RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5557
(213 letters)
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 71
Score = 52.4 bits (126), Expect = 3e-10
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
+ G LRS DQ NL+L E I RG ++RGENV+ + V
Sbjct: 23 HEIRGILRSFDQHVNLLLEDAEEIIDGNV----YKRGTMVVRGENVLFISPV 70
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 81
Score = 51.3 bits (123), Expect = 9e-10
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-------GIFIIRGENVVLM 175
R IG ++ D+ NL+L E + + G+ ++RGEN+V M
Sbjct: 19 RIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 74
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon
Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Length = 72
Score = 48.9 bits (117), Expect = 5e-09
Identities = 15/49 (30%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 175
R G L D NLVL E + G +IRG+ VV +
Sbjct: 24 REFRGTLDGYDIHMNLVLLDAEEIQNGEVV---RKVGSVVIRGDTVVFV 69
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon
Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Length = 75
Score = 48.2 bits (115), Expect = 1e-08
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 124 NQKRTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 175
++ L+G L VD + NL L +E G ++RG NVVL+
Sbjct: 24 GEENQLVGKLEGVDDYMNLYLTNAMECKGEEKV---RSLGEIVLRGNNVVLI 72
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 76
Score = 48.2 bits (115), Expect = 1e-08
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
+ + G LRS DQ NLVL + E G+ G +IRG+NV+L+ +
Sbjct: 28 KEVRGMLRSYDQHMNLVLSDSEEIQSDGSG---KKLGTIVIRGDNVILISPL 76
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein
LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Length = 92
Score = 48.7 bits (116), Expect = 1e-08
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 12/61 (19%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR------------GIFIIRGENVVL 174
+ G LR D++ N+VL E ++ ++ G NV +
Sbjct: 26 KEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAM 85
Query: 175 M 175
+
Sbjct: 86 L 86
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 68
Score = 47.4 bits (113), Expect = 2e-08
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEV 178
G L S D + NL L++ E + + G IR NV+ + E+
Sbjct: 18 TEYRGTLVSTDNYFNLQLNEAEEFVAGVSH---GTLGEIFIRCNNVLYIREL 66
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon
Pyrococcus abyssi [TaxId: 29292]}
Length = 71
Score = 45.5 bits (108), Expect = 1e-07
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 175
G L D N+VL G +IRG+NV+ +
Sbjct: 23 FEFRGRLIGYDIHLNVVLADAEMIQDGEVV---KRYGKIVIRGDNVLAI 68
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 74
Score = 45.1 bits (107), Expect = 2e-07
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLM 175
R G L+S D NLVL+ E G +IRG+N+V +
Sbjct: 27 REFRGVLKSFDLHMNLVLNDAEELEDGEVT---RRLGTVLIRGDNIVYI 72
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 93
Score = 39.5 bits (92), Expect = 3e-05
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPR-----------GIFIIRGENVVL 174
+ L+G +++ D+ N+VL E + G + +RG++V++
Sbjct: 25 KKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIV 83
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 33.9 bits (77), Expect = 0.011
Identities = 7/103 (6%), Positives = 35/103 (33%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ ++ ++ K QK Q + + + + + + +Q E +
Sbjct: 170 DERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQT 229
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
+ + ++ + + +++ + + ++ A + +
Sbjct: 230 RYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRA 272
Score = 33.5 bits (76), Expect = 0.012
Identities = 6/105 (5%), Positives = 34/105 (32%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+R ++ + K + ++ + + + + E + + ++ + +
Sbjct: 171 ERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTR 230
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGL 121
+ ++ + + ++ + + ++ E R L
Sbjct: 231 YQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAIRAASL 275
Score = 28.8 bits (64), Expect = 0.37
Identities = 6/103 (5%), Positives = 34/103 (33%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ + + +Q ++ + +K ++ + + + +
Sbjct: 161 AALDAQLTPDERAQQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQM 220
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQ 119
++ +E Q + + ++ Q +++ + A+ + +
Sbjct: 221 QQDDEAWQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTF 263
>d2zkmx4 c.1.18.1 (X:312-660) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 349
Score = 32.7 bits (74), Expect = 0.025
Identities = 17/93 (18%), Positives = 37/93 (39%)
Query: 12 SPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKK 71
SP + K K ++N+ K + E E+ + +EE+ +++
Sbjct: 139 SPEDLRGKILIKNKKNQFSGPTSSSKDTGGEAEGSSPPSAPAVWAGEEGTELEEEEVEEE 198
Query: 72 EEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKK 104
EEE+ +E++ KK + + E ++
Sbjct: 199 EEEESGNLDEEEIKKMQSDEGTAGLEVTAYEEM 231
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 31.6 bits (72), Expect = 0.044
Identities = 13/40 (32%), Positives = 28/40 (70%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQK 70
Q +KE+KKQ +EKKQ + E+++ +E+ K + + ++++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDYKFCELDGRREQ 141
Score = 30.1 bits (68), Expect = 0.16
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 48 KKKEKKEEKEEKKEKKKEEKK---QKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
+ K+ + KE + K + +KE+KKQ +EKKQ + E +K ++
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 29.7 bits (67), Expect = 0.23
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 59 KKEKKKEEKKQKKEEEKDKKK------EEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
+ K+ E K+ + + Q +KE+KKQ +EKKQ + + EK +
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 25.8 bits (57), Expect = 3.5
Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 29 KKQKKKEEKKQKKKEEKKQKK-------KEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
+ K+ E K+ + + +KE+KK+ +EKK + E++K +E+
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKK-QIRLEREKFEED 129
Query: 82 KKQKKKEEKKQK 93
K + + ++++
Sbjct: 130 YKFCELDGRREQ 141
Score = 25.1 bits (55), Expect = 5.9
Identities = 11/71 (15%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 18 RKKKKKEEENKKKQKKKEEKK---QKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+ K+ + KE + K + + +K++KK+ ++K++ + E+++ +E+
Sbjct: 71 LQVLKESGGPLNGIEIKEFSRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
Query: 75 KDKKKEEKKQK 85
K + + ++++
Sbjct: 131 KFCELDGRREQ 141
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 127
Score = 30.5 bits (69), Expect = 0.060
Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENVVLMGEVVTVVNVK 185
G L +VD N+VL + G ++ + I +V + ++++
Sbjct: 21 EVYKGVLHAVDNQLNIVLANASNK--AGEKFNRV-----FIMYRYIVHIDSTERRIDMR 72
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 30.8 bits (70), Expect = 0.093
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 31 QKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQK 70
+ + E +KQ KEEK + K+E ++ +E + K++
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKER 149
Score = 30.1 bits (68), Expect = 0.15
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
Query: 59 KKEKKKEEKKQKKEEEK----------DKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
+KE EEK K + E +KQ KEEK + K+E +K K+
Sbjct: 83 RKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 28.5 bits (64), Expect = 0.53
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 29 KKQKKKEEKKQKKKEEK---KQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
+K+ EEK K Q + K + E +K+ KEEK + K EE +K +E
Sbjct: 83 RKEMTNEEKNIITNLSKCDFTQMSQYFKAQTEARKQMSKEEKLKIK-EENEKLLKEYGFC 141
Query: 86 KKEEKKQK 93
+ K++
Sbjct: 142 IMDNHKER 149
Score = 26.2 bits (58), Expect = 3.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 23 KEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEK 62
K + +KQ KEEK + K+E +K K+ + KE+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEYGFCIMDNHKER 149
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 30.6 bits (68), Expect = 0.13
Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 17/120 (14%)
Query: 13 PRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKK--------- 63
PR K K N + ++ + K +E+ ++ + E ++
Sbjct: 640 PRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLL 699
Query: 64 --------KEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
KE ++ +++++K+ E + K K + K + +E + AE +
Sbjct: 700 GMRIWSLTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEAR 759
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
fragment {Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 30.5 bits (68), Expect = 0.16
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKE 54
R K KE E K+ K+ + K K +K KK+
Sbjct: 13 RNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKKK 49
Score = 27.4 bits (60), Expect = 1.4
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 41 KKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
K+ E K+ KE + + K K + KK+
Sbjct: 18 KEAEIKRINKELANIRSKFKGDKALDGYSKKK 49
Score = 25.9 bits (56), Expect = 4.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 33 KKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKK 64
K+ E K+ KE + K K ++ + KKK
Sbjct: 18 KEAEIKRINKELANIRSKFKGDKALDGYSKKK 49
Score = 25.5 bits (55), Expect = 6.2
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 62 KKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKK 95
K KE + ++ +E + + K K + KKK
Sbjct: 16 KSKEAEIKRINKELANIRSKFKGDKALDGYSKKK 49
Score = 25.1 bits (54), Expect = 8.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 66 EKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKK 103
K K+ E K KE + + K K + KKK
Sbjct: 14 NCKSKEAEIKRINKE--LANIRSKFKGDKALDGYSKKK 49
>d1ij5a_ a.39.1.9 (A:) Cbp40 (plasmodial specific CaII-binding
protein LAV1-2) {Physarum polycephalum [TaxId: 5791]}
Length = 321
Score = 29.6 bits (65), Expect = 0.27
Identities = 17/97 (17%), Positives = 47/97 (48%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
KK EN ++ +KK + +E + + + + +KE++++ K E QK + E D ++
Sbjct: 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERA 74
Query: 82 KKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
+++++ ++++ K+ + + + R
Sbjct: 75 EREREAARGDAAAEKQRLASLLKDLEDDASGYNRLRP 111
Score = 28.1 bits (61), Expect = 0.80
Identities = 16/94 (17%), Positives = 40/94 (42%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
K+ + EE KK K+ + + Q ++++E+K + E ++ + + E+
Sbjct: 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERA 74
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
+++ E + +KQ+ K + N+
Sbjct: 75 EREREAARGDAAAEKQRLASLLKDLEDDASGYNR 108
Score = 27.7 bits (60), Expect = 1.1
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
++ + E N KK + E+ QKK + KE ++ E + +K++E+K K E K
Sbjct: 5 QELTQREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKV 64
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
+ E +++ E++++ +K+ K E +
Sbjct: 65 QNEFDARERAEREREAARGDAAAEKQRLASLLKDLEDD 102
>d1qasa3 c.1.18.1 (A:299-625) Phospholipase C isozyme D1 (PLC-D1)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 327
Score = 29.2 bits (65), Expect = 0.31
Identities = 11/114 (9%), Positives = 32/114 (28%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
K KK + E E + + +++ + + + K+++ K E
Sbjct: 140 KGKKLGGLLPAGGENGSEATDVSDEVEAAEMEDEAVRSQVQHKPKEDKLKLVPELSDMII 199
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGY 132
+ + + E + + +++ + N Y
Sbjct: 200 YCKSVHFGGFSSPGTSGQAFYEMASFSESRALRLLQESGNGFVRHNVSCLSRIY 253
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret
disjunctional) {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 368
Score = 28.7 bits (63), Expect = 0.46
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 39 QKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
+++ EE + +++ E E KE+ + ++KE
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
Score = 28.0 bits (61), Expect = 0.92
Identities = 4/34 (11%), Positives = 17/34 (50%)
Query: 78 KKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
++ ++ + E++ + E K++ + + K+
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
Score = 26.0 bits (56), Expect = 3.4
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 61 EKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKK 94
++ EE + E++ + + K+Q + ++K+
Sbjct: 2 RQRTEELLRCNEQQAAELETCKEQLFQSNMERKE 35
Score = 25.3 bits (54), Expect = 6.7
Identities = 6/35 (17%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 53 KEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKK 87
++ EE + E++ + E K++ + ++K+
Sbjct: 2 RQRTEELL-RCNEQQAAELETCKEQLFQSNMERKE 35
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 28.5 bits (63), Expect = 0.60
Identities = 13/81 (16%), Positives = 24/81 (29%)
Query: 39 QKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEK 98
QK + K K ++E+ K E +K K E+ + + E
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTT 60
Query: 99 KQKKKKEEKKNKKAEEQNRQQ 119
K K + + +
Sbjct: 61 DGKFLKASAVDDAFSKSTSKA 81
Score = 26.1 bits (57), Expect = 3.5
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKE----KKKEEKKQKKEEEKDKKKEEKK 83
+K K + ++E+ K E ++ K E + + + E +
Sbjct: 1 QKDLADYPVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTT 60
Query: 84 QKKKEEKKQKKKEEKKQKKKKEEKKNKK 111
K + K K + +
Sbjct: 61 DGKFLKASAVDDAFSKSTSKAKYVQKIL 88
Score = 25.0 bits (54), Expect = 8.8
Identities = 11/103 (10%), Positives = 30/103 (29%), Gaps = 3/103 (2%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKE---EKEEKKEKKKEEKKQKKEE 73
K K E+E + E ++ K E+ + + + E + +
Sbjct: 8 PVKLKAYEDEQASIKAALAELEKHKNEDGNLTEPSAQNLVYDLEPNANLSLTTDGKFLKA 67
Query: 74 EKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQN 116
K K + ++ + + E+ + + +
Sbjct: 68 SAVDDAFSKSTSKAKYVQKILQLDDLDITNLEQSNDVASSMEL 110
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 28.7 bits (63), Expect = 0.61
Identities = 9/84 (10%), Positives = 24/84 (28%)
Query: 3 ISIAPKGAISPRIGKRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEK 62
++I I K K E + + + + +K+ +
Sbjct: 125 LAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPTIRKDGLKLVGSW 184
Query: 63 KKEEKKQKKEEEKDKKKEEKKQKK 86
KK+ +E + + ++
Sbjct: 185 KKDRATGDADEPELRVLSTEEILN 208
Score = 28.7 bits (63), Expect = 0.68
Identities = 10/98 (10%), Positives = 30/98 (30%)
Query: 33 KKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQ 92
+E + ++ K +K+ K K + E D + + +
Sbjct: 113 LLDEHNELMRQALAIKDSKKRFAAIWTLCKTKMVCETDVPSEDDPTQLVSRGGCGNTQPT 172
Query: 93 KKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLI 130
+K+ K ++ + ++ + L + +
Sbjct: 173 IRKDGLKLVGSWKKDRATGDADEPELRVLSTEEILNIF 210
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 28.4 bits (62), Expect = 0.69
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 37 KKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEE 81
+ K KE K+ K++ ++ +EE ++ ++E
Sbjct: 320 RSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 27.3 bits (59), Expect = 1.6
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
+ + K +E + KK KE+ K +E+ ++ ++E
Sbjct: 320 RSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.1 bits (56), Expect = 3.4
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEE 58
K + + KK K++ +K +E +E ++E
Sbjct: 323 VNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.1 bits (56), Expect = 3.8
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 45 KKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEE 89
+ K ++ + K+ KE+ K +E+ ++ ++E
Sbjct: 320 RSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
Score = 26.1 bits (56), Expect = 4.1
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 22 KKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEE 66
+ + K +E + KK K++ ++ +E+ E+ ++E
Sbjct: 320 RSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 27.7 bits (61), Expect = 1.0
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 64 KEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
E+ Q++ EEK+ ++ K +E+ + + ++ K K+E
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPP 260
Score = 27.7 bits (61), Expect = 1.1
Identities = 10/44 (22%), Positives = 22/44 (50%)
Query: 51 EKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKK 94
+K +EE +EK EK + E+D + + ++ + K++
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETP 257
Score = 25.4 bits (55), Expect = 5.2
Identities = 8/46 (17%), Positives = 23/46 (50%)
Query: 55 EKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQ 100
+ E+ +++ EEK ++ + +E+ + + ++ K K+E
Sbjct: 213 DPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPD 258
Score = 25.4 bits (55), Expect = 5.9
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 49 KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
++ +E+ E+K ++ K EE+ + ++ K +++ E
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPDPPE 261
Score = 25.4 bits (55), Expect = 5.9
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 48 KKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQ 92
+K +EE EEK +K + +E+ + + ++ K K+E
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQETPD 258
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 25.8 bits (57), Expect = 1.5
Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 3/46 (6%)
Query: 127 RTLIGYLRSVDQFANLVLHKTIERIHVGNQYGDIPRGIFIIRGENV 172
+ G + VD N L + + IRG N+
Sbjct: 22 TQVHGTITGVDVSMNTHLKAVKMTLKNREP---VQLETLSIRGNNI 64
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 27.2 bits (59), Expect = 1.7
Identities = 11/78 (14%), Positives = 26/78 (33%)
Query: 36 EKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKK 95
E +++ + K +K K+ K ++ K + E + E +
Sbjct: 132 EFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNL 191
Query: 96 EEKKQKKKKEEKKNKKAE 113
E K +++ +E
Sbjct: 192 PEDPTKWSQDDLLAFASE 209
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 503
Score = 27.4 bits (59), Expect = 1.7
Identities = 16/99 (16%), Positives = 42/99 (42%), Gaps = 5/99 (5%)
Query: 25 EENKKKQKKK-----EEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKK 79
E + K K +E ++++ ++ + +K K++E K+ +E+D+
Sbjct: 4 EYRRTNFKNKGRFSADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESS 63
Query: 80 EEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQ 118
Q+ + +Q+ + +Q + ++ A + RQ
Sbjct: 64 VSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQ 102
>d1ku2a2 a.177.1.1 (A:93-272) Sigma factor SigA {Thermus aquaticus
[TaxId: 271]}
Length = 180
Score = 26.7 bits (58), Expect = 1.8
Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 3/139 (2%)
Query: 15 IGKRKKKKKEEENK--KKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKE 72
IG+ EEE +K ++ E +K E ++ +E K +K
Sbjct: 11 IGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGL 70
Query: 73 EEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGY 132
+EK K ++ K + K+ + ++ E + E N + + +K T G
Sbjct: 71 KEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGL 130
Query: 133 -LRSVDQFANLVLHKTIER 150
+ Q N L + +E+
Sbjct: 131 SFLDLIQEGNQGLIRAVEK 149
>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
1280]}
Length = 235
Score = 26.8 bits (59), Expect = 1.9
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 35 EEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEE 74
E+K+++ EK Q+K + K + + + E +K ++
Sbjct: 22 EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKD 61
Score = 24.9 bits (54), Expect = 7.6
Identities = 9/47 (19%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 88 EEKKQKKKEEKKQKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLR 134
E+K+++ EK Q+K + +A + + + L + ++G+++
Sbjct: 22 EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLE-KINKDIVGWIK 67
>d1y2oa1 a.238.1.3 (A:1-248) BAP2/IRSp53 N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 248
Score = 26.5 bits (58), Expect = 2.1
Identities = 13/68 (19%), Positives = 33/68 (48%)
Query: 49 KKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKK 108
+ + + K+ + E++ + +K + + +K +KK + K +K K+ + +
Sbjct: 110 ELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYIDAIS 169
Query: 109 NKKAEEQN 116
NK+ E +N
Sbjct: 170 NKQGELEN 177
Score = 25.0 bits (54), Expect = 7.0
Identities = 14/84 (16%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 38 KQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK--KKEEKKQKKK 95
+QK + + + K+ + E++ K K + E +K +KK + + K +K+ +
Sbjct: 106 EQKVELDSRYLSAALKKYQTEQRSKGDALDKCQAELKKLRKKSQGSKNPQKYSDKELQYI 165
Query: 96 EEKKQKKKKEEKKNKKAEEQNRQQ 119
+ K+ + E + +
Sbjct: 166 DAISNKQGELENYVSDGYKTALTE 189
>d1csha_ a.103.1.1 (A:) Citrate synthase {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 435
Score = 26.3 bits (57), Expect = 3.1
Identities = 11/106 (10%), Positives = 28/106 (26%), Gaps = 11/106 (10%)
Query: 40 KKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKKEEKKQKKKEEKK 99
+K ++ ++ + + Q++ K K
Sbjct: 287 QKDLGADASDEKLRDYIWNTLNSGRVVPGYGHAVLRKTDPRYTCQREFALKHLPSDPMFK 346
Query: 100 QKKKKEEKKNKKAEEQNRQQGLYPNQKRTLIGYLRSVDQFANLVLH 145
+ + EQ + + +PN VD + ++L
Sbjct: 347 LVAQLYKIVPNVLLEQGKAKNPWPN-----------VDAHSGVLLQ 381
>d2elba1 a.238.1.1 (A:6-273) DCC-interacting protein 13-alpha, APPL1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 26.2 bits (57), Expect = 3.3
Identities = 17/80 (21%), Positives = 28/80 (35%)
Query: 26 ENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQK 85
K++ KE K+ + + + + KK+E K K E +D KKQ
Sbjct: 111 TQFKERDLKEILTLKEVFQIASNDHDAAINRYSRLSKKRENDKVKYEVTEDVYTSRKKQH 170
Query: 86 KKEEKKQKKKEEKKQKKKKE 105
+ + KKK
Sbjct: 171 QTMMHYFCALNTLQYKKKIA 190
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 25.7 bits (56), Expect = 5.2
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 30 KQKKKEEKKQKKKEEKKQKKKEKKEEKEEKK 60
Q KE +K+++ EEK ++ K KE+ E+++
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.9 bits (54), Expect = 8.2
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 67 KKQKKEEEKDKKKEEKKQKKKEEKKQKKKE 96
+ KE +K ++ EEK ++ K K++ +KE
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 25.4 bits (55), Expect = 5.4
Identities = 16/99 (16%), Positives = 45/99 (45%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ K + + + K+K E+ K+K ++ KK+E+ K+ K+ +E ++ +
Sbjct: 214 DKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQAKQYQEYQKGNNYKMY 273
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEEQ 115
+ + K + +K +K + + +E+ + + +
Sbjct: 274 SEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSDYKNK 312
>d1je5a_ b.40.4.7 (A:) gp2.5 {Bacteriophage T7 [TaxId: 10760]}
Length = 197
Score = 25.0 bits (54), Expect = 6.9
Identities = 10/92 (10%), Positives = 26/92 (28%)
Query: 19 KKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKK 78
K + + K ++ ++ + + +K K E +
Sbjct: 45 PNKDPRCQRMVDEIVKCHEEAYAAAVEEYEANPPAVARGKKPLKPYEGDMPFFDNGDGTT 104
Query: 79 KEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNK 110
+ K + K+ K+ + + K K
Sbjct: 105 TFKFKCYASFQDKKTKETKHINLVVVDSKGKK 136
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 25.1 bits (54), Expect = 7.0
Identities = 10/50 (20%), Positives = 24/50 (48%)
Query: 28 KKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDK 77
K+ + E+ + K + K+K + E + + + + + KE EK++
Sbjct: 2 NKELETLREENRVKSDMLKEKLSKDAENHKAYLKSHQVHRHKLKEMEKEE 51
>d1m1nb_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 522
Score = 25.0 bits (54), Expect = 7.5
Identities = 7/36 (19%), Positives = 16/36 (44%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKK 53
KK+ EE + K E + +E ++ +++
Sbjct: 24 AKKRDGFEEKYPQDKIDEVFQWTTTKEYQELNFQRE 59
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 25.0 bits (54), Expect = 7.5
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 42 KEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKDKKKEEKKQKKK 87
+EE + +E E EK K + + + + K+ KK
Sbjct: 3 REEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIISNKK 48
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 25.0 bits (54), Expect = 8.5
Identities = 12/98 (12%), Positives = 31/98 (31%)
Query: 17 KRKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEKKKEEKKQKKEEEKD 76
+ K++ + K K + ++ +K+K+ + K K
Sbjct: 188 ELPKEQGKLNEKCASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVKK 247
Query: 77 KKKEEKKQKKKEEKKQKKKEEKKQKKKKEEKKNKKAEE 114
+K + K++ ++ E + NK+
Sbjct: 248 TQKIGTENIATAYDILKQELNGFKEATFENEINKRDNL 285
>d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide
phosphodiesterase 1b, PDE1B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 357
Score = 25.0 bits (54), Expect = 8.6
Identities = 5/45 (11%), Positives = 15/45 (33%)
Query: 18 RKKKKKEEENKKKQKKKEEKKQKKKEEKKQKKKEKKEEKEEKKEK 62
+ + + + + + K +E K++ KE+
Sbjct: 310 KNQPSFQWRQPSLDVEVGDPNPDVVSFRSTWVKRIQENKQKWKER 354
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.301 0.124 0.316
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,181
Number of extensions: 39213
Number of successful extensions: 2253
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1321
Number of HSP's successfully gapped: 636
Length of query: 213
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 131
Effective length of database: 1,281,736
Effective search space: 167907416
Effective search space used: 167907416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.7 bits)
S2: 51 (23.7 bits)