKEEKKEKKKEE--KKQKKEEEKDKKKEEKKQKKKEE 89
+ ++ + K+ + K EE D K+ + +KK +
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVK 275
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 30.8 bits (69), Expect = 0.31
Identities = 14/117 (11%), Positives = 33/117 (28%), Gaps = 11/117 (9%)
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEK-KQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGY 132
+ KE K + + + +K + QG ++
Sbjct: 6 HHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKG 65
Query: 133 LRSVDQ---------FANLVLHKTIERIHVGNQYGDIPRGI-FIIRGENVVLMGEVV 179
+ S + L+ + I + G IP+ + F+ + + + E
Sbjct: 66 INSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESA 122
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 30.7 bits (70), Expect = 0.33
Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 2/73 (2%)
Query: 49 KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
K E E + + K +K + K+KE+ + KKE + + +
Sbjct: 3 KAENYELYQVELGPGPSGDMAAKMSKKKAGR--GGGKRKEKLENMKKEMEINDHQLSVAE 60
Query: 109 NKKAEEQNRQQGL 121
++ + + +GL
Sbjct: 61 LEQKYQTSATKGL 73
Score = 29.9 bits (68), Expect = 0.71
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKK 53
+ K +KK K+KE+ + KKE +
Sbjct: 16 PGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEME 50
Score = 29.2 bits (66), Expect = 1.3
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 1 MKISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKE 51
++ + P + KKK K+K+K + KK+ + + + E
Sbjct: 10 YQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAE 60
Score = 28.8 bits (65), Expect = 1.5
Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 9/64 (14%)
Query: 15 IGKRKKK-----KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQ 69
+GK + + K KK+ + K K++ + KKE + + +
Sbjct: 1 MGKAENYELYQVELGPGPSGDMAAKMSKKKAGRG----GGKRKEKLENMKKEMEINDHQL 56
Query: 70 KKEE 73
E
Sbjct: 57 SVAE 60
Score = 28.4 bits (64), Expect = 2.3
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
K + + + + K K++ K+KE+ + K+E +
Sbjct: 3 KAENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIN 52
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 30.6 bits (69), Expect = 0.34
Identities = 14/99 (14%), Positives = 34/99 (34%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
K+ + E + +KK+ + K KKKE + + + +
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNY 248
Query: 78 KKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
K+ + ++K+ E + K + + K + +
Sbjct: 249 KETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPY 287
Score = 26.3 bits (58), Expect = 8.2
Identities = 17/79 (21%), Positives = 30/79 (37%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K K+K+ + + K+ K EKKE E K+K E E KD
Sbjct: 220 TEACKNYSNFILIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKD 279
Query: 77 KKKEEKKQKKKEEKKQKKK 95
+ + + + ++ + K
Sbjct: 280 ETRWKNPYETLDDTEVKNN 298
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme,
streptolydigin, antibiotic, transcription regulation;
HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1
a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F*
2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Length = 423
Score = 30.6 bits (69), Expect = 0.35
Identities = 15/100 (15%), Positives = 35/100 (35%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
IG+ EEE + +K +E + KK + + + + + +
Sbjct: 87 EIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPG 146
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAE 113
K+ + ++ ++ K KE K+ E + +
Sbjct: 147 LKETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQH 186
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 30.6 bits (69), Expect = 0.36
Identities = 12/87 (13%), Positives = 27/87 (31%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
+ + ++ K+K K KK + + K + KK + + K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 78 KKEEKKQKKKEEKKQKKKEEKKQKKKK 104
E+ + K+E + +
Sbjct: 254 NAEKVQTAGIVTPYDILKQELDEFNEV 280
Score = 26.8 bits (59), Expect = 6.4
Identities = 13/79 (16%), Positives = 26/79 (32%)
Query: 38 KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEE 97
+KK + K + EK + +++ + E + + K+ E
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIE 295
Query: 98 KKQKKKKEEKKNKKAEEQN 116
+E KKN + N
Sbjct: 296 LCVCSVEEAKKNTQEVVTN 314
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.5 bits (69), Expect = 0.39
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKK 64
Q KE +K+++ EEK ++ K KE+ E+++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 0.89
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 37 KKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKK 71
+ K+ +K+++ +EK + KEK ++E+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.9 bits (65), Expect = 1.1
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 52 KKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKK 86
+ KE +K ++ EEK ++ + K+K ++E+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.6 bits (64), Expect = 1.5
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKK 53
+ KE + +++ ++K + + KE+ ++++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.2 bits (63), Expect = 2.1
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 63 KKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKK 94
KE +K+++ EEK ++ + K+K ++E+ +K+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 28.2 bits (63), Expect = 2.3
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 67 KKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQK 101
+ KE +K ++ EEK ++ K K++ +KE +++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.4 bits (61), Expect = 3.5
Identities = 9/35 (25%), Positives = 22/35 (62%)
Query: 45 KKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKK 79
+ K+ +K + E+K ++ + K+K E+E+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.4 bits (61), Expect = 3.6
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 38 KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
Q KE +K+++ E+K + + ++K E+++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.4 bits (61), Expect = 4.1
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 41 KKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
+ K+ +K+ + EEK + + KE+ ++++ E++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.0 bits (60), Expect = 4.2
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEK 56
+ + +K+++ EEK ++ K K++ +KE+ E++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 26.6 bits (59), Expect = 5.9
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
+ K+ +K+++ +E+ ++ K ++K +K++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 26.6 bits (59), Expect = 6.7
Identities = 7/35 (20%), Positives = 22/35 (62%)
Query: 49 KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKK 83
+ KE ++ ++ ++K + + +E+ +K++ EK+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 30.2 bits (67), Expect = 0.42
Identities = 7/66 (10%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 35 EEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKK 94
E + ++ + +K + + K++ +K+ E + + +E + + + Q + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELR--RMQEMIARMQAQMQMQMQGGDGDG 354
Query: 95 KEEKKQ 100
Sbjct: 355 GALGHH 360
Score = 30.2 bits (67), Expect = 0.47
Identities = 5/53 (9%), Positives = 24/53 (45%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
+ K+ ++ + + +++ +KE + + ++ + + + Q + + D
Sbjct: 303 RLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 30.2 bits (67), Expect = 0.52
Identities = 10/72 (13%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEK 90
Q +E + E + ++ ++ K E ++ K++ +KE E ++ +E + + +
Sbjct: 285 QDLQEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAEL-RRMQEMIARMQAQM 343
Query: 91 KQKKKEEKKQKK 102
+ + +
Sbjct: 344 QMQMQGGDGDGG 355
Score = 29.8 bits (66), Expect = 0.55
Identities = 4/55 (7%), Positives = 22/55 (40%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
++ K+ + + +++ +KE + ++ +E + + + + +
Sbjct: 301 SERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 28.7 bits (63), Expect = 1.5
Identities = 7/58 (12%), Positives = 28/58 (48%)
Query: 26 ENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKK 83
EN + ++ K ++ + E+ + + ++E E ++ ++ + Q + + + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDG 354
Score = 27.5 bits (60), Expect = 3.3
Identities = 4/68 (5%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE-EKKQKKEEEKDKKKE 80
++ ++ + + E+ ++ + + + K + EK+ + + ++ + + + + +
Sbjct: 288 QEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQM 347
Query: 81 EKKQKKKE 88
+
Sbjct: 348 QGGDGDGG 355
Score = 27.1 bits (59), Expect = 5.1
Identities = 7/59 (11%), Positives = 25/59 (42%)
Query: 54 EEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKA 112
E ++ K+ K + ++ KD+ EK+ + + ++ + + + + + +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
Score = 26.0 bits (56), Expect = 10.0
Identities = 4/56 (7%), Positives = 21/56 (37%), Gaps = 3/56 (5%)
Query: 10 AISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE 65
+ K + + ++ +K E + ++ +E + + + + + + +
Sbjct: 303 RLKRGGRKVENEDMNKDQILLEK---EAELRRMQEMIARMQAQMQMQMQGGDGDGG 355
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 30.0 bits (67), Expect = 0.42
Identities = 22/97 (22%), Positives = 45/97 (46%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEK 90
+K +E K+ +K ++Q K KK ++E + + Q + K KE K E++
Sbjct: 94 RKLQELIKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQE 153
Query: 91 KQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKR 127
+ KK+ +++ +K K+KKA + + +
Sbjct: 154 RLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAK 190
Score = 28.5 bits (63), Expect = 1.3
Identities = 15/90 (16%), Positives = 40/90 (44%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
++ KK K+E + + + + ++ K+ K E+E K++ +++ +K
Sbjct: 110 QVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAA 169
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
K KK + + E+ K + +++ +
Sbjct: 170 VKSKKATDTYKLYVEKYALAKADFEQKMTE 199
Score = 27.7 bits (61), Expect = 2.9
Identities = 14/109 (12%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Query: 34 KEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQK 93
KE +K +++ K KK +++ + + + + +K K+ K ++E K++
Sbjct: 101 KEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQ--SITQALQKSKENYNAKCVEQERLKKE 158
Query: 94 KKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANL 142
+++ +K + K + + + + +F ++
Sbjct: 159 GATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDI 207
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.9 bits (67), Expect = 0.46
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEE 58
Q +KE+KKQ +EKKQ + E+++ +E+
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.1 bits (65), Expect = 0.92
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 48 KKKEKKEEKEEKKEKKKEEKK---QKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
+ K+ + KE + K + +KE+KKQ +EKKQ + E +K ++
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 27.6 bits (61), Expect = 2.6
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 59 KKEKKKEEKKQKKEEEKDKKK------EEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
+ K+ E K+ + + Q +KE+KKQ +EKKQ + + EK +
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 30.2 bits (67), Expect = 0.47
Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 3/112 (2%)
Query: 20 KKKKEEENKKKQKKKEEKKQKKKEE---KKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K + KK +K EK +K+E + +KK E K + K E K + QK E
Sbjct: 604 KSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFAL 663
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRT 128
KE + + Q K K++ K EK +K ++ ++ + N K
Sbjct: 664 INKEANRDARAIAYTQNLKGIKRELSDKLEKISKDLKDFSKSFDEFKNGKNK 715
Score = 28.7 bits (63), Expect = 1.7
Identities = 21/92 (22%), Positives = 39/92 (42%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
K + + K+ K+ K K + + E KK +K+ EK +K E
Sbjct: 568 KGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKRE 627
Query: 82 KKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAE 113
+K+ E+K + K K + + K + ++K E
Sbjct: 628 HLEKEVEKKLESKSGNKNKMEAKAQANSQKDE 659
Score = 26.4 bits (57), Expect = 9.6
Identities = 17/102 (16%), Positives = 41/102 (40%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
++ K K + + + +K QK EK K E EK+ E+K + K K+
Sbjct: 586 NKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKN 645
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
K + + + ++++ ++ + + + + R+
Sbjct: 646 KMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKRE 687
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase,
phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Length = 1354
Score = 30.6 bits (68), Expect = 0.48
Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 7/151 (4%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
I + K + +K + + +K+++ ++K E+ K ++ Q+ + E
Sbjct: 1151 IESNQLKSQLPLTFVNAQKTSPPEAGESADKQKEDQKKVRSALERIVKLADKVIQETDSE 1210
Query: 75 KDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLR 134
K + + + K KQK E +KK + L K +L
Sbjct: 1211 ALLSYYGLKNDTRADAAKIKTNMDKQKNTLIEALSKKGIAVAKLAVLDDCIKDSLAEINE 1270
Query: 135 S-------VDQFANLVLHKTIERIHVGNQYG 158
VD + + + + YG
Sbjct: 1271 LYTEIIKFVDANDSKAIQFALWHAYAHGHYG 1301
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 30.1 bits (67), Expect = 0.55
Identities = 11/100 (11%), Positives = 38/100 (38%), Gaps = 6/100 (6%)
Query: 23 KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEK 82
E+ K + E ++ ++ ++ + + + +E+ D +
Sbjct: 533 LHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDS 592
Query: 83 KQKKKEEKKQKKKEEKKQKKKKEE------KKNKKAEEQN 116
++ +EE+ +K+K +E K+++ +++
Sbjct: 593 DEEDSSNNADVSEEERSRKRKLDEKENLSAKRSRIEQKEE 632
Score = 27.0 bits (59), Expect = 5.9
Identities = 7/75 (9%), Positives = 26/75 (34%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+K ++ + + +++ + E+ EEE+ +K
Sbjct: 552 EKVGPKQAEDAAKSITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRK 611
Query: 79 KEEKKQKKKEEKKQK 93
++ +++ K+ +
Sbjct: 612 RKLDEKENLSAKRSR 626
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 30.1 bits (68), Expect = 0.58
Identities = 17/104 (16%), Positives = 35/104 (33%), Gaps = 9/104 (8%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKK---------EKKEEKEEKKEKKKE 65
I R K EE ++ + K+ E K E E + + K+
Sbjct: 44 INHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRL 103
Query: 66 EKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKN 109
+ K+ +D++ E+ + E +++ + EE
Sbjct: 104 DNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFHV 147
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 29.9 bits (68), Expect = 0.58
Identities = 5/74 (6%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKK 83
+E ++ +++ +++K+ + + ++ + ++ + + + ++ +K+
Sbjct: 76 WQELRQLREQIRSLEEEKEAVTEAVRALVV-NQDNSQVQQDPQYQSLRARGREIRKQLTL 134
Query: 84 QKKKEEKKQKKKEE 97
KE + +++
Sbjct: 135 LYPKEAQLEEQFYL 148
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 29.8 bits (66), Expect = 0.64
Identities = 16/88 (18%), Positives = 29/88 (32%)
Query: 72 EEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIG 131
E + K + + + KKE + + KKK++ + Q+ PN RT+
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYTAALAEAESKKKQDGYLSEPRSQSLNFKSEPNAIRTIDS 60
Query: 132 YLRSVDQFANLVLHKTIERIHVGNQYGD 159
+ Q L K+
Sbjct: 61 SVHQYGQQELDALVKSWGISPTNPDRKK 88
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 30.0 bits (68), Expect = 0.67
Identities = 5/41 (12%), Positives = 21/41 (51%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKK 64
+E+++++K + E +++ + + E++E+ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELR 768
Score = 26.6 bits (59), Expect = 8.0
Identities = 5/44 (11%), Positives = 20/44 (45%)
Query: 61 EKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKK 104
++ +E ++++K + ++E K E++++ +
Sbjct: 726 DRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 29.7 bits (66), Expect = 0.67
Identities = 14/81 (17%), Positives = 36/81 (44%)
Query: 35 EEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKK 94
E++ ++K +K + + + E+ +K+ + E+K+K+ + D +E ++ +
Sbjct: 14 EDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTN 73
Query: 95 KEEKKQKKKKEEKKNKKAEEQ 115
KE K K + +
Sbjct: 74 KEHKTTKMSNKSNEKSGNVLP 94
Score = 29.3 bits (65), Expect = 0.77
Identities = 14/79 (17%), Positives = 35/79 (44%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
K +K + + + EE K++ ++ EEK+++ K ++ ++ + K+ K
Sbjct: 20 KLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKEHKTT 79
Query: 89 EKKQKKKEEKKQKKKKEEK 107
+ K E+ K++
Sbjct: 80 KMSNKSNEKSGNVLPKDKP 98
Score = 28.6 bits (63), Expect = 1.3
Identities = 20/103 (19%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K +K K E + EE K++ ++ ++KKKE + ++ ++ + K+
Sbjct: 20 KLLQKAKAE----GVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKE 75
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
K + K E+ ++K K + K K ++ ++Q+
Sbjct: 76 HKTTKMSNKSNEKSGNVLPKDKPYKTLDDYLKLDKIKDLSKQE 118
Score = 28.2 bits (62), Expect = 2.0
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 44 EKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
E + K+K ++ K E E +E KK+ ++ ++KKKE K E +Q +
Sbjct: 14 EDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTN 73
Query: 104 KEEKKNKKAEEQNRQQG 120
KE K K + + N + G
Sbjct: 74 KEHKTTKMSNKSNEKSG 90
Score = 28.2 bits (62), Expect = 2.2
Identities = 16/83 (19%), Positives = 38/83 (45%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
+ ++K +K + + E ++ K++ ++ E+K+K+ + +E E+ + KE
Sbjct: 16 RYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKE 75
Query: 89 EKKQKKKEEKKQKKKKEEKKNKK 111
K K + +K K+K
Sbjct: 76 HKTTKMSNKSNEKSGNVLPKDKP 98
Score = 27.8 bits (61), Expect = 2.4
Identities = 16/81 (19%), Positives = 34/81 (41%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEK 90
+ KE+ QK K E + +E K+ ++ E+KK+E + + ++ + K
Sbjct: 15 DRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNK 74
Query: 91 KQKKKEEKKQKKKKEEKKNKK 111
+ K + + +K K
Sbjct: 75 EHKTTKMSNKSNEKSGNVLPK 95
Score = 27.0 bits (59), Expect = 4.2
Identities = 18/88 (20%), Positives = 34/88 (38%)
Query: 36 EKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKK 95
E + K+K +K K + + +E KK + +++KKE K E +Q +
Sbjct: 14 EDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTN 73
Query: 96 EEKKQKKKKEEKKNKKAEEQNRQQGLYP 123
+E K K + K + +
Sbjct: 74 KEHKTTKMSNKSNEKSGNVLPKDKPYKT 101
Score = 26.2 bits (57), Expect = 8.4
Identities = 14/85 (16%), Positives = 36/85 (42%)
Query: 26 ENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
E++ K+K ++ K + E ++ KK ++ EEKK++ + ++ E+
Sbjct: 14 EDRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTN 73
Query: 86 KKEEKKQKKKEEKKQKKKKEEKKNK 110
K+ + + + ++ K
Sbjct: 74 KEHKTTKMSNKSNEKSGNVLPKDKP 98
>3gjx_B Snurportin-1; transport, cytoplasm, nucleus, RNA-binding,
acetylation, GTP-binding, HOST-virus interaction,
nucleotide-binding, phosphoprotein; HET: GTP; 2.50A
{Homo sapiens} PDB: 3nby_B* 3nbz_B* 3nc0_B* 3gb8_B
2qna_B
Length = 365
Score = 29.8 bits (66), Expect = 0.68
Identities = 16/72 (22%), Positives = 34/72 (47%)
Query: 13 PRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
PR+ + K K E +++++ E ++ K+ + + E+ E ++E KK +E
Sbjct: 31 PRLSQYKSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEE 90
Query: 73 EEKDKKKEEKKQ 84
+ D K+ K
Sbjct: 91 MDIDTVKKLPKH 102
Score = 27.1 bits (59), Expect = 4.4
Identities = 12/66 (18%), Positives = 27/66 (40%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKK 87
K K E+ +++++ + QK K ++ + + + EEE K EE
Sbjct: 37 KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEEMDIDTV 96
Query: 88 EEKKQK 93
++ +
Sbjct: 97 KKLPKH 102
Score = 27.1 bits (59), Expect = 5.2
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDK-----KKEEKKQKKKEEKKQKKKEEKKQKK 102
K K E+ E++ + E +K K+ + + + + + +EE K+ +E
Sbjct: 37 KSKYSSLEQSERRRRLLELQKSKRLDYVNHARRLAEDDWTGMESEEENKKDDEEMDIDTV 96
Query: 103 KKEEKK 108
KK K
Sbjct: 97 KKLPKH 102
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 29.5 bits (66), Expect = 0.70
Identities = 10/85 (11%), Positives = 28/85 (32%)
Query: 24 EEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKK 83
+ ++ + ++ E ++E++ + ++ E ++K E +
Sbjct: 58 DPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAREKFAELRA 117
Query: 84 QKKKEEKKQKKKEEKKQKKKKEEKK 108
Q K K ++E K
Sbjct: 118 QYVVTRDTIKAKGRSHATAQEEILK 142
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 29.6 bits (66), Expect = 0.71
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEE 58
++E+K + KEEKK K+++ E E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 28.1 bits (62), Expect = 2.4
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 76 DKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
++E+K + KEEKK K+++ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 26.9 bits (59), Expect = 4.9
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 84 QKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
++E+K + KEEKK K+K++ + +
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 29.8 bits (67), Expect = 0.72
Identities = 11/97 (11%), Positives = 42/97 (43%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+KE+ +K+ + + E+ ++ + Q+ + E+ E++ + E + + +
Sbjct: 14 GFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVE 73
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
E+ + ++ + + + + + +E + E +
Sbjct: 74 VTEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIERE 110
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 28.9 bits (65), Expect = 0.82
Identities = 7/73 (9%), Positives = 32/73 (43%)
Query: 55 EKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
+E+K + + ++ ++ ++ + + + E+ + ++ + + E + ++ +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 115 QNRQQGLYPNQKR 127
R + N +R
Sbjct: 62 ILRVKAEMENLRR 74
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial
promoter opening, G-quartet, quadruplex, DNA binding;
2.10A {Thermus aquaticus} PDB: 3ugp_A 1ku2_A 3lev_A*
3les_A*
Length = 245
Score = 29.1 bits (65), Expect = 0.93
Identities = 18/99 (18%), Positives = 37/99 (37%)
Query: 15 IGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
IG+ EEE +K +E + KK + ++ + + + + QK
Sbjct: 16 IGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGL 75
Query: 75 KDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAE 113
K+K + ++ + K KE K+ E + +
Sbjct: 76 KEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQH 114
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 28.9 bits (65), Expect = 1.2
Identities = 2/69 (2%), Positives = 14/69 (20%)
Query: 45 KKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKK 104
++ ++ + ++K ++ + K +
Sbjct: 113 SIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQ 172
Query: 105 EEKKNKKAE 113
+
Sbjct: 173 LNYADMLKR 181
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 28.9 bits (64), Expect = 1.3
Identities = 13/58 (22%), Positives = 28/58 (48%)
Query: 33 KKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEK 90
+K+ K+ +++ + KK +++ KE+ + +K E +K Q +EEK
Sbjct: 395 QKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEEK 452
Score = 28.1 bits (62), Expect = 2.3
Identities = 11/78 (14%), Positives = 36/78 (46%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKK 87
+K + + K + + +KK K+ + +++ KK +++ K++ + +K
Sbjct: 375 EKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTS 434
Query: 88 EEKKQKKKEEKKQKKKKE 105
E +K + + ++++
Sbjct: 435 EGVTNEKGTDSQAMEEEK 452
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA
decay, PRE-mRNA splicing, LSM proteins, RNA BI protein;
2.20A {Schizosaccharomyces pombe}
Length = 105
Score = 27.8 bits (62), Expect = 1.3
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 128 TLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENV 172
T G+L + D + NL L + I + G+++ +P + IRG N+
Sbjct: 38 TFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPE-CY-IRGNNI 80
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 27.7 bits (62), Expect = 1.4
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 32 KKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKK 63
K+ + + K EK+E K+ K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.1 bits (58), Expect = 4.4
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 21 KKKEEENKKKQKKKEEKKQKKKEEKKQKKKEK 52
K+ E + ++ + +K+E KK K E
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 25.4 bits (56), Expect = 7.9
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
K+ + + K E+++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 28.7 bits (63), Expect = 1.4
Identities = 19/95 (20%), Positives = 46/95 (48%)
Query: 16 GKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
G ++ K+ E+ +K QK +K ++ + KK KEE+ + + +Q E+
Sbjct: 125 GFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQ 184
Query: 76 DKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
KK +K K +++ ++ +++ +K + + +
Sbjct: 185 QKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQ 219
Score = 26.4 bits (57), Expect = 7.9
Identities = 20/109 (18%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 21 KKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEK-KKEEKKQKKEEEKDKKK 79
K +++ KQ K+ K+ E+ +K ++ +K ++ E KK KEE +
Sbjct: 111 KNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTR 170
Query: 80 EEKKQKKKE-EKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKR 127
E + ++ +Q+KK K K +++ + + + + + + +
Sbjct: 171 EMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQ 219
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 28.7 bits (63), Expect = 1.5
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
+ + E + KKK KQ K+ KK + K E KE K + K K +K E
Sbjct: 324 SLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKNAVKSEKDE 375
Score = 27.6 bits (60), Expect = 3.7
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 62 KKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
KK Q + E + KKK KQ K+ +K ++ + K+ K E KN E++
Sbjct: 320 KKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKNAVKSEKDE 375
Score = 26.8 bits (58), Expect = 6.0
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 2/104 (1%)
Query: 44 EKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD--KKKEEKKQKKKEEKKQKKKEEKKQK 101
+ +K + + E + KKK KQ KE +K +K E ++ K E K K EK +
Sbjct: 317 NQFKKLCSLIQSRYEIRSKKKHFVKQLKEGKKPDLSRKLEILKEIKAELKNAVKSEKDEL 376
Query: 102 KKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLH 145
K E N + LR + F V H
Sbjct: 377 LFSLYDKWVPLFEGELPDQPLANPFSERLYKLRLQEFFLGRVPH 420
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 28.8 bits (65), Expect = 1.6
Identities = 5/48 (10%), Positives = 18/48 (37%)
Query: 64 KEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
E ++ ++ + E++ + E K++ + + K+
Sbjct: 2 GSMHAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 49
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.3 bits (63), Expect = 1.6
Identities = 7/66 (10%), Positives = 25/66 (37%)
Query: 32 KKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKK 91
+ + + + E+ E++ ++ ++ EEE ++ E++ + E +
Sbjct: 185 RGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWAE 244
Query: 92 QKKKEE 97
+
Sbjct: 245 ENADNV 250
Score = 28.0 bits (62), Expect = 2.4
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
R + + + EE +Q+ EE ++ ++E KEE E ++ E + EE D
Sbjct: 191 RTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEEVTE-EQAEATEWAEENADN 249
>3u7q_B Nitrogenase molybdenum-iron protein beta chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A
{Azotobacter vinelandii} PDB: 1fp4_B* 1g21_B* 1g20_B*
1m1n_B* 1l5h_B* 1m1y_B* 1m34_B* 1n2c_B* 2afh_B* 2afi_B*
2afk_B* 2min_B* 3k1a_B* 3min_B*
Length = 523
Score = 28.6 bits (64), Expect = 1.8
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 38 KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKK 83
+ ++ KK++ EEK + + + + +E ++ + +
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
Score = 27.4 bits (61), Expect = 3.7
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 71 KEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
+++ +K+ +E+ Q K +E Q +E + + +
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
Score = 26.6 bits (59), Expect = 6.7
Identities = 7/46 (15%), Positives = 20/46 (43%)
Query: 23 KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKK 68
+++ K KK + ++K + K + + +E +E + +
Sbjct: 16 LDQDYKDMLAKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQREA 61
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 1.8
Identities = 4/39 (10%), Positives = 15/39 (38%)
Query: 60 KEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEK 98
++ + +E+ K+ ++ K E ++ +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
Score = 26.9 bits (59), Expect = 4.5
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 36 EKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
Q+ K + KE K+ + + ++ E +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEAN 260
Score = 26.9 bits (59), Expect = 5.4
Identities = 3/40 (7%), Positives = 15/40 (37%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKE 61
+ +K +E+ ++ K+ + + ++ +
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 28.5 bits (64), Expect = 1.9
Identities = 3/56 (5%), Positives = 16/56 (28%)
Query: 56 KEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
++ + + E + + + + K ++E + + +
Sbjct: 266 RQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 28.1 bits (63), Expect = 2.1
Identities = 5/62 (8%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 12 SPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKK--EEKEEKKEKKKEEKKQ 69
R ++ + Q E++Q+ + + + ++E + +
Sbjct: 259 EVRYTLARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAE 318
Query: 70 KK 71
+
Sbjct: 319 GR 320
Score = 27.7 bits (62), Expect = 2.8
Identities = 3/57 (5%), Positives = 17/57 (29%)
Query: 47 QKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
++ + + E +++ + + K ++E + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 26.5 bits (59), Expect = 7.9
Identities = 3/57 (5%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 40 KKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK-DKKKEEKKQKKKEEKKQKKK 95
++ + + E++++ + + K ++E + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 28.2 bits (62), Expect = 1.9
Identities = 13/76 (17%), Positives = 30/76 (39%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+K+ K KK+ + ++ +++ + E++ E KK K E+ +
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 79 KEEKKQKKKEEKKQKK 94
E+ +K E +
Sbjct: 353 TEQLVAEKIPENETTH 368
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing,
core snRNP domain, systemic lupus eryth SLE, RNA binding
protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Length = 75
Score = 26.6 bits (59), Expect = 2.0
Identities = 8/48 (16%), Positives = 12/48 (25%), Gaps = 7/48 (14%)
Query: 128 TLIGYLRSVDQFANLVLHKTIERIHVGN--QYGDIPRGIFIIRGENVV 173
G L + N + G Q + IRG +
Sbjct: 27 VYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQV-----YIRGCKIR 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 28.5 bits (63), Expect = 2.0
Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 51 EKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
+K + +E + + K E + + KQK + + + K + N
Sbjct: 635 KKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINF 694
Query: 111 KAEEQNRQQGLYPNQ--KRTLI 130
+ +R + PN K TLI
Sbjct: 695 QCSLSSRIAVIGPNGAGKSTLI 716
Score = 26.5 bits (58), Expect = 7.3
Identities = 8/53 (15%), Positives = 16/53 (30%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQK 70
+K + + E K + + K K+K K E + +
Sbjct: 635 KKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 28.3 bits (62), Expect = 2.1
Identities = 17/119 (14%), Positives = 36/119 (30%), Gaps = 7/119 (5%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKK---KEEKKQKKKEKKEEKEEKKE----KKKEEKKQ 69
+R ++ KEE+ KK + E E+K E +E + E +
Sbjct: 93 RRTRRPKEEDPATGTGDPPRKKPTRLAIGVEGGFDLSEEKFELDEDVKIVILPDYLEIAR 152
Query: 70 KKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRT 128
++ E +KQ+ + + + ++ + N R
Sbjct: 153 DGLGGLPDIVRDRVTSAVEALLSADSASRKQEVQAWDGEVRQVSKHAFSLKQLDNPARI 211
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 28.3 bits (64), Expect = 2.1
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 37 KKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
+ K KE K+ K++ ++ +EE ++ ++E
Sbjct: 325 RSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 369
>2rmn_A Tumor protein 63; beta sandwich, DNA binding, P53 family,
activator, alternative promoter usage, alternative
splicing; NMR {Homo sapiens}
Length = 233
Score = 27.8 bits (61), Expect = 2.6
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 76 DKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEK 107
D+K +E +K++ K + ++ +
Sbjct: 200 DRKADEDSIRKQQVSDSTKNGDAFRQNTHGIQ 231
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 27.9 bits (62), Expect = 2.6
Identities = 9/69 (13%), Positives = 30/69 (43%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
K + +++ +++ ++KK ++ ++E K + + + + +E+ K
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Query: 82 KKQKKKEEK 90
Q + E +
Sbjct: 327 GSQSQVETE 335
Score = 27.6 bits (61), Expect = 3.3
Identities = 10/61 (16%), Positives = 28/61 (45%)
Query: 56 KEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
K K + +++ +++ ++KK ++ E++ K K E + + K+ ++
Sbjct: 264 KAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKS 323
Query: 116 N 116
N
Sbjct: 324 N 324
Score = 27.6 bits (61), Expect = 3.4
Identities = 11/67 (16%), Positives = 28/67 (41%)
Query: 34 KEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQK 93
K + ++ ++Q +EKK + +EE K K E + + K++++
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Query: 94 KKEEKKQ 100
+ + +
Sbjct: 327 GSQSQVE 333
Score = 27.2 bits (60), Expect = 5.0
Identities = 13/80 (16%), Positives = 33/80 (41%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
+K + NK + + +Q+ + + ++KK E E++ + K + +
Sbjct: 254 QKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPT 313
Query: 78 KKEEKKQKKKEEKKQKKKEE 97
E K+++K + + E
Sbjct: 314 DTEMKEEQKSNTAGSQSQVE 333
Score = 26.8 bits (59), Expect = 5.3
Identities = 10/65 (15%), Positives = 26/65 (40%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+++ + +++K ++ EE+ + K E + KEE+K +
Sbjct: 271 AVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQS 330
Query: 77 KKKEE 81
+ + E
Sbjct: 331 QVETE 335
Score = 26.8 bits (59), Expect = 5.7
Identities = 9/64 (14%), Positives = 26/64 (40%)
Query: 45 KKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKK 104
+ +++ ++ +EKK ++ E++ K + + + KEE+K
Sbjct: 268 TQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAG 327
Query: 105 EEKK 108
+ +
Sbjct: 328 SQSQ 331
Score = 26.4 bits (58), Expect = 8.6
Identities = 8/64 (12%), Positives = 27/64 (42%)
Query: 52 KKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
K + ++ +++ ++KK ++ +++ K + + + K+E+K N
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Query: 112 AEEQ 115
+
Sbjct: 327 GSQS 330
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A
{Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Length = 1193
Score = 28.1 bits (61), Expect = 2.7
Identities = 9/50 (18%), Positives = 26/50 (52%)
Query: 63 KKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKA 112
+ ++++ EK + K+ + ++EK+Q K ++ K K +++ +
Sbjct: 587 DENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPEH 636
Score = 26.6 bits (57), Expect = 7.5
Identities = 9/49 (18%), Positives = 28/49 (57%)
Query: 55 EKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
++ +E++ EK++ K+ ++ ++EK+Q K ++ K + ++ +
Sbjct: 587 DENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEELSKYKNAEESPE 635
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological
nitrogen fixation, nitrogen metabolism, molybdoenzymes,
electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 27.8 bits (62), Expect = 2.7
Identities = 5/45 (11%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 23 KEEENKK--KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE 65
+++E ++ + K++ E+ + ++ E E +++
Sbjct: 15 EQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRREA 59
Score = 27.4 bits (61), Expect = 3.6
Identities = 4/45 (8%), Positives = 18/45 (40%)
Query: 52 KKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
+++E +E K++ ++ + + + E +++
Sbjct: 15 EQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRREA 59
Score = 27.0 bits (60), Expect = 5.7
Identities = 5/45 (11%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 71 KEEEKDKKKEEKKQ---KKKEEKKQKKKEEKKQKKKKEEKKNKKA 112
+++E + K+Q ++ Q+ + + ++A
Sbjct: 15 EQDEYQELFRNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRREA 59
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 27.5 bits (61), Expect = 2.7
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 33 KKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEK 90
+ E K ++ E K E+KE ++EE + EE+ + KE + ++ + K
Sbjct: 182 RGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Score = 27.1 bits (60), Expect = 4.3
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 41 KKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEK 98
+ E K ++ E + K E+K+ +EEE + EEK + KE + ++ + K
Sbjct: 182 RGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNK 239
Score = 26.8 bits (59), Expect = 6.0
Identities = 13/65 (20%), Positives = 30/65 (46%)
Query: 50 KEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKN 109
+E K + E + ++ E K E+K+ ++EE + +E+ + K+ E ++N
Sbjct: 176 REVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQN 235
Query: 110 KKAEE 114
+
Sbjct: 236 TDNKN 240
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 27.9 bits (62), Expect = 2.8
Identities = 12/82 (14%), Positives = 26/82 (31%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
++ +K + K+ + + + E K+ +E +K E +Q K
Sbjct: 204 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 263
Query: 89 EKKQKKKEEKKQKKKKEEKKNK 110
+ + K E K
Sbjct: 264 NNDKINYTDIKTLSPSEYLIEK 285
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 27.5 bits (61), Expect = 3.0
Identities = 14/97 (14%), Positives = 31/97 (31%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
+++K ++ + E K + K+ + E + K + E
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQTNKYDNEFKN 251
Query: 78 KKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
K K K++ + + K + KNK +
Sbjct: 252 KNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKN 288
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 27.4 bits (60), Expect = 3.5
Identities = 15/104 (14%), Positives = 47/104 (45%), Gaps = 2/104 (1%)
Query: 11 ISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQK 70
++ + K+++K + ++ +++ + K+ E ++K E+ + EK + E +
Sbjct: 100 LTKYSQEMKQERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAE--RLD 157
Query: 71 KEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
++ K EK +++ + +E K + + ++ N+
Sbjct: 158 QDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAH 201
>3vuv_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.11A {Plasmodium falciparum}
Length = 339
Score = 27.5 bits (61), Expect = 3.6
Identities = 12/82 (14%), Positives = 26/82 (31%)
Query: 29 KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKE 88
++ +K + K+ + + + E K+ +E +K E +Q K
Sbjct: 238 EESEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKY 297
Query: 89 EKKQKKKEEKKQKKKKEEKKNK 110
+ + K E K
Sbjct: 298 NNDKINYTDIKTLSPSEYLIEK 319
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 27.4 bits (59), Expect = 3.7
Identities = 15/89 (16%), Positives = 41/89 (46%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
KEE+ ++ + E+ +K ++K E+ ++ K KE+ ++ +E
Sbjct: 158 AHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQ 217
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKE 105
+ + ++ ++ ++ EEK+ + +E
Sbjct: 218 GTPQYMENMEQVFEQCQQFEEKRLRFFRE 246
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 27.5 bits (60), Expect = 3.8
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEE 73
+ K+ +E +K ++ +K KE + KK KEEK +E +
Sbjct: 129 KQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPS 188
Query: 74 --EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
+ KK + K +K ++ K KE+ ++ K+ ++ + E
Sbjct: 189 LNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMEN 232
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 27.7 bits (60), Expect = 4.0
Identities = 16/98 (16%), Positives = 32/98 (32%)
Query: 21 KKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKE 80
E E++ + +E+ K E K ++ ++ E K K EEK +
Sbjct: 705 AYGENEDENDSEMQEQLKSMINELINSKISTFLRDQMDQFELKINALLDKILEEKVTRII 764
Query: 81 EKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
E+K K K + ++ + +
Sbjct: 765 EQKLGSHTGKFSTLKRPQLYMTEEHNVGFDMEVPKKLR 802
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 27.2 bits (61), Expect = 4.1
Identities = 9/66 (13%), Positives = 26/66 (39%)
Query: 40 KKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKK 99
+ + +K + KE + + EE++ + + + + ++K++K +
Sbjct: 31 AVMSNEPELRKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLREL 90
Query: 100 QKKKKE 105
K E
Sbjct: 91 AGVKGE 96
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic
vesicle, alternative splicing, endocytosis,
lipid-binding, golgi apparatus, adaptor, membrane,
transport; HET: IHP; 2.59A {Rattus norvegicus} PDB:
2xa7_A 2jkr_A 2jkt_A
Length = 621
Score = 27.2 bits (60), Expect = 4.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKE 54
R K KE E K+ K+ + K K +K KK+
Sbjct: 21 RNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKK 57
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel
ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB:
3izs_e 3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 27.1 bits (59), Expect = 4.4
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKK 87
K Q+K E+ ++ +K KEK+ E+ ++E + + K++ K
Sbjct: 16 SKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSY 75
Query: 88 EEKKQKK 94
+ Q K
Sbjct: 76 YVEAQHK 82
Score = 27.1 bits (59), Expect = 4.6
Identities = 11/82 (13%), Positives = 37/82 (45%)
Query: 5 IAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKK 64
+A + ++P +K K +++ ++ ++ +K KE++ + ++E + ++
Sbjct: 1 MAAEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAER 60
Query: 65 EEKKQKKEEEKDKKKEEKKQKK 86
+ K++ + + Q K
Sbjct: 61 NIIQAKRDAKAAGSYYVEAQHK 82
Score = 26.7 bits (58), Expect = 5.8
Identities = 12/83 (14%), Positives = 33/83 (39%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEK 107
+K E + KK K +++ ++ E+ +K K+K+ ++ +K+ + +
Sbjct: 3 AEKILTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNI 62
Query: 108 KNKKAEEQNRQQGLYPNQKRTLI 130
K + + Q + +
Sbjct: 63 IQAKRDAKAAGSYYVEAQHKLVF 85
>2v0p_A TAP42, type 2A phosphatase-associated protein 42; phosphorylation,
signal transduction inhibitor, hydrolase in; 1.80A
{Saccharomyces cerevisiae}
Length = 234
Score = 27.1 bits (59), Expect = 4.6
Identities = 12/77 (15%), Positives = 27/77 (35%)
Query: 42 KEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQK 101
++ K + E + K K K++EK + + K+ K +
Sbjct: 126 PLVGEKLGNFKDRYNPQLSELYAQPKNNKDLSGAQLKRKEKIELFQRNKEISTKLHCLEL 185
Query: 102 KKKEEKKNKKAEEQNRQ 118
+ K ++ +E R+
Sbjct: 186 ELKNNDEDHDHDELLRE 202
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 26.9 bits (59), Expect = 4.8
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K + + K KKE K+ KK +++K E+ ++E++
Sbjct: 242 KVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEE 301
Query: 77 K 77
Sbjct: 302 D 302
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 27.0 bits (59), Expect = 4.9
Identities = 14/90 (15%), Positives = 30/90 (33%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ +EE + K + + E K EKK KE+
Sbjct: 208 MEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAA 267
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEE 106
+ K+ ++ K +E++ + K ++
Sbjct: 268 ESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 27.1 bits (61), Expect = 5.0
Identities = 5/41 (12%), Positives = 15/41 (36%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQK 70
Q+ E Q+K+ + K+ + ++ + +
Sbjct: 459 PQRNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
Score = 26.8 bits (60), Expect = 6.5
Identities = 4/37 (10%), Positives = 12/37 (32%)
Query: 83 KQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
Q+ E Q+K+ + + ++ +
Sbjct: 459 PQRNIENWVQRKRPGSPAAQASKRASEMACQQPTQPP 495
Score = 26.4 bits (59), Expect = 7.7
Identities = 6/41 (14%), Positives = 14/41 (34%)
Query: 38 KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
Q+ E Q+K+ + K + +Q + +
Sbjct: 459 PQRNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 27.0 bits (59), Expect = 5.1
Identities = 5/29 (17%), Positives = 16/29 (55%)
Query: 42 KEEKKQKKKEKKEEKEEKKEKKKEEKKQK 70
E+K ++ K ++ +++ +K ++ K
Sbjct: 6 AEDKAAVERSKMIDRNLREDGEKAAREVK 34
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 27.3 bits (61), Expect = 5.3
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 70 KKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQ 100
+ EE+ + ++ K ++ K++KKE+K
Sbjct: 2 ELEEDLKGRADKNFSKMGKKSKKEKKEKKPA 32
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 26.7 bits (58), Expect = 5.3
Identities = 14/99 (14%), Positives = 34/99 (34%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
+ + E + + + +K K + K + + E + +K + +
Sbjct: 85 RHLNSDLEVVVQTFHGDLLQHMEKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWR 144
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNR 117
E K+ K E K+ Q + + + AE + +
Sbjct: 145 MERKRDKNAREMKESVNRLHAQMQAFVSESKRAAELEEK 183
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 26.8 bits (60), Expect = 5.4
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 65 EEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
+ KE+ K++ K+K + + +E + KEE +
Sbjct: 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRT 49
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 27.1 bits (59), Expect = 5.8
Identities = 12/76 (15%), Positives = 31/76 (40%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
++ +K E+ ++ Q++ + + E+ K + + + + K K +E K K ++
Sbjct: 111 QQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAK 170
Query: 77 KKKEEKKQKKKEEKKQ 92
K K +
Sbjct: 171 DKYVRSLWKLFAHHNR 186
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 26.9 bits (59), Expect = 6.0
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 61 EKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKE 105
K+EE + ++ ++ E K K K+
Sbjct: 5 HHHHHSSGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
Score = 26.9 bits (59), Expect = 6.7
Identities = 6/39 (15%), Positives = 15/39 (38%)
Query: 59 KKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEE 97
+ K+EE + ++ ++ E K K ++
Sbjct: 11 SGLVPRGSHMFKREEIIEMANKDFEKAWIETKDLIKAKK 49
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 26.8 bits (59), Expect = 6.0
Identities = 7/52 (13%), Positives = 18/52 (34%)
Query: 14 RIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKE 65
G K++ K K + + Q + + E + + +E + +
Sbjct: 176 FFGPCLLKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAKIRELEHK 227
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 27.0 bits (58), Expect = 6.2
Identities = 10/79 (12%), Positives = 31/79 (39%)
Query: 20 KKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKK 79
+ +E + ++++K + + + ++ +E + ++ K + +K
Sbjct: 450 TEANQEGSDMREQEKNIWTASQIMKAEMERWMDRELRLGPEKNAILPTDDKNKIMISVRK 509
Query: 80 EEKKQKKKEEKKQKKKEEK 98
+ + Q K + K K K
Sbjct: 510 QIEIQTKIQNAKNKPMGLK 528
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding,
aminoacyl-tRNA synthetase, LI nucleotide-binding,
protein biosynthesis; 2.80A {Entamoeba histolytica}
Length = 548
Score = 26.7 bits (59), Expect = 6.4
Identities = 9/57 (15%), Positives = 12/57 (21%), Gaps = 2/57 (3%)
Query: 81 EKKQKKKEEKKQKKKEEKKQKKKKEEKKNK--KAEEQNRQQGLYPNQKRTLIGYLRS 135
+EKK + K + Q K T I L
Sbjct: 2 PGSMAATQEKKPQLPPVVLLKTPELVSGENFKVMPMHQSQPCYKTGLKYTEIEELVP 58
Score = 26.3 bits (58), Expect = 9.7
Identities = 7/48 (14%), Positives = 13/48 (27%)
Query: 36 EKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKK 83
+EKK + K + + K + + K K
Sbjct: 2 PGSMAATQEKKPQLPPVVLLKTPELVSGENFKVMPMHQSQPCYKTGLK 49
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase,
phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus
musculus}
Length = 302
Score = 26.6 bits (58), Expect = 6.6
Identities = 13/71 (18%), Positives = 33/71 (46%)
Query: 49 KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
++ + KE+ E + K ++ +DK +E + ++ + ++ + K+ + +
Sbjct: 2 SQQDQVVKEDSVEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNET 61
Query: 109 NKKAEEQNRQQ 119
K EEQ + Q
Sbjct: 62 IKIFEEQGQTQ 72
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 26.9 bits (59), Expect = 6.7
Identities = 14/120 (11%), Positives = 43/120 (35%), Gaps = 15/120 (12%)
Query: 11 ISPRIGKRKKKKKE--EENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKK 68
I + K + +E + + K+ K + ++ + +E+++
Sbjct: 614 IEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEE 673
Query: 69 QKKEEEKDKKKEEKKQKKK-------------EEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
E+ ++ ++ +E+ QK ++K++K+ + E K + +
Sbjct: 674 SSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKD 733
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 26.5 bits (59), Expect = 6.8
Identities = 11/83 (13%), Positives = 33/83 (39%)
Query: 27 NKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKK 86
+ +K + + ++ + KQ KK+ EE + + + + ++ K +
Sbjct: 106 TRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPR 165
Query: 87 KEEKKQKKKEEKKQKKKKEEKKN 109
+ +E+KQ + ++ +
Sbjct: 166 DRWLELGLTDEEKQNQLEQLAEQ 188
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 26.7 bits (58), Expect = 6.9
Identities = 24/111 (21%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
+ +K+ + KE K+ + K QK KK ++ E KK KEE+
Sbjct: 120 KNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAA--KKAHHAACKEEKLAI 177
Query: 78 KKEEKKQKKKEE-KKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKR 127
+E + +Q KK + K +K K++ K + + + L +
Sbjct: 178 SREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQ 228
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 26.7 bits (58), Expect = 7.0
Identities = 15/95 (15%), Positives = 42/95 (44%)
Query: 16 GKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEK 75
+++K E+ KK QK + K ++ K K E+ +++ ++
Sbjct: 112 QIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQ 171
Query: 76 DKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
KK ++ QK K++ ++ +++ ++ + + +
Sbjct: 172 VKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSV 206
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 26.1 bits (57), Expect = 7.8
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 2 KISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKE 54
+++ PK K KK + K ++ KK +K+K K K+ + K E
Sbjct: 50 ALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIE 102
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 26.4 bits (58), Expect = 8.0
Identities = 7/34 (20%), Positives = 14/34 (41%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKE 51
R + + EE + QK+ + +EE +
Sbjct: 20 RTARTQAEEREMIQKECAAIRSSFREEDNTYRCR 53
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 26.1 bits (57), Expect = 8.1
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 54 EEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEK 90
+ + E +D ++ EK+++ EK
Sbjct: 217 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK 253
>3plw_A Recombination enhancement function protein; HNH nuclease, DNAse,
hydrolase; 1.40A {Enterobacteria phage P1}
Length = 186
Score = 26.0 bits (56), Expect = 8.1
Identities = 16/84 (19%), Positives = 37/84 (44%)
Query: 32 KKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKK 91
K E+K ++ ++ +K ++ + EK + Q ++ + KQK++
Sbjct: 2 KTIEQKIEQCRKWQKAARERAIARQREKLADPVWRESQYQKMRDTLDRRIAKQKERPPAS 61
Query: 92 QKKKEEKKQKKKKEEKKNKKAEEQ 115
+ +K K K + + + AEE+
Sbjct: 62 KTRKSAVKIKSRGLKGRTPTAEER 85
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 26.5 bits (58), Expect = 8.3
Identities = 16/98 (16%), Positives = 36/98 (36%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ + ++ + + +K+ + Q K + K + ++ KK ++K+E +K
Sbjct: 246 IERLRYEQNIREACTINGKNEKKCINSKSGQGDKIQGACKRKCEKYKKYISEKKQEWDKQ 305
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
K K E K K K+ + + E
Sbjct: 306 KTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIE 343
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP,
deubiquitinating enzyme, substrate recognition; 3.20A
{Homo sapiens}
Length = 522
Score = 26.5 bits (58), Expect = 8.3
Identities = 7/41 (17%), Positives = 22/41 (53%)
Query: 49 KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
++ K E + ++ + +++K+ E +K+K+++E
Sbjct: 482 RESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522
Score = 26.5 bits (58), Expect = 8.6
Identities = 7/40 (17%), Positives = 22/40 (55%)
Query: 67 KKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEE 106
+ + E + + Q+ E +++K+ E +++K+++E
Sbjct: 483 ESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQE 522
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 25.9 bits (56), Expect = 9.1
Identities = 13/76 (17%), Positives = 35/76 (46%)
Query: 55 EKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
E +KK + E+ ++ K E++ + KQ+K E + +K + + +++ ++K +
Sbjct: 7 ENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKA 66
Query: 115 QNRQQGLYPNQKRTLI 130
+ P + +
Sbjct: 67 RKTGAFYVPAEAKVAF 82
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 26.2 bits (57), Expect = 9.2
Identities = 16/93 (17%), Positives = 38/93 (40%)
Query: 23 KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEK 82
+ + + +E++ KK+ + K + E+ KK ++ + K K+E
Sbjct: 202 QNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEV 261
Query: 83 KQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
K+K+ K ++K + +K+ + E
Sbjct: 262 KKKRWNRPKMSLAQKKDRVAQKKASFLRAQERA 294
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 26.3 bits (57), Expect = 9.2
Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 7/101 (6%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKK------ 71
+ E K + +++++ ++Q+++ K K + +
Sbjct: 334 TIDRTILENYFSSLKNPKLREEQEAARRRQQRESKSNAATPTKGPEGKVAGPADAPMDSG 393
Query: 72 -EEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
EEEK KK + +K+K ++ ++ ++ + KK
Sbjct: 394 AEEEKAGAATVKKPSPSKARKKKLNKKGRKMAGRKRGRPKK 434
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 26.0 bits (56), Expect = 9.7
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEE 58
+K+K E K+ +++ + + + K+ K+E ++
Sbjct: 139 VRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDD 178
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.301 0.124 0.316
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,864,617
Number of extensions: 181813
Number of successful extensions: 8663
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5103
Number of HSP's successfully gapped: 2270
Length of query: 213
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 123
Effective length of database: 4,188,903
Effective search space: 515235069
Effective search space used: 515235069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 55 (24.9 bits)