Query psy556
Match_columns 435
No_of_seqs 218 out of 2032
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 20:38:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy556.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/556hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mu2_A HIV-2 RT; HIV-2 reverse 99.4 1.2E-13 4.2E-18 143.7 7.3 84 20-103 146-237 (555)
2 2zd1_A Reverse transcriptase/r 99.4 4E-13 1.4E-17 139.9 9.9 84 20-103 148-239 (557)
3 3h08_A RNH (ribonuclease H); R 99.3 1.1E-12 3.6E-17 112.4 3.4 61 243-303 41-143 (146)
4 3qio_A GAG-POL polyprotein; RN 99.3 1.5E-12 5E-17 111.8 4.2 63 242-304 45-147 (150)
5 1jl1_A Ribonuclease HI; RNAse 99.3 1.9E-12 6.4E-17 112.0 3.6 65 243-307 41-146 (155)
6 2qkb_A Ribonuclease H1, HS-RNA 99.2 4.4E-12 1.5E-16 109.5 5.3 63 243-305 47-152 (154)
7 3p1g_A Xenotropic murine leuke 99.2 3.8E-12 1.3E-16 110.8 4.1 64 242-305 59-157 (165)
8 2e4l_A Ribonuclease HI, RNAse 99.2 3.1E-12 1.1E-16 110.9 3.4 62 243-304 43-145 (158)
9 1ril_A Ribonuclease H; hydrola 99.2 5.2E-12 1.8E-16 110.3 2.2 63 243-305 45-149 (166)
10 2lsn_A Reverse transcriptase; 99.0 3.7E-10 1.3E-14 98.1 4.5 51 253-303 78-162 (165)
11 2kq2_A Ribonuclease H-related 98.9 1.9E-10 6.5E-15 98.3 0.3 62 244-305 48-138 (147)
12 3kyl_A Telomerase reverse tran 98.6 1.5E-08 5.2E-13 100.1 4.2 93 7-103 293-397 (596)
13 3hst_B Protein RV2228C/MT2287; 98.5 4E-08 1.4E-12 83.0 4.0 57 243-303 43-132 (141)
14 3u3g_D Ribonuclease H, RNAse H 98.4 8.7E-08 3E-12 80.6 3.1 46 254-303 73-136 (140)
15 2ehg_A Ribonuclease HI; RNAse 98.1 1.5E-06 5.1E-11 74.1 4.1 58 243-304 45-134 (149)
16 3fsi_A RT, reverse transcripta 96.7 0.00056 1.9E-08 63.4 2.2 81 21-103 163-253 (255)
17 2zd1_B P51 RT; P51/P66, hetero 96.4 0.00086 2.9E-08 67.0 1.8 84 20-103 146-237 (428)
18 1rw3_A POL polyprotein; RNA an 95.5 0.0053 1.8E-07 61.8 2.7 81 21-103 167-257 (455)
19 1zbf_A Ribonuclease H-related 85.5 0.082 2.8E-06 44.0 -1.8 48 248-295 55-138 (142)
20 4htu_A Ribonuclease H, RNAse H 74.0 0.8 2.7E-05 37.5 0.5 20 248-267 49-81 (134)
21 1xr5_A Genome polyprotein; RNA 47.1 14 0.00049 36.7 4.1 51 15-65 277-336 (466)
22 1ra6_A P3D, genome polyprotein 45.0 26 0.00091 34.7 5.6 56 7-65 273-337 (461)
23 3alr_A Nanos protein; zinc-fin 35.3 13 0.00045 28.4 1.2 28 386-413 72-100 (106)
24 3uqs_A RNA-dependent RNA polym 33.2 34 0.0012 34.4 4.3 56 7-65 285-352 (515)
No 1
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.42 E-value=1.2e-13 Score=143.68 Aligned_cols=84 Identities=15% Similarity=0.086 Sum_probs=56.9
Q ss_pred cCCCCCCCchhHHHHHHHHHhhhhhcC---CCcceeeeccceeEEEecCCHhHhh-----ccCCCCCceEeCCeeeeccC
Q psy556 20 ENGLVQGSSLSTLLFAVFMNDIFHVIN---LPTRGLLFVDDLLLTIRGKILEQLG-----SRNPTLPLIMLNGNQLKFDN 91 (435)
Q Consensus 20 ~~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~l~-----k~~~~~~~~~l~~~~I~~~~ 91 (435)
...+|||-.-||.+|.-+|+.++..+. +++.+..|.||+.|.+.....+.+. ...+....+.++..+...++
T Consensus 146 ~~~mPfGl~napa~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~~~K~~~~~ 225 (555)
T 1mu2_A 146 YKVLPQGWKGSPAIFQHTMRQVLEPFRKANKDVIIIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDP 225 (555)
T ss_dssp ESBCCTTCTTHHHHHHHHHHHHHHHHHHHCTTSEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHTTCBCCSTTEECSS
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHHHHHhhCCCcEEEEEecceEEecCCCHHHHHHHHHHHHHHHHHcCCccCHHHhccCC
Confidence 457899999999999999999998743 4667899999999986522222111 11111223344434444577
Q ss_pred cceeeceeecCc
Q psy556 92 TAKFLGLIWDRK 103 (435)
Q Consensus 92 ~~kyLGv~ld~~ 103 (435)
+++|||..++.+
T Consensus 226 ~~~fLG~~i~~~ 237 (555)
T 1mu2_A 226 PYHWMGYELWPT 237 (555)
T ss_dssp SEEETTEEECSS
T ss_pred ceeEEeEEEeCC
Confidence 899999998764
No 2
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.41 E-value=4e-13 Score=139.93 Aligned_cols=84 Identities=15% Similarity=0.063 Sum_probs=56.5
Q ss_pred cCCCCCCCchhHHHHHHHHHhhhhhcC---CCcceeeeccceeEEEecCCHhHhh-----ccCCCCCceEeCCeeeeccC
Q psy556 20 ENGLVQGSSLSTLLFAVFMNDIFHVIN---LPTRGLLFVDDLLLTIRGKILEQLG-----SRNPTLPLIMLNGNQLKFDN 91 (435)
Q Consensus 20 ~~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~l~-----k~~~~~~~~~l~~~~I~~~~ 91 (435)
-..+|||-.-||.+|.-+|+.++..+. +++.+..|.||+.+.+.....+.+. ...+....+.++..+.....
T Consensus 148 ~~~mPfGl~nap~~fq~~m~~il~~~~~~~~~~~v~~Y~DDIli~s~~~~~eh~~~l~~v~~~l~~~gl~l~~~Kc~f~~ 227 (557)
T 2zd1_A 148 YNVLPQGWKGSPAIFQSSMTKILEPFAAQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEP 227 (557)
T ss_dssp ESBCCTTCTTHHHHHHHHHHHHHHHHHHTCTTEEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHTTTCCCCCSCCSCCS
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHHhhhcCCCceEEEEecCEEEecCchHHHHHHHHHHHHHHHHHcCCccChhhcCCCC
Confidence 457899999999999999999998742 4566899999999987532222111 11111223444444444456
Q ss_pred cceeeceeecCc
Q psy556 92 TAKFLGLIWDRK 103 (435)
Q Consensus 92 ~~kyLGv~ld~~ 103 (435)
+++|||..++.+
T Consensus 228 ~~~fLG~~i~~~ 239 (557)
T 2zd1_A 228 PFLWMGYELHPD 239 (557)
T ss_dssp SEEETTEEECSS
T ss_pred ceEEeeEEEccC
Confidence 788999998764
No 3
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.28 E-value=1.1e-12 Score=112.40 Aligned_cols=61 Identities=18% Similarity=0.066 Sum_probs=48.4
Q ss_pred CCChh--hhhcc------------cccccCCHHHHHHhhccC---------------CCCC-------------ceEEEE
Q psy556 243 RCDMM--EYKDL------------TPPWSDDMSEVIDLWRNL---------------TSNN-------------IKLTFI 280 (435)
Q Consensus 243 ~~~v~--El~ai------------~~i~sDs~sa~~~l~~~~---------------~~~~-------------i~v~~~ 280 (435)
.+|.. |+.|+ +.|+|||+++++.|.... +... +.|.|.
T Consensus 41 ~~Tnn~aEl~A~~~AL~~~~~~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~~v~~~ 120 (146)
T 3h08_A 41 ATTNNRMELMAAIKGLEALKEPARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLHRVTFH 120 (146)
T ss_dssp EECHHHHHHHHHHHHHHTCSSCCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHSEEEEE
T ss_pred CCcHHHHHHHHHHHHHHhcCccCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhCceEEE
Confidence 34554 88888 789999999999997621 1111 289999
Q ss_pred EecccCCCCcchHHhHHHhhccC
Q psy556 281 WCPSHCGIEGNEEVDRAANRDGH 303 (435)
Q Consensus 281 Wvp~H~gi~gNe~AD~~Ak~a~~ 303 (435)
|||||+|++|||.||+|||+|+.
T Consensus 121 ~V~gH~g~~~N~~AD~LA~~a~~ 143 (146)
T 3h08_A 121 KVKGHSDNPYNSRADELARLAIK 143 (146)
T ss_dssp ECCC-CCSHHHHHHHHHHHHHHH
T ss_pred EcCCcCCcHhHHHHHHHHHHHHH
Confidence 99999999999999999999974
No 4
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.28 E-value=1.5e-12 Score=111.79 Aligned_cols=63 Identities=22% Similarity=0.293 Sum_probs=50.5
Q ss_pred CCCChh--hhhcc----------cccccCCHHHHHHhhcc-----------CCC---CC--------------ceEEEEE
Q psy556 242 DRCDMM--EYKDL----------TPPWSDDMSEVIDLWRN-----------LTS---NN--------------IKLTFIW 281 (435)
Q Consensus 242 ~~~~v~--El~ai----------~~i~sDs~sa~~~l~~~-----------~~~---~~--------------i~v~~~W 281 (435)
..+|.. |+.|+ +.|+|||+++++.+... ... .. ..|.|.|
T Consensus 45 ~~~Tnn~aEl~A~i~AL~~~~~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~w 124 (150)
T 3qio_A 45 TDTTNQKTELQAIYLALQDSGLEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAW 124 (150)
T ss_dssp SSCCHHHHHHHHHHHHHHHSCSEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEE
Confidence 455655 99988 78999999999999653 011 11 2899999
Q ss_pred ecccCCCCcchHHhHHHhhccCC
Q psy556 282 CPSHCGIEGNEEVDRAANRDGHT 304 (435)
Q Consensus 282 vp~H~gi~gNe~AD~~Ak~a~~~ 304 (435)
||||+|++|||.||++|++|+..
T Consensus 125 V~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 125 VPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp CCTTSCCHHHHHHHHHHHTTTSC
T ss_pred ccCcCCChhHHHHHHHHHHHHHH
Confidence 99999999999999999999864
No 5
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.26 E-value=1.9e-12 Score=111.96 Aligned_cols=65 Identities=17% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCChh--hhhcc------------cccccCCHHHHHHhhc--------c-CCCCC------------------ceEEEEE
Q psy556 243 RCDMM--EYKDL------------TPPWSDDMSEVIDLWR--------N-LTSNN------------------IKLTFIW 281 (435)
Q Consensus 243 ~~~v~--El~ai------------~~i~sDs~sa~~~l~~--------~-~~~~~------------------i~v~~~W 281 (435)
.+|.. |+.|+ +.|+|||+++++.|.. . ...++ ..|.|.|
T Consensus 41 ~~tn~~aEl~A~~~aL~~~~~~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~w 120 (155)
T 1jl1_A 41 RTTNNRMELMAAIVALEALKEHAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEW 120 (155)
T ss_dssp EECHHHHHHHHHHHHHHTCCSCCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcHHHHHHHHHHHHHHHhCcCCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHccCceEEEE
Confidence 34555 98888 6899999999999975 2 11111 2899999
Q ss_pred ecccCCCCcchHHhHHHhhccCCCCC
Q psy556 282 CPSHCGIEGNEEVDRAANRDGHTQAI 307 (435)
Q Consensus 282 vp~H~gi~gNe~AD~~Ak~a~~~~~~ 307 (435)
||||+|++|||.||+|||+|+..+.+
T Consensus 121 V~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 121 VKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp CCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred cCCCCCCHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999987643
No 6
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.25 E-value=4.4e-12 Score=109.51 Aligned_cols=63 Identities=24% Similarity=0.353 Sum_probs=51.4
Q ss_pred CCChh--hhhcc--------------cccccCCHHHHHHhhcc--------C-CCCC------------------ceEEE
Q psy556 243 RCDMM--EYKDL--------------TPPWSDDMSEVIDLWRN--------L-TSNN------------------IKLTF 279 (435)
Q Consensus 243 ~~~v~--El~ai--------------~~i~sDs~sa~~~l~~~--------~-~~~~------------------i~v~~ 279 (435)
.+|.+ |+.|+ +.|+|||+++++.|... + ..++ +.|.|
T Consensus 47 ~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~~v~~ 126 (154)
T 2qkb_A 47 RQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGMDIQW 126 (154)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTCEEEE
T ss_pred CCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCCceEE
Confidence 45666 98888 78999999999999651 1 1111 28999
Q ss_pred EEecccCCCCcchHHhHHHhhccCCC
Q psy556 280 IWCPSHCGIEGNEEVDRAANRDGHTQ 305 (435)
Q Consensus 280 ~Wvp~H~gi~gNe~AD~~Ak~a~~~~ 305 (435)
.|||||+|++|||.||+|||+|+..+
T Consensus 127 ~~V~~H~g~~~N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 127 MHVPGHSGFIGNEEADRLAREGAKQS 152 (154)
T ss_dssp EECCTTSSCHHHHHHHHHHHHHHTCC
T ss_pred EEccCCCCCHhHHHHHHHHHHHHHhc
Confidence 99999999999999999999998754
No 7
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.23 E-value=3.8e-12 Score=110.80 Aligned_cols=64 Identities=20% Similarity=0.276 Sum_probs=51.5
Q ss_pred CCCChh--hhhcc-----------cccccCCHHHHHHhhccCCCCC-----------------ceEEEEEecccCC----
Q psy556 242 DRCDMM--EYKDL-----------TPPWSDDMSEVIDLWRNLTSNN-----------------IKLTFIWCPSHCG---- 287 (435)
Q Consensus 242 ~~~~v~--El~ai-----------~~i~sDs~sa~~~l~~~~~~~~-----------------i~v~~~Wvp~H~g---- 287 (435)
..+|.. |+.|+ +.|+|||+++++.+........ .+|.|.|||||+|
T Consensus 59 ~~~Tnn~aEl~Ai~~AL~~~~~~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~ 138 (165)
T 3p1g_A 59 AGTSAQRAELIALTQALKMAEGKKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSA 138 (165)
T ss_dssp TTCCHHHHHHHHHHHHHHHTBTSEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSH
T ss_pred CCCcHHHHHHHHHHHHHHHccCceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcC
Confidence 455666 99988 7899999999999943222111 2899999999999
Q ss_pred -CCcchHHhHHHhhccCCC
Q psy556 288 -IEGNEEVDRAANRDGHTQ 305 (435)
Q Consensus 288 -i~gNe~AD~~Ak~a~~~~ 305 (435)
++|||+||++||+|+..+
T Consensus 139 ~~~gNe~AD~LA~~aa~~~ 157 (165)
T 3p1g_A 139 EARGNRMADQAAREAAMKA 157 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcC
Confidence 999999999999998653
No 8
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.23 E-value=3.1e-12 Score=110.90 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCChh--hhhcc------------cccccCCHHHHHHhhc--------cC-CCCC------------------ceEEEEE
Q psy556 243 RCDMM--EYKDL------------TPPWSDDMSEVIDLWR--------NL-TSNN------------------IKLTFIW 281 (435)
Q Consensus 243 ~~~v~--El~ai------------~~i~sDs~sa~~~l~~--------~~-~~~~------------------i~v~~~W 281 (435)
.+|.. |+.|+ +.|+|||+++++.|.. .. ..++ ..|.|.|
T Consensus 43 ~~tn~~aEl~A~~~AL~~~~~~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~~v~~~w 122 (158)
T 2e4l_A 43 LTTNNRMELLAPIVALEALKEPCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLHQIDWRW 122 (158)
T ss_dssp EECHHHHHHHHHHHHHHTCSSCCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTSEEEEEE
T ss_pred CCccHHHHHHHHHHHHHHhccCCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHccCcEEEEE
Confidence 35555 98888 6899999999999976 22 1111 2899999
Q ss_pred ecccCCCCcchHHhHHHhhccCC
Q psy556 282 CPSHCGIEGNEEVDRAANRDGHT 304 (435)
Q Consensus 282 vp~H~gi~gNe~AD~~Ak~a~~~ 304 (435)
||||+|++|||.||+|||+|+..
T Consensus 123 V~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 123 VKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp CCTTCCCHHHHHHHHHHHHHHHS
T ss_pred ccCCCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999876
No 9
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.17 E-value=5.2e-12 Score=110.34 Aligned_cols=63 Identities=24% Similarity=0.254 Sum_probs=51.7
Q ss_pred CCChh--hhhcc------------cccccCCHHHHHHhhc----------cCCCCC------------------ceEEEE
Q psy556 243 RCDMM--EYKDL------------TPPWSDDMSEVIDLWR----------NLTSNN------------------IKLTFI 280 (435)
Q Consensus 243 ~~~v~--El~ai------------~~i~sDs~sa~~~l~~----------~~~~~~------------------i~v~~~ 280 (435)
.+|.. |+.|+ +.|+|||+++++.|.. ....++ ..|.|.
T Consensus 45 ~~Tnn~aEl~Ai~~AL~~~~~~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~~v~~~ 124 (166)
T 1ril_A 45 CTTNNRMELKAAIEGLKALKEPCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPHRVRFH 124 (166)
T ss_dssp EECHHHHHHHHHHHHHHSCCSCCEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTSEEECC
T ss_pred CCcHHHHHHHHHHHHHHHhccCCeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcCeEEEE
Confidence 34555 98888 7899999999999987 122222 279999
Q ss_pred EecccCCCCcchHHhHHHhhccCCC
Q psy556 281 WCPSHCGIEGNEEVDRAANRDGHTQ 305 (435)
Q Consensus 281 Wvp~H~gi~gNe~AD~~Ak~a~~~~ 305 (435)
|||||+|++|||.||+|||+|+...
T Consensus 125 wV~gH~g~~~Ne~AD~LAk~a~~~~ 149 (166)
T 1ril_A 125 FVKGHTGHPENERVDREARRQAQSQ 149 (166)
T ss_dssp CCCGGGSCTHHHHHHHHHHHHHTSS
T ss_pred EeeCCCCchhHHHHHHHHHHHHHHh
Confidence 9999999999999999999999775
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=98.95 E-value=3.7e-10 Score=98.07 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=40.5
Q ss_pred cccccCCHHHHHHhhc--------cCCC-CC-------------------ceEEEEEecccCCC------CcchHHhHHH
Q psy556 253 TPPWSDDMSEVIDLWR--------NLTS-NN-------------------IKLTFIWCPSHCGI------EGNEEVDRAA 298 (435)
Q Consensus 253 ~~i~sDs~sa~~~l~~--------~~~~-~~-------------------i~v~~~Wvp~H~gi------~gNe~AD~~A 298 (435)
+.|+|||+++++.+.. .+.. ++ ..|.|.|||||+|+ +|||+||+||
T Consensus 78 v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA 157 (165)
T 2lsn_A 78 VLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLA 157 (165)
T ss_dssp EEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHH
T ss_pred EEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHH
Confidence 6899999999999943 2111 11 17999999999996 4899999999
Q ss_pred hhccC
Q psy556 299 NRDGH 303 (435)
Q Consensus 299 k~a~~ 303 (435)
++|+.
T Consensus 158 ~~gA~ 162 (165)
T 2lsn_A 158 TQGSY 162 (165)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 99873
No 11
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=98.89 E-value=1.9e-10 Score=98.32 Aligned_cols=62 Identities=18% Similarity=0.031 Sum_probs=50.3
Q ss_pred CChh--hhhcc-------------cccccCCHHHHHHhhccCCCCC------------c--eEEEEEecccCCCCcchHH
Q psy556 244 CDMM--EYKDL-------------TPPWSDDMSEVIDLWRNLTSNN------------I--KLTFIWCPSHCGIEGNEEV 294 (435)
Q Consensus 244 ~~v~--El~ai-------------~~i~sDs~sa~~~l~~~~~~~~------------i--~v~~~Wvp~H~gi~gNe~A 294 (435)
+|++ |+.|+ +.|++||+++..-+.+.+..+. + .|.|.|||||+|++|||+|
T Consensus 48 ~tNn~aEl~A~~~AL~~a~~~~~~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV~gH~g~~~Ne~A 127 (147)
T 2kq2_A 48 MRNVAGEIAAALYAVKKASQLGVKIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKVKAHSGNEFNDYV 127 (147)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHTCCCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCCCCCCCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCeEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEecCcCCCcchHHH
Confidence 3555 98888 7899999987776665443332 1 6999999999999999999
Q ss_pred hHHHhhccCCC
Q psy556 295 DRAANRDGHTQ 305 (435)
Q Consensus 295 D~~Ak~a~~~~ 305 (435)
|+|||+|+..+
T Consensus 128 D~LA~~a~~~~ 138 (147)
T 2kq2_A 128 DMKAKSALGIR 138 (147)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHHhcc
Confidence 99999999775
No 12
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A
Probab=98.62 E-value=1.5e-08 Score=100.08 Aligned_cols=93 Identities=19% Similarity=0.136 Sum_probs=60.2
Q ss_pred EEECCccccceeccCCCCCCCchhHHHHHHHHHhhhhhc----CCCcceeeeccceeEEEecCCHhHhh----c----cC
Q psy556 7 VKCNNLISNFKGLENGLVQGSSLSTLLFAVFMNDIFHVI----NLPTRGLLFVDDLLLTIRGKILEQLG----S----RN 74 (435)
Q Consensus 7 v~~~g~~s~~~~i~~GvpQGs~LSP~Lf~l~~~~l~~~~----~~~~~~~~yADD~~i~~~~~~~~~l~----k----~~ 74 (435)
|.++|. ...-+.|+|||++|||+|-|+|++++.+.+ ..+..++-||||.++++......+.. + .+
T Consensus 293 V~igGk---~y~qekGTPQGGVISPLLANIYLheLDkel~~~l~kd~~LVRYADDFVIi~~Ske~Aerfl~~Lkg~leLN 369 (596)
T 3kyl_A 293 VAFRRK---IYKWNHGLLQGDPLSGCLCELYMAFMDRLYFSNLDKDAFIHRTVDDYFFCSPHPHKVYDFELLIKGVYQVN 369 (596)
T ss_dssp EESSSS---EEEECSSSCBTCTTHHHHHHHHHHHHHHHHSTTSCTTSEEEECSSEEEEEESCHHHHHHHHHHHHHHSCEE
T ss_pred EEECCE---EEecCCcccCCcchhHHHHHHHHHHHHHHHHHhhccCceEEEEcCcEEEEECCHHHHHHHHHHhhCcceEC
Confidence 444553 345678999999999999999999998774 24667899999999998765443211 0 00
Q ss_pred CCCCceEeCCeeeeccCcceeeceeecCc
Q psy556 75 PTLPLIMLNGNQLKFDNTAKFLGLIWDRK 103 (435)
Q Consensus 75 ~~~~~~~l~~~~I~~~~~~kyLGv~ld~~ 103 (435)
.....+......+ +...+.|+|+.||.+
T Consensus 370 pEKTrInF~~~~l-p~~~fpwCGLLIDtk 397 (596)
T 3kyl_A 370 PTKTRTNLPTHRH-PQDEIPYCGKIFNLT 397 (596)
T ss_dssp EEEEEECCTTSSS-CCSEEEETTEEEETT
T ss_pred chhceeecccccC-CCceeeeeeEEEECC
Confidence 0000111111111 236689999999875
No 13
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=98.54 E-value=4e-08 Score=82.96 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=46.3
Q ss_pred CCChh--hhhcc--------------cccccCCHHHHHHhhccCCCCC-----------------ceEEEEEecccCCCC
Q psy556 243 RCDMM--EYKDL--------------TPPWSDDMSEVIDLWRNLTSNN-----------------IKLTFIWCPSHCGIE 289 (435)
Q Consensus 243 ~~~v~--El~ai--------------~~i~sDs~sa~~~l~~~~~~~~-----------------i~v~~~Wvp~H~gi~ 289 (435)
.+|.. |+.|+ +.|++||+.+++.+.+.+.... ..|.|.|||+ +
T Consensus 43 ~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~ 118 (141)
T 3hst_B 43 RATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----A 118 (141)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----G
T ss_pred CCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----c
Confidence 44555 88888 7899999999999987543322 2799999996 8
Q ss_pred cchHHhHHHhhccC
Q psy556 290 GNEEVDRAANRDGH 303 (435)
Q Consensus 290 gNe~AD~~Ak~a~~ 303 (435)
+||.||++||+|+.
T Consensus 119 ~N~~AD~LA~~a~~ 132 (141)
T 3hst_B 119 RNTYADRLANDAMD 132 (141)
T ss_dssp GCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 99999999999864
No 14
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=98.42 E-value=8.7e-08 Score=80.61 Aligned_cols=46 Identities=20% Similarity=0.155 Sum_probs=38.0
Q ss_pred ccccCCHHHHHHhhccCCCCC------------------ceEEEEEecccCCCCcchHHhHHHhhccC
Q psy556 254 PPWSDDMSEVIDLWRNLTSNN------------------IKLTFIWCPSHCGIEGNEEVDRAANRDGH 303 (435)
Q Consensus 254 ~i~sDs~sa~~~l~~~~~~~~------------------i~v~~~Wvp~H~gi~gNe~AD~~Ak~a~~ 303 (435)
.|++||+++++.+.+...... ..|.|.|||. ++||.||++||+|+.
T Consensus 73 ~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a~~ 136 (140)
T 3u3g_D 73 EVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEAID 136 (140)
T ss_dssp EEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHHHH
T ss_pred EEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHHHH
Confidence 599999999999987654222 1799999995 899999999999863
No 15
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=98.12 E-value=1.5e-06 Score=74.06 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=47.0
Q ss_pred CCChh--hhhcc--------------cccccCCHHHHHHhhccCCCC-C---------------ceEEEEEecccCCCCc
Q psy556 243 RCDMM--EYKDL--------------TPPWSDDMSEVIDLWRNLTSN-N---------------IKLTFIWCPSHCGIEG 290 (435)
Q Consensus 243 ~~~v~--El~ai--------------~~i~sDs~sa~~~l~~~~~~~-~---------------i~v~~~Wvp~H~gi~g 290 (435)
.+|.. |+.|+ +.|++||+.+++.+.+....+ + ..|.|.|||+ .+
T Consensus 45 ~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~~v~~~~V~~----~~ 120 (149)
T 2ehg_A 45 NSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKLNATLIWVPR----EE 120 (149)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHHTCEEEECCG----GG
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcCCEEEEEcCC----cc
Confidence 45665 98887 789999999999998864432 2 1699999999 48
Q ss_pred chHHhHHHhhccCC
Q psy556 291 NEEVDRAANRDGHT 304 (435)
Q Consensus 291 Ne~AD~~Ak~a~~~ 304 (435)
||.||++||+|+..
T Consensus 121 N~~AD~LA~~a~~~ 134 (149)
T 2ehg_A 121 NKEADRLSRVAYEL 134 (149)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHh
Confidence 99999999998743
No 16
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ...
Probab=96.69 E-value=0.00056 Score=63.42 Aligned_cols=81 Identities=20% Similarity=0.146 Sum_probs=53.8
Q ss_pred CCCCCCCchhHHHHHHHHHhhhhhcC---CCcceeeeccceeEEEecCCHhHhh------ccCCCCCceEeCCeeeec-c
Q psy556 21 NGLVQGSSLSTLLFAVFMNDIFHVIN---LPTRGLLFVDDLLLTIRGKILEQLG------SRNPTLPLIMLNGNQLKF-D 90 (435)
Q Consensus 21 ~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~l~------k~~~~~~~~~l~~~~I~~-~ 90 (435)
.-+|||-.-||.+|+-+|+.+++.+. .++.+..|+||+.+.+. +.++.. ...+....+.++..+... .
T Consensus 163 ~~mPfGl~~sP~~fq~~m~~il~~~~~~~~~~~v~~Y~DDili~s~--~~eeh~~~l~~v~~~L~~~gl~l~~~Kc~f~~ 240 (255)
T 3fsi_A 163 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAAT--SELDCQQGTRALLQTLGNLGYRASAKKAQICQ 240 (255)
T ss_dssp SBCCTTCTTHHHHHHHHHHHHTHHHHHHCTTCEEEEETTEEEEEES--SHHHHHHHHHHHHHHHHHHTCCBCTTTCEEEE
T ss_pred EEeCCCCCCcHHHHHHHHHHHHHHHHHhCcCcEEEEEcCCeEEEeC--CHHHHHHHHHHHHHHHHHCCeEECHHHhcccC
Confidence 34699999999999999999988742 55678999999998854 333321 000111122232222222 4
Q ss_pred CcceeeceeecCc
Q psy556 91 NTAKFLGLIWDRK 103 (435)
Q Consensus 91 ~~~kyLGv~ld~~ 103 (435)
++++|||..++.+
T Consensus 241 ~~~~fLG~~i~~~ 253 (255)
T 3fsi_A 241 KQVKYLGYLLKEG 253 (255)
T ss_dssp SEEEETTEEEETT
T ss_pred CceEEEEEEEeCC
Confidence 6799999999875
No 17
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=96.43 E-value=0.00086 Score=67.04 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=50.5
Q ss_pred cCCCCCCCchhHHHHHHHHHhhhhhcC---CCcceeeeccceeEEEecCCHhHhh-----ccCCCCCceEeCCeeeeccC
Q psy556 20 ENGLVQGSSLSTLLFAVFMNDIFHVIN---LPTRGLLFVDDLLLTIRGKILEQLG-----SRNPTLPLIMLNGNQLKFDN 91 (435)
Q Consensus 20 ~~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~l~-----k~~~~~~~~~l~~~~I~~~~ 91 (435)
-.-+|||-.-||.+|+-+|+.+++.+. +++.+..|+||+.+.+.....+... ...+....+.++..+.....
T Consensus 146 ~~vmPfGl~nsPa~fq~~m~~il~~~~~~~~~~~v~vY~DDIlI~s~~~~~eh~~~l~~v~~~l~~~gL~l~~~Kc~~~~ 225 (428)
T 2zd1_B 146 YNVLPQGWKGSPAIFQSSMTKILEPFKKQNPDIVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEP 225 (428)
T ss_dssp ESBCCTTCTHHHHHHHHHHHHHHHHHHHHCTTCEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred EEeeCCCCcchHHHHHHHHHHHHHHHhhcCCCceEEEEecceEEecCCcHHHHHHHHHHHHHHHHHhCCccChhHccccc
Confidence 456899999999999999999998742 4566899999999987543222211 00111112333333333456
Q ss_pred cceeeceeecCc
Q psy556 92 TAKFLGLIWDRK 103 (435)
Q Consensus 92 ~~kyLGv~ld~~ 103 (435)
+++|||..++++
T Consensus 226 ~~~fLG~~i~~~ 237 (428)
T 2zd1_B 226 PFLWMGYELHPD 237 (428)
T ss_dssp -CTTCCEEECGG
T ss_pred eEEEeccEecCC
Confidence 789999999865
No 18
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=95.51 E-value=0.0053 Score=61.77 Aligned_cols=81 Identities=20% Similarity=0.155 Sum_probs=52.8
Q ss_pred CCCCCCCchhHHHHHHHHHhhhhhcC---CCcceeeeccceeEEEecCCHhHhh------ccCCCCCceEeCCeeeec-c
Q psy556 21 NGLVQGSSLSTLLFAVFMNDIFHVIN---LPTRGLLFVDDLLLTIRGKILEQLG------SRNPTLPLIMLNGNQLKF-D 90 (435)
Q Consensus 21 ~GvpQGs~LSP~Lf~l~~~~l~~~~~---~~~~~~~yADD~~i~~~~~~~~~l~------k~~~~~~~~~l~~~~I~~-~ 90 (435)
.-+|||-.-||.+|+-+|+.+++.+. .+..+..|+||+.+.+.. .++.. ...+....+.++-.+... .
T Consensus 167 ~~mpfGl~naP~~fq~~m~~~l~~~~~~~~~~~v~~YvDDili~s~~--~~e~~~~l~~v~~~l~~~gl~l~~~K~~f~~ 244 (455)
T 1rw3_A 167 TRLPQGFKNSPTLFDEALHRDLADFRIQHPDLILLQYVDDLLLAATS--ELDCQQGTRALLQTLGNLGYRASAKKAQICQ 244 (455)
T ss_dssp SBCCSSCTTHHHHHHHHHHHHHHHHHHTCTTCEEEEETTEEEEEESS--HHHHHHHHHHHHHHHHHHTCCBCGGGCCCSB
T ss_pred EecCCCCCCcHHHHHHHHHHHHHHhhhhCCCceEEEEcCCEEEecCC--HHHHHHHHHHHHHHHHHcCCccCccchhhhc
Confidence 45899999999999999999988742 456788999999888544 33321 000001112222222211 4
Q ss_pred CcceeeceeecCc
Q psy556 91 NTAKFLGLIWDRK 103 (435)
Q Consensus 91 ~~~kyLGv~ld~~ 103 (435)
++++|||..++.+
T Consensus 245 ~~~~fLG~~i~~~ 257 (455)
T 1rw3_A 245 KQVKYLGYLLKEG 257 (455)
T ss_dssp SSCEETTEEESSS
T ss_pred cceeEeeeeccCC
Confidence 6789999999865
No 19
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=85.54 E-value=0.082 Score=44.03 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=33.7
Q ss_pred hhhcc-------------cccccCCHHHHHHhhccCCC-C-C-----------c----------eEEEEEecccCCCCcc
Q psy556 248 EYKDL-------------TPPWSDDMSEVIDLWRNLTS-N-N-----------I----------KLTFIWCPSHCGIEGN 291 (435)
Q Consensus 248 El~ai-------------~~i~sDs~sa~~~l~~~~~~-~-~-----------i----------~v~~~Wvp~H~gi~gN 291 (435)
|+.|+ +.|+|||+.+++-+++.... + + + .++...+.-|++.-||
T Consensus 55 El~A~i~aL~~~~~~~~~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge 134 (142)
T 1zbf_A 55 EFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGE 134 (142)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCS
T ss_pred HHHHHHHHHHHHHhCCCeEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCc
Confidence 88887 67999999999999876421 1 1 1 4455556666666777
Q ss_pred hHHh
Q psy556 292 EEVD 295 (435)
Q Consensus 292 e~AD 295 (435)
+.||
T Consensus 135 ~pad 138 (142)
T 1zbf_A 135 IKAD 138 (142)
T ss_dssp CTTC
T ss_pred Cccc
Confidence 7776
No 20
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=74.02 E-value=0.8 Score=37.48 Aligned_cols=20 Identities=15% Similarity=0.298 Sum_probs=17.3
Q ss_pred hhhcc-------------cccccCCHHHHHHhh
Q psy556 248 EYKDL-------------TPPWSDDMSEVIDLW 267 (435)
Q Consensus 248 El~ai-------------~~i~sDs~sa~~~l~ 267 (435)
|++|+ +.|+|||+.+++-+.
T Consensus 49 El~A~i~aL~~l~~~~~~v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 49 EFLAIVHGLRYLKERNSRKPIYSNSQTAIKWVK 81 (134)
T ss_dssp HHHHHHHHHHHHHHTTCCCCEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCEEEEcchHHHHHHHH
Confidence 88887 679999999998874
No 21
>1xr5_A Genome polyprotein; RNA-dependent RNA polymerase, transferase; 2.80A {Human rhinovirus 14} SCOP: e.8.1.4
Probab=47.06 E-value=14 Score=36.66 Aligned_cols=51 Identities=14% Similarity=0.269 Sum_probs=34.7
Q ss_pred cceeccCCCCCCC----chhHHHHHHHHHhhhhhc----C-CCcceeeeccceeEEEecC
Q psy556 15 NFKGLENGLVQGS----SLSTLLFAVFMNDIFHVI----N-LPTRGLLFVDDLLLTIRGK 65 (435)
Q Consensus 15 ~~~~i~~GvpQGs----~LSP~Lf~l~~~~l~~~~----~-~~~~~~~yADD~~i~~~~~ 65 (435)
..+.+..|+|+|+ ++..++-++++....... . ..+.++.|.||.++.+...
T Consensus 277 ~v~~~~~G~PSG~p~Tsi~NSi~n~i~i~~a~~~~~~~~~~~~~~~~~yGDD~iis~~~~ 336 (466)
T 1xr5_A 277 EIYVVEGGMPSGCSGTSIFNSMINNIIIRTLILDAYKGIDLDKLKILAYGDDLIVSYPYE 336 (466)
T ss_dssp SEEEEESCCCTTSSSHHHHHHHHHHHHHHHHHHHHCSSCCGGGCEEEEETTEEEEECSSC
T ss_pred EEEEEeCcCCCCCCchhchhhHHHHHHHHHHHHHHhcCCCccceEEEEECCCCCceeCCC
Confidence 4578899999994 556666555555544321 1 2466899999999976654
No 22
>1ra6_A P3D, genome polyprotein; nucleotidyltransferase, RNA-dependent, polym terminus, transferase; 2.00A {Human poliovirus 1} SCOP: e.8.1.4 PDB: 1ra7_A* 2ily_A* 2ilz_A* 2im0_A* 2im1_A* 2im2_A* 2im3_A* 2ijf_A 3ol9_A* 3ol7_A 3ol8_A 3ol6_A* 3ola_A* 3olb_A* 1tql_A 1rdr_A 1raj_A 3ddk_A 3cdu_A 3cdw_A
Probab=45.02 E-value=26 Score=34.66 Aligned_cols=56 Identities=11% Similarity=0.185 Sum_probs=36.1
Q ss_pred EEECCccccceeccCCCCCCCch----hHHHHHHHHHhhhhhc----C-CCcceeeeccceeEEEecC
Q psy556 7 VKCNNLISNFKGLENGLVQGSSL----STLLFAVFMNDIFHVI----N-LPTRGLLFVDDLLLTIRGK 65 (435)
Q Consensus 7 v~~~g~~s~~~~i~~GvpQGs~L----SP~Lf~l~~~~l~~~~----~-~~~~~~~yADD~~i~~~~~ 65 (435)
+..+|. .+.+..|.|+|++. ..++-++++.-..... . ..+.++.|.||.++-+...
T Consensus 273 ~~~~g~---v~~~~~G~PSG~p~Tsv~NSl~n~i~~~~~~~~~~~~~~~~~~~~~~yGDD~i~~~~~~ 337 (461)
T 1ra6_A 273 HLYKNK---TYXVKGGMPSGXSGTSIFNSMINNLIIRTLLLKTYKGIDLDHLKMIAYGDDVIASYPHE 337 (461)
T ss_dssp EEETTE---EEEEESCCCTBSTTHHHHHHHHHHHHHHHHHHHHSTTCCGGGCEEEEETTEEEEEESSC
T ss_pred EEECCE---EEEEEeecCCCCCeeeeehHHHHHHHHHHHHHHcCCCCCCceEEEEecCCceEEEeccc
Confidence 445664 57889999999654 4444444444333221 1 2467889999999987654
No 23
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=35.34 E-value=13 Score=28.37 Aligned_cols=28 Identities=11% Similarity=-0.024 Sum_probs=23.7
Q ss_pred CCCCCCCcccchhHH-hhccCcHHhhhhc
Q psy556 386 PLCSCGENLLTVKHL-LDCVHHAPVRSTL 413 (435)
Q Consensus 386 ~~C~~c~~~et~~H~-~~Cp~~~~~R~~l 413 (435)
-.|+.||+..+-.|. -.||+.......+
T Consensus 72 Y~CpiCGATGd~AHT~kYCP~~~~~~~sv 100 (106)
T 3alr_A 72 YKCPLCGATGAKAHTKRFCPMVDKNYCSV 100 (106)
T ss_dssp CCCTTTCCCGGGCCCGGGCTTCGGGGCCC
T ss_pred ccCCCCCCcCCcccceecCCCCCCccCce
Confidence 569999999999999 9999988765443
No 24
>3uqs_A RNA-dependent RNA polymerase; transferase; 2.00A {Murine norovirus} PDB: 3ur0_A* 3upf_A* 3sfg_A* 3nah_A 3nai_A 3qid_A* 3sfu_A*
Probab=33.19 E-value=34 Score=34.44 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=33.9
Q ss_pred EEECCccccceeccCCCCCCCchhHH----HHHHHHHhhhhh---cC-----CCcceeeeccceeEEEecC
Q psy556 7 VKCNNLISNFKGLENGLVQGSSLSTL----LFAVFMNDIFHV---IN-----LPTRGLLFVDDLLLTIRGK 65 (435)
Q Consensus 7 v~~~g~~s~~~~i~~GvpQGs~LSP~----Lf~l~~~~l~~~---~~-----~~~~~~~yADD~~i~~~~~ 65 (435)
+..+| ..+.+..|.|.|+++--+ +-.+++.-.... ++ ..+.+++|-||.++-+...
T Consensus 285 ~~~~g---~v~~v~gG~PSG~p~Tsi~NSi~n~i~~~~a~~~~~g~~~~~f~~~~~~~~yGDD~i~sv~~~ 352 (515)
T 3uqs_A 285 LDVGD---YKIVVEEGLPSGCPCTTQLNSLAHWILTLCAMVEVTRVDPDIVMQESEFSFYGDDEVVSTNLE 352 (515)
T ss_dssp EECSS---EEEEECSSCCCCSTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHTEEEEEETTEEEEEESSC
T ss_pred EEECC---EEEEEcCCccCCCcceeeEchHHHHHHHHHHHHHhcCCCHHHhhhheEEEEeCCceEEEeccc
Confidence 44555 447899999999766443 333333322221 11 2345689999999877653
Done!