BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5567
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NDH|A Chain A, Crystal Structure Of Nadh-Cytochrome B5 Reductase From Pig
Liver At 2.4 Angstroms Resolution
Length = 272
Score = 193 bits (491), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 131/229 (57%), Gaps = 52/229 (22%)
Query: 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
TL +PD+K PL+L +K +NHDTR FRF LPS EH+
Sbjct: 6 TLENPDIKYPLRLIDKEVVNHDTRRFRFALPSPEHI------------------------ 41
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
LGLP+GQH+ LSA I+ V R YTPV+SD+
Sbjct: 42 ---------------------------LGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDK 74
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
G++DLV+KVYFK+ HPKFP GGKMSQ+LE+MK+G+ I GP G L Y G G+F IR
Sbjct: 75 GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMKIGDTIEFRGPNGLLVYQGKGKFAIRP-D 133
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
KK P V + MIAGGTGITPMLQ++R I KDP D+T L+FANQ
Sbjct: 134 KKSSPVIKTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 182
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 32/41 (78%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLP+GQH+ LSA I+ V R YTPV+SD+ G++DLV+K
Sbjct: 42 LGLPVGQHIYLSARIDGNLVIRPYTPVSSDDDKGFVDLVIK 82
>pdb|1IB0|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad And Nad
pdb|1I7P|A Chain A, Crystal Structure Of Rat B5r In Complex With Fad
Length = 274
Score = 189 bits (480), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/229 (45%), Positives = 129/229 (56%), Gaps = 52/229 (22%)
Query: 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
TL +PD+K PL+L +K ++HDTR FRF LPS +H+
Sbjct: 8 TLENPDIKYPLRLIDKEILSHDTRRFRFALPSPQHI------------------------ 43
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
LGLPIGQH+ LS I+ V R YTPV+SD+
Sbjct: 44 ---------------------------LGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDK 76
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
G++DLVVKVYFK HPKFP GGKMSQ+LENM +G+ I GP G L Y G G+F IRA
Sbjct: 77 GFVDLVVKVYFKETHPKFPAGGKMSQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRA-D 135
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
KK P V + MIAGGTGITPMLQ++R + KDP D+T L+FANQ
Sbjct: 136 KKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQ 184
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLPIGQH+ LS I+ V R YTPV+SD+ G++DLVVK
Sbjct: 44 LGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDKGFVDLVVK 84
>pdb|1QX4|A Chain A, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
pdb|1QX4|B Chain B, Structrue Of S127p Mutant Of Cytochrome B5 Reductase
Length = 274
Score = 187 bits (474), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/229 (45%), Positives = 128/229 (55%), Gaps = 52/229 (22%)
Query: 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
TL +PD+K PL+L +K ++HDTR FRF LPS +H+
Sbjct: 8 TLENPDIKYPLRLIDKEILSHDTRRFRFALPSPQHI------------------------ 43
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
LGLPIGQH+ LS I+ V R YTPV+SD+
Sbjct: 44 ---------------------------LGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDK 76
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
G++DLVVKVYFK HPKFP GGKM Q+LENM +G+ I GP G L Y G G+F IRA
Sbjct: 77 GFVDLVVKVYFKETHPKFPAGGKMPQYLENMNIGDTIEFRGPNGLLVYQGKGKFAIRA-D 135
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
KK P V + MIAGGTGITPMLQ++R + KDP D+T L+FANQ
Sbjct: 136 KKSNPVVRTVKSVGMIAGGTGITPMLQVIRAVLKDPNDHTVCYLLFANQ 184
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/41 (60%), Positives = 31/41 (75%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLPIGQH+ LS I+ V R YTPV+SD+ G++DLVVK
Sbjct: 44 LGLPIGQHIYLSTRIDGNLVIRPYTPVSSDDDKGFVDLVVK 84
>pdb|1UMK|A Chain A, The Structure Of Human Erythrocyte Nadh-Cytochrome B5
Reductase
Length = 275
Score = 187 bits (474), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 130/229 (56%), Gaps = 52/229 (22%)
Query: 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
TL PD+K PL+L ++ I+HDTR FRF LPS +H+
Sbjct: 9 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHI------------------------ 44
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
LGLP+GQH+ LSA I+ V R YTP++SD+
Sbjct: 45 ---------------------------LGLPVGQHIYLSARIDGNLVVRPYTPISSDDDK 77
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I GP G L Y G G+F IR
Sbjct: 78 GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKFAIRP-D 136
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
KK P V + MIAGGTGITPMLQ++R I KDP D+T L+FANQ
Sbjct: 137 KKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 185
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLP+GQH+ LSA I+ V R YTP++SD+ G++DLV+K
Sbjct: 45 LGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIK 85
>pdb|1CNE|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 59/230 (25%)
Query: 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
L +P ++ +L K E++ D R FRF LPS + V
Sbjct: 5 ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQV------------------------ 40
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
LGLPIG+H+ + ATI + RAYTP + +
Sbjct: 41 ---------------------------LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEI 73
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G G F I
Sbjct: 74 GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQ 133
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
+ +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 134 R-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLPIG+H+ + ATI + RAYTP + + G+ DL+VK
Sbjct: 41 LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVK 81
>pdb|1CNF|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
pdb|2CND|A Chain A, Structural Studies On Corn Nitrate Reductase: Refined
Structure Of The Cytochrome B Reductase Fragment At 2.5
Angstroms, Its Adp Complex And An Active Site Mutant And
Modeling Of The Cytochrome B Domain
Length = 270
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 117/230 (50%), Gaps = 59/230 (25%)
Query: 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
L +P ++ +L K E++ D R FRF LPS + V
Sbjct: 5 ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQV------------------------ 40
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
LGLPIG+H+ + ATI + RAYTP + +
Sbjct: 41 ---------------------------LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEI 73
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G G F I
Sbjct: 74 GHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGKQ 133
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
+ +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 134 R-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLPIG+H+ + ATI + RAYTP + + G+ DL+VK
Sbjct: 41 LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVK 81
>pdb|2EIX|A Chain A, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
pdb|2EIX|B Chain B, The Structure Of Physarum Polycephalum Cytochrome B5
Reductase
Length = 243
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 108/226 (47%), Gaps = 77/226 (34%)
Query: 88 VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTP 147
++P+ L+EK INH+TR FRF L E V+
Sbjct: 6 LNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVV------------------------- 40
Query: 148 FQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGY 207
GLPIGQH+S+ AT++ + + R YTPV+SD+ GY
Sbjct: 41 --------------------------GLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGY 74
Query: 208 MDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKK 267
DL++KVY K G+MSQ+++++ G+ + V GP+G+ Y N
Sbjct: 75 FDLIIKVYEK---------GQMSQYIDHLNPGDFLQVRGPKGQFDYKPN----------- 114
Query: 268 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
V ++ MIAGGTGITPMLQ+ R I K+P + T ++LIFAN
Sbjct: 115 ------MVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFAN 154
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 33/41 (80%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
+GLPIGQH+S+ AT++ + + R YTPV+SD+ GY DL++K
Sbjct: 40 VGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIK 80
>pdb|1TVC|A Chain A, Fad And Nadh Binding Domain Of Methane Monooxygenase
Reductase From Methylococcus Capsulatus (Bath)
Length = 250
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 55/123 (44%), Gaps = 29/123 (23%)
Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-M 236
GQ + L+ D V+R+Y+P G ++ +++V P+G + S +L N
Sbjct: 47 GQFMDLTIPGTD--VSRSYSPANLPNPEGRLEFLIRV--------LPEG-RFSDYLRNDA 95
Query: 237 KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRH 296
+VG+ ++V GP G G + +AGGTG+ P++ +VR
Sbjct: 96 RVGQVLSVKGPLGVFGLKERG-----------------MAPRYFVAGGTGLAPVVSMVRQ 138
Query: 297 ITK 299
+ +
Sbjct: 139 MQE 141
>pdb|1OGI|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly And Ala 160 Replaced By Thr (T155g-A160t)
Length = 303
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKD 172
>pdb|2VYQ|A Chain A, Ferredoxin:nadp Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro
And Tyr 303 Replaced By Ser (T155g-A160t-L263p-Y303s)
pdb|2VZL|A Chain A, Ferredoxin-Nadp Reductase (Mutations: T155g, A160t, L263p
And Y303s) Complexed With Nad By Cocrystallization
Length = 304
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKD 173
>pdb|1H42|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr And Leu 263 Replaced By Pro
(T155g-A160t-L263p)
Length = 304
Score = 36.2 bits (82), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKD 173
>pdb|2BMW|A Chain A, Ferredoxin: Nadp+reductase Mutant With Thr 155 Replaced By
Gly, Ala 160 Replaced By Thr, Leu 263 Replaced By Pro,
Arg 264 Replaced By Pro And Gly 265 Replaced By Pro
(T155g- A160t-L263p-R264p-G265p)
Length = 304
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+AGGTGITPM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLAGGTGITPMRTYLWRMFKD 173
>pdb|2PIA|A Chain A, Phthalate Dioxygenase Reductase: A Modular Structure For
Electron Transfer From Pyridine Nucleotides To [2fe-2s]
Length = 321
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 19/72 (26%)
Query: 226 GGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 285
GG +S F+++ G+ + VS PR EF P + + ++AGG
Sbjct: 81 GGSIS-FIDDTSEGDAVEVSLPRN--------EF----------PLDKRAKSFILVAGGI 121
Query: 286 GITPMLQLVRHI 297
GITPML + R +
Sbjct: 122 GITPMLSMARQL 133
>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase
pdb|1KRH|B Chain B, X-Ray Stucture Of Benzoate Dioxygenase Reductase
Length = 338
Score = 35.0 bits (79), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 19/70 (27%)
Query: 227 GKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 285
GKMS++L K G+ ++ +GP G F++R V + + M+AGGT
Sbjct: 179 GKMSEYLSVQAKAGDKMSFTGPFG--------SFYLRDVKRP----------VLMLAGGT 220
Query: 286 GITPMLQLVR 295
GI P L +++
Sbjct: 221 GIAPFLSMLQ 230
>pdb|1BQE|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Thr 155 Replaced By
Gly (T155g)
Length = 295
Score = 34.3 bits (77), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+AGGTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLAGGTGIAPMRTYLWRMFKD 164
>pdb|3JQQ|A Chain A, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|B Chain B, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|C Chain C, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|D Chain D, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|E Chain E, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
pdb|3JQQ|F Chain F, Crystal Structure Of The H286k Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum In Complex With
2'p- Amp
Length = 316
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 221 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 280
P + G S F++N+K+ + I ++G G L N A+ K T
Sbjct: 130 PNITNYGYCSGFIKNLKINDDIYLTGAHGYFN-LPND-----AIQKN--------TNFIF 175
Query: 281 IAGGTGITPMLQLVRHI 297
IA GTGI+P + ++ +
Sbjct: 176 IATGTGISPYISFLKKL 192
>pdb|2OK7|A Chain A, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|B Chain B, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|C Chain C, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|D Chain D, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|E Chain E, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK7|F Chain F, Ferredoxin-Nadp+ Reductase From Plasmodium Falciparum With
2'p-Amp
pdb|2OK8|A Chain A, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|B Chain B, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|C Chain C, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
pdb|2OK8|D Chain D, Ferredoxin-nadp+ Reductase From Plasmodium Falciparum
Length = 316
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 221 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 280
P + G S F++N+K+ + I ++G G L N A+ K T
Sbjct: 130 PNITNYGYCSGFIKNLKINDDIYLTGAHGYFN-LPND-----AIQKN--------TNFIF 175
Query: 281 IAGGTGITPMLQLVRHI 297
IA GTGI+P + ++ +
Sbjct: 176 IATGTGISPYISFLKKL 192
>pdb|3JQP|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|B Chain B, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|C Chain C, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|D Chain D, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|E Chain E, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQP|F Chain F, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum With 2'p-Amp
pdb|3JQR|A Chain A, Crystal Structure Of The H286l Mutant Of Ferredoxin-Nadp+
Reductase From Plasmodium Falciparum
Length = 316
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 14/77 (18%)
Query: 221 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSM 280
P + G S F++N+K+ + I ++G G L N A+ K T
Sbjct: 130 PNITNYGYCSGFIKNLKINDDIYLTGAHGYFN-LPND-----AIQKN--------TNFIF 175
Query: 281 IAGGTGITPMLQLVRHI 297
IA GTGI+P + ++ +
Sbjct: 176 IATGTGISPYISFLKKL 192
>pdb|1JB9|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms
Length = 316
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
G S FL N K G+ I ++GP G++ L P + T + MIA GTG
Sbjct: 132 GVCSNFLCNSKPGDKIQLTGPSGKIMLL--------------PEEDPNATHI-MIATGTG 176
Query: 287 ITPMLQLVRHITKDPTDNTKMS 308
+ P +R + + N +
Sbjct: 177 VAPFRGYLRRMFMEDVPNYRFG 198
>pdb|3LVB|A Chain A, Crystal Structure Of The Ferredoxin:nadp+ Reductase From
Maize Root At 1.7 Angstroms - Test Set Withheld
Length = 311
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
G S FL N K G+ I ++GP G++ L P + T + MIA GTG
Sbjct: 127 GVCSNFLCNSKPGDKIQLTGPSGKIMLL--------------PEEDPNATHI-MIATGTG 171
Query: 287 ITPMLQLVRHITKDPTDNTKMS 308
+ P +R + + N +
Sbjct: 172 VAPFRGYLRRMFMEDVPNYRFG 193
>pdb|3LO8|A Chain A, Crystal Structure Of The Oxidized Form Of Ferredoxin:nadp+
Reductase From Maize Root At 1.05 Angstroms
Length = 311
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
G S FL N K G+ I ++GP G++ L P + T + MIA GTG
Sbjct: 127 GVCSNFLCNSKPGDKIQLTGPSGKIMLL--------------PEEDPNATHI-MIATGTG 171
Query: 287 ITPMLQLVRHITKDPTDNTKMS 308
+ P +R + + N +
Sbjct: 172 VAPFRGYLRRMFMEDVPNYRFG 193
>pdb|1W35|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: Y 303 W)
pdb|1W87|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
pdb|1W87|B Chain B, Ferredoxin-Nadp Reductase (Mutation: Y 303 W) Complexed
With Nadp By Cocrystallization
Length = 304
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1EWY|A Chain A, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
pdb|1EWY|B Chain B, Anabaena Pcc7119 Ferredoxin:ferredoxin-Nadp+-Reductase
Complex
Length = 303
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 172
>pdb|1W34|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S)
Length = 304
Score = 31.6 bits (70), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1GR1|A Chain A, Structure Of Ferredoxin-Nadp+ Reductase With Glu 139
Replaced By Lys (E139k)
Length = 303
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKKMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 172
>pdb|1QUE|A Chain A, X-Ray Structure Of The Ferredoxin:nadp+ Reductase From The
Cyanobacterium Anabaena Pcc 7119 At 1.8 Angstroms
Length = 303
Score = 31.6 bits (70), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 172
>pdb|1H85|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Val 136 Replaced By
Leu (V136l)
Length = 295
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPL 128
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 164
>pdb|1QUF|A Chain A, X-Ray Structure Of A Complex Nadp+-Ferredoxin:nadp+
Reductase From The Cyanobacterium Anabaena Pcc 7119 At
2.25 Angstroms
Length = 304
Score = 31.6 bits (70), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1GO2|A Chain A, Structure Of Ferredoxin-nadp+ Reductase With Lys 72
Replaced By Glu (k72e)
Length = 304
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1GJR|A Chain A, Ferredoxin-Nadp+ Reductase Complexed With Nadp+ By
Cocrystallization
Length = 304
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1E64|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Gln (K75q)
Length = 304
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1E63|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Ser (K75s)
Length = 304
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1B2R|A Chain A, Ferredoxin-Nadp+ Reductase (Mutation: E 301 A)
Length = 304
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|2X3U|A Chain A, Ferredoxin-Nadp Reductase Mutant With Tyr 303 Replaced By
Phe (Y303f)
Length = 303
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 172
>pdb|1E62|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Arg (K75r)
Length = 304
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 78 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 137
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 138 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 173
>pdb|1BJK|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Arg 264 Replaced By
Glu (r264e)
Length = 295
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 164
>pdb|1QGY|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Lys 75 Replaced By
Glu (K75e)
Length = 295
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 164
>pdb|4G1B|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|B Chain B, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|C Chain C, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1B|D Chain D, X-Ray Structure Of Yeast Flavohemoglobin In Complex With
Econazole
pdb|4G1V|A Chain A, X-Ray Structure Of Yeast Flavohemoglobin
Length = 399
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 24/133 (18%)
Query: 174 GLPI--GQHLSLSA----TINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG 227
LPI GQ+++++ N R Y+ ++ +G L V + FP G
Sbjct: 181 SLPITPGQYITVNTHPIRQENQYDALRHYSLCSASTKNG---LRFAVKMEAARENFP-AG 236
Query: 228 KMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
+S++L ++ KVG+ I +S P G A N E + + + P L +++ G G
Sbjct: 237 LVSEYLHKDAKVGDEIKLSAPAGDFAI--NKEL----IHQNEVP-------LVLLSSGVG 283
Query: 287 ITPMLQLVRHITK 299
+TP+L ++ K
Sbjct: 284 VTPLLAMLEEQVK 296
>pdb|1OGJ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 263 Replaced By
Pro (L263p)
Length = 303
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 172
>pdb|1QH0|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 76 Mutated By
Asp And Leu 78 Mutated By Asp
Length = 295
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 164
>pdb|1QGZ|A Chain A, Ferredoxin:nadp+ Reductase Mutant With Leu 78 Replaced By
Asp (L78d)
Length = 295
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G+ S +L +++ G + ++GP
Sbjct: 69 RDYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPV 128
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 129 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 164
>pdb|2BSA|A Chain A, Ferredoxin-Nadp Reductase (Mutation: Y 303 S) Complexed
With Nadp
Length = 303
Score = 31.2 bits (69), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 21/112 (18%)
Query: 194 RAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-----MSQFLENMKVGEPINVSGPR 248
R Y+ ++ D + + + + K P+ G S +L +++ G + ++GP
Sbjct: 77 RLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGATVYGVCSTYLTHIEPGSEVKITGPV 136
Query: 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300
G+ L + DP N+ M+A GTGI PM + + KD
Sbjct: 137 GKEMLLPD-----------DPEANV-----IMLATGTGIAPMRTYLWRMFKD 172
>pdb|3OZU|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Miconazole
pdb|3OZV|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZV|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Econazole
pdb|3OZW|A Chain A, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
pdb|3OZW|B Chain B, The Crystal Structure Of Flavohemoglobin From R. Eutrophus
In Complex With Ketoconazole
Length = 403
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 227 GKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 285
G +S L +++ VG+ + ++ P G FHI +K T + +I+GG
Sbjct: 234 GYVSNLLHDHVNVGDQVKLAAPYG--------SFHIDVDAK---------TPIVLISGGV 276
Query: 286 GITPMLQLVRHITKDP 301
G+TPM+ +++ + P
Sbjct: 277 GLTPMVSMLKVALQAP 292
>pdb|1CQX|A Chain A, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
pdb|1CQX|B Chain B, Crystal Structure Of The Flavohemoglobin From Alcaligenes
Eutrophus At 1.75 A Resolution
Length = 403
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 18/76 (23%)
Query: 227 GKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGT 285
G +S L +++ VG+ + ++ P G FHI +K T + +I+GG
Sbjct: 234 GYVSNLLHDHVNVGDQVKLAAPYG--------SFHIDVDAK---------TPIVLISGGV 276
Query: 286 GITPMLQLVRHITKDP 301
G+TPM+ +++ + P
Sbjct: 277 GLTPMVSMLKVALQAP 292
>pdb|2XNJ|A Chain A, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
pdb|2XNJ|B Chain B, Crystal Structure Of An Engineered Ferredoxin(Flavodoxin)
Nadp(H) Reductase (Fpr) From Escherichia Coli
Length = 266
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 56/146 (38%), Gaps = 21/146 (14%)
Query: 150 RVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 209
+V W + S P F GQ L I+ E V RAY+ V S ++
Sbjct: 21 KVQNWTDALFSLTVHAPVLPFT-----AGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEF 75
Query: 210 LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDP 269
+V V + N + G K+S L +K G+ + V G F + V +
Sbjct: 76 YLVTVVYTNDAGEVVKG-KLSPRLAALKPGDEVQVVSE-------AAGFFVLDEVPHCE- 126
Query: 270 PTNLKVTQLSMIAGGTGITPMLQLVR 295
L M+A GT I P L ++R
Sbjct: 127 -------TLWMLATGTAIGPYLSILR 145
>pdb|3EZY|A Chain A, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|B Chain B, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|C Chain C, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
pdb|3EZY|D Chain D, Crystal Structure Of Probable Dehydrogenase Tm_0414 From
Thermotoga Maritima
Length = 344
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 228 KMSQFLENMKVGEPINVSGPRGRLAYL 254
++ F++N+K GEP VSG G++A L
Sbjct: 288 ELKTFIKNVKSGEPPAVSGEDGKMALL 314
>pdb|1FDR|A Chain A, Flavodoxin Reductase From E. Coli
Length = 248
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 55/146 (37%), Gaps = 30/146 (20%)
Query: 150 RVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 209
+V W + S P F GQ L I+ E V RAY+ V S ++
Sbjct: 11 KVQNWTDALFSLTVHAPVLPFT-----AGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEF 65
Query: 210 LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDP 269
+V V PDG K+S L +K G+ + V G F + V +
Sbjct: 66 YLVTV---------PDG-KLSPRLAALKPGDEVQVVSE-------AAGFFVLDEVPHCE- 107
Query: 270 PTNLKVTQLSMIAGGTGITPMLQLVR 295
L M+A GT I P L ++R
Sbjct: 108 -------TLWMLATGTAIGPYLSILR 126
>pdb|1E9Y|B Chain B, Crystal Structure Of Helicobacter Pylori Urease In Complex
With Acetohydroxamic Acid
Length = 569
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 235 NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
N+ VG G + G + HI +S + PT +MI GGTG
Sbjct: 111 NLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTG 162
>pdb|1E9Z|B Chain B, Crystal Structure Of Helicobacter Pylori Urease
Length = 569
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 235 NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTG 286
N+ VG G + G + HI +S + PT +MI GGTG
Sbjct: 111 NLSVGPATEALAGEGLIVTAGGIDTHIHFISPQQIPTAFASGVTTMIGGGTG 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,073,491
Number of Sequences: 62578
Number of extensions: 354225
Number of successful extensions: 684
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 63
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)