Psyllid ID: psy5562

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILHAPA
cccccEEEEEcccccccEEEEEEEEEccccccccccEEEEEEEEEEcccccccHHHHHHcccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEccccEEEEEEEcccEEEEEccccccHHHHHHHHcccccccccccccEEEEEEEEcccccccHHHHHHHHHcccEEEEEEcccccccEEEEEEEEEcccEEEEEEEEccccccEEEEEEEccccHHHHHHHHHHHHHcccc
ccccccEEEEcHHHcccEEEEEEEEEEcccccccccEEEEEEEEEEcccccEcccEEEEccEccccEEcccccccccEccccEEEEEEEEEccccEcccccccEEEEEEEccccEEEEEEEccHHHHEcccccccHHHHHHHHHHccHHHcEEEEEccccccHHHHHHHHHccccEEEEEEEccEEEEEEEEccEEEEEEEEEEccccEEEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHccc
mytppkqcwlpaekgkgmeiwgtfsrkpnpatpgigvIEMELTftnksmapMANFAIQVnknsfgltparplqvmspllpslsveaslpmattgavqrmepltNLQVAVKNNLDVFYFACIVpinvyfmedgeMERKTFLTTwkeiptqnedgnaifCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWvlnelkiqpgdpsvtlslksrssDVAQDIFHAYDAILHAPA
mytppkqcwlpaekGKGMEIWGTfsrkpnpatpgIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVftiakrnvegkDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILHAPA
MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILHAPA
*******CWLPAEKGKGMEIWGTFSR****ATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLL**********MATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQ****************VAQDIFHAYDAIL****
*YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMS*L*****VEASLPMATTG****MEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNED*NAI**CQ*QFT*****LGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILHA**
MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILHAPA
MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILHA**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILHAPA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
P62944937 AP-2 complex subunit beta yes N/A 0.916 0.244 0.559 2e-79
Q9DBG3937 AP-2 complex subunit beta yes N/A 0.916 0.244 0.559 2e-79
P63010937 AP-2 complex subunit beta yes N/A 0.916 0.244 0.559 2e-79
Q08DS7951 AP-1 complex subunit beta yes N/A 0.916 0.240 0.559 2e-79
P63009937 AP-2 complex subunit beta yes N/A 0.916 0.244 0.559 2e-79
Q10567949 AP-1 complex subunit beta no N/A 0.916 0.241 0.548 2e-76
P52303949 AP-1 complex subunit beta no N/A 0.916 0.241 0.551 2e-75
O35643943 AP-1 complex subunit beta no N/A 0.916 0.242 0.546 7e-75
O81742893 Beta-adaptin-like protein yes N/A 0.88 0.246 0.349 1e-26
Q9SUS3894 Beta-adaptin-like protein no N/A 0.916 0.256 0.329 2e-25
>sp|P62944|AP2B1_RAT AP-2 complex subunit beta OS=Rattus norvegicus GN=Ap2b1 PE=1 SV=1 Back     alignment and function desciption
 Score =  295 bits (755), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 137/245 (55%), Positives = 182/245 (74%), Gaps = 16/245 (6%)

Query: 2   YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
           Y  PK  WLPA K KG+EI GTF+ +        G I ME+ FTNK++  M +FAIQ NK
Sbjct: 707 YVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 759

Query: 62  NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
           NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct: 760 NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 819

Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
           +P+NV F+EDG+MER+ FL TWK+IP +NE         +QF +    L AD + S+++ 
Sbjct: 820 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQN 870

Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
           NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+  
Sbjct: 871 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 930

Query: 242 YDAIL 246
           YD+IL
Sbjct: 931 YDSIL 935
Component of the adaptor protein complex 2 (AP-2). Adaptor protein complexes function in protein transport via transport vesicles in different membrane traffic pathways. Adaptor protein complexes are vesicle coat components and appear to be involved in cargo selection and vesicle formation. AP-2 is involved in clathrin-dependent endocytosis in which cargo proteins are incorporated into vesicles surrrounded by clathrin (clathrin-coated vesicles, CCVs) which are destined for fusion with the early endosome. The clathrin lattice serves as a mechanical scaffold but is itself unable to bind directly to membrane components. Clathrin-associated adaptor protein (AP) complexes which can bind directly to both the clathrin lattice and to the lipid and protein components of membranes are considered to be the major clathrin adaptors contributing the CCV formation. AP-2 also serves as a cargo receptor to selectively sort the membrane proteins involved in receptor-mediated endocytosis. AP-2 seems to play a role in the recycling of synaptic vesicle membranes from the presynaptic surface. AP-2 recognizes Y-X-X-[FILMV] (Y-X-X-Phi) and [ED]-X-X-X-L-[LI] endocytosis signal motifs within the cytosolic tails of transmembrane cargo molecules. AP-2 may also play a role in maintaining normal post-endocytic trafficking through the ARF6-regulated, non-clathrin pathway. The AP-2 beta subunit acts via its C-terminal appendage domain as a scaffolding platform for endocytic accessory proteins; at least some clathrin-associated sorting proteins (CLASPs) are recognized by their [DE]-X(1,2)-F-X-X-[FL]-X-X-X-R motif. The AP-2 beta subunit binds to clathrin heavy chain, promoting clathrin lattice assembly; clathrin displaces at least some CLASPs from AP2B1 which probably then can be positioned for further coat assembly.
Rattus norvegicus (taxid: 10116)
>sp|Q9DBG3|AP2B1_MOUSE AP-2 complex subunit beta OS=Mus musculus GN=Ap2b1 PE=1 SV=1 Back     alignment and function description
>sp|P63010|AP2B1_HUMAN AP-2 complex subunit beta OS=Homo sapiens GN=AP2B1 PE=1 SV=1 Back     alignment and function description
>sp|Q08DS7|AP1B1_BOVIN AP-1 complex subunit beta-1 OS=Bos taurus GN=AP2B1 PE=2 SV=1 Back     alignment and function description
>sp|P63009|AP2B1_BOVIN AP-2 complex subunit beta OS=Bos taurus GN=AP2B1 PE=1 SV=2 Back     alignment and function description
>sp|Q10567|AP1B1_HUMAN AP-1 complex subunit beta-1 OS=Homo sapiens GN=AP1B1 PE=1 SV=2 Back     alignment and function description
>sp|P52303|AP1B1_RAT AP-1 complex subunit beta-1 OS=Rattus norvegicus GN=Ap1b1 PE=1 SV=1 Back     alignment and function description
>sp|O35643|AP1B1_MOUSE AP-1 complex subunit beta-1 OS=Mus musculus GN=Ap1b1 PE=1 SV=2 Back     alignment and function description
>sp|O81742|APBLC_ARATH Beta-adaptin-like protein C OS=Arabidopsis thaliana GN=BETAC-AD PE=1 SV=2 Back     alignment and function description
>sp|Q9SUS3|APBLB_ARATH Beta-adaptin-like protein B OS=Arabidopsis thaliana GN=BETAB-AD PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
242011463 911 conserved hypothetical protein [Pediculu 0.924 0.253 0.643 1e-92
328780508 941 PREDICTED: AP-2 complex subunit beta-lik 0.924 0.245 0.663 7e-92
380014710 932 PREDICTED: AP-2 complex subunit beta-lik 0.924 0.247 0.663 7e-92
307206504296 AP-1 complex subunit beta-1 [Harpegnatho 0.924 0.780 0.659 8e-92
193683802 912 PREDICTED: AP-2 complex subunit beta-lik 0.924 0.253 0.647 8e-92
322783279 922 hypothetical protein SINV_11497 [Solenop 0.924 0.250 0.651 1e-91
332016250 881 AP-1 complex subunit beta-1 [Acromyrmex 0.924 0.262 0.655 2e-91
307181133 944 AP-1 complex subunit beta-1 [Camponotus 0.924 0.244 0.651 5e-91
350415878 941 PREDICTED: AP-2 complex subunit beta-lik 0.924 0.245 0.655 2e-90
350415874 923 PREDICTED: AP-2 complex subunit beta-lik 0.924 0.250 0.655 2e-90
>gi|242011463|ref|XP_002426469.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510581|gb|EEB13731.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 159/247 (64%), Positives = 202/247 (81%), Gaps = 16/247 (6%)

Query: 2   YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
           Y  PK  WLPAE+GKG+EIWGTFSR+        G ++M+ T TNK+M  MA FAIQ+NK
Sbjct: 681 YVAPKVQWLPAERGKGLEIWGTFSRRN-------GQVQMDFTITNKAMQAMAEFAIQLNK 733

Query: 62  NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
           NSFG+ PA+PLQV++PL P  + E S+P+ T+G VQRM+PL NLQVA+KNN+DVFYFAC+
Sbjct: 734 NSFGVAPAKPLQVVTPLPPGQTFETSVPLNTSGVVQRMDPLNNLQVAIKNNIDVFYFACL 793

Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
           +P+NV+FMEDGEM+++ FL+TWK+IP+QNE         VQFTL+NI L ADAI+++MKQ
Sbjct: 794 IPVNVFFMEDGEMDKRVFLSTWKDIPSQNE---------VQFTLSNITLNADAIINKMKQ 844

Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
           NNVFTIAKRNVEG+DMLYQSL+L N IWVLNELK+QPG+P+VTLSLKS++ +VA  I+ A
Sbjct: 845 NNVFTIAKRNVEGQDMLYQSLKLVNQIWVLNELKMQPGNPNVTLSLKSKAVEVASVIYQA 904

Query: 242 YDAILHA 248
           YDAILH+
Sbjct: 905 YDAILHS 911

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328780508|ref|XP_003249811.1| PREDICTED: AP-2 complex subunit beta-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380014710|ref|XP_003691363.1| PREDICTED: AP-2 complex subunit beta-like [Apis florea] Back     alignment and taxonomy information
>gi|307206504|gb|EFN84530.1| AP-1 complex subunit beta-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|193683802|ref|XP_001945401.1| PREDICTED: AP-2 complex subunit beta-like isoform 1 [Acyrthosiphon pisum] gi|328712609|ref|XP_003244859.1| PREDICTED: AP-2 complex subunit beta-like isoform 2 [Acyrthosiphon pisum] gi|328712611|ref|XP_003244860.1| PREDICTED: AP-2 complex subunit beta-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|322783279|gb|EFZ10863.1| hypothetical protein SINV_11497 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332016250|gb|EGI57163.1| AP-1 complex subunit beta-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|307181133|gb|EFN68864.1| AP-1 complex subunit beta-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|350415878|ref|XP_003490776.1| PREDICTED: AP-2 complex subunit beta-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|350415874|ref|XP_003490775.1| PREDICTED: AP-2 complex subunit beta-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
UNIPROTKB|E1BXC1938 AP2B1 "Uncharacterized protein 0.916 0.244 0.569 3.7e-71
UNIPROTKB|E1BY12952 AP2B1 "Uncharacterized protein 0.916 0.240 0.569 3.7e-71
UNIPROTKB|P63009937 AP2B1 "AP-2 complex subunit be 0.916 0.244 0.559 7.7e-71
UNIPROTKB|Q08DS7951 AP2B1 "AP-1 complex subunit be 0.916 0.240 0.559 7.7e-71
UNIPROTKB|E2RIV1951 AP2B1 "Uncharacterized protein 0.916 0.240 0.559 7.7e-71
UNIPROTKB|K7EJT8913 AP2B1 "AP-2 complex subunit be 0.916 0.250 0.559 7.7e-71
UNIPROTKB|P63010937 AP2B1 "AP-2 complex subunit be 0.916 0.244 0.559 7.7e-71
UNIPROTKB|Q7Z451880 AP2B1 "AP-2 complex subunit be 0.916 0.260 0.559 7.7e-71
UNIPROTKB|I3L6Y6939 AP2B1 "Uncharacterized protein 0.916 0.243 0.559 7.7e-71
MGI|MGI:1919020937 Ap2b1 "adaptor-related protein 0.916 0.244 0.559 7.7e-71
UNIPROTKB|E1BXC1 AP2B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 720 (258.5 bits), Expect = 3.7e-71, P = 3.7e-71
 Identities = 140/246 (56%), Positives = 184/246 (74%)

Query:     2 YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
             Y  PK  WLPA K KG+EI GTFS +        G I ME+ FTNK++  M +FAIQ NK
Sbjct:   707 YVAPKSVWLPAVKAKGLEISGTFSHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 759

Query:    62 NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
             NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct:   760 NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 819

Query:   122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGA-DAIVSRMK 180
             +P+NV F+EDG+MER+ FL TWK+IP +NE         +QF + +  L A D + S+++
Sbjct:   820 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKDCHLNAADTVSSKLQ 870

Query:   181 QNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFH 240
              NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+ 
Sbjct:   871 NNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQ 930

Query:   241 AYDAIL 246
             AYDAIL
Sbjct:   931 AYDAIL 936
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0008565 "protein transporter activity" evidence=IEA
GO:0016192 "vesicle-mediated transport" evidence=IEA
GO:0030131 "clathrin adaptor complex" evidence=IEA
UNIPROTKB|E1BY12 AP2B1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P63009 AP2B1 "AP-2 complex subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q08DS7 AP2B1 "AP-1 complex subunit beta-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RIV1 AP2B1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|K7EJT8 AP2B1 "AP-2 complex subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P63010 AP2B1 "AP-2 complex subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z451 AP2B1 "AP-2 complex subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L6Y6 AP2B1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1919020 Ap2b1 "adaptor-related protein complex 2, beta 1 subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P63009AP2B1_BOVINNo assigned EC number0.55910.9160.2443yesN/A
P63010AP2B1_HUMANNo assigned EC number0.55910.9160.2443yesN/A
P62944AP2B1_RATNo assigned EC number0.55910.9160.2443yesN/A
Q08DS7AP1B1_BOVINNo assigned EC number0.55910.9160.2407yesN/A
Q9DBG3AP2B1_MOUSENo assigned EC number0.55910.9160.2443yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
smart01020111 smart01020, B2-adapt-app_C, Beta2-adaptin appendag 1e-39
pfam09066113 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage 2e-31
smart00809104 smart00809, Alpha_adaptinC2, Adaptin C-terminal do 5e-13
pfam02883115 pfam02883, Alpha_adaptinC2, Adaptin C-terminal dom 3e-08
>gnl|CDD|198088 smart01020, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information 
 Score =  132 bits (334), Expect = 1e-39
 Identities = 58/119 (48%), Positives = 75/119 (63%), Gaps = 9/119 (7%)

Query: 128 FMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTI 187
           F+EDG+MER+ FL TWK +P  NE          QF L    L  D I+ +++ NN+FTI
Sbjct: 1   FVEDGQMEREVFLKTWKSLPESNE---------QQFQLQPNNLNPDTIIKKLQSNNIFTI 51

Query: 188 AKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAIL 246
           AKRNV  +D LY S +LTNGIW+L EL I PG P+VTLS+K  S +V Q     ++ IL
Sbjct: 52  AKRNVGNQDKLYLSAKLTNGIWILIELTINPGTPNVTLSVKCDSPEVIQLFTQVFEKIL 110

Members of this family adopt a structure consisting of a 5 stranded beta-sheet, flanked by one alpha helix on the outer side, and by two alpha helices on the inner side. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15). Length = 111
>gnl|CDD|220099 pfam09066, B2-adapt-app_C, Beta2-adaptin appendage, C-terminal sub-domain Back     alignment and domain information
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information
>gnl|CDD|217268 pfam02883, Alpha_adaptinC2, Adaptin C-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
PF09066114 B2-adapt-app_C: Beta2-adaptin appendage, C-termina 99.94
KOG1061|consensus734 99.09
smart00809104 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptin 98.63
PF02883115 Alpha_adaptinC2: Adaptin C-terminal domain; InterP 98.21
PF14796145 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit 97.7
PF14807104 AP4E_app_platf: Adaptin AP4 complex epsilon append 96.45
PF02296113 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal dom 94.96
KOG1060|consensus968 94.82
KOG1077|consensus938 92.68
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 89.36
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 88.29
PF14806129 Coatomer_b_Cpla: Coatomer beta subunit appendage p 82.01
>PF09066 B2-adapt-app_C: Beta2-adaptin appendage, C-terminal sub-domain; InterPro: IPR015151 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information 
Probab=99.94  E-value=9.6e-27  Score=185.08  Aligned_cols=111  Identities=39%  Similarity=0.740  Sum_probs=90.8

Q ss_pred             eccCCcccHHHHHhhhccCCCCc--cCccceeeeeeeEEecccccCHHHHHHHHhhCCeEEEeecccCC-cceEEEEEEe
Q psy5562         128 FMEDGEMERKTFLTTWKEIPTQN--EDGNAIFCCQVQFTLTNIALGADAIVSRMKQNNVFTIAKRNVEG-KDMLYQSLRL  204 (250)
Q Consensus       128 f~e~G~m~r~~Fl~~WksiP~~n--E~~~~~~~~~~~~~i~~~~~~~d~i~~kL~~~Nif~VAkr~~~g-q~~lY~S~k~  204 (250)
                      |.|||+|||++|+++|++||+++  |         .++.++....++|++.++|+++|||+||+|.+++ ++++|||+|+
T Consensus         1 f~~d~~~~~~~F~~~W~sl~~~~~~e---------~~~~~~~~~~~~~~i~~~L~~~nI~~iA~~~~~~~~~~~y~s~~~   71 (114)
T PF09066_consen    1 FVEDGSMDPEEFQEMWKSLPDSNQQE---------LSIQLNASVPSPDAIEEKLQANNIFTIASGKVDNGQKFFYFSAKT   71 (114)
T ss_dssp             B-TT----HHHHHHHHHHS-GGG--E---------EEEEETT----HHHHHHHHHCTT-EEEEEEECTT-EEEEEEEEEB
T ss_pred             CCCCCccCHHHHHHHHHhCCcccceE---------EEEeccccCCcHHHHHHHHHHCCEEEEecCCCCccccEEEEEEEc
Confidence            68999999999999999999999  5         5566653457999999999999999999999885 9999999999


Q ss_pred             eCCcEEEEEEeeeCCCCceEEEEeeCCcchhHHHHHHHHHHhc
Q psy5562         205 TNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHAYDAILH  247 (250)
Q Consensus       205 ~n~i~~L~El~~~~~~~~~~~~lKs~~~~~~pli~~~~~~il~  247 (250)
                      ++|+++|+|++++++++.+++++||++++++|++.+++++||+
T Consensus        72 ~~~~~fL~El~~~~~~~~~~v~vK~~~~~~~~~f~~~~~~iL~  114 (114)
T PF09066_consen   72 TNGIWFLVELTIDPGSPSVKVTVKSENPEMAPLFLQLFESILK  114 (114)
T ss_dssp             TTS-EEEEEEEE-TT-SSEEEEEEESSCCCHHHHHHHHHHHCC
T ss_pred             CCCcEEEEEEEEcCCCccEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999985

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. This entry represents a subdomain of the appendage (ear) domain of beta-adaptin from AP clathrin adaptor complexes. This domain has a three-layer arrangement, alpha-beta-alpha, with a bifurcated antiparallel beta-sheet []. This domain is required for binding to clathrin, and its subsequent polymerisation. Furthermore, a hydrophobic patch present in the domain also binds to a subset of D-phi-F/W motif-containing proteins that are bound by the alpha-adaptin appendage domain (epsin, AP180, eps15) []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 1E42_B 2G30_A 2IV9_B 2IV8_A 3HS9_A 3H1Z_A.
>KOG1061|consensus Back     alignment and domain information
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain Back     alignment and domain information
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal Back     alignment and domain information
>PF14807 AP4E_app_platf: Adaptin AP4 complex epsilon appendage platform Back     alignment and domain information
>PF02296 Alpha_adaptin_C: Alpha adaptin AP2, C-terminal domain; InterPro: IPR003164 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1060|consensus Back     alignment and domain information
>KOG1077|consensus Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14806 Coatomer_b_Cpla: Coatomer beta subunit appendage platform Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2iv9_A238 B2-Appendage From Ap2 In Complex With Eps15 Peptide 8e-80
3h1z_A260 Molecular Basis For The Association Of Pipkigamma - 9e-80
1e42_A258 Beta2-Adaptin Appendage Domain, From Clathrin Adapt 1e-79
>pdb|2IV9|A Chain A, B2-Appendage From Ap2 In Complex With Eps15 Peptide Length = 238 Back     alignment and structure 
Iteration: 1

 Score =  293 bits (749), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 137/245 (55%), Positives = 182/245 (74%), Gaps = 16/245 (6%)
Query: 2   YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
           Y  PK  WLPA K KG+EI GTF+ +        G I ME+ FTNK++  M +FAIQ NK
Sbjct: 8   YVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 60
Query: 62  NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
           NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct: 61  NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 120
Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
           +P+NV F+EDG+MER+ FL TWK+IP +NE         +QF +    L AD + S+++ 
Sbjct: 121 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQN 171
Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
           NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+  
Sbjct: 172 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 231
Query: 242 YDAIL 246
           YD+IL
Sbjct: 232 YDSIL 236
>pdb|3H1Z|A Chain A, Molecular Basis For The Association Of Pipkigamma -P90 With The Clathrin Adaptor Ap-2 Length = 260 Back     alignment and structure
>pdb|1E42|A Chain A, Beta2-Adaptin Appendage Domain, From Clathrin Adaptor Ap2 Length = 258 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 2e-82
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Length = 258 Back     alignment and structure
 Score =  246 bits (628), Expect = 2e-82
 Identities = 137/246 (55%), Positives = 182/246 (73%), Gaps = 16/246 (6%)

Query: 2   YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNK 61
           Y  PK  WLPA K KG+EI GTF+ +        G I ME+ FTNK++  M +FAIQ NK
Sbjct: 28  YVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFNK 80

Query: 62  NSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACI 121
           NSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C+
Sbjct: 81  NSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCL 140

Query: 122 VPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQVQFTLTNIALGADAIVSRMKQ 181
           +P+NV F+EDG+MER+ FL TWK+IP +NE         +QF +    L AD + S+++ 
Sbjct: 141 IPLNVLFVEDGKMERQVFLATWKDIPNENE---------LQFQIKECHLNADTVSSKLQN 191

Query: 182 NNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA 241
           NNV+TIAKRNVEG+DMLYQSL+LTNGIW+L EL+IQPG+P+ TLSLK R+ +V+Q I+  
Sbjct: 192 NNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV 251

Query: 242 YDAILH 247
           YD+IL 
Sbjct: 252 YDSILK 257
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
2g30_A258 AP-2 complex subunit beta-1; alpha-helical ARH pep 100.0
3hs8_A273 Adaptor protein complex AP-2, alpha 2 subunit; ada 99.0
1kyf_A247 Alpha-adaptin C; protein-peptide complex, endocyto 98.73
1r4x_A275 Gamma1-COP, coatomer gamma subunit; appendage, bet 97.29
1pzd_A322 Coatomer gamma subunit; platform domain, appendage 96.99
3mnm_A123 ADP-ribosylation factor-binding protein GGA2; IG-l 91.53
3zy7_A122 AP-1 complex subunit gamma-1; endocytosis, protein 89.74
2e9g_A131 AP-1 complex subunit gamma-2; beta-sandwich, immun 89.46
1gyu_A140 Adapter-related protein complex 1 gamma 1 subunit; 89.07
1iu1_A146 Gamma1-adaptin; coated PITS, endocytosis; 1.80A {H 87.9
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A Back     alignment and structure
Probab=100.00  E-value=6e-74  Score=516.47  Aligned_cols=231  Identities=59%  Similarity=1.057  Sum_probs=225.9

Q ss_pred             CCCCceeeeecCCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccCccccccCCCCCCCccCCCC
Q psy5562           2 YTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLPS   81 (250)
Q Consensus         2 ~~~p~~~~l~a~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~pg   81 (250)
                      |++|+.+||++++|+||||+|+|.|+       +|+|+|+|+|+|++++||++||||||||+|||+|++++++|.+|+||
T Consensus        28 ~~~p~~~~l~~~~g~GLeI~g~f~r~-------~g~i~l~l~~~N~s~~~is~faIQfNkNsFGL~p~~~~~~~~~L~pg  100 (258)
T 2g30_A           28 YVAPKAVWLPAVKAKGLEISGTFTHR-------QGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMPN  100 (258)
T ss_dssp             CCCCCEEEECGGGTTTEEEEEEEEEE-------TTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCTT
T ss_pred             CCCchhhcccccCCCcEEEEEEEEEe-------CCEEEEEEEEecCCccceeeeEEEEcccccCcccCccccCCCccCCC
Confidence            78999999999999999999999999       99999999999999999999999999999999999999998899999


Q ss_pred             CeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecccceEEeccCCcccHHHHHhhhccCCCCccCccceeeeee
Q psy5562          82 LSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINVYFMEDGEMERKTFLTTWKEIPTQNEDGNAIFCCQV  161 (250)
Q Consensus        82 qs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ipl~vlf~e~G~m~r~~Fl~~WksiP~~nE~~~~~~~~~~  161 (250)
                      ||++++|||.++|++++++|+++||||||||.|||||++++|++++|.|||+|+|++|+++||+||+++|         .
T Consensus       101 qs~~v~lpl~~~~~~~~~~p~~~LQVAIKtn~~vfYF~~~ipl~~l~~e~g~m~~~~F~~~Wk~ip~~nE---------~  171 (258)
T 2g30_A          101 QSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNVLFVEDGKMERQVFLATWKDIPNENE---------L  171 (258)
T ss_dssp             CEEEEEEEEESCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGGGBCSCCCCCHHHHHHHHHHSCGGGC---------E
T ss_pred             CcEEEEEeeecCCcccCCCCCchheeeeecCCceEEEEeecCHHHhcCCcCccCHHHHHHHHhhCCCccc---------e
Confidence            9999999999999999999989999999999999999999999999999999999999999999999999         8


Q ss_pred             eEEecccccCHHHHHHHHhhCCeEEEeecccCCcceEEEEEEeeCCcEEEEEEeeeCCCCceEEEEeeCCcchhHHHHHH
Q psy5562         162 QFTLTNIALGADAIVSRMKQNNVFTIAKRNVEGKDMLYQSLRLTNGIWVLNELKIQPGDPSVTLSLKSRSSDVAQDIFHA  241 (250)
Q Consensus       162 ~~~i~~~~~~~d~i~~kL~~~Nif~VAkr~~~gq~~lY~S~k~~n~i~~L~El~~~~~~~~~~~~lKs~~~~~~pli~~~  241 (250)
                      +++++++.+++|++++||+++|||+||||+++||+++|||+||+|++|+|+||++++++++++|++||++++++|+++++
T Consensus       172 ~~~i~~~~~~~~~i~~kL~~~nif~Va~r~~~~q~~ly~S~kt~n~i~vL~el~~~~~~~~v~l~vks~~~~i~~li~~~  251 (258)
T 2g30_A          172 QFQIKECHLNADTVSSKLQNNNVYTIAKRNVEGQDMLYQSLKLTNGIWILAELRIQPGNPNYTLSLKCRAPEVSQYIYQV  251 (258)
T ss_dssp             EEEETTCCCCHHHHHHHHHHTTCEEEEEEEETTEEEEEEEEEBTTSCEEEEEEEECSSCSSEEEEEEESSGGGHHHHHHH
T ss_pred             eEecccCcCCHHHHHHHHHHCCeEEEEeecCCCCceEEEEEEccCCcEEEEEEEEccCCCcEEEEEecCCchHHHHHHHH
Confidence            89999888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcC
Q psy5562         242 YDAILHA  248 (250)
Q Consensus       242 ~~~il~~  248 (250)
                      +++||++
T Consensus       252 ~~~~l~~  258 (258)
T 2g30_A          252 YDSILKN  258 (258)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhhC
Confidence            9999975
>3hs8_A Adaptor protein complex AP-2, alpha 2 subunit; adaptor complex AP-2, endocytosis, cell membrane, coated PIT binding, membrane, disease mutation; 1.90A {Mus musculus} Back     alignment and structure
>1kyf_A Alpha-adaptin C; protein-peptide complex, endocytosis, endocytosis/exocytosis complex; 1.22A {Mus musculus} SCOP: b.1.10.1 d.105.1.1 PDB: 1ky7_A 1kyd_A 1ky6_A 1kyu_A 1qtp_A 1qts_A 2vj0_A 1w80_A 1b9k_A Back     alignment and structure
>1r4x_A Gamma1-COP, coatomer gamma subunit; appendage, beta sandwich, ADP-ribosylation factors, protein transport; 1.90A {Homo sapiens} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>1pzd_A Coatomer gamma subunit; platform domain, appendage domain, EAR domain, endocytosis/exocytosis complex; 2.31A {Bos taurus} SCOP: b.1.10.3 d.105.1.2 Back     alignment and structure
>3mnm_A ADP-ribosylation factor-binding protein GGA2; IG-like, beta sandwich, protein transport; HET: MLY; 1.73A {Saccharomyces cerevisiae} Back     alignment and structure
>3zy7_A AP-1 complex subunit gamma-1; endocytosis, protein design, computational design; 1.09A {Mus musculus} PDB: 2a7b_A 1gyv_A 1gyw_A Back     alignment and structure
>2e9g_A AP-1 complex subunit gamma-2; beta-sandwich, immunoglobulin-like fold, adaptin, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gyu_A Adapter-related protein complex 1 gamma 1 subunit; clathrin, golgi, adaptin, endocytosis, adaptor; 1.81A {Mus musculus} SCOP: b.1.10.2 Back     alignment and structure
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens} SCOP: b.1.10.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 250
d1e42a1120 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, 1e-50
d1e42a2113 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-termina 4e-45
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Alpha-adaptin ear subdomain-like
domain: Beta2-adaptin AP2 ear domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (403), Expect = 1e-50
 Identities = 69/126 (54%), Positives = 91/126 (72%), Gaps = 7/126 (5%)

Query: 1   MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVN 60
            Y  PK  WLPA K KG+EI GTF+ +        G I ME+ FTNK++  M +FAIQ N
Sbjct: 2   GYVAPKAVWLPAVKAKGLEISGTFTHRQ-------GHIYMEMNFTNKALQHMTDFAIQFN 54

Query: 61  KNSFGLTPARPLQVMSPLLPSLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFAC 120
           KNSFG+ P+ PL + +PL+P+ S++ SLP+ T G V +MEPL NLQVAVKNN+DVFYF+C
Sbjct: 55  KNSFGVIPSTPLAIHTPLMPNQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSC 114

Query: 121 IVPINV 126
           ++P+NV
Sbjct: 115 LIPLNV 120
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
d1e42a1120 Beta2-adaptin AP2 ear domain, N-terminal subdomain 100.0
d1e42a2113 Beta2-adaptin AP2, C-terminal subdomain {Human (Ho 100.0
d1kyfa2114 Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus 96.84
d1r4xa2111 Coatomer gamma subunit, C-terminal subdomain {Huma 96.64
d1kyfa1133 Alpha-adaptin AP2 ear domain, N-terminal subdomain 87.48
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 84.96
d2dwya1129 ADP-ribosylation factor binding protein Gga1 domai 83.61
d1gyva_120 Gamma1-adaptin domain {Human (Homo sapiens) [TaxId 83.37
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Clathrin adaptor appendage domain
family: Alpha-adaptin ear subdomain-like
domain: Beta2-adaptin AP2 ear domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-49  Score=315.65  Aligned_cols=119  Identities=58%  Similarity=1.035  Sum_probs=116.0

Q ss_pred             CCCCCceeeeecCCCcceEEEEEEecCCCCCCCCCCeEEEEEEEEeCCCCccchhheecccCccccccCCCCCCCccCCC
Q psy5562           1 MYTPPKQCWLPAEKGKGMEIWGTFSRKPNPATPGIGVIEMELTFTNKSMAPMANFAIQVNKNSFGLTPARPLQVMSPLLP   80 (250)
Q Consensus         1 ~~~~p~~~~l~a~~~~GLeI~g~f~r~~~~~~~~~g~i~l~l~itN~s~~~~~~faiQfNkNsFGl~P~~~l~~p~~l~p   80 (250)
                      .|+|||+|||||++|+||||+|+|+|+       +|+|+|+|+|+|+++++|++||||||||+|||+|++++++|.+|.|
T Consensus         2 ~~~~p~~~~lp~~~g~GLeI~g~f~r~-------~g~i~l~l~itN~s~~~ls~faIQfNKNsFGL~P~~~l~~p~~l~p   74 (120)
T d1e42a1           2 GYVAPKAVWLPAVKAKGLEISGTFTHR-------QGHIYMEMNFTNKALQHMTDFAIQFNKNSFGVIPSTPLAIHTPLMP   74 (120)
T ss_dssp             CCCCCCEEEECGGGTTTEEEEEEEEEE-------TTEEEEEEEEEECSSSCBCCCEEEECCBTTCCEESSCCCCCSCBCT
T ss_pred             CccCceeEEeecccCCcEEEEEEEEEe-------CCEEEEEEEEecCCCCccchheEEEcccccccccCCcccCCCccCC
Confidence            599999999999999999999999999       9999999999999999999999999999999999999999989999


Q ss_pred             CCeEEEEEeeeecCCCCCCCCCCceEEEeecCCcEEEEEecccceE
Q psy5562          81 SLSVEASLPMATTGAVQRMEPLTNLQVAVKNNLDVFYFACIVPINV  126 (250)
Q Consensus        81 gqs~~~~lpl~~~g~~~~~~p~~~LQVAIKnN~dVfYF~~~ipl~v  126 (250)
                      |||++++|||+++|++++++|++.||||||||.|||||+|.+||++
T Consensus        75 gqS~~~~lpl~~~~~~~~~~p~~~LQVAIKnn~dvfYF~~~ipl~v  120 (120)
T d1e42a1          75 NQSIDVSLPLNTLGPVMKMEPLNNLQVAVKNNIDVFYFSCLIPLNV  120 (120)
T ss_dssp             TCEEEEEEEEESCSCBCCCSSTTEEEEEEECSSCEEEEEEECCGGG
T ss_pred             CCEEEEEEEEecCCcccCCCCCCeeEEEEEcCCceEEEeeeecccC
Confidence            9999999999999999989999999999999999999999999985
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa2 d.105.1.1 (A:825-938) Alpa-adaptin AP2, C-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1r4xa2 d.105.1.2 (A:763-873) Coatomer gamma subunit, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyfa1 b.1.10.1 (A:692-824) Alpha-adaptin AP2 ear domain, N-terminal subdomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d2dwya1 b.1.10.2 (A:511-639) ADP-ribosylation factor binding protein Gga1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gyva_ b.1.10.2 (A:) Gamma1-adaptin domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure