BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy556
(435 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from transposon X-element
OS=Drosophila melanogaster GN=X-element\ORF2 PE=3 SV=1
Length = 908
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 61/218 (27%)
Query: 2 GRRIAVKCNNLISNFKGLENGLVQGSSLSTLLFAVFMNDIFHV-INLPTRGLL--FVDDL 58
GRR AV+ ++ IS + G+ QGS L LL+ ++ +D+ ++L + +L F DD+
Sbjct: 619 GRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLYGKSMLATFADDV 678
Query: 59 LLTIRGK----------------------------------ILEQLGSRNPTLPLIMLNG 84
+T R + + L R P P + +
Sbjct: 679 CVTYRSRCEHDAADGIQDFAYRFSEWARRWNIGINSSKSNNVCFTLKRRTP--PPVYIEE 736
Query: 85 NQLKFDNTAKFLGLIWDRKMSWKQHVK--YTKIKALTA--------------LNALKIVM 128
+ N AK+LG++ DR++++ +HV T+++A A N L I
Sbjct: 737 VPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSNKLTIYK 796
Query: 129 ------LDYGSPIYGSAKDHVIAKLNTEHHIGIRIVTG 160
YG I+G A D I ++ + R++TG
Sbjct: 797 QILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITG 834
>sp|P21329|RTJK_DROFU RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila funebris GN=jockey\pol PE=1 SV=1
Length = 916
Score = 40.4 bits (93), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 110/276 (39%), Gaps = 70/276 (25%)
Query: 2 GRRIAVKCNNLISNFKGLENGLVQGSSLSTLLFAVFMNDIFH---VINLPTRGLL---FV 55
GR+ +V + S+ K +E G+ QGS L L+++F D+ + V L +L +
Sbjct: 621 GRKFSVTADGCRSSVKFIEAGVPQGSVLGPTLYSIFTADMPNQNAVTGLAEGEVLIATYA 680
Query: 56 DDL-LLTIRGKILEQLGSRNPTL-------------------------------PLIMLN 83
DD+ +LT I+E + L P + +N
Sbjct: 681 DDIAVLTKSTCIVEATDALQEYLDAFQEWAVKWNVSINAGKCANVTFTNAIRDCPGVTIN 740
Query: 84 GNQLKFDNTAKFLGLIWDRKMSWKQHV---------KYTKIKALTAL-------NALKIV 127
G+ L + K+LG+I DR +++++H+ + TK+ L A N +KI
Sbjct: 741 GSLLSHTHEYKYLGVILDRSLTFRRHITSLQHSFRTRITKMNWLLAARNKLSLDNKVKIY 800
Query: 128 M------LDYGSPIYGSAKDHVIAKLNTEHHIGIRIVTGALRTSPVPSLYVESGIPPLVI 181
L Y +YG A + K+ +R ++GA + + +P +
Sbjct: 801 KCIVAPGLFYAIQVYGIAARTHLNKIRVLQAKMLRKISGAPWYMRTRDIECDLKVPKIGD 860
Query: 182 RRQKLLLNYVTKISACPSNPVYNILFPTSLRRRLGI 217
+ +++ Y ++ + P SL RRLG+
Sbjct: 861 KIREVAKKYHERLDS----------HPNSLARRLGV 886
>sp|P21328|RTJK_DROME RNA-directed DNA polymerase from mobile element jockey
OS=Drosophila melanogaster GN=pol PE=1 SV=1
Length = 916
Score = 39.7 bits (91), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 58/277 (20%), Positives = 107/277 (38%), Gaps = 76/277 (27%)
Query: 3 RRIAVKCNNLISNFKGLENGLVQGSSLSTLLFAVFMNDI---FHVINLPTRGLL---FVD 56
R V + S+ K + G+ QGS L L++VF +D+ V + +L + D
Sbjct: 622 RTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTHTPVTEVDEEDVLIATYAD 681
Query: 57 DLLLTIRGK--------------ILEQ------------------LGSRNPTLPLIMLNG 84
D + + K +Q +R + P + LNG
Sbjct: 682 DTAVLTKSKSILAATSGLQEYLDAFQQWAENWNVRINAEKCANVTFANRTGSCPGVSLNG 741
Query: 85 NQLKFDNTAKFLGLIWDRKMSWKQHV---------KYTKIKALTA----------LNALK 125
++ K+LG+ DRK+++ +H+ K ++ L A +N K
Sbjct: 742 RLIRHHQAYKYLGITLDRKLTFSRHITNIQQAFRTKVARMSWLIAPRNKLSLGCKVNIYK 801
Query: 126 IVM---LDYGSPIYGSAKDHVIAKLNTEHHIGIRIVTGA---LRTSPVPSLYVESGIPPL 179
++ L YG +YG A + K+ +R ++GA +RT + + +P L
Sbjct: 802 SILAPCLFYGLQVYGIAAKSHLNKIRILQAKTLRRISGAPWYMRTRDIER---DLKVPKL 858
Query: 180 VIRRQKLLLNYVTKISACPSNPVYNILFPTSLRRRLG 216
+ Q + Y+ +++ + P SL R+LG
Sbjct: 859 GDKLQNIAQKYMERLN----------VHPNSLARKLG 885
>sp|Q9UJ99|CAD22_HUMAN Cadherin-22 OS=Homo sapiens GN=CDH22 PE=2 SV=2
Length = 828
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 119 TALNALKIVMLDYGSPIYGSAKDHVIAKLNTEHHIGIRIVTGALRTSPVPSLYVES 174
T + ++++ D P YGS+ V + L+ EHH + TG +RT+ VP L ES
Sbjct: 183 TGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTA-VPDLDRES 237
>sp|Q63315|CAD22_RAT Cadherin-22 OS=Rattus norvegicus GN=Cdh22 PE=1 SV=1
Length = 813
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 119 TALNALKIVMLDYGSPIYGSAKDHVIAKLNTEHHIGIRIVTGALRTSPVPSLYVES 174
T + ++++ D P YGS+ V + L+ EHH + TG +RT+ VP L ES
Sbjct: 180 TGTSVMQVMASDADDPTYGSSARLVYSVLDGEHHFTVDPKTGVIRTA-VPDLDRES 234
>sp|Q03277|PO11_SCICO Retrovirus-related Pol polyprotein from type-1 retrotransposable
element R1 (Fragment) OS=Sciara coprophila PE=4 SV=1
Length = 1004
Score = 35.0 bits (79), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 57/149 (38%), Gaps = 39/149 (26%)
Query: 17 KGLENGLVQGSSLSTLLFAVFMNDIFHVINLPTRGLL---FVDDLLLTIRG---KILEQL 70
K + G QGS ++ + MN++ ++ L G F DD + I LE+L
Sbjct: 599 KDVTRGCPQGSKSGPAMWKLVMNEL--LLALVAAGFFIVAFADDGTIVIGANSRSALEEL 656
Query: 71 GSRNPTL-------------------------------PLIMLNGNQLKFDNTAKFLGLI 99
G+R L P I LNG + + + K LG+
Sbjct: 657 GTRCLQLCHEWGKRVCVPVSAGKTTCILMKGHLSANRPPCIRLNGTSISYKSEVKHLGIF 716
Query: 100 WDRKMSWKQHVKYTKIKALTALNALKIVM 128
+M+++ H Y + K L + L+ VM
Sbjct: 717 VAERMNFRPHFVYLRGKILGLVGCLRRVM 745
>sp|Q9WTP5|CAD22_MOUSE Cadherin-22 OS=Mus musculus GN=Cdh22 PE=2 SV=1
Length = 813
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 119 TALNALKIVMLDYGSPIYGSAKDHVIAKLNTEHHIGIRIVTGALRTSPVPSLYVES 174
T + ++++ D P YG + V + L+ EHH + TG +RT+ VP L ES
Sbjct: 180 TGTSVMQVMASDADDPTYGRSARLVYSVLDGEHHFTVDPKTGVIRTA-VPDLDRES 234
>sp|Q8C8H8|KY_MOUSE Kyphoscoliosis peptidase OS=Mus musculus GN=Ky PE=1 SV=1
Length = 661
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 37 FMNDIFHVINLPTRGLLFVD---DLLLTIRGKILEQLGSRNPTLPLIMLNGNQ 86
F N ++H +G+L ++ T+ GK + SR PTL + MLNG Q
Sbjct: 336 FENSMYHKSEFYNKGMLSAHPETSMIRTVNGKATITIESRAPTLFMFMLNGKQ 388
>sp|Q2Y8K1|RNH_NITMU Ribonuclease H OS=Nitrosospira multiformis (strain ATCC 25196 /
NCIMB 11849) GN=rnhA PE=3 SV=1
Length = 155
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 265 DLWR--NLTSNNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLWR +L + K+ ++W H G +GNE D ANR
Sbjct: 106 DLWRELDLLTQRHKIEWLWVRGHSGHDGNEYADMLANR 143
>sp|Q3KE77|RNH_PSEPF Ribonuclease H OS=Pseudomonas fluorescens (strain Pf0-1) GN=rnhA
PE=3 SV=1
Length = 153
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L N K+T+ W H G GNE D+ ANR
Sbjct: 105 DLWKALDEQVNRHKVTWKWVRGHIGHHGNERADQLANR 142
>sp|B1JBN1|RNH_PSEPW Ribonuclease H OS=Pseudomonas putida (strain W619) GN=rnhA PE=3
SV=1
Length = 148
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L N K+T+ W H G GNE D+ ANR
Sbjct: 102 DLWQQLDEQVNRHKVTWKWVRGHIGHPGNERADQLANR 139
>sp|Q88FF5|RNH_PSEPK Ribonuclease HI OS=Pseudomonas putida (strain KT2440) GN=rnhA PE=3
SV=1
Length = 148
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L N K+T+ W H G GNE D+ ANR
Sbjct: 102 DLWQQLDEQVNRHKVTWKWVRGHIGHPGNERADQLANR 139
>sp|B0KN00|RNH_PSEPG Ribonuclease H OS=Pseudomonas putida (strain GB-1) GN=rnhA PE=3
SV=1
Length = 148
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L N K+T+ W H G GNE D+ ANR
Sbjct: 102 DLWQQLDEQVNRHKVTWKWVRGHIGHPGNERADQLANR 139
>sp|A5W169|RNH_PSEP1 Ribonuclease H OS=Pseudomonas putida (strain F1 / ATCC 700007)
GN=rnhA PE=3 SV=1
Length = 148
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L N K+T+ W H G GNE D+ ANR
Sbjct: 102 DLWQQLDEQVNRHKVTWKWVRGHIGHPGNERADQLANR 139
>sp|B0TZ91|RNH_FRAP2 Ribonuclease H OS=Francisella philomiragia subsp. philomiragia
(strain ATCC 25017) GN=rnhA PE=3 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTSNNIK--LTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S K +T+ W H G +GNE+ D AN+
Sbjct: 107 DLWQELDSLTTKHNVTWSWVKGHSGNQGNEKADELANK 144
>sp|A4IYE6|RNH_FRATW Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
WY96-3418) GN=rnhA PE=3 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S N +T+ W H G GNE+ D AN+
Sbjct: 107 DLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANK 144
>sp|Q0BMB7|RNH_FRATO Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
OSU18) GN=rnhA PE=3 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S N +T+ W H G GNE+ D AN+
Sbjct: 107 DLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANK 144
>sp|A0Q6W0|RNH_FRATN Ribonuclease H OS=Francisella tularensis subsp. novicida (strain
U112) GN=rnhA PE=3 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S N +T+ W H G GNE+ D AN+
Sbjct: 107 DLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANK 144
>sp|B2SFV9|RNH_FRATM Ribonuclease H OS=Francisella tularensis subsp. mediasiatica
(strain FSC147) GN=rnhA PE=3 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S N +T+ W H G GNE+ D AN+
Sbjct: 107 DLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANK 144
>sp|Q2A3X6|RNH_FRATH Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
LVS) GN=rnhA PE=3 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S N +T+ W H G GNE+ D AN+
Sbjct: 107 DLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANK 144
>sp|A7NBM9|RNH_FRATF Ribonuclease H OS=Francisella tularensis subsp. holarctica (strain
FTNF002-00 / FTA) GN=rnhA PE=3 SV=1
Length = 152
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S N +T+ W H G GNE+ D AN+
Sbjct: 107 DLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANK 144
>sp|Q14IN1|RNH_FRAT1 Ribonuclease H OS=Francisella tularensis subsp. tularensis (strain
FSC 198) GN=rnhA PE=3 SV=2
Length = 152
Score = 33.5 bits (75), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L S N +T+ W H G GNE+ D AN+
Sbjct: 107 DLWQELDSLTNKHNVTWGWVKGHSGNAGNEKADELANK 144
>sp|B1MW88|ATPD_LEUCK ATP synthase subunit delta OS=Leuconostoc citreum (strain KM20)
GN=atpH PE=3 SV=1
Length = 180
Score = 32.7 bits (73), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 248 EYKDLTPPWSDDMSEVIDLWRNLTSNNIKLTFIWCPSHCGIEGNEEVDRAANRDGHTQAI 307
+Y S + V D ++L + +K+ F P+ I + +++ A RDG +
Sbjct: 11 QYAKAIFELSSEQGNVEDTRKDL--DTLKVVFENNPNFVTIVSSNDINSEA-RDGLLTTL 67
Query: 308 NICSPDDLKTMVKKLAYNN-----WQVLWNQTDPLNKLKQIKPIISTWKTSQQSRRYDE- 361
+ + ++ +VK LAYNN Q++ + D N I +++T + R D+
Sbjct: 68 TTGASEAIQNLVKLLAYNNRLNLLTQIVTSFEDYYNDAHGIVNVVATTAVALDETRLDKL 127
Query: 362 --VVLSRLRIGHTRVTHS 377
V S+ H +T++
Sbjct: 128 AAVFASKTGAKHVNLTNN 145
>sp|B7GFT5|PUR7_ANOFW Phosphoribosylaminoimidazole-succinocarboxamide synthase
OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1)
GN=purC PE=3 SV=1
Length = 240
Score = 32.3 bits (72), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 14/125 (11%)
Query: 107 KQHVKYT-KIKALTALNALKIVMLDY---GSPIYGSAKDHVIAKLNTEHHIGIRIVTGAL 162
KQ++ Y K K + A N ++ ++Y + G K ++ K + I
Sbjct: 3 KQYLLYEGKAKKVYATNEKHVLWIEYKDEATAFNGEKKATIVGKGRLNNEI--------- 53
Query: 163 RTSPVPSLYVESGIPPLVIRRQKLLLNYVTKISACPSNPVYNILFPTSLRRRLGIYEFTR 222
TS + SL E+G+ IR+ V +++ P V + SL +R+G+ E T
Sbjct: 54 -TSLLFSLLHEAGVSNHFIRKISDTEQLVRQVTIIPLEVVVRNIVAGSLAKRIGLEEGTV 112
Query: 223 TPKPL 227
KP+
Sbjct: 113 MKKPI 117
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 276 KLTFIWCPSHCGIEGNEEVDRAANRDGHTQAINICSPDDLKTMVKKLAYNNWQVL 330
K+ W P+H GI GNE+VD+ ++ G + + + D + +K +NNW+ +
Sbjct: 1114 KVYLAWVPAHKGIGGNEQVDKLVSQ-GIRKVLFLDGIDKAQEEHEKY-HNNWRAM 1166
>sp|P04589|POL_HV1EL Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate ELI) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 276 KLTFIWCPSHCGIEGNEEVDRAANRDGHTQAINICSPDDLKTMVKKLAYNNWQVL 330
K+ W P+H GI GNE+VD+ ++ G + + + D + +K +NNW+ +
Sbjct: 1117 KVYLAWVPAHKGIGGNEQVDKLVSQ-GIRKVLFLDGIDKAQEEHEKY-HNNWRAM 1169
>sp|P12499|POL_HV1Z2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate Z2/CDC-Z34) GN=gag-pol PE=1 SV=3
Length = 1436
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 276 KLTFIWCPSHCGIEGNEEVDRAANRDGHTQAINICSPDDLKTMVKKLAYNNWQVL 330
K+ W P+H GI GNE+VD+ ++ G + + + D + +K +NNW+ +
Sbjct: 1118 KVYLAWVPAHKGIGGNEQVDKLVSQ-GIRKVLFLDGIDKAQEEHEKY-HNNWRAM 1170
>sp|Q4KBI1|RNH_PSEF5 Ribonuclease H OS=Pseudomonas fluorescens (strain Pf-5 / ATCC
BAA-477) GN=rnhA PE=3 SV=1
Length = 150
Score = 32.3 bits (72), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 265 DLWRNLTS--NNIKLTFIWCPSHCGIEGNEEVDRAANR 300
DLW+ L N +T+ W H G GNE D+ ANR
Sbjct: 102 DLWQQLDEQVNRHNVTWKWVRGHTGHHGNERADQLANR 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 162,458,582
Number of Sequences: 539616
Number of extensions: 6805059
Number of successful extensions: 13785
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 13771
Number of HSP's gapped (non-prelim): 45
length of query: 435
length of database: 191,569,459
effective HSP length: 120
effective length of query: 315
effective length of database: 126,815,539
effective search space: 39946894785
effective search space used: 39946894785
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)