Query psy5567
Match_columns 314
No_of_seqs 314 out of 1777
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:47:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5567.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5567hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0534|consensus 100.0 3.7E-34 7.9E-39 270.4 18.1 156 82-314 40-195 (286)
2 PTZ00319 NADH-cytochrome B5 re 100.0 4.3E-30 9.2E-35 244.2 22.2 179 83-314 23-205 (300)
3 PLN02252 nitrate reductase [NA 100.0 2.5E-30 5.4E-35 275.9 22.3 172 85-314 626-797 (888)
4 PTZ00274 cytochrome b5 reducta 99.9 3.1E-26 6.7E-31 220.7 20.1 149 88-314 47-203 (325)
5 COG1018 Hmp Flavodoxin reducta 99.9 9.3E-26 2E-30 212.0 19.1 144 91-314 3-147 (266)
6 cd06188 NADH_quinone_reductase 99.9 1.1E-25 2.4E-30 211.1 14.8 153 91-314 7-189 (283)
7 cd06183 cyt_b5_reduct_like Cyt 99.9 4.9E-25 1.1E-29 198.6 16.9 142 96-314 1-143 (234)
8 PRK10926 ferredoxin-NADP reduc 99.9 9.3E-25 2E-29 201.8 19.0 142 92-314 3-144 (248)
9 cd06217 FNR_iron_sulfur_bindin 99.9 8.4E-25 1.8E-29 197.8 18.1 143 93-314 1-145 (235)
10 cd06184 flavohem_like_fad_nad_ 99.9 1.7E-24 3.7E-29 197.9 19.4 145 91-314 4-151 (247)
11 cd06211 phenol_2-monooxygenase 99.9 1.4E-24 3E-29 198.0 18.6 144 90-314 3-147 (238)
12 cd06209 BenDO_FAD_NAD Benzoate 99.9 1.5E-24 3.2E-29 196.2 17.8 138 94-314 2-140 (228)
13 cd06215 FNR_iron_sulfur_bindin 99.9 1.5E-24 3.3E-29 195.6 17.7 140 96-314 1-141 (231)
14 PRK08345 cytochrome-c3 hydroge 99.9 1.1E-24 2.3E-29 205.8 17.2 147 89-314 1-147 (289)
15 PRK10684 HCP oxidoreductase, N 99.9 1.2E-24 2.7E-29 208.6 17.6 143 90-314 6-149 (332)
16 cd06191 FNR_iron_sulfur_bindin 99.9 2.1E-24 4.5E-29 195.6 18.0 139 96-314 1-140 (231)
17 cd06210 MMO_FAD_NAD_binding Me 99.9 1.8E-24 4E-29 196.2 17.5 144 94-314 2-146 (236)
18 PRK11872 antC anthranilate dio 99.9 1.8E-24 3.9E-29 208.6 18.4 144 90-314 103-247 (340)
19 cd06216 FNR_iron_sulfur_bindin 99.9 3.8E-24 8.3E-29 195.4 19.5 144 91-314 15-160 (243)
20 PRK13289 bifunctional nitric o 99.9 2E-24 4.4E-29 210.9 18.9 145 91-314 152-299 (399)
21 cd06213 oxygenase_e_transfer_s 99.9 3.8E-24 8.3E-29 193.6 17.6 136 95-314 2-138 (227)
22 cd06195 FNR1 Ferredoxin-NADP+ 99.9 2.5E-24 5.3E-29 196.5 16.2 137 97-314 1-139 (241)
23 TIGR02160 PA_CoA_Oxy5 phenylac 99.9 4.5E-24 9.8E-29 205.7 18.8 146 93-314 1-147 (352)
24 PRK07609 CDP-6-deoxy-delta-3,4 99.9 4E-24 8.7E-29 205.1 18.2 143 90-314 99-242 (339)
25 cd06212 monooxygenase_like The 99.9 4E-24 8.6E-29 193.8 17.3 139 95-314 2-141 (232)
26 cd06189 flavin_oxioreductase N 99.9 6.1E-24 1.3E-28 191.9 17.2 135 96-314 1-136 (224)
27 cd06196 FNR_like_1 Ferredoxin 99.9 5.2E-24 1.1E-28 191.1 16.1 135 95-314 2-137 (218)
28 cd06214 PA_degradation_oxidore 99.9 1.1E-23 2.3E-28 191.5 18.1 145 93-314 1-146 (241)
29 cd00322 FNR_like Ferredoxin re 99.9 7.5E-24 1.6E-28 188.7 16.3 114 174-314 22-135 (223)
30 cd06190 T4MO_e_transfer_like T 99.9 9.9E-24 2.2E-28 191.0 15.7 135 98-314 1-137 (232)
31 PRK05802 hypothetical protein; 99.9 1.8E-23 3.9E-28 201.0 18.3 148 90-314 61-208 (320)
32 cd06187 O2ase_reductase_like T 99.9 1.8E-23 3.8E-28 187.9 16.5 135 98-314 1-136 (224)
33 PRK05464 Na(+)-translocating N 99.9 2.4E-23 5.3E-28 205.4 17.7 153 92-314 132-313 (409)
34 PTZ00306 NADH-dependent fumara 99.9 3.8E-23 8.2E-28 227.0 20.5 163 82-314 903-1072(1167)
35 PRK05713 hypothetical protein; 99.9 3.4E-23 7.4E-28 197.2 16.7 140 93-314 91-230 (312)
36 PRK08051 fre FMN reductase; Va 99.9 6.9E-23 1.5E-27 186.9 17.3 138 93-314 2-140 (232)
37 cd06197 FNR_like_2 FAD/NAD(P) 99.9 3E-23 6.4E-28 188.6 14.4 139 100-314 2-164 (220)
38 cd06192 DHOD_e_trans_like FAD/ 99.9 6.2E-23 1.3E-27 187.9 16.3 133 98-314 1-133 (243)
39 TIGR01941 nqrF NADH:ubiquinone 99.9 3.2E-23 6.9E-28 204.4 15.2 153 91-314 127-309 (405)
40 cd06201 SiR_like2 Cytochrome p 99.9 5.8E-23 1.3E-27 194.2 16.3 143 91-314 43-190 (289)
41 COG0543 UbiB 2-polyprenylpheno 99.9 9.6E-23 2.1E-27 189.6 17.1 137 95-314 9-145 (252)
42 cd06194 FNR_N-term_Iron_sulfur 99.9 1E-22 2.2E-27 183.2 16.1 134 98-314 1-135 (222)
43 cd06221 sulfite_reductase_like 99.9 8.6E-23 1.9E-27 189.0 15.6 137 98-314 1-137 (253)
44 cd06208 CYPOR_like_FNR These f 99.9 1.6E-22 3.5E-27 190.4 17.6 155 90-314 5-178 (286)
45 PLN03116 ferredoxin--NADP+ red 99.9 2E-22 4.2E-27 192.1 18.2 160 86-314 17-199 (307)
46 PRK00054 dihydroorotate dehydr 99.9 2.4E-22 5.3E-27 185.3 17.9 136 92-314 3-138 (250)
47 PRK08221 anaerobic sulfite red 99.9 1.3E-22 2.9E-27 189.2 16.2 134 93-314 7-140 (263)
48 cd06218 DHOD_e_trans FAD/NAD b 99.9 1.9E-22 4.2E-27 186.0 15.9 133 98-314 1-134 (246)
49 TIGR03224 benzo_boxA benzoyl-C 99.9 3.7E-22 7.9E-27 197.8 18.0 164 81-314 130-308 (411)
50 cd06193 siderophore_interactin 99.9 1.8E-22 3.9E-27 184.6 14.4 135 98-314 1-155 (235)
51 cd06185 PDR_like Phthalate dio 99.9 3.6E-22 7.8E-27 178.1 15.6 132 99-314 1-134 (211)
52 cd06198 FNR_like_3 NAD(P) bind 99.9 5.5E-22 1.2E-26 178.0 15.7 111 174-314 22-133 (216)
53 PRK06222 ferredoxin-NADP(+) re 99.9 7.5E-22 1.6E-26 185.8 16.9 132 96-314 2-134 (281)
54 cd06219 DHOD_e_trans_like1 FAD 99.9 7.1E-22 1.5E-26 182.2 16.0 132 96-314 1-133 (248)
55 TIGR02911 sulfite_red_B sulfit 99.9 1.2E-21 2.7E-26 182.5 16.4 133 94-314 6-138 (261)
56 PLN03115 ferredoxin--NADP(+) r 99.9 5.3E-21 1.2E-25 187.2 18.4 160 85-314 82-258 (367)
57 cd06220 DHOD_e_trans_like2 FAD 99.9 3.9E-21 8.4E-26 175.4 16.2 123 96-314 1-123 (233)
58 PF00970 FAD_binding_6: Oxidor 99.9 4.7E-21 1E-25 152.4 13.3 99 95-253 1-99 (99)
59 cd06182 CYPOR_like NADPH cytoc 99.9 5.2E-21 1.1E-25 179.1 15.3 122 174-314 31-157 (267)
60 cd06200 SiR_like1 Cytochrome p 99.9 1.5E-20 3.3E-25 173.4 15.8 115 174-314 31-146 (245)
61 cd06186 NOX_Duox_like_FAD_NADP 99.8 7.1E-20 1.5E-24 163.2 14.3 114 174-314 24-148 (210)
62 PRK12778 putative bifunctional 99.8 4E-19 8.6E-24 187.5 16.9 132 96-314 2-134 (752)
63 PLN02292 ferric-chelate reduct 99.8 8.2E-18 1.8E-22 176.0 17.5 139 94-314 325-474 (702)
64 PRK12779 putative bifunctional 99.8 8.9E-18 1.9E-22 181.3 18.1 139 92-314 647-786 (944)
65 PRK12775 putative trifunctiona 99.7 2.1E-17 4.5E-22 179.5 16.7 132 96-314 2-135 (1006)
66 PLN02631 ferric-chelate reduct 99.7 1.5E-16 3.2E-21 166.5 17.4 113 174-314 334-455 (699)
67 COG4097 Predicted ferric reduc 99.7 4.3E-17 9.2E-22 157.9 11.4 138 92-314 214-353 (438)
68 PLN02844 oxidoreductase/ferric 99.6 5.4E-15 1.2E-19 155.4 18.6 113 174-314 338-466 (722)
69 cd06207 CyPoR_like NADPH cytoc 99.6 3E-15 6.6E-20 146.8 11.5 107 191-314 162-272 (382)
70 cd06199 SiR Cytochrome p450- l 99.6 1.9E-15 4.1E-20 147.3 9.4 119 174-314 131-251 (360)
71 TIGR01931 cysJ sulfite reducta 99.6 1.6E-15 3.5E-20 156.9 9.2 119 174-314 368-488 (597)
72 cd06206 bifunctional_CYPOR The 99.6 1.9E-15 4.2E-20 148.3 8.0 120 174-314 146-272 (384)
73 COG2871 NqrF Na+-transporting 99.6 3.1E-15 6.6E-20 141.1 8.1 175 92-314 133-314 (410)
74 PRK10953 cysJ sulfite reductas 99.5 4E-14 8.7E-19 146.6 9.5 119 174-314 371-491 (600)
75 cd06203 methionine_synthase_re 99.5 6.4E-14 1.4E-18 138.4 10.2 102 191-314 172-285 (398)
76 PRK06567 putative bifunctional 99.5 5.1E-13 1.1E-17 143.7 16.6 125 92-301 789-916 (1028)
77 cd06202 Nitric_oxide_synthase 99.5 2.4E-13 5.3E-18 134.6 11.1 107 192-314 176-292 (406)
78 KOG3378|consensus 99.4 2.1E-13 4.6E-18 128.0 8.6 136 91-299 147-286 (385)
79 cd06204 CYPOR NADPH cytochrome 99.4 3.6E-13 7.8E-18 133.8 10.5 107 191-314 176-307 (416)
80 PRK06214 sulfite reductase; Pr 99.4 1.6E-12 3.5E-17 133.0 12.4 106 191-314 314-421 (530)
81 KOG0039|consensus 99.2 6.7E-11 1.4E-15 123.8 13.8 125 93-300 354-491 (646)
82 COG0369 CysJ Sulfite reductase 99.2 9.3E-11 2E-15 121.2 11.1 106 191-314 371-478 (587)
83 KOG0534|consensus 99.2 2.1E-11 4.5E-16 116.0 5.3 51 1-51 78-128 (286)
84 COG2375 ViuB Siderophore-inter 98.9 2.6E-08 5.6E-13 93.9 14.3 133 91-300 15-168 (265)
85 KOG1159|consensus 98.9 7.6E-09 1.7E-13 103.7 10.0 103 192-314 367-469 (574)
86 PF08021 FAD_binding_9: Sidero 98.9 1.6E-08 3.5E-13 84.3 9.6 95 97-250 1-116 (117)
87 KOG1158|consensus 98.8 7.3E-09 1.6E-13 107.9 8.7 109 191-314 420-534 (645)
88 PF08022 FAD_binding_8: FAD-bi 98.5 1.5E-08 3.2E-13 82.5 -0.8 64 174-249 29-102 (105)
89 PF00970 FAD_binding_6: Oxidor 98.4 3.7E-07 8.1E-12 72.3 5.7 49 3-51 28-76 (99)
90 PLN02252 nitrate reductase [NA 97.8 2.4E-05 5.2E-10 85.0 5.9 45 2-46 662-706 (888)
91 cd06183 cyt_b5_reduct_like Cyt 97.0 0.00082 1.8E-08 60.4 4.5 47 3-49 27-73 (234)
92 PTZ00319 NADH-cytochrome B5 re 97.0 0.0012 2.5E-08 63.2 5.6 43 3-45 62-108 (300)
93 PTZ00274 cytochrome b5 reducta 96.9 0.0015 3.2E-08 63.5 5.6 49 3-51 80-131 (325)
94 cd06217 FNR_iron_sulfur_bindin 96.6 0.0034 7.4E-08 56.6 5.6 47 3-49 29-76 (235)
95 cd06195 FNR1 Ferredoxin-NADP+ 96.6 0.0028 6E-08 57.8 4.7 46 3-49 23-69 (241)
96 cd06215 FNR_iron_sulfur_bindin 96.6 0.004 8.8E-08 56.0 5.6 47 3-49 26-72 (231)
97 cd00322 FNR_like Ferredoxin re 96.5 0.0035 7.5E-08 55.6 4.8 47 3-49 21-67 (223)
98 cd06216 FNR_iron_sulfur_bindin 96.4 0.0064 1.4E-07 55.5 6.1 46 4-49 45-91 (243)
99 PTZ00306 NADH-dependent fumara 96.4 0.0043 9.3E-08 69.6 5.6 41 3-43 946-986 (1167)
100 cd06214 PA_degradation_oxidore 96.3 0.0068 1.5E-07 55.0 5.3 46 3-49 31-76 (241)
101 cd06191 FNR_iron_sulfur_bindin 96.3 0.0082 1.8E-07 54.3 5.8 45 4-49 27-71 (231)
102 cd06212 monooxygenase_like The 96.0 0.008 1.7E-07 54.4 4.2 44 3-48 28-71 (232)
103 PRK10926 ferredoxin-NADP reduc 95.9 0.014 3.1E-07 53.9 5.6 44 5-49 31-74 (248)
104 PRK10684 HCP oxidoreductase, N 95.9 0.013 2.9E-07 56.4 5.5 46 4-50 36-81 (332)
105 cd06196 FNR_like_1 Ferredoxin 95.9 0.01 2.3E-07 53.0 4.4 44 3-47 26-70 (218)
106 cd06209 BenDO_FAD_NAD Benzoate 95.9 0.01 2.2E-07 53.6 4.3 45 3-50 29-73 (228)
107 TIGR02160 PA_CoA_Oxy5 phenylac 95.8 0.015 3.3E-07 56.3 5.7 45 4-49 32-76 (352)
108 cd06213 oxygenase_e_transfer_s 95.7 0.013 2.8E-07 53.0 4.5 44 4-49 27-70 (227)
109 cd06210 MMO_FAD_NAD_binding Me 95.7 0.015 3.2E-07 52.7 4.7 46 3-50 33-78 (236)
110 cd06187 O2ase_reductase_like T 95.7 0.014 3.1E-07 52.2 4.4 46 4-50 23-68 (224)
111 cd06201 SiR_like2 Cytochrome p 95.6 0.012 2.7E-07 55.8 3.9 43 4-49 83-125 (289)
112 PRK11872 antC anthranilate dio 95.5 0.021 4.6E-07 55.3 5.2 45 3-49 135-179 (340)
113 cd06184 flavohem_like_fad_nad_ 95.4 0.026 5.6E-07 51.5 5.4 46 3-49 35-82 (247)
114 cd06211 phenol_2-monooxygenase 95.4 0.019 4E-07 52.4 4.2 45 4-50 35-79 (238)
115 cd06189 flavin_oxioreductase N 95.2 0.024 5.2E-07 51.1 4.4 46 3-51 24-69 (224)
116 cd06190 T4MO_e_transfer_like T 95.0 0.026 5.5E-07 51.0 3.9 44 4-49 23-66 (232)
117 cd06198 FNR_like_3 NAD(P) bind 95.0 0.022 4.9E-07 50.9 3.5 43 3-45 21-63 (216)
118 PRK13289 bifunctional nitric o 94.9 0.037 8E-07 54.4 5.0 47 3-50 183-231 (399)
119 cd06193 siderophore_interactin 94.7 0.027 5.8E-07 51.5 3.1 44 4-47 26-88 (235)
120 cd06188 NADH_quinone_reductase 94.6 0.037 8E-07 52.0 4.0 43 4-46 38-109 (283)
121 cd06194 FNR_N-term_Iron_sulfur 94.2 0.067 1.5E-06 47.9 4.7 45 3-50 22-66 (222)
122 cd06192 DHOD_e_trans_like FAD/ 94.1 0.057 1.2E-06 49.4 4.0 41 4-44 24-64 (243)
123 cd06185 PDR_like Phthalate dio 94.0 0.07 1.5E-06 47.4 4.2 42 4-48 25-66 (211)
124 cd06197 FNR_like_2 FAD/NAD(P) 93.7 0.072 1.6E-06 48.4 3.8 43 3-45 24-85 (220)
125 PRK07609 CDP-6-deoxy-delta-3,4 93.6 0.095 2.1E-06 50.5 4.6 44 3-49 130-173 (339)
126 PRK05713 hypothetical protein; 93.1 0.11 2.4E-06 49.6 4.3 46 3-51 117-162 (312)
127 cd06218 DHOD_e_trans FAD/NAD b 91.4 0.2 4.2E-06 46.3 3.6 43 3-45 23-66 (246)
128 COG1018 Hmp Flavodoxin reducta 91.3 0.32 7E-06 46.1 5.0 44 5-48 35-78 (266)
129 cd06182 CYPOR_like NADPH cytoc 90.7 0.27 5.9E-06 46.2 3.9 43 3-47 30-73 (267)
130 COG0543 UbiB 2-polyprenylpheno 90.7 0.27 5.8E-06 45.9 3.8 46 3-51 34-79 (252)
131 cd06186 NOX_Duox_like_FAD_NADP 90.6 0.3 6.4E-06 43.3 3.8 44 3-46 23-68 (210)
132 PRK05464 Na(+)-translocating N 89.5 0.45 9.7E-06 47.4 4.5 42 4-45 162-232 (409)
133 PRK08051 fre FMN reductase; Va 89.5 0.48 1E-05 43.1 4.3 43 4-49 29-71 (232)
134 cd06221 sulfite_reductase_like 88.3 0.6 1.3E-05 43.2 4.1 40 3-45 26-65 (253)
135 cd06219 DHOD_e_trans_like1 FAD 87.3 0.46 9.9E-06 43.8 2.7 40 4-45 26-65 (248)
136 TIGR01941 nqrF NADH:ubiquinone 86.9 0.63 1.4E-05 46.3 3.6 41 5-45 159-228 (405)
137 PRK08345 cytochrome-c3 hydroge 86.7 0.86 1.9E-05 43.2 4.3 40 3-45 36-75 (289)
138 PRK05802 hypothetical protein; 84.1 1.5 3.2E-05 42.5 4.6 40 5-44 95-134 (320)
139 PRK00054 dihydroorotate dehydr 83.8 1.1 2.4E-05 41.3 3.4 41 3-45 30-70 (250)
140 PRK06222 ferredoxin-NADP(+) re 82.9 1.1 2.4E-05 42.2 3.2 40 4-45 27-66 (281)
141 PLN02292 ferric-chelate reduct 80.8 1.7 3.7E-05 46.8 3.9 41 5-45 352-393 (702)
142 cd06208 CYPOR_like_FNR These f 79.8 1.8 3.8E-05 40.9 3.3 44 4-47 40-92 (286)
143 cd06200 SiR_like1 Cytochrome p 71.8 3.9 8.5E-05 37.7 3.3 40 5-47 32-71 (245)
144 TIGR03224 benzo_boxA benzoyl-C 71.8 4.3 9.3E-05 40.8 3.8 42 5-46 176-225 (411)
145 PRK08221 anaerobic sulfite red 71.7 4.9 0.00011 37.5 4.0 37 4-45 32-68 (263)
146 TIGR02911 sulfite_red_B sulfit 69.5 6.2 0.00014 36.8 4.1 37 4-45 30-66 (261)
147 PF04648 MF_alpha: Yeast matin 66.2 2.7 5.9E-05 22.1 0.6 12 170-181 1-12 (13)
148 PRK12778 putative bifunctional 63.6 7 0.00015 42.1 3.6 39 5-45 28-66 (752)
149 PLN02844 oxidoreductase/ferric 63.0 11 0.00023 40.9 4.9 42 4-45 338-380 (722)
150 PLN03115 ferredoxin--NADP(+) r 61.1 12 0.00026 37.3 4.5 41 4-44 122-170 (367)
151 PF00667 FAD_binding_1: FAD bi 56.2 12 0.00026 33.9 3.4 27 191-217 177-204 (219)
152 PRK00036 primosomal replicatio 55.4 19 0.00041 29.9 4.0 25 225-249 53-77 (107)
153 PF01272 GreA_GreB: Transcript 54.9 18 0.0004 27.4 3.7 60 174-250 5-67 (77)
154 cd06220 DHOD_e_trans_like2 FAD 54.4 13 0.00027 33.8 3.2 36 4-45 23-58 (233)
155 PLN03116 ferredoxin--NADP+ red 49.9 17 0.00036 34.8 3.4 41 5-45 57-107 (307)
156 PRK12779 putative bifunctional 47.6 23 0.00049 39.6 4.4 39 5-45 677-715 (944)
157 PLN02631 ferric-chelate reduct 46.3 25 0.00054 38.1 4.3 41 4-44 334-375 (699)
158 COG0782 Uncharacterized conser 42.2 67 0.0015 27.9 5.6 61 175-249 79-139 (151)
159 TIGR01462 greA transcription e 39.2 71 0.0015 27.5 5.3 63 174-250 80-142 (151)
160 PRK00226 greA transcription el 35.5 87 0.0019 27.1 5.3 64 174-251 85-148 (157)
161 PRK05892 nucleoside diphosphat 35.1 86 0.0019 27.5 5.2 64 175-251 83-147 (158)
162 PRK12775 putative trifunctiona 34.5 48 0.001 37.3 4.4 38 5-44 28-65 (1006)
163 PRK09783 copper/silver efflux 34.1 4.4E+02 0.0095 26.3 10.8 22 227-248 364-385 (409)
164 PF08022 FAD_binding_8: FAD-bi 32.3 15 0.00033 29.5 0.0 42 3-45 28-71 (105)
165 PF00667 FAD_binding_1: FAD bi 30.4 70 0.0015 28.9 4.1 29 90-118 5-38 (219)
166 PRK01885 greB transcription el 28.4 1.4E+02 0.0031 26.0 5.5 60 174-251 85-147 (157)
167 TIGR03784 marine_sortase sorta 26.3 2.3E+02 0.0049 25.2 6.5 32 232-263 105-137 (174)
168 PF12945 YcgR_2: Flagellar pro 24.2 2.5E+02 0.0055 20.8 5.6 61 175-249 1-61 (87)
169 PRK05753 nucleoside diphosphat 24.0 1.5E+02 0.0033 25.3 4.7 59 175-250 55-116 (137)
170 cd05829 Sortase_E Sortase E (S 21.7 4.1E+02 0.0089 22.5 7.0 62 193-262 37-100 (144)
171 cd06166 Sortase_D_5 Sortase D 21.0 2.5E+02 0.0055 23.1 5.4 37 227-263 56-92 (126)
172 COG0521 MoaB Molybdopterin bio 20.6 38 0.00082 30.3 0.4 14 276-289 68-81 (169)
173 PRK02290 3-dehydroquinate synt 20.6 4.5E+02 0.0097 26.3 7.8 42 193-250 222-263 (344)
174 PF01959 DHQS: 3-dehydroquinat 20.5 4.1E+02 0.0089 26.6 7.5 25 226-250 249-273 (354)
No 1
>KOG0534|consensus
Probab=100.00 E-value=3.7e-34 Score=270.38 Aligned_cols=156 Identities=57% Similarity=0.953 Sum_probs=145.4
Q ss_pred cccccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccC
Q psy5567 82 KELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSA 161 (314)
Q Consensus 82 ~~~~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (314)
...+++.|+..|+++++++++.+|||+..|+|.+|.+.+.+
T Consensus 40 ~~~~~~~~~~~~~~~~l~~k~~~shdt~~f~f~lp~~~~~l--------------------------------------- 80 (286)
T KOG0534|consen 40 TGKKTLVDPESYYPFRLIDKTELSHDTSLFRFVLPSADHVL--------------------------------------- 80 (286)
T ss_pred cCcccccCCcceEEEEEEEEEeccCCceeEEEecCCchhcc---------------------------------------
Confidence 56678899999999999999999999999999999887766
Q ss_pred CCCCCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCe
Q psy5567 162 PESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEP 241 (314)
Q Consensus 162 ~~~~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~ 241 (314)
+++.|||+.+.++.++..+.|+|||++.+.+.|+++|+||.| .+|+||+||++|++||+
T Consensus 81 ------------~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y---------~~G~mS~~l~~LkiGd~ 139 (286)
T KOG0534|consen 81 ------------GLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVY---------PKGKMSQHLDSLKIGDT 139 (286)
T ss_pred ------------CcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEec---------cCCcccHHHhcCCCCCE
Confidence 899999999999999999999999999998889999999999 78999999999999999
Q ss_pred EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 242 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 242 v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|++|||.|++.|.++ ..+++.|||||||||||+|++++++.++.|.++++|+|+|+
T Consensus 140 ve~rGP~G~~~~~~~-----------------~~~~l~miAgGtGItPmlqii~~il~~~~d~tki~lly~N~ 195 (286)
T KOG0534|consen 140 VEFRGPIGEFKYDPQ-----------------KAKHLGMIAGGTGITPMLQLIRAILKDPEDTTKISLLYANK 195 (286)
T ss_pred EEEecCccceEecCC-----------------CcceEEEEecccchhhHHHHHHHHhcCCCCCcEEEEEEecC
Confidence 999999997665532 47999999999999999999999999999999999999996
No 2
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=99.97 E-value=4.3e-30 Score=244.22 Aligned_cols=179 Identities=46% Similarity=0.826 Sum_probs=148.9
Q ss_pred ccccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCC
Q psy5567 83 ELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAP 162 (314)
Q Consensus 83 ~~~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (314)
++..-||++.+.+++|+++++++++++.|+|+++++....
T Consensus 23 ~~~~~~~~~~~~~~~v~~~~~~s~d~~~~~~~~~~~~~~~---------------------------------------- 62 (300)
T PTZ00319 23 SPPVALDPDMFQHFKLIKKTEVTHDTFIFRFALHSPTQRL---------------------------------------- 62 (300)
T ss_pred CCccccCcCceEEEEEEEEEEcCCCceEEEEECCCCcccC----------------------------------------
Confidence 3456789999999999999999999999999987553222
Q ss_pred CCCCCcccccCCCCCCcEEEEEeeeCCc----eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCC
Q psy5567 163 ESEPPFHFAWLGLPIGQHLSLSATINDE----FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV 238 (314)
Q Consensus 163 ~~~~~~~~~~~~~~~GQ~v~l~~~~~~~----~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~ 238 (314)
.+.||||++++++.++. ...|+|||++.+.+.+.++|+||++..+.|+.++++|.+|+||+++++
T Consensus 63 -----------~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~~~~~~~~~~~~G~~S~~L~~l~~ 131 (300)
T PTZ00319 63 -----------GLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVYFKGVHPSFPNGGRLSQHLYHMKL 131 (300)
T ss_pred -----------CCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEeccCCCCCCCCCCChhhhhhcCCC
Confidence 78999999999876433 578999999999888999999999866677888889999999999999
Q ss_pred CCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 239 GEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 239 Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
||.|.++||.|.|.|.++|.+.+...+. .-.....++++|||||||||||++|+++++.+..+.++++|+|++|
T Consensus 132 Gd~v~i~gP~G~f~~~~~~~~~~~~~~~--~~~~~~~~~illIAgGtGIaP~~sml~~l~~~~~~~~~i~liyg~r 205 (300)
T PTZ00319 132 GDKIEMRGPVGKFEYLGNGTYTVHKGKG--GLKTMHVDAFAMIAGGTGITPMLQIIHAIKKNKEDRTKVFLVYANQ 205 (300)
T ss_pred CCEEEEEccceeeEecCCcceeeccccc--cccccccceEEEEecCcccCHHHHHHHHHHhCCCCCceEEEEEecC
Confidence 9999999999999888887777654100 0001234689999999999999999999988755567899999986
No 3
>PLN02252 nitrate reductase [NADPH]
Probab=99.97 E-value=2.5e-30 Score=275.88 Aligned_cols=172 Identities=52% Similarity=0.961 Sum_probs=156.3
Q ss_pred ccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCC
Q psy5567 85 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPES 164 (314)
Q Consensus 85 ~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
..+|+|..|.+++|++++.+|+|++.|+|++++....+
T Consensus 626 ~~~l~p~~~~~~~Lv~k~~lS~d~~~f~f~lp~~~~~l------------------------------------------ 663 (888)
T PLN02252 626 PVALNPREKIPCRLVEKISLSHDVRLFRFALPSEDHVL------------------------------------------ 663 (888)
T ss_pred ccccccCceEEEEEEEEEEccCCeEEEEEEECCCcccC------------------------------------------
Confidence 56889999999999999999999999999998765333
Q ss_pred CCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEE
Q psy5567 165 EPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINV 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v 244 (314)
++++|||++|+++.+++.+.|+|||++.+.+.+.++|+||+|+++.|+++|++|.+|++|++|++||.|++
T Consensus 664 ---------gl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~~~~~~~~p~gG~~S~~L~~L~vGd~V~V 734 (888)
T PLN02252 664 ---------GLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYFKNVHPKFPNGGLMSQYLDSLPIGDTIDV 734 (888)
T ss_pred ---------CCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEeccccCccCCCCchhhHHhcCCCCCEEEE
Confidence 78999999999987777889999999999888999999999999999999999999999999999999999
Q ss_pred EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+||+|.|.|.++|.|.++. .....++++|||||||||||+|||++++.++.+.++++|+|+||
T Consensus 735 ~GP~G~f~y~g~G~f~l~~-------~~~~~~~vvmIAGGsGITPi~silr~ll~~~~d~t~i~Liyg~R 797 (888)
T PLN02252 735 KGPLGHIEYAGRGSFLVNG-------KPKFAKKLAMLAGGTGITPMYQVIQAILRDPEDKTEMSLVYANR 797 (888)
T ss_pred ecCccceeecccceeeecc-------ccccCceEEEEecceehhHHHHHHHHHHhccCCCCcEEEEEEEC
Confidence 9999999999999999975 11246899999999999999999999998766678999999997
No 4
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=99.94 E-value=3.1e-26 Score=220.66 Aligned_cols=149 Identities=38% Similarity=0.581 Sum_probs=125.1
Q ss_pred cCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCC
Q psy5567 88 VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPP 167 (314)
Q Consensus 88 l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+..+.|.+++|++++.+|+|++.|+|++|... ..
T Consensus 47 ~~~~~~~~~~V~~i~~~t~dv~~f~f~lp~~~-~~--------------------------------------------- 80 (325)
T PTZ00274 47 VFSQRYEPYQLGEVIPITHDTALFRFLLHSEE-EF--------------------------------------------- 80 (325)
T ss_pred cCCCceEEEEEEEEEEeCCCeEEEEEeCCccc-cc---------------------------------------------
Confidence 33678999999999999999999999987532 11
Q ss_pred cccccCCCCCCcEEEEEeee---CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEE
Q psy5567 168 FHFAWLGLPIGQHLSLSATI---NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINV 244 (314)
Q Consensus 168 ~~~~~~~~~~GQ~v~l~~~~---~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v 244 (314)
.+.||||+.+..+. ++..+.|+|||+|.+.+.++++|+||++ ++|.+|+||+++++||+|++
T Consensus 81 ------~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~---------~~G~~S~~L~~lk~Gd~v~v 145 (325)
T PTZ00274 81 ------NLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRK---------KDGLMTNHLFGMHVGDKLLF 145 (325)
T ss_pred ------CCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEc---------CCCcccHHHhcCCCCCEEEE
Confidence 78999999987652 2346789999999998889999999998 89999999999999999999
Q ss_pred EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC-----CCCccEEEEEEeC
Q psy5567 245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-----TDNTKMSLIFANQ 314 (314)
Q Consensus 245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~-----~~~~~v~Li~~~r 314 (314)
+||.|.+.+ ++ ...++++|||||||||||++|+++++.++ .+.++++|+|+||
T Consensus 146 ~GP~f~~~~--------~~---------~~~~~lvlIAGGsGITP~lsmlr~~l~~~~~~~~~~~~~v~Llyg~R 203 (325)
T PTZ00274 146 RSVTFKIQY--------RP---------NRWKHVGMIAGGTGFTPMLQIIRHSLTEPWDSGEVDRTKLSFLFCNR 203 (325)
T ss_pred eCCeeeccc--------CC---------CCCceEEEEeCCcchhHHHHHHHHHHhcccccccCCCCeEEEEEEcC
Confidence 999874332 22 23479999999999999999999998763 2356999999997
No 5
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=99.94 E-value=9.3e-26 Score=211.98 Aligned_cols=144 Identities=27% Similarity=0.446 Sum_probs=128.4
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
..+.+++|.+++.+++|++.|+|+.+++..
T Consensus 3 ~~~~~~~V~~v~~~t~di~sf~l~~~~g~~-------------------------------------------------- 32 (266)
T COG1018 3 AGFRRVTVTSVEPETDDVFSFTLEPPDGLR-------------------------------------------------- 32 (266)
T ss_pred CceEEEEEEEEEEecCceEEEEEEcCCCCc--------------------------------------------------
Confidence 468999999999999999999999887641
Q ss_pred ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEcccc
Q psy5567 171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRG 249 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G 249 (314)
+.|.||||++|.++.++..+.|.||++|+|.+++.+.|.||+. ++|.+|+||+ ++++||+|.+++|.|
T Consensus 33 --~~f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~---------~~G~~S~~Lh~~lk~Gd~l~v~~P~G 101 (266)
T COG1018 33 --LDFEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKRE---------DGGGGSNWLHDHLKVGDTLEVSAPAG 101 (266)
T ss_pred --cccCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEe---------CCCcccHHHHhcCCCCCEEEEecCCC
Confidence 1579999999999988889999999999999888999999997 7799999997 999999999999999
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ....+++|||||+|||||++|++.+...+. .+|.|+|++|
T Consensus 102 --------~F~l~~---------~~~~~~llla~G~GITP~lSml~~~~~~~~--~~v~l~h~~R 147 (266)
T COG1018 102 --------DFVLDD---------LPERKLLLLAGGIGITPFLSMLRTLLDRGP--ADVVLVHAAR 147 (266)
T ss_pred --------CccCCC---------CCCCcEEEEeccccHhHHHHHHHHHHHhCC--CCEEEEEecC
Confidence 566655 134489999999999999999999988763 6899999987
No 6
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=99.93 E-value=1.1e-25 Score=211.08 Aligned_cols=153 Identities=23% Similarity=0.391 Sum_probs=123.5
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
..+.+++|++++.+++|++.|+|++++... .
T Consensus 7 ~~~~~~~v~~~~~~~~d~~~l~l~~~~~~~-~------------------------------------------------ 37 (283)
T cd06188 7 AKKWECTVISNDNVATFIKELVLKLPSGEE-I------------------------------------------------ 37 (283)
T ss_pred cceEEEEEEEcccccchhhheEEecCCCce-e------------------------------------------------
Confidence 567789999999999999999999876421 1
Q ss_pred ccCCCCCCcEEEEEeeeC-----------------------------CceeeeeeeeecCCCCCceEEEEEEEEeecC-C
Q psy5567 171 AWLGLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNV-H 220 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~-----------------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~-~ 220 (314)
.++||||++|.++.+ +....|+||+++.+.+.+.++|+||++..+. .
T Consensus 38 ---~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~l~vk~~~~~~~~ 114 (283)
T cd06188 38 ---AFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYSLANYPAEEGELKLNVRIATPPPGN 114 (283)
T ss_pred ---eecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccCcCCCCCCCCeEEEEEEEeccCCcc
Confidence 678999999998643 2345699999999987799999999851100 0
Q ss_pred CCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567 221 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300 (314)
Q Consensus 221 ~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~ 300 (314)
+++ ++|.+|+||+++++||.|.++||+|. |.+.. ..++++|||||||||||++|+++++..
T Consensus 115 ~~~-~~G~~S~~L~~l~~Gd~v~i~gP~G~--------f~l~~----------~~~~~vlIAgGtGItP~~s~l~~~~~~ 175 (283)
T cd06188 115 SDI-PPGIGSSYIFNLKPGDKVTASGPFGE--------FFIKD----------TDREMVFIGGGAGMAPLRSHIFHLLKT 175 (283)
T ss_pred CCC-CCceehhHHhcCCCCCEEEEECcccc--------ccccC----------CCCcEEEEEecccHhHHHHHHHHHHhc
Confidence 012 47999999999999999999999994 55443 357899999999999999999998876
Q ss_pred CCCCccEEEEEEeC
Q psy5567 301 PTDNTKMSLIFANQ 314 (314)
Q Consensus 301 ~~~~~~v~Li~~~r 314 (314)
+.+..+++|+|++|
T Consensus 176 ~~~~~~v~l~~g~r 189 (283)
T cd06188 176 LKSKRKISFWYGAR 189 (283)
T ss_pred CCCCceEEEEEecC
Confidence 54357899999986
No 7
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=99.93 E-value=4.9e-25 Score=198.63 Aligned_cols=142 Identities=55% Similarity=0.987 Sum_probs=121.6
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|++++.+++++..|+|+.++..... .+
T Consensus 1 ~~v~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------------------~~ 29 (234)
T cd06183 1 FKLVSKEDISHDTRIFRFELPSPDQVL---------------------------------------------------GL 29 (234)
T ss_pred CEeEEeEecCCCEEEEEEECCCCCCcC---------------------------------------------------CC
Confidence 478999999999999999987642222 68
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccC
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 255 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~ 255 (314)
.||||++|.++.++....|+|||++.+.+.+.++|+||.+ ++|.+|+||+++++||+|.++||+|.
T Consensus 30 ~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~---------~~G~~s~~l~~~~~G~~v~i~gP~G~----- 95 (234)
T cd06183 30 PVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIY---------PGGKMSQYLHSLKPGDTVEIRGPFGK----- 95 (234)
T ss_pred CcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEEC---------CCCcchhHHhcCCCCCEEEEECCccc-----
Confidence 9999999999876677889999999988778999999987 68999999999999999999999994
Q ss_pred CcceeecccCCCCCCCCCC-CCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 256 NGEFHIRAVSKKDPPTNLK-VTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 256 ~g~f~l~~~~~~~~~~~~~-~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ .. .++++||||||||||+++++++++.+..+..+++|+|++|
T Consensus 96 ---~~~~~---------~~~~~~~vliagGtGiaP~~~~l~~~~~~~~~~~~i~l~~~~r 143 (234)
T cd06183 96 ---FEYKP---------NGKVKHIGMIAGGTGITPMLQLIRAILKDPEDKTKISLLYANR 143 (234)
T ss_pred ---eeecC---------CCCccEEEEEcCCcchhHHHHHHHHHHhCcCcCcEEEEEEecC
Confidence 55544 12 3789999999999999999999987643357899999986
No 8
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=99.93 E-value=9.3e-25 Score=201.76 Aligned_cols=142 Identities=23% Similarity=0.273 Sum_probs=120.2
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
.|.+++|+++++++++++.|+|+.+. .
T Consensus 3 ~~~~~~V~~i~~~t~~v~~l~l~~~~----~------------------------------------------------- 29 (248)
T PRK10926 3 DWVTGKVTKVQNWTDALFSLTVHAPV----D------------------------------------------------- 29 (248)
T ss_pred ccEEEEEEEEEEcCCCeEEEEEeCCC----C-------------------------------------------------
Confidence 68999999999999999999998642 1
Q ss_pred cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567 172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL 251 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~ 251 (314)
.+.||||++|.++.++....|+||+++.+.+ +.++|+||++ ++|.+|+||+++++||+|.++||.+.
T Consensus 30 --~~~pGQfv~l~~~~~g~~~~R~ySias~p~~-~~l~~~ik~~---------~~G~~S~~L~~l~~Gd~v~i~gp~~g- 96 (248)
T PRK10926 30 --PFTAGQFTKLGLEIDGERVQRAYSYVNAPDN-PDLEFYLVTV---------PEGKLSPRLAALKPGDEVQVVSEAAG- 96 (248)
T ss_pred --CCCCCCEEEEEEecCCcEEEeeecccCCCCC-CeEEEEEEEe---------CCCCcChHHHhCCCCCEEEEecCCCc-
Confidence 5789999999987667777899999998864 5899999998 78999999999999999999998742
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++.. ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus 97 ------~f~l~~~--------~~~~~~vlIagGtGItP~~s~l~~~~~~~~-~~~v~l~~g~r 144 (248)
T PRK10926 97 ------FFVLDEV--------PDCETLWMLATGTAIGPYLSILQEGKDLER-FKNLVLVHAAR 144 (248)
T ss_pred ------ceEccCC--------CCCCeEEEEEeeeeHHHHHHHHHhhHhhCC-CCcEEEEEeCC
Confidence 4555430 124789999999999999999999875443 56899999987
No 9
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=99.93 E-value=8.4e-25 Score=197.78 Aligned_cols=143 Identities=27% Similarity=0.489 Sum_probs=122.1
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
|.+++|++++.++++++.|+|+.++.. ..
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~l~~~~~~-~~-------------------------------------------------- 29 (235)
T cd06217 1 WRVLRVTEIIQETPTVKTFRLAVPDGV-PP-------------------------------------------------- 29 (235)
T ss_pred CceEEEEEEEecCCCeEEEEEECCCCC-cC--------------------------------------------------
Confidence 678999999999999999999988653 22
Q ss_pred CCCCCCcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccC
Q psy5567 173 LGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGR 250 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~ 250 (314)
.++||||++|.++. ++....|+||+++.+.+.+.++|+||.+ ++|.+|+||+ .+++||.|.++||+|.
T Consensus 30 -~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~---------~~G~~s~~l~~~l~~Gd~v~i~gP~G~ 99 (235)
T cd06217 30 -PFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRV---------PGGEVSPYLHDEVKVGDLLEVRGPIGT 99 (235)
T ss_pred -CcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEeCCcee
Confidence 67999999999873 4455679999999988878999999987 7799999996 4899999999999994
Q ss_pred ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ...++++||||||||||+++++++++.++. ..+++|+|++|
T Consensus 100 --------~~~~~---------~~~~~~vliagG~Giap~~~~~~~~~~~~~-~~~i~l~~~~r 145 (235)
T cd06217 100 --------FTWNP---------LHGDPVVLLAGGSGIVPLMSMIRYRRDLGW-PVPFRLLYSAR 145 (235)
T ss_pred --------eEeCC---------CCCceEEEEecCcCccHHHHHHHHHHhcCC-CceEEEEEecC
Confidence 55543 135789999999999999999999987753 57899999986
No 10
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=99.93 E-value=1.7e-24 Score=197.94 Aligned_cols=145 Identities=26% Similarity=0.413 Sum_probs=123.0
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
+.|+.++|+++++++++++.|+|+.++.....
T Consensus 4 ~~~~~~~v~~~~~~s~~~~~l~l~~~~~~~~~------------------------------------------------ 35 (247)
T cd06184 4 RGFRPFVVARKVAESEDITSFYLEPADGGPLP------------------------------------------------ 35 (247)
T ss_pred CCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCC------------------------------------------------
Confidence 56899999999999999999999987543212
Q ss_pred ccCCCCCCcEEEEEeeeCC--ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEcc
Q psy5567 171 AWLGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGP 247 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~~--~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP 247 (314)
.+.||||+.|.++.++ ....|+|||++.+.+ +.++|.||.+ ++|.+|+||++ +++||+|.++||
T Consensus 36 ---~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd~v~i~gP 102 (247)
T cd06184 36 ---PFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG-DYYRISVKRE---------PGGLVSNYLHDNVKVGDVLEVSAP 102 (247)
T ss_pred ---CCCCCCEEEEEEecCCCCCceeEEeEeccCCCC-CeEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEEcC
Confidence 6899999999987654 467899999998865 4899999987 78999999977 999999999999
Q ss_pred ccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 248 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 248 ~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+|. |.++. ...++++|||||||||||+++++++..+.. ..+++|+|++|
T Consensus 103 ~G~--------~~~~~---------~~~~~llliagGtGiaP~~~~l~~~~~~~~-~~~i~l~~~~r 151 (247)
T cd06184 103 AGD--------FVLDE---------ASDRPLVLISAGVGITPMLSMLEALAAEGP-GRPVTFIHAAR 151 (247)
T ss_pred CCc--------eECCC---------CCCCcEEEEeccccHhHHHHHHHHHHhcCC-CCcEEEEEEcC
Confidence 994 65543 135789999999999999999999987632 57899999986
No 11
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=99.93 E-value=1.4e-24 Score=198.00 Aligned_cols=144 Identities=22% Similarity=0.416 Sum_probs=122.5
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
|.+...++|++++.++++++.|+|++++... .
T Consensus 3 ~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~-~----------------------------------------------- 34 (238)
T cd06211 3 NVKDFEGTVVEIEDLTPTIKGVRLKLDEPEE-I----------------------------------------------- 34 (238)
T ss_pred CceEEeEEEEEEEecCCCEEEEEEEcCCCCc-C-----------------------------------------------
Confidence 4567789999999999999999999876431 1
Q ss_pred cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567 170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR 248 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~ 248 (314)
.+.||||+.|+++ +....|+||+++.+.+.+.++|+||++ ++|.+|++|+ .+++||+|.++||.
T Consensus 35 ----~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~l~l~i~~~---------~~G~~s~~l~~~l~~G~~v~i~gP~ 99 (238)
T cd06211 35 ----EFQAGQYVNLQAP--GYEGTRAFSIASSPSDAGEIELHIRLV---------PGGIATTYVHKQLKEGDELEISGPY 99 (238)
T ss_pred ----ccCCCCeEEEEcC--CCCCccccccCCCCCCCCEEEEEEEEC---------CCCcchhhHhhcCCCCCEEEEECCc
Confidence 6799999999985 334679999999988779999999987 7899999995 79999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|. |.+.+ ...++++||||||||||+++++++++.++. ..+++|+|++|
T Consensus 100 G~--------~~~~~---------~~~~~~v~iagG~GiaP~~~~l~~~~~~~~-~~~v~l~~~~r 147 (238)
T cd06211 100 GD--------FFVRD---------SDQRPIIFIAGGSGLSSPRSMILDLLERGD-TRKITLFFGAR 147 (238)
T ss_pred cc--------eEecC---------CCCCCEEEEeCCcCHHHHHHHHHHHHhcCC-CCcEEEEEecC
Confidence 94 55543 134789999999999999999999987754 46899999986
No 12
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=99.93 E-value=1.5e-24 Score=196.18 Aligned_cols=138 Identities=24% Similarity=0.467 Sum_probs=118.4
Q ss_pred EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567 94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL 173 (314)
Q Consensus 94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (314)
.+++|++++.++++++.|+|++++... .
T Consensus 2 ~~~~V~~~~~~t~~~~~l~l~~~~~~~-~--------------------------------------------------- 29 (228)
T cd06209 2 FEATVTEVERLSDSTIGLTLELDEAGA-L--------------------------------------------------- 29 (228)
T ss_pred eeEEEEEEEEcCCCeEEEEEEcCCCCc-C---------------------------------------------------
Confidence 368999999999999999999876421 1
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCcc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLA 252 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~ 252 (314)
.+.||||++|+++ +....|+||+++.+.+ +.++|+||.+ ++|.+|+||++ +++||.|.++||+|.
T Consensus 30 ~~~pGQ~v~l~~~--~~~~~r~ysi~s~~~~-~~i~~~i~~~---------~~G~~s~~l~~~l~~G~~v~v~gP~G~-- 95 (228)
T cd06209 30 AFLPGQYVNLQVP--GTDETRSYSFSSAPGD-PRLEFLIRLL---------PGGAMSSYLRDRAQPGDRLTLTGPLGS-- 95 (228)
T ss_pred ccCCCCEEEEEeC--CCCcccccccccCCCC-CeEEEEEEEc---------CCCcchhhHHhccCCCCEEEEECCccc--
Confidence 6899999999985 4446899999998876 8999999998 78999999977 999999999999994
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ..++++||||||||||++++++++...+ +..+++|+|++|
T Consensus 96 ------~~~~~----------~~~~~vlia~GtGIaP~~~ll~~~~~~~-~~~~v~l~~~~r 140 (228)
T cd06209 96 ------FYLRE----------VKRPLLMLAGGTGLAPFLSMLDVLAEDG-SAHPVHLVYGVT 140 (228)
T ss_pred ------ceecC----------CCCeEEEEEcccCHhHHHHHHHHHHhcC-CCCcEEEEEecC
Confidence 54433 2478999999999999999999998765 357899999986
No 13
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=99.93 E-value=1.5e-24 Score=195.65 Aligned_cols=140 Identities=31% Similarity=0.555 Sum_probs=120.9
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|+++++++++++.|+|+.+... .. .+
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~~~~-~~---------------------------------------------------~~ 28 (231)
T cd06215 1 LRCVKIIQETPDVKTFRFAAPDGS-LF---------------------------------------------------AY 28 (231)
T ss_pred CeEEEEEEcCCCeEEEEEECCCCC-cC---------------------------------------------------Cc
Confidence 479999999999999999988653 12 67
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcccc
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYL 254 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~ 254 (314)
.||||+.|+++.++....|+||+++.+.+.+.++|.||++ ++|.+|+||+ ++++||.+.++||+|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~~~~G~~v~i~gP~G----- 94 (231)
T cd06215 29 KPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRV---------PGGLVSNWLHDNLKVGDELWASGPAG----- 94 (231)
T ss_pred CCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEEcCcc-----
Confidence 9999999999766777789999999988878899999988 7899999995 799999999999999
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+.. ...++++||||||||||+++|++++.+.+. ..+++|+|++|
T Consensus 95 ---~f~~~~---------~~~~~~vlIagG~Giap~~~~l~~~~~~~~-~~~v~l~~~~r 141 (231)
T cd06215 95 ---EFTLID---------HPADKLLLLSAGSGITPMMSMARWLLDTRP-DADIVFIHSAR 141 (231)
T ss_pred ---eeEeCC---------CCCCcEEEEecCcCcchHHHHHHHHHhcCC-CCcEEEEEecC
Confidence 465543 135799999999999999999999987653 57899999986
No 14
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=99.93 E-value=1.1e-24 Score=205.84 Aligned_cols=147 Identities=18% Similarity=0.382 Sum_probs=120.6
Q ss_pred CCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCc
Q psy5567 89 DPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPF 168 (314)
Q Consensus 89 ~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (314)
||+.+++++|++++++|+|+..|+|++..+.... .
T Consensus 1 ~~~~~~~~~V~~~~~~t~d~~~~~l~~~~~~~~~--------------------------------------------~- 35 (289)
T PRK08345 1 NPYALHDAKILEVYDLTEREKLFLLRFEDPELAE--------------------------------------------S- 35 (289)
T ss_pred CCcCceeEEEEEEEecCCCCCEEEEEEeCccccC--------------------------------------------C-
Confidence 6888999999999999999888888875432100 0
Q ss_pred ccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccc
Q psy5567 169 HFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPR 248 (314)
Q Consensus 169 ~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~ 248 (314)
..++||||+.|+++..+ .|+||+++.+.+.+.++|+||.. |.+|++|+++++||+|.++||+
T Consensus 36 ----~~~~pGQ~v~l~~~~~~---~~pySias~p~~~~~l~l~Ik~~-----------G~~S~~L~~l~~Gd~v~v~gP~ 97 (289)
T PRK08345 36 ----FTFKPGQFVQVTIPGVG---EVPISICSSPTRKGFFELCIRRA-----------GRVTTVIHRLKEGDIVGVRGPY 97 (289)
T ss_pred ----CCcCCCCEEEEEcCCCC---ceeeEecCCCCCCCEEEEEEEeC-----------ChHHHHHHhCCCCCEEEEeCCC
Confidence 16899999999986432 38999999988779999999963 9999999999999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|. .|.++. ...++++|||||||||||++|+++++++..+.++++|+|++|
T Consensus 98 G~-------~f~~~~---------~~~~~~llIAgGtGIaP~~s~l~~~l~~~~~~~~v~l~~~~r 147 (289)
T PRK08345 98 GN-------GFPVDE---------MEGMDLLLIAGGLGMAPLRSVLLYAMDNRWKYGNITLIYGAK 147 (289)
T ss_pred CC-------CCCccc---------ccCceEEEEecccchhHHHHHHHHHHhcCCCCCcEEEEEecC
Confidence 95 244432 134689999999999999999999887653357999999987
No 15
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=99.92 E-value=1.2e-24 Score=208.61 Aligned_cols=143 Identities=21% Similarity=0.323 Sum_probs=120.6
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
+.....++|+++++++++++.|+|+.++. .
T Consensus 6 ~~~~~~~~V~~i~~~t~~v~~l~l~~~~~---~----------------------------------------------- 35 (332)
T PRK10684 6 PQCPNRMQVHSIVQETPDVWTISLICHDF---Y----------------------------------------------- 35 (332)
T ss_pred CCCceeEEEEEEEccCCCeEEEEEcCCCC---C-----------------------------------------------
Confidence 34456899999999999999999985432 1
Q ss_pred cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567 170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR 248 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~ 248 (314)
.|.||||++|+++. +....|+||+++.+.+.+.++|+||++ ++|.+|+||+ ++++||+|.++||.
T Consensus 36 ----~f~pGQfv~l~~~~-~~~~~R~ySias~p~~~~~l~i~Vk~~---------~~G~~S~~L~~~l~~Gd~v~v~gP~ 101 (332)
T PRK10684 36 ----PYRAGQYALVSIRN-SAETLRAYTLSSTPGVSEFITLTVRRI---------DDGVGSQWLTRDVKRGDYLWLSDAM 101 (332)
T ss_pred ----CcCCCCEEEEEecC-CCEeeeeecccCCCCCCCcEEEEEEEc---------CCCcchhHHHhcCCCCCEEEEeCCc
Confidence 67999999999863 345679999999998778999999998 7899999995 89999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|+ |.++. ...++++|||||||||||++|+++++.+.. ..+++|+|++|
T Consensus 102 G~--------f~l~~---------~~~~~~vliAgG~GItP~~sml~~~~~~~~-~~~v~l~y~~r 149 (332)
T PRK10684 102 GE--------FTCDD---------KAEDKYLLLAAGCGVTPIMSMRRWLLKNRP-QADVQVIFNVR 149 (332)
T ss_pred cc--------cccCC---------CCCCcEEEEecCcCcchHHHHHHHHHhcCC-CCCEEEEEeCC
Confidence 95 55543 135789999999999999999999887643 47899999987
No 16
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=99.92 E-value=2.1e-24 Score=195.57 Aligned_cols=139 Identities=25% Similarity=0.502 Sum_probs=119.1
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|+++++++++++.|+|++++... ..+
T Consensus 1 l~v~~i~~~t~~~~~~~l~~~~~~~----------------------------------------------------~~~ 28 (231)
T cd06191 1 LRVAEVRSETPDAVTIVFAVPGPLQ----------------------------------------------------YGF 28 (231)
T ss_pred CEEEEEEecCCCcEEEEEeCCCCCC----------------------------------------------------CCC
Confidence 4789999999999999999765421 167
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcccc
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYL 254 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~ 254 (314)
.||||++|.++.++....|+||+++.+. .++++|.||.+ ++|.+|+||+ ++++||.|.++||+|
T Consensus 29 ~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~---------~~G~~s~~l~~~~~~Gd~v~i~gP~G----- 93 (231)
T cd06191 29 RPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRV---------PGGRVSNYLREHIQPGMTVEVMGPQG----- 93 (231)
T ss_pred CCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEEC---------CCCccchHHHhcCCCCCEEEEeCCcc-----
Confidence 9999999998766777889999999887 68999999987 7899999997 799999999999999
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+++ ...++++||||||||||+++|++++..... ..+++|+|++|
T Consensus 94 ---~f~l~~---------~~~~~~lliagG~Gitp~~s~~~~~~~~~~-~~~v~l~~~~r 140 (231)
T cd06191 94 ---HFVYQP---------QPPGRYLLVAAGSGITPLMAMIRATLQTAP-ESDFTLIHSAR 140 (231)
T ss_pred ---ceEeCC---------CCCCcEEEEecCccHhHHHHHHHHHHhcCC-CCCEEEEEecC
Confidence 466554 235789999999999999999999987643 57899999986
No 17
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=99.92 E-value=1.8e-24 Score=196.24 Aligned_cols=144 Identities=22% Similarity=0.415 Sum_probs=120.0
Q ss_pred EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567 94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL 173 (314)
Q Consensus 94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (314)
.+++|+++++++++++.|+|+.++..... .+.
T Consensus 2 ~~~~v~~~~~~~~~~~~l~l~~~~~~~~~------------------------------------------------~~~ 33 (236)
T cd06210 2 REAEIVAVDRVSSNVVRLRLQPDDAEGAG------------------------------------------------IAA 33 (236)
T ss_pred ceEEEEEEeecCCceEEEEEEeCCccccc------------------------------------------------ccC
Confidence 46899999999999999999987651000 001
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCcc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLA 252 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~ 252 (314)
.+.||||+.|.++ +....|+||+++.+.+.+.++|+||.+ ++|.+|+||++ +++||.|.++||.|
T Consensus 34 ~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~~~~~l~~~i~~~---------~~G~~s~~l~~~~~~Gd~v~i~gP~G--- 99 (236)
T cd06210 34 EFVPGQFVEIEIP--GTDTRRSYSLANTPNWDGRLEFLIRLL---------PGGAFSTYLETRAKVGQRLNLRGPLG--- 99 (236)
T ss_pred CcCCCCEEEEEcC--CCccceecccCCCCCCCCEEEEEEEEc---------CCCccchhhhhCcCCCCEEEEecCcc---
Confidence 6899999999985 444689999999988778999999987 78999999976 99999999999999
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+++ ...++++||||||||||+++|++++...+. ..+++|+|++|
T Consensus 100 -----~f~l~~---------~~~~~~vliagGtGiaP~~~~l~~~~~~~~-~~~v~l~~~~r 146 (236)
T cd06210 100 -----AFGLRE---------NGLRPRWFVAGGTGLAPLLSMLRRMAEWGE-PQEARLFFGVN 146 (236)
T ss_pred -----eeeecC---------CCCccEEEEccCcchhHHHHHHHHHHhcCC-CceEEEEEecC
Confidence 466554 235789999999999999999999987653 46899999986
No 18
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=99.92 E-value=1.8e-24 Score=208.60 Aligned_cols=144 Identities=19% Similarity=0.339 Sum_probs=123.1
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
+.++.+++|++++.+++|++.|+|+++......
T Consensus 103 ~~~~~~~~V~~i~~~s~di~~l~l~~~~~~~~~----------------------------------------------- 135 (340)
T PRK11872 103 DTLKISGVVTAVELVSETTAILHLDASAHGRQL----------------------------------------------- 135 (340)
T ss_pred ccceeeEEEEEEEecCCCeEEEEEEcCCCCCcc-----------------------------------------------
Confidence 456788999999999999999999987542212
Q ss_pred cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567 170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR 248 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~ 248 (314)
.+.||||++|.++ +....|+||+++.+.+.+.++|+||++ ++|.+|+||+ ++++||.|.++||+
T Consensus 136 ----~~~pGQ~v~l~~~--~~~~~R~ySias~p~~~~~l~~~ik~~---------~~G~~s~~L~~~l~~G~~v~i~gP~ 200 (340)
T PRK11872 136 ----DFLPGQYARLQIP--GTDDWRSYSFANRPNATNQLQFLIRLL---------PDGVMSNYLRERCQVGDEILFEAPL 200 (340)
T ss_pred ----CcCCCCEEEEEeC--CCCceeecccCCCCCCCCeEEEEEEEC---------CCCcchhhHhhCCCCCCEEEEEcCc
Confidence 7899999999985 445689999999988789999999998 7899999995 69999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|+ |.++. ..++++|||||||||||++|+++++..+. .++++|+|++|
T Consensus 201 G~--------f~l~~----------~~~~~vliagGtGiaP~~s~l~~~~~~~~-~~~v~l~~g~r 247 (340)
T PRK11872 201 GA--------FYLRE----------VERPLVFVAGGTGLSAFLGMLDELAEQGC-SPPVHLYYGVR 247 (340)
T ss_pred ce--------eEeCC----------CCCcEEEEeCCcCccHHHHHHHHHHHcCC-CCcEEEEEecC
Confidence 94 66544 34789999999999999999999987653 46899999987
No 19
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=99.92 E-value=3.8e-24 Score=195.45 Aligned_cols=144 Identities=22% Similarity=0.371 Sum_probs=124.6
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
.....++|++++.+++++++|+|+.++. ..
T Consensus 15 ~~~~~~~v~~i~~~~~~~~~i~l~~~~~--~~------------------------------------------------ 44 (243)
T cd06216 15 ARELRARVVAVRPETADMVTLTLRPNRG--WP------------------------------------------------ 44 (243)
T ss_pred cceeEEEEEEEEEcCCCcEEEEEecCCC--CC------------------------------------------------
Confidence 5677999999999999999999996643 11
Q ss_pred ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567 171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR 248 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~ 248 (314)
.+.||||+.|.++.++....|+||+++.+. +.+.++|.||.+ ++|.+|.||+ .+++||.|.++||+
T Consensus 45 ---~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~---------~~G~~s~~l~~~~~~Gd~v~i~gP~ 112 (243)
T cd06216 45 ---GHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQ---------PDGLVSNWLVNHLAPGDVVELSQPQ 112 (243)
T ss_pred ---CcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEc---------CCCcchhHHHhcCCCCCEEEEECCc
Confidence 689999999999877777889999999887 678999999987 7899999997 59999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
| .|.++. ...++++||||||||||++++++++...+ +..++.|+|++|
T Consensus 113 G--------~f~l~~---------~~~~~~v~iagG~Giap~~s~l~~~~~~~-~~~~i~l~~~~r 160 (243)
T cd06216 113 G--------DFVLPD---------PLPPRLLLIAAGSGITPVMSMLRTLLARG-PTADVVLLYYAR 160 (243)
T ss_pred e--------eeecCC---------CCCCCEEEEecCccHhHHHHHHHHHHhcC-CCCCEEEEEEcC
Confidence 9 466654 23689999999999999999999998775 357899999986
No 20
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=99.92 E-value=2e-24 Score=210.93 Aligned_cols=145 Identities=24% Similarity=0.407 Sum_probs=122.2
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
..|.+++|++++.++++++.|+|++++.....
T Consensus 152 ~~~~~~~V~~~~~~t~~~~~~~l~~~~~~~~~------------------------------------------------ 183 (399)
T PRK13289 152 RGWRDFRVVKKVPESEVITSFYLEPVDGGPVA------------------------------------------------ 183 (399)
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEcCCCCcCC------------------------------------------------
Confidence 57889999999999999999999977543222
Q ss_pred ccCCCCCCcEEEEEeeeCCcee--eeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEcc
Q psy5567 171 AWLGLPIGQHLSLSATINDEFV--ARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGP 247 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~~~~~--~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP 247 (314)
.+.||||+.|.++.++... .|+||+++.+. .+.++|+||++ ++|.+|+||++ +++||.|.++||
T Consensus 184 ---~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~-~~~l~~~Vk~~---------~~G~~S~~L~~~l~~Gd~v~v~gP 250 (399)
T PRK13289 184 ---DFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN-GKYYRISVKRE---------AGGKVSNYLHDHVNVGDVLELAAP 250 (399)
T ss_pred ---CCCCCCeEEEEEecCCccccceeEEEeeeCCC-CCeEEEEEEEC---------CCCeehHHHhhcCCCCCEEEEEcC
Confidence 6899999999987655444 49999998876 47899999987 78999999965 999999999999
Q ss_pred ccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 248 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 248 ~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+|+ |.++. ...++++||||||||||+++|+++++.... ..+++|+|++|
T Consensus 251 ~G~--------f~l~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~-~~~v~l~~~~r 299 (399)
T PRK13289 251 AGD--------FFLDV---------ASDTPVVLISGGVGITPMLSMLETLAAQQP-KRPVHFIHAAR 299 (399)
T ss_pred ccc--------cccCC---------CCCCcEEEEecCccHHHHHHHHHHHHhcCC-CCCEEEEEEeC
Confidence 995 55543 135789999999999999999999987643 57999999987
No 21
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.92 E-value=3.8e-24 Score=193.60 Aligned_cols=136 Identities=24% Similarity=0.446 Sum_probs=116.9
Q ss_pred EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567 95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG 174 (314)
Q Consensus 95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (314)
+++|++++.++++++.|+|+.+.. . .
T Consensus 2 ~~~v~~~~~~t~~~~~~~l~~~~~---~---------------------------------------------------~ 27 (227)
T cd06213 2 RGTIVAQERLTHDIVRLTVQLDRP---I---------------------------------------------------A 27 (227)
T ss_pred eEEEEEEeecCCCEEEEEEecCCC---C---------------------------------------------------C
Confidence 578999999999999999987532 1 6
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEccccCccc
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAY 253 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G~~~y 253 (314)
+.||||+.|.++ +....|+||+++.+.+.+.++|+||.+ ++|.+|++| ..+++||.|.++||+|
T Consensus 28 ~~pGQ~~~l~~~--~~~~~r~ysi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G---- 92 (227)
T cd06213 28 YKAGQYAELTLP--GLPAARSYSFANAPQGDGQLSFHIRKV---------PGGAFSGWLFGADRTGERLTVRGPFG---- 92 (227)
T ss_pred cCCCCEEEEEeC--CCCcccccccCCCCCCCCEEEEEEEEC---------CCCcchHHHHhcCCCCCEEEEeCCCc----
Confidence 789999999985 333789999999988778999999987 789999999 6699999999999999
Q ss_pred cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+.+ ..++++||||||||||+++|++++..++. .++++|+|++|
T Consensus 93 ----~~~~~~----------~~~~~lliagG~GiaP~~~~~~~~~~~~~-~~~i~l~~~~r 138 (227)
T cd06213 93 ----DFWLRP----------GDAPILCIAGGSGLAPILAILEQARAAGT-KRDVTLLFGAR 138 (227)
T ss_pred ----ceEeCC----------CCCcEEEEecccchhHHHHHHHHHHhcCC-CCcEEEEEeeC
Confidence 465543 24789999999999999999999987653 57899999986
No 22
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=99.92 E-value=2.5e-24 Score=196.49 Aligned_cols=137 Identities=22% Similarity=0.347 Sum_probs=117.1
Q ss_pred EEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCC
Q psy5567 97 KLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLP 176 (314)
Q Consensus 97 ~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (314)
+|++++.+++++++|+|+.+.. . .++
T Consensus 1 ~v~~~~~~t~~~~~~~l~~~~~---~---------------------------------------------------~~~ 26 (241)
T cd06195 1 TVLKRRDWTDDLFSFRVTRDIP---F---------------------------------------------------RFQ 26 (241)
T ss_pred CeEEEEEcCCCEEEEEEcCCCC---C---------------------------------------------------ccC
Confidence 4789999999999999986641 2 689
Q ss_pred CCcEEEEEeeeC-CceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-ccccCcccc
Q psy5567 177 IGQHLSLSATIN-DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGRLAYL 254 (314)
Q Consensus 177 ~GQ~v~l~~~~~-~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~~~y~ 254 (314)
||||+.|+++.+ +....|+||+++.+.+ +.++|+||++ ++|.+|+||+++++||.|.++ ||.|
T Consensus 27 pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G----- 91 (241)
T cd06195 27 AGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILV---------PDGPLTPRLFKLKPGDTIYVGKKPTG----- 91 (241)
T ss_pred CCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEe---------cCCCCchHHhcCCCCCEEEECcCCCC-----
Confidence 999999998765 6678899999998866 8999999998 789999999999999999999 9999
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+++. ...++++|||||||||||+++++++.... +..+++|+|++|
T Consensus 92 ---~f~~~~~--------~~~~~~vlIagGtGiaP~~~~l~~~~~~~-~~~~v~l~~~~r 139 (241)
T cd06195 92 ---FLTLDEV--------PPGKRLWLLATGTGIAPFLSMLRDLEIWE-RFDKIVLVHGVR 139 (241)
T ss_pred ---ceeecCC--------CCCceEEEEeeccchhhHHHHHHHHHhhC-CCCcEEEEEccC
Confidence 4666540 13579999999999999999999998543 257899999986
No 23
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=99.92 E-value=4.5e-24 Score=205.69 Aligned_cols=146 Identities=24% Similarity=0.446 Sum_probs=121.8
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
|++++|++++.++++++.|+|+.|+.....
T Consensus 1 ~~~~~V~~i~~~t~~~~~l~l~~~~~~~~~-------------------------------------------------- 30 (352)
T TIGR02160 1 FHRLTVAEVERLTADAVAISFEIPDELAED-------------------------------------------------- 30 (352)
T ss_pred CeEeEEEEEEecCCCeEEEEEeCCcccccc--------------------------------------------------
Confidence 468999999999999999999987542111
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCc
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRL 251 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~ 251 (314)
..+.||||++|.++.++....|+||+++.++ .+.++|+||++ ++|.+|+||+ ++++||.|.++||+|.
T Consensus 31 ~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~-~~~l~i~vk~~---------~~G~~S~~l~~~l~~Gd~v~v~gP~G~- 99 (352)
T TIGR02160 31 YRFAPGQHLTLRREVDGEELRRSYSICSAPA-PGEIRVAVKKI---------PGGLFSTWANDEIRPGDTLEVMAPQGL- 99 (352)
T ss_pred CCCCCCCeEEEEEecCCcEeeeeccccCCCC-CCcEEEEEEEe---------CCCcchHHHHhcCCCCCEEEEeCCcee-
Confidence 1689999999999766777789999998875 47999999998 7899999995 8999999999999994
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.++. .....++++|||||||||||++|+++++.++. ..+++|+|++|
T Consensus 100 -------f~~~~-------~~~~~~~~lliagG~GItP~~s~l~~~~~~~~-~~~v~l~~~~r 147 (352)
T TIGR02160 100 -------FTPDL-------STPHAGHYVAVAAGSGITPMLSIAETVLAAEP-RSTFTLVYGNR 147 (352)
T ss_pred -------eecCC-------CccccccEEEEeccccHhHHHHHHHHHHhcCC-CceEEEEEEeC
Confidence 55543 01124789999999999999999999987643 57899999987
No 24
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=99.92 E-value=4e-24 Score=205.08 Aligned_cols=143 Identities=21% Similarity=0.413 Sum_probs=122.4
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
|.+..+++|+++++++++++.|+|++|+.. ..
T Consensus 99 ~~~~~~~~V~~~~~~~~d~~~l~l~~~~~~-~~----------------------------------------------- 130 (339)
T PRK07609 99 PVKKLPCRVASLERVAGDVMRLKLRLPATE-RL----------------------------------------------- 130 (339)
T ss_pred cceEEEEEEEEEEcCCCcEEEEEEEcCCCC-CC-----------------------------------------------
Confidence 457889999999999999999999987542 11
Q ss_pred cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567 170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR 248 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~ 248 (314)
.+.||||+.|.++. + ..|+||++|.+.+.+.++|+||.+ ++|.+|+||+ .+++||.|.++||+
T Consensus 131 ----~~~pGQfv~l~~~~-~--~~R~ySias~p~~~~~l~~~ik~~---------~~G~~s~~l~~~l~~G~~v~v~gP~ 194 (339)
T PRK07609 131 ----QYLAGQYIEFILKD-G--KRRSYSIANAPHSGGPLELHIRHM---------PGGVFTDHVFGALKERDILRIEGPL 194 (339)
T ss_pred ----ccCCCCeEEEECCC-C--ceeeeecCCCCCCCCEEEEEEEec---------CCCccHHHHHHhccCCCEEEEEcCc
Confidence 68999999999852 2 479999999988779999999988 7899999995 79999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
| .|.+++ ...++++|||||||||||++|+++++..+. .++++|+|++|
T Consensus 195 G--------~~~~~~---------~~~~~ivlIagGtGiaP~~s~l~~~~~~~~-~~~i~l~~g~r 242 (339)
T PRK07609 195 G--------TFFLRE---------DSDKPIVLLASGTGFAPIKSIVEHLRAKGI-QRPVTLYWGAR 242 (339)
T ss_pred e--------eEEecC---------CCCCCEEEEecCcChhHHHHHHHHHHhcCC-CCcEEEEEecC
Confidence 9 466543 245789999999999999999999987653 56899999986
No 25
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=99.92 E-value=4e-24 Score=193.83 Aligned_cols=139 Identities=24% Similarity=0.530 Sum_probs=118.7
Q ss_pred EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567 95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG 174 (314)
Q Consensus 95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (314)
+++|++++.++++++.|+|+++... .. .
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~~-~~---------------------------------------------------~ 29 (232)
T cd06212 2 VGTVVAVEALTHDIRRLRLRLEEPE-PI---------------------------------------------------K 29 (232)
T ss_pred ceEEEEEeecCCCeEEEEEEcCCCC-cC---------------------------------------------------C
Confidence 5789999999999999999976642 11 6
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccc
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAY 253 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y 253 (314)
+.||||+.|.++. ....|+||+++.+.+.+.++|+||.+ ++|.+|++|++ +++||+|.++||+|.
T Consensus 30 ~~pGQ~v~l~~~~--~~~~r~ySi~s~~~~~~~l~l~vk~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G~--- 95 (232)
T cd06212 30 FFAGQYVDITVPG--TEETRSFSMANTPADPGRLEFIIKKY---------PGGLFSSFLDDGLAVGDPVTVTGPYGT--- 95 (232)
T ss_pred cCCCCeEEEEcCC--CCcccccccCCCCCCCCEEEEEEEEC---------CCCchhhHHhhcCCCCCEEEEEcCccc---
Confidence 7999999999853 33789999999988779999999997 78999999975 999999999999994
Q ss_pred cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.. ...++++|||||||||||+++++++...+. ..+++|+|++|
T Consensus 96 -----~~~~~---------~~~~~~l~iagG~Giap~~~~l~~~~~~~~-~~~v~l~~~~r 141 (232)
T cd06212 96 -----CTLRE---------SRDRPIVLIGGGSGMAPLLSLLRDMAASGS-DRPVRFFYGAR 141 (232)
T ss_pred -----ceecC---------CCCCcEEEEecCcchhHHHHHHHHHHhcCC-CCcEEEEEecc
Confidence 54443 136799999999999999999999988753 46899999986
No 26
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=99.92 E-value=6.1e-24 Score=191.93 Aligned_cols=135 Identities=24% Similarity=0.447 Sum_probs=115.8
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|+++++++++++.|+|+.++. . .+
T Consensus 1 ~~v~~~~~~t~~~~~l~l~~~~~---~---------------------------------------------------~~ 26 (224)
T cd06189 1 CKVESIEPLNDDVYRVRLKPPAP---L---------------------------------------------------DF 26 (224)
T ss_pred CEEEEEEeCCCceEEEEEecCCC---c---------------------------------------------------cc
Confidence 47899999999999999997752 2 67
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcccc
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYL 254 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~ 254 (314)
.||||+.|.++.. ..|+||+++.+.+.+.++|+||.+ ++|.+|++|. .+++||.|.++||+|.
T Consensus 27 ~pGQ~v~l~~~~~---~~r~ySi~s~~~~~~~l~~~vk~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G~---- 90 (224)
T cd06189 27 LAGQYLDLLLDDG---DKRPFSIASAPHEDGEIELHIRAV---------PGGSFSDYVFEELKENGLVRIEGPLGD---- 90 (224)
T ss_pred CCCCEEEEEcCCC---CceeeecccCCCCCCeEEEEEEec---------CCCccHHHHHHhccCCCEEEEecCCcc----
Confidence 9999999998532 379999999988779999999998 7899999995 5999999999999994
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ...++++|||||||||||++++++++.++. ..+++|+|++|
T Consensus 91 ----~~~~~---------~~~~~ivliagG~GiaP~~~~l~~l~~~~~-~~~v~l~~~~r 136 (224)
T cd06189 91 ----FFLRE---------DSDRPLILIAGGTGFAPIKSILEHLLAQGS-KRPIHLYWGAR 136 (224)
T ss_pred ----EEecc---------CCCCCEEEEecCcCHHHHHHHHHHHHhcCC-CCCEEEEEecC
Confidence 55544 136789999999999999999999987653 57899999986
No 27
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.92 E-value=5.2e-24 Score=191.11 Aligned_cols=135 Identities=25% Similarity=0.450 Sum_probs=114.5
Q ss_pred EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567 95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG 174 (314)
Q Consensus 95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (314)
.++|++++.++++++.|+|+.++. . .
T Consensus 2 ~~~v~~~~~~~~~~~~~~l~~~~~---~---------------------------------------------------~ 27 (218)
T cd06196 2 TVTLLSIEPVTHDVKRLRFDKPEG---Y---------------------------------------------------D 27 (218)
T ss_pred ceEEEEEEEcCCCeEEEEEcCCCc---C---------------------------------------------------C
Confidence 578999999999999999997653 2 6
Q ss_pred CCCCcEEEEEeeeCC-ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567 175 LPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY 253 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~-~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y 253 (314)
+.||||+.|.++.++ ....|+||+++.+.+ +.++|+||++ +.+|.+|++|+++++||.|.++||+|+
T Consensus 28 ~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~--------~~~g~~s~~l~~l~~G~~v~i~gP~G~--- 95 (218)
T cd06196 28 FTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSY--------PDHDGVTEQLGRLQPGDTLLIEDPWGA--- 95 (218)
T ss_pred CCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEc--------CCCCcHhHHHHhCCCCCEEEEECCccc---
Confidence 799999999987544 346899999998865 8999999987 234889999999999999999999995
Q ss_pred cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.. .++++|||||||||||++++++++..+. ..+++|+|++|
T Consensus 96 -----~~~-------------~~~~vlia~GtGiaP~~s~l~~~~~~~~-~~~v~l~~~~r 137 (218)
T cd06196 96 -----IEY-------------KGPGVFIAGGAGITPFIAILRDLAAKGK-LEGNTLIFANK 137 (218)
T ss_pred -----eEe-------------cCceEEEecCCCcChHHHHHHHHHhCCC-CceEEEEEecC
Confidence 332 1468999999999999999999987653 56899999986
No 28
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=99.92 E-value=1.1e-23 Score=191.53 Aligned_cols=145 Identities=26% Similarity=0.492 Sum_probs=121.4
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
++.++|+++++++++++.|+|+++.+.... +
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------~---- 31 (241)
T cd06214 1 FHPLTVAEVVRETADAVSITFDVPEELRDA---------------------------------------------F---- 31 (241)
T ss_pred CceEEEEEEEecCCCeEEEEEecCcccCCC---------------------------------------------C----
Confidence 357899999999999999999987653210 0
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCc
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRL 251 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~ 251 (314)
.+.||||+.|.++.++....|+||+++.+++. +++|+||++ ++|.+|.||. ++++|+.+.++||.|.
T Consensus 32 -~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~-~l~~~i~~~---------~~G~~s~~l~~~~~~G~~v~i~gP~G~- 99 (241)
T cd06214 32 -RYRPGQFLTLRVPIDGEEVRRSYSICSSPGDD-ELRITVKRV---------PGGRFSNWANDELKAGDTLEVMPPAGR- 99 (241)
T ss_pred -CcCCCCeEEEEeecCCCeeeeeeeecCCCCCC-cEEEEEEEc---------CCCccchhHHhccCCCCEEEEeCCccc-
Confidence 67999999999986666788999999987654 899999998 7899999995 8999999999999995
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ....++++|||||||||||+++++++..... .++++|+|++|
T Consensus 100 -------~~~~~--------~~~~~~~llia~GtGiap~~~~~~~~~~~~~-~~~v~l~~~~r 146 (241)
T cd06214 100 -------FTLPP--------LPGARHYVLFAAGSGITPVLSILKTALAREP-ASRVTLVYGNR 146 (241)
T ss_pred -------cccCC--------CCCCCcEEEEecccChhhHHHHHHHHHhcCC-CCcEEEEEEeC
Confidence 44433 0136899999999999999999999987753 57899999986
No 29
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=99.91 E-value=7.5e-24 Score=188.68 Aligned_cols=114 Identities=31% Similarity=0.591 Sum_probs=99.7
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY 253 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y 253 (314)
.+.||||+.|.++.++....|+||+++.+.+.+.++|+||.+ ++|.+|+||+++++||.|.++||.|+
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~---------~~G~~s~~l~~~~~G~~v~i~gP~G~--- 89 (223)
T cd00322 22 SFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIV---------PGGPFSAWLHDLKPGDEVEVSGPGGD--- 89 (223)
T ss_pred CcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEe---------CCCchhhHHhcCCCCCEEEEECCCcc---
Confidence 678999999999766667889999999988779999999998 68999999999999999999999995
Q ss_pred cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.. ...++++||||||||||+++|++++.... +..+++|+|++|
T Consensus 90 -----~~~~~---------~~~~~~v~ia~G~Giap~~~~l~~~~~~~-~~~~v~l~~~~r 135 (223)
T cd00322 90 -----FFLPL---------EESGPVVLIAGGIGITPFRSMLRHLAADK-PGGEITLLYGAR 135 (223)
T ss_pred -----cccCc---------ccCCcEEEEecCCchhHHHHHHHHHHhhC-CCCcEEEEEecC
Confidence 43222 24689999999999999999999998764 357899999986
No 30
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=99.91 E-value=9.9e-24 Score=190.97 Aligned_cols=135 Identities=27% Similarity=0.465 Sum_probs=113.6
Q ss_pred EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567 98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI 177 (314)
Q Consensus 98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
|++++.++++++.|+|+.+.. . .++|
T Consensus 1 ~~~~~~~t~~~~~~~l~~~~~---~---------------------------------------------------~~~p 26 (232)
T cd06190 1 LVDVRELTHDVAEFRFALDGP---A---------------------------------------------------DFLP 26 (232)
T ss_pred CCceEEcCCCEEEEEEEcCCc---c---------------------------------------------------ccCC
Confidence 468899999999999997643 1 6799
Q ss_pred CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccccCC
Q psy5567 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGN 256 (314)
Q Consensus 178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y~~~ 256 (314)
|||+.|.++ +....|+||+++.+.+.+.++|+||.+ ++|.+|++|++ +++||.|.++||+|.
T Consensus 27 GQ~v~l~~~--~~~~~r~ySi~s~~~~~~~~~~~vk~~---------~~G~~s~~l~~~~~~g~~v~v~gP~G~------ 89 (232)
T cd06190 27 GQYALLALP--GVEGARAYSMANLANASGEWEFIIKRK---------PGGAASNALFDNLEPGDELELDGPYGL------ 89 (232)
T ss_pred CCEEEEECC--CCCcccCccCCcCCCCCCEEEEEEEEc---------CCCcchHHHhhcCCCCCEEEEECCccc------
Confidence 999999985 333679999999888778999999987 78999999965 799999999999995
Q ss_pred cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC-CCCccEEEEEEeC
Q psy5567 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTKMSLIFANQ 314 (314)
Q Consensus 257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~-~~~~~v~Li~~~r 314 (314)
|.+.+ ...++++||||||||||+++|++++...+ .+..+++|+|++|
T Consensus 90 --~~~~~---------~~~~~illIagG~GiaP~~~~l~~~~~~~~~~~~~v~l~~~~r 137 (232)
T cd06190 90 --AYLRP---------DEDRDIVCIAGGSGLAPMLSILRGAARSPYLSDRPVDLFYGGR 137 (232)
T ss_pred --ceecC---------CCCCcEEEEeeCcCHHHHHHHHHHHHhcccCCCCeEEEEEeec
Confidence 44432 13578999999999999999999998762 2357899999986
No 31
>PRK05802 hypothetical protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=200.96 Aligned_cols=148 Identities=16% Similarity=0.260 Sum_probs=122.0
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
+...++++|+++++++++++.|+|+.|+.....
T Consensus 61 ~~~~~~~~I~~~~~~t~dv~~l~l~~p~~~~~~----------------------------------------------- 93 (320)
T PRK05802 61 GRKTYECKIIKKENIEDNLIILTLKVPHKLARD----------------------------------------------- 93 (320)
T ss_pred ccccEeEEEEEEEEecCCEEEEEEECCchhhhc-----------------------------------------------
Confidence 356778999999999999999999987542111
Q ss_pred cccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEcccc
Q psy5567 170 FAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 249 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G 249 (314)
.+.||||++|+++..+....||||+++.+.+.+.++|+||+. |.+|++|+++++||+|.++||+|
T Consensus 94 ----~~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~~-----------G~~T~~L~~l~~Gd~l~v~GP~G 158 (320)
T PRK05802 94 ----LVYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEIR-----------GVKTKKIAKLNKGDEILLRGPYW 158 (320)
T ss_pred ----cCCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEec-----------ChhHHHHhcCCCCCEEEEeCCCC
Confidence 468999999998754555679999999988889999999964 99999999999999999999997
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
||.|.+.+. +....++++|||||+||||++++++++++++ .+++|+|++|
T Consensus 159 ------nG~F~l~~~------~~~~~~~~llIaGGiGIaPl~~l~~~l~~~~---~~v~li~g~r 208 (320)
T PRK05802 159 ------NGILGLKNI------KSTKNGKSLVIARGIGQAPGVPVIKKLYSNG---NKIIVIIDKG 208 (320)
T ss_pred ------cCcCCcccc------cccCCCeEEEEEeEEeHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence 345655321 0123468999999999999999999998875 3799999986
No 32
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=99.91 E-value=1.8e-23 Score=187.89 Aligned_cols=135 Identities=27% Similarity=0.484 Sum_probs=115.1
Q ss_pred EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567 98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI 177 (314)
Q Consensus 98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
|+++++++++++.|+|+.++. . .+.|
T Consensus 1 v~~~~~~~~~~~~~~l~~~~~---~---------------------------------------------------~~~p 26 (224)
T cd06187 1 VVSVERLTHDIAVVRLQLDQP---L---------------------------------------------------PFWA 26 (224)
T ss_pred CeeeeecCCCEEEEEEEeCCC---C---------------------------------------------------CcCC
Confidence 478899999999999997754 2 6789
Q ss_pred CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccccCC
Q psy5567 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGN 256 (314)
Q Consensus 178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y~~~ 256 (314)
|||+.|.++..+ ...|+||+++.+.+.+.++|+||.+ ++|.+|+||++ +++||.|.++||+|.
T Consensus 27 Gq~i~l~~~~~~-~~~r~ysi~s~~~~~~~~~~~i~~~---------~~G~~s~~l~~~l~~G~~v~i~gP~G~------ 90 (224)
T cd06187 27 GQYVNVTVPGRP-RTWRAYSPANPPNEDGEIEFHVRAV---------PGGRVSNALHDELKVGDRVRLSGPYGT------ 90 (224)
T ss_pred CceEEEEcCCCC-CcceeccccCCCCCCCEEEEEEEeC---------CCCcchHHHhhcCccCCEEEEeCCccc------
Confidence 999999986432 3679999999988778999999987 68999999976 999999999999994
Q ss_pred cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ...++++||||||||||+++|++++..++ +..+++|+|++|
T Consensus 91 --~~~~~---------~~~~~~lliagG~GI~p~~sll~~~~~~~-~~~~v~l~~~~~ 136 (224)
T cd06187 91 --FYLRR---------DHDRPVLCIAGGTGLAPLRAIVEDALRRG-EPRPVHLFFGAR 136 (224)
T ss_pred --eEecC---------CCCCCEEEEecCcCHHHHHHHHHHHHhcC-CCCCEEEEEecC
Confidence 55543 13578999999999999999999998765 357899999986
No 33
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=99.91 E-value=2.4e-23 Score=205.45 Aligned_cols=153 Identities=22% Similarity=0.348 Sum_probs=123.1
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
...+++|++++.++++++.|+|++++... .
T Consensus 132 ~~~~~~V~~~~~ls~~i~~l~l~~~~~~~-~------------------------------------------------- 161 (409)
T PRK05464 132 KKWECTVISNDNVATFIKELVLKIPEGEE-V------------------------------------------------- 161 (409)
T ss_pred eEEEEEEEEcccCCchhheEEEecCCCCc-c-------------------------------------------------
Confidence 45689999999999999999999875421 1
Q ss_pred cCCCCCCcEEEEEeeeC-----------------------------CceeeeeeeeecCCCCCceEEEEEEEEeecCCCC
Q psy5567 172 WLGLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 222 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~-----------------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~ 222 (314)
.|+||||++|.++.. +....|+||+++.+.+.+.++|+||++.+..-.+
T Consensus 162 --~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~~~~~~~~ 239 (409)
T PRK05464 162 --PFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPEEKGIIMLNVRIATPPPGNP 239 (409)
T ss_pred --cccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCCCCCeEEEEEEEeecCCCcC
Confidence 578999999998631 2356799999999988889999999853221111
Q ss_pred CCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC
Q psy5567 223 FPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT 302 (314)
Q Consensus 223 ~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~ 302 (314)
..++|.+|.||+++++||.|.++||.|+ |.+.. ..++++|||||||||||++|+++++.+..
T Consensus 240 ~~~~G~~S~~L~~l~~Gd~v~v~gP~G~--------f~~~~----------~~~~ivlIAgGtGIaP~~sml~~~l~~~~ 301 (409)
T PRK05464 240 DVPPGIMSSYIFSLKPGDKVTISGPFGE--------FFAKD----------TDAEMVFIGGGAGMAPMRSHIFDQLKRLK 301 (409)
T ss_pred CCCCCchhhHHHhCCCCCEEEEEccccC--------cEecC----------CCceEEEEEeccChhHHHHHHHHHHhCCC
Confidence 1257999999999999999999999995 54433 35789999999999999999998877643
Q ss_pred CCccEEEEEEeC
Q psy5567 303 DNTKMSLIFANQ 314 (314)
Q Consensus 303 ~~~~v~Li~~~r 314 (314)
...+++|+|++|
T Consensus 302 ~~~~v~L~~g~r 313 (409)
T PRK05464 302 SKRKISFWYGAR 313 (409)
T ss_pred CCceEEEEEecC
Confidence 357899999986
No 34
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.91 E-value=3.8e-23 Score=226.97 Aligned_cols=163 Identities=25% Similarity=0.490 Sum_probs=137.0
Q ss_pred cccccccCCCceEEEEEEEEE---EeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeee
Q psy5567 82 KELKTLVDPDVKVPLKLKEKI---EINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRV 158 (314)
Q Consensus 82 ~~~~~~l~p~~~~~~~l~~~~---~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (314)
+.++..+++.+|.+++|++++ +++++++.|+|++|+....+
T Consensus 903 ~~~~~~~~~~~w~~~~l~~~~~~~~~~~~~~~~~f~lp~~~~~~------------------------------------ 946 (1167)
T PTZ00306 903 QKKKYGLSKDKWTTVVVREVREGGQFGTGSRVLRFNLPGALQRS------------------------------------ 946 (1167)
T ss_pred hccCcccCCCceEEEEEEEEeccccccCCeEEEEEECCCccccc------------------------------------
Confidence 345688999999999999998 56999999999998653322
Q ss_pred ccCCCCCCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCC
Q psy5567 159 VSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV 238 (314)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~ 238 (314)
++.|||||.|+.+.++....|+|||+|.+++.+.++|+||. ++|.+|+||++|++
T Consensus 947 ---------------~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr~----------~~G~~S~~L~~l~~ 1001 (1167)
T PTZ00306 947 ---------------GLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILARG----------DKGTLKEWISALRP 1001 (1167)
T ss_pred ---------------CCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEEc----------CCChhHHHHhhCCC
Confidence 78999999999877777889999999999888999999984 67999999999999
Q ss_pred CCeEEEEccccCcccc--CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC--CCCccEEEEEEeC
Q psy5567 239 GEPINVSGPRGRLAYL--GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP--TDNTKMSLIFANQ 314 (314)
Q Consensus 239 Gd~v~v~GP~G~~~y~--~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~--~~~~~v~Li~~~r 314 (314)
||+|+++||.|.+.+. ..+.|.++. ...++++|||||||||||+||++++++++ .+.++++|+|++|
T Consensus 1002 Gd~v~v~gp~G~~~~~~p~~~~f~~~~---------~~~~~ivlIAGGtGItP~~sml~~~l~~~~~~~~~~i~Llyg~r 1072 (1167)
T PTZ00306 1002 GDSVEMKACGGLRIERRPADKQFVFRG---------HVIRKLALIAGGTGVAPMLQIIRAALKKPYVDSIESIRLIYAAE 1072 (1167)
T ss_pred CCEEEEeCCcCccccccCccceeeecc---------CCCceEEEEECCccHhHHHHHHHHHHhCcccCCCceEEEEEEeC
Confidence 9999999998854332 234577654 24689999999999999999999998765 2346899999987
No 35
>PRK05713 hypothetical protein; Provisional
Probab=99.90 E-value=3.4e-23 Score=197.24 Aligned_cols=140 Identities=20% Similarity=0.356 Sum_probs=118.0
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
..+++|++++++++|++.|+|+.+.. .
T Consensus 91 ~~~~~V~~~~~~t~dv~~l~l~~~~~---~-------------------------------------------------- 117 (312)
T PRK05713 91 GLPARVVALDWLGGDVLRLRLEPERP---L-------------------------------------------------- 117 (312)
T ss_pred cCCeEEEEEecCCCCEEEEEEccCCc---C--------------------------------------------------
Confidence 35699999999999999999985421 2
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcc
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA 252 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~ 252 (314)
.+.||||++|.++ + ...|+||+++.|.+.+.++|+||++ ++|.+|++|+++++||+|.++||.|.
T Consensus 118 -~~~~GQfv~l~~~--~-~~~R~ySias~p~~~~~l~~~I~~~---------~~G~~s~~l~~l~~Gd~v~l~~p~gg-- 182 (312)
T PRK05713 118 -RYRAGQHLVLWTA--G-GVARPYSLASLPGEDPFLEFHIDCS---------RPGAFCDAARQLQVGDLLRLGELRGG-- 182 (312)
T ss_pred -CcCCCCEEEEecC--C-CcccccccCcCCCCCCeEEEEEEEc---------CCCccchhhhcCCCCCEEEEccCCCC--
Confidence 6899999999874 3 3689999999988778999999987 78999999999999999999999983
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+++ ....++++|||||||||||++|++++++.+. ..+++|+|++|
T Consensus 183 -----~~~~~~--------~~~~~~~vlIAgGtGiaP~~s~l~~~~~~~~-~~~v~l~~g~r 230 (312)
T PRK05713 183 -----ALHYDP--------DWQERPLWLLAAGTGLAPLWGILREALRQGH-QGPIRLLHLAR 230 (312)
T ss_pred -----ceEecC--------CCCCCcEEEEecCcChhHHHHHHHHHHhcCC-CCcEEEEEEcC
Confidence 344443 0134789999999999999999999987763 46899999987
No 36
>PRK08051 fre FMN reductase; Validated
Probab=99.90 E-value=6.9e-23 Score=186.85 Aligned_cols=138 Identities=17% Similarity=0.246 Sum_probs=115.6
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
+.+++|++++.++++++.|+|+.++. .
T Consensus 2 ~~~~~v~~i~~~~~~~~~l~l~~~~~---~-------------------------------------------------- 28 (232)
T PRK08051 2 TLSCKVTSVEAITDTVYRVRLVPEAP---F-------------------------------------------------- 28 (232)
T ss_pred eeEEEEEEEecCCCCeEEEEEecCCC---C--------------------------------------------------
Confidence 57899999999999999999986542 1
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEccccCc
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRL 251 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G~~ 251 (314)
.++||||+++.++. ...|+||+++.+.+++.++|+||.. ++|..+.++ +++++||.|.+.||+|.
T Consensus 29 -~~~pGQ~v~l~~~~---~~~r~ySias~p~~~~~l~~~v~~~---------~~~~~~~~~~~~l~~G~~v~v~gP~G~- 94 (232)
T PRK08051 29 -SFRAGQYLMVVMGE---KDKRPFSIASTPREKGFIELHIGAS---------ELNLYAMAVMERILKDGEIEVDIPHGD- 94 (232)
T ss_pred -ccCCCCEEEEEcCC---CcceeecccCCCCCCCcEEEEEEEc---------CCCcchHHHHHHcCCCCEEEEEcCCCc-
Confidence 67999999999853 3569999999987778999999987 567666666 89999999999999995
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ...++++||||||||||+++|+++++..+. ..++.|+|++|
T Consensus 95 -------~~~~~---------~~~~~~vliagG~GiaP~~~~l~~~~~~~~-~~~v~l~~g~r 140 (232)
T PRK08051 95 -------AWLRE---------ESERPLLLIAGGTGFSYARSILLTALAQGP-NRPITLYWGGR 140 (232)
T ss_pred -------eEccC---------CCCCcEEEEecCcCcchHHHHHHHHHHhCC-CCcEEEEEEec
Confidence 44433 135789999999999999999999987653 57899999987
No 37
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=99.90 E-value=3e-23 Score=188.58 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=111.0
Q ss_pred EEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCCCc
Q psy5567 100 EKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQ 179 (314)
Q Consensus 100 ~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ 179 (314)
+++.+++|++.|+|+++++.... +|.|||
T Consensus 2 ~~~~~s~~v~~~~l~~~~~~~~~---------------------------------------------------~~~pGQ 30 (220)
T cd06197 2 KSEVITPTLTRFTFELSPPDVVG---------------------------------------------------KWTPGQ 30 (220)
T ss_pred cceecccceeEEEEEecCCcccc---------------------------------------------------ccCCCc
Confidence 57889999999999998653322 789999
Q ss_pred EEEEEeeeC----------------CceeeeeeeeecCCCCC---ceEEEEEEEEeecCCCCCCCCChhchHhhcCC--C
Q psy5567 180 HLSLSATIN----------------DEFVARAYTPVTSDEHH---GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK--V 238 (314)
Q Consensus 180 ~v~l~~~~~----------------~~~~~R~YTp~s~~~~~---g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~--~ 238 (314)
|+.|.++.. ++...|+||++|.+.+. ++++|+||.. |.+|++|.++. .
T Consensus 31 ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~~-----------G~~T~~L~~~~~~~ 99 (220)
T cd06197 31 YITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRKK-----------GPVTGFLFQVARRL 99 (220)
T ss_pred eEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEeC-----------CCCCHHHHHhhhcc
Confidence 999998631 23467999999998654 7999999964 99999997653 3
Q ss_pred ---CCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 239 ---GEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 239 ---Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|+.+.++||.|. |.++.. .....++++|||||||||||++|+++++....+.++++|+|++|
T Consensus 100 ~~~G~~v~v~gP~G~--------f~~~~~------~~~~~~~illIagG~GItP~~sil~~l~~~~~~~~~v~l~~~~r 164 (220)
T cd06197 100 REQGLEVPVLGVGGE--------FTLSLP------GEGAERKMVWIAGGVGITPFLAMLRAILSSRNTTWDITLLWSLR 164 (220)
T ss_pred cCCCceEEEEecCCc--------ccCCcc------cccCCceEEEEecccchhhHHHHHHHHHhcccCCCcEEEEEEec
Confidence 999999999995 544320 00235789999999999999999999987654457999999987
No 38
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=99.90 E-value=6.2e-23 Score=187.94 Aligned_cols=133 Identities=20% Similarity=0.346 Sum_probs=112.4
Q ss_pred EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567 98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI 177 (314)
Q Consensus 98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
|++++++++++++|+|+.|+. .. .++|
T Consensus 1 i~~~~~~t~~~~~l~l~~~~~--~~---------------------------------------------------~~~p 27 (243)
T cd06192 1 IVKKEQLEPNLVLLTIKAPLA--AR---------------------------------------------------LFRP 27 (243)
T ss_pred CceEEEecCCEEEEEEEccch--hh---------------------------------------------------cCCC
Confidence 468899999999999998653 12 6799
Q ss_pred CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCc
Q psy5567 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNG 257 (314)
Q Consensus 178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g 257 (314)
|||++|.++.++....|+||+++.+.+.++++|+||.. |.+|+||.++++||.|.++||+|++.
T Consensus 28 GQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~~-----------G~~t~~l~~~~~G~~l~i~gP~G~~~----- 91 (243)
T cd06192 28 GQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEIR-----------GPKTKLIAELKPGEKLDVMGPLGNGF----- 91 (243)
T ss_pred CCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEEc-----------CchHHHHHhCCCCCEEEEEccCCCCC-----
Confidence 99999998654556789999999988789999999963 89999999999999999999999532
Q ss_pred ceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 258 EFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 258 ~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
..+ ...++++|||||||||||++|++++..++ .+++|+|++|
T Consensus 92 ---~~~---------~~~~~~lliagGtGiap~~~~l~~~~~~~---~~v~l~~~~r 133 (243)
T cd06192 92 ---EGP---------KKGGTVLLVAGGIGLAPLLPIAKKLAANG---NKVTVLAGAK 133 (243)
T ss_pred ---ccC---------CCCCEEEEEeCcccHHHHHHHHHHHHHCC---CeEEEEEecC
Confidence 221 13578999999999999999999998763 5899999986
No 39
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=99.90 E-value=3.2e-23 Score=204.38 Aligned_cols=153 Identities=22% Similarity=0.372 Sum_probs=122.7
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
....+++|++++.++++++.|+|++++... .
T Consensus 127 ~~~~~~~v~~~~~~s~~i~~l~l~~~~~~~-~------------------------------------------------ 157 (405)
T TIGR01941 127 VKKWECEVISNDNVATFIKELVLKLPDGES-V------------------------------------------------ 157 (405)
T ss_pred cceeeeEEEEcccccchhheEEEecCCCce-e------------------------------------------------
Confidence 345679999999999999999999875421 1
Q ss_pred ccCCCCCCcEEEEEeeeC-----------------------------CceeeeeeeeecCCCCCceEEEEEEEEeecC-C
Q psy5567 171 AWLGLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNV-H 220 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~-----------------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~-~ 220 (314)
.|.||||+++.++.. +....|+||++|.+.+.+.++|+||+..++. +
T Consensus 158 ---~~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~~~~~~~ 234 (405)
T TIGR01941 158 ---PFKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPAEKGIIKLNVRIATPPFIN 234 (405)
T ss_pred ---eecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCCCCCeEEEEEEEeccCccc
Confidence 578999999988632 2346799999999988899999999852221 1
Q ss_pred CCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567 221 PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300 (314)
Q Consensus 221 ~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~ 300 (314)
.+. ++|.+|.||+++++||.|.++||+|+ |.+.+ ..++++|||||||||||++|+++++.+
T Consensus 235 ~~~-~~G~~S~~L~~l~~Gd~v~i~gP~G~--------f~l~~----------~~~~lvlIAgGtGIaP~lsmi~~~l~~ 295 (405)
T TIGR01941 235 SDI-PPGIMSSYIFSLKPGDKVTISGPFGE--------FFAKD----------TDAEMVFIGGGAGMAPMRSHIFDQLKR 295 (405)
T ss_pred CCC-CCCcHHHHHhcCCCcCEEEEEeccCC--------CeecC----------CCCCEEEEecCcCcchHHHHHHHHHhc
Confidence 122 57999999999999999999999995 55443 247899999999999999999987765
Q ss_pred CCCCccEEEEEEeC
Q psy5567 301 PTDNTKMSLIFANQ 314 (314)
Q Consensus 301 ~~~~~~v~Li~~~r 314 (314)
.....+++|+|++|
T Consensus 296 ~~~~~~v~l~~g~R 309 (405)
T TIGR01941 296 LKSKRKISFWYGAR 309 (405)
T ss_pred CCCCCeEEEEEecC
Confidence 33356899999986
No 40
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=99.90 E-value=5.8e-23 Score=194.19 Aligned_cols=143 Identities=23% Similarity=0.377 Sum_probs=116.2
Q ss_pred CceEEEEEEEEEEeC----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCC
Q psy5567 91 DVKVPLKLKEKIEIN----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEP 166 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
..+.+++|++++.++ ++++.|+|++++..+.. .
T Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~l~l~~~~~~~~~-~------------------------------------------ 79 (289)
T cd06201 43 PRTKALELVERKDYGAAVQAPTAILRFKPAKRKLSG-K------------------------------------------ 79 (289)
T ss_pred CCccceEEEeeeecCCCCCCccEEEEEeCCCccccc-C------------------------------------------
Confidence 468899999999999 69999999987631100 0
Q ss_pred CcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEc
Q psy5567 167 PFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSG 246 (314)
Q Consensus 167 ~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~G 246 (314)
.+..+.||||+.|.. ++....|+|||++.+. ++.++|+||.+ ++|.+|+||+++++||.|.+++
T Consensus 80 ----~~~~~~pGQ~v~v~~--~g~~~~R~YSias~p~-~g~l~l~Vk~~---------~~G~~S~~L~~l~~Gd~v~v~~ 143 (289)
T cd06201 80 ----GLPSFEAGDLLGILP--PGSDVPRFYSLASSSS-DGFLEICVRKH---------PGGLCSGYLHGLKPGDTIKAFI 143 (289)
T ss_pred ----CCCCcCccCEEEEec--CCCCCCceEecCCCCC-CCeEEEEEEeC---------CCccchhhHhhCCCcCEEEEEe
Confidence 011689999999975 4556779999999884 58999999987 7899999999999999999985
Q ss_pred -cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 247 -PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 247 -P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.| .|.++. ..++++|||||||||||++|+++.. +.++++|+|++|
T Consensus 144 ~~~g--------~F~~~~----------~~~~lvlIAgGtGIaP~~s~l~~~~----~~~~v~L~~g~r 190 (289)
T cd06201 144 RPNP--------SFRPAK----------GAAPVILIGAGTGIAPLAGFIRANA----ARRPMHLYWGGR 190 (289)
T ss_pred ccCC--------CccCCC----------CCCCEEEEecCcCHHHHHHHHHhhh----ccCCEEEEEEec
Confidence 666 566543 3578999999999999999999863 246799999987
No 41
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.90 E-value=9.6e-23 Score=189.60 Aligned_cols=137 Identities=31% Similarity=0.545 Sum_probs=122.3
Q ss_pred EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567 95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG 174 (314)
Q Consensus 95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (314)
.++|++++.++++++.|+|+.+... + .
T Consensus 9 ~~~I~~~~~is~~~~~l~~~~~~~~--~---------------------------------------------------~ 35 (252)
T COG0543 9 SYKVVEKEEISPDTFLLRLRLPFVA--L---------------------------------------------------T 35 (252)
T ss_pred ccEEEEEEEecCceEEEEEeccccc--c---------------------------------------------------c
Confidence 6999999999999999999988664 3 6
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcccc
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYL 254 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~ 254 (314)
+.||||++|+.+. ...||||+++.+++.|.++|.|+++ +.|++|.++..+++||.|.++||+|+
T Consensus 36 ~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~---------~~G~~T~~i~~~k~gd~i~v~GP~G~---- 99 (252)
T COG0543 36 FKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVY---------EVGKVTKYIFGLKEGDKIRVRGPLGN---- 99 (252)
T ss_pred cCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEE---------eCChHHHHHhhccCCCEEEEEcCCCC----
Confidence 8999999999964 6789999999999889999999998 88999999999999999999999996
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.... ..+++++||||||+||++++++++.+++ +..+|+++|++|
T Consensus 100 ---~~~~~~----------~~~~vlliagGtG~aPl~~i~~~~~~~~-~~~~V~~~~G~~ 145 (252)
T COG0543 100 ---GFLREK----------IGKPVLLIAGGTGIAPLYAIAKELKEKG-DANKVTLLYGAR 145 (252)
T ss_pred ---Cccccc----------cCCcEEEEecccCHhHHHHHHHHHHhcC-CCceEEEEEecc
Confidence 344433 3455999999999999999999999988 788999999986
No 42
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=99.90 E-value=1e-22 Score=183.24 Aligned_cols=134 Identities=19% Similarity=0.355 Sum_probs=112.3
Q ss_pred EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567 98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI 177 (314)
Q Consensus 98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
|++++.++++++.|+|+.++. . .++|
T Consensus 1 V~~~~~~~~~~~~i~l~~~~~---~---------------------------------------------------~~~p 26 (222)
T cd06194 1 VVSLQRLSPDVLRVRLEPDRP---L---------------------------------------------------PYLP 26 (222)
T ss_pred CceeeecCCCEEEEEEecCCC---C---------------------------------------------------CcCC
Confidence 468899999999999997642 2 6789
Q ss_pred CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCccccCC
Q psy5567 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLAYLGN 256 (314)
Q Consensus 178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~y~~~ 256 (314)
|||++|+++. ...|+||+++.+.+.+.++|+||.+ ++|.+|+||++ +++||.|.+.||+|.
T Consensus 27 GQ~v~l~~~~---~~~r~ySi~s~~~~~~~~~~~i~~~---------~~G~~s~~l~~~~~~G~~v~i~gP~G~------ 88 (222)
T cd06194 27 GQYVNLRRAG---GLARSYSPTSLPDGDNELEFHIRRK---------PNGAFSGWLGEEARPGHALRLQGPFGQ------ 88 (222)
T ss_pred CCEEEEEcCC---CCceeeecCCCCCCCCEEEEEEEec---------cCCccchHHHhccCCCCEEEEecCcCC------
Confidence 9999999853 3469999999988778999999987 78999999976 799999999999995
Q ss_pred cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ....++++|||||||||||++++++++..+. ..+++|+|++|
T Consensus 89 --~~~~~--------~~~~~~~v~iagG~Giap~~~~l~~~~~~~~-~~~v~l~~~~r 135 (222)
T cd06194 89 --AFYRP--------EYGEGPLLLVGAGTGLAPLWGIARAALRQGH-QGEIRLVHGAR 135 (222)
T ss_pred --eeccC--------CCCCCCEEEEecCcchhhHHHHHHHHHhcCC-CccEEEEEecC
Confidence 33321 0235789999999999999999999886643 57899999986
No 43
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=99.90 E-value=8.6e-23 Score=189.02 Aligned_cols=137 Identities=23% Similarity=0.469 Sum_probs=113.6
Q ss_pred EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567 98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI 177 (314)
Q Consensus 98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
|++++.+|+++..|+|+++.+.... ..+.|
T Consensus 1 v~~i~~~t~~v~~~~l~~~~~~~~~--------------------------------------------------~~~~p 30 (253)
T cd06221 1 IVEVVDETEDIKTFTLRLEDDDEEL--------------------------------------------------FTFKP 30 (253)
T ss_pred CceEEeccCCceEEEEEeCCCcccc--------------------------------------------------CCcCC
Confidence 5688999999999999987653110 16899
Q ss_pred CcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCc
Q psy5567 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNG 257 (314)
Q Consensus 178 GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g 257 (314)
|||+.|.++..+ .|+||+++.+.+.+.++|.||.. |.+|++|+++++||.+.++||+|.
T Consensus 31 GQ~i~l~~~~~~---~~pySi~s~~~~~~~l~~~Ik~~-----------G~~S~~L~~l~~G~~v~i~gP~G~------- 89 (253)
T cd06221 31 GQFVMLSLPGVG---EAPISISSDPTRRGPLELTIRRV-----------GRVTEALHELKPGDTVGLRGPFGN------- 89 (253)
T ss_pred CCEEEEEcCCCC---ccceEecCCCCCCCeEEEEEEeC-----------ChhhHHHHcCCCCCEEEEECCcCC-------
Confidence 999999986433 38999999998779999999963 899999999999999999999995
Q ss_pred ceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 258 EFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 258 ~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ...++++||||||||||+++|++++++...+..+++|+|++|
T Consensus 90 ~f~~~~---------~~~~~iv~IA~G~GitP~ls~l~~~~~~~~~~~~i~Li~~~r 137 (253)
T cd06221 90 GFPVEE---------MKGKDLLLVAGGLGLAPLRSLINYILDNREDYGKVTLLYGAR 137 (253)
T ss_pred Cccccc---------ccCCeEEEEccccchhHHHHHHHHHHhccccCCcEEEEEecC
Confidence 244332 135899999999999999999999998654457899999986
No 44
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=99.89 E-value=1.6e-22 Score=190.42 Aligned_cols=155 Identities=20% Similarity=0.260 Sum_probs=116.4
Q ss_pred CCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCC
Q psy5567 90 PDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPES 164 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
+.....++|+++++++ ++++.|+|+.+.. .
T Consensus 5 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~~~---~------------------------------------------ 39 (286)
T cd06208 5 PKNPLIGKVVSNTRLTGPDAPGEVCHIVIDHGGK---L------------------------------------------ 39 (286)
T ss_pred CCCCeEEEEEeceeccCCCCCcceEEEEEeCCCc---c------------------------------------------
Confidence 4567789999999999 6999999986321 2
Q ss_pred CCCcccccCCCCCCcEEEEEeeeC----C-ceeeeeeeeecCCCC----CceEEEEEEEEeecC-CCCCCCCChhchHhh
Q psy5567 165 EPPFHFAWLGLPIGQHLSLSATIN----D-EFVARAYTPVTSDEH----HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLE 234 (314)
Q Consensus 165 ~~~~~~~~~~~~~GQ~v~l~~~~~----~-~~~~R~YTp~s~~~~----~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~ 234 (314)
.+.||||++|..+.. + ....|+||+++.+.+ .+.++|+||...... .......|.+|+||+
T Consensus 40 ---------~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~~~~~~~~~~~G~~S~~L~ 110 (286)
T cd06208 40 ---------PYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVYTDPETDETKKGVCSNYLC 110 (286)
T ss_pred ---------cccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEEecCCCCceeccchHHHHh
Confidence 689999999986521 1 124799999998743 479999999871100 000011299999999
Q ss_pred cCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC----CCCccEEEE
Q psy5567 235 NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP----TDNTKMSLI 310 (314)
Q Consensus 235 ~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~----~~~~~v~Li 310 (314)
++++||.|.++||.|. |.+.+ ....++++|||||||||||++|+++++.+. ....+++|+
T Consensus 111 ~l~~Gd~v~v~gP~G~--------~~~~~--------~~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~v~L~ 174 (286)
T cd06208 111 DLKPGDDVQITGPVGK--------TMLLP--------EDPNATLIMIATGTGIAPFRSFLRRLFREKHADYKFTGLAWLF 174 (286)
T ss_pred hCCCCCEEEEEeecCC--------cccCC--------CCCCCCEEEEecCccHHHHHHHHHHHHHhhhcccCCCCCEEEE
Confidence 9999999999999995 33332 012468999999999999999999988651 224689999
Q ss_pred EEeC
Q psy5567 311 FANQ 314 (314)
Q Consensus 311 ~~~r 314 (314)
|++|
T Consensus 175 ~g~r 178 (286)
T cd06208 175 FGVP 178 (286)
T ss_pred EEec
Confidence 9987
No 45
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=99.89 E-value=2e-22 Score=192.09 Aligned_cols=160 Identities=18% Similarity=0.206 Sum_probs=120.1
Q ss_pred cccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeecc
Q psy5567 86 TLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVS 160 (314)
Q Consensus 86 ~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (314)
++--+....+++|++++.++ ++++.|+|+++.. .
T Consensus 17 ~~~~~~~~~~~~V~~i~~~~~p~~~~~v~~l~l~~~~~---~-------------------------------------- 55 (307)
T PLN03116 17 NLYKPKAPYTATIVSVERIVGPKAPGETCHIVIDHGGN---V-------------------------------------- 55 (307)
T ss_pred eeccCCCCEEEEEEeeEEcccCCCCCceEEEEEecCCC---C--------------------------------------
Confidence 33335667799999999999 8999999997632 1
Q ss_pred CCCCCCCcccccCCCCCCcEEEEEeee-----CCc-eeeeeeeeecCCCC---C-ceEEEEEEEEeecC---CCCCC-CC
Q psy5567 161 APESEPPFHFAWLGLPIGQHLSLSATI-----NDE-FVARAYTPVTSDEH---H-GYMDLVVKVYFKNV---HPKFP-DG 226 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~GQ~v~l~~~~-----~~~-~~~R~YTp~s~~~~---~-g~l~l~VK~~~~~~---~~~~~-~~ 226 (314)
.|.||||+.|.++. ++. ...|+||++|.+.+ . .+++|+||+..+.+ +...+ ++
T Consensus 56 -------------~f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~~~~~~~~~~~~~~~~ 122 (307)
T PLN03116 56 -------------PYWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRAVYYDPETGKEDPAKK 122 (307)
T ss_pred -------------ceecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEEEEecCCcCCCCCccC
Confidence 67899999998752 122 24799999998843 2 37999999763211 11111 57
Q ss_pred ChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC----
Q psy5567 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT---- 302 (314)
Q Consensus 227 G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~---- 302 (314)
|.+|+||+++++||.|.++||.|. |.+.+ .....++++|||||||||||++|+++++..+.
T Consensus 123 G~~S~~L~~l~~Gd~v~v~gP~G~--------f~~~~-------~~~~~~~~vlIAgGtGIaP~~sml~~~l~~~~~~~~ 187 (307)
T PLN03116 123 GVCSNFLCDAKPGDKVQITGPSGK--------VMLLP-------EEDPNATHIMVATGTGIAPFRGFLRRMFMEDVPAFK 187 (307)
T ss_pred cchhhhHhhCCCCCEEEEEEecCC--------ceeCC-------CCCCCCcEEEEecCccHHHHHHHHHHHHhhcccccc
Confidence 999999988999999999999995 44422 00134789999999999999999999876432
Q ss_pred CCccEEEEEEeC
Q psy5567 303 DNTKMSLIFANQ 314 (314)
Q Consensus 303 ~~~~v~Li~~~r 314 (314)
...+++|+||+|
T Consensus 188 ~~~~v~L~~g~R 199 (307)
T PLN03116 188 FGGLAWLFLGVA 199 (307)
T ss_pred CCCcEEEEEecC
Confidence 135799999987
No 46
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=99.89 E-value=2.4e-22 Score=185.35 Aligned_cols=136 Identities=17% Similarity=0.365 Sum_probs=116.0
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
++.+++|++++++++|++.|+|+.+. ..
T Consensus 3 ~~~~~~V~~~~~~t~d~~~l~l~~~~---~~------------------------------------------------- 30 (250)
T PRK00054 3 KPENMKIVENKEIAPNIYTLVLDGEK---VF------------------------------------------------- 30 (250)
T ss_pred CceEEEEEEEEEecCCeEEEEEeCcc---cc-------------------------------------------------
Confidence 46789999999999999999999541 11
Q ss_pred cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567 172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL 251 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~ 251 (314)
.+.||||+.|.++..+....|+||+++.+ .++++|+||.. |.+|++|+++++||.|.+.||+|.
T Consensus 31 --~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~l~l~Vk~~-----------G~~t~~l~~l~~G~~v~i~gP~G~- 94 (250)
T PRK00054 31 --DMKPGQFVMVWVPGVEPLLERPISISDID--KNEITILYRKV-----------GEGTKKLSKLKEGDELDIRGPLGN- 94 (250)
T ss_pred --CCCCCcEEEEEeCCCCCcCceeeEEeeeC--CCEEEEEEEEc-----------ChHHHHHhcCCCCCEEEEEcccCC-
Confidence 68999999999876555568999999988 57999999964 899999999999999999999995
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ..++++||||||||||++++++++..++ .+++|+|++|
T Consensus 95 ------~f~l~~----------~~~~~vlIagG~GiaP~~s~l~~~~~~~---~~v~l~~~~r 138 (250)
T PRK00054 95 ------GFDLEE----------IGGKVLLVGGGIGVAPLYELAKELKKKG---VEVTTVLGAR 138 (250)
T ss_pred ------CCCCCC----------CCCeEEEEeccccHHHHHHHHHHHHHcC---CcEEEEEEcC
Confidence 355543 3579999999999999999999998764 4799999986
No 47
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=99.89 E-value=1.3e-22 Score=189.23 Aligned_cols=134 Identities=25% Similarity=0.422 Sum_probs=112.4
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
..+++|++++++|++++.|+|+.+ .
T Consensus 7 ~~~~~v~~i~~~t~~~~~~~l~~~-----~-------------------------------------------------- 31 (263)
T PRK08221 7 PAAYKILDITKHTDIEYTFRVEVD-----G-------------------------------------------------- 31 (263)
T ss_pred CccEEEEEEeccCCcEEEEEecCC-----C--------------------------------------------------
Confidence 456999999999999999999854 1
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcc
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA 252 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~ 252 (314)
.++||||+.|+++..+ .|+||+++.+ ++.++|+||.. |.+|++|+++++||.|.++||+|.
T Consensus 32 -~~~pGQfi~l~~~~~~---~~pySi~~~~--~~~~~~~Ik~~-----------G~~S~~L~~l~~Gd~v~v~gP~G~-- 92 (263)
T PRK08221 32 -PVKPGQFFEVSLPKVG---EAPISVSDYG--DGYIDLTIRRV-----------GKVTDEIFNLKEGDKLFLRGPYGN-- 92 (263)
T ss_pred -CCCCCceEEEEeCCCC---cceeeccCCC--CCEEEEEEEeC-----------CchhhHHHhCCCCCEEEEECCCCC--
Confidence 4689999999986433 3899998764 57899999964 999999999999999999999995
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ...++++|||||||||||++++++++.++.+.++++|+|++|
T Consensus 93 -----~f~~~~---------~~~~~~llIAgGtGItP~~sil~~~~~~~~~~~~v~L~~g~r 140 (263)
T PRK08221 93 -----GFPVDT---------YKGKELIVVAGGTGVAPVKGLMRYFYENPQEIKSLDLILGFK 140 (263)
T ss_pred -----CcccCc---------cCCccEEEEcccccHHHHHHHHHHHHhCcccCceEEEEEecC
Confidence 355543 135789999999999999999999987654457999999987
No 48
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.89 E-value=1.9e-22 Score=185.96 Aligned_cols=133 Identities=25% Similarity=0.451 Sum_probs=112.5
Q ss_pred EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567 98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI 177 (314)
Q Consensus 98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
|++++.++++++.|+|+.++. .. .+.|
T Consensus 1 V~~~~~~t~~v~~l~l~~~~~--~~---------------------------------------------------~~~p 27 (246)
T cd06218 1 VLSNREIADDIYRLVLEAPEI--AA---------------------------------------------------AAKP 27 (246)
T ss_pred CcceeEecCCeEEEEEeCcch--hc---------------------------------------------------cCCC
Confidence 468899999999999997752 12 6899
Q ss_pred CcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCC
Q psy5567 178 GQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGN 256 (314)
Q Consensus 178 GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~ 256 (314)
|||+.|.++. ++....|+||+++.+.+++.++|+||.+ |.+|+||+++++||+|.++||+|.
T Consensus 28 GQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~-----------G~~s~~l~~l~~Gd~v~i~gP~G~------ 90 (246)
T cd06218 28 GQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV-----------GKGTRLLSELKAGDELDVLGPLGN------ 90 (246)
T ss_pred CcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEE-----------CcchHHHhcCCCCCEEEEEecCCC------
Confidence 9999999975 2345679999999887778999999975 788999999999999999999995
Q ss_pred cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+++ ..++++||||||||||+++|++++..++ .+++|+|++|
T Consensus 91 -~~~~~~----------~~~~~vlIagGtGIaP~~s~l~~~~~~~---~~v~l~~~~r 134 (246)
T cd06218 91 -GFDLPD----------DDGKVLLVGGGIGIAPLLFLAKQLAERG---IKVTVLLGFR 134 (246)
T ss_pred -CcCCCC----------CCCcEEEEecccCHHHHHHHHHHHHhcC---CceEEEEEcc
Confidence 344432 3689999999999999999999998743 5899999986
No 49
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=99.89 E-value=3.7e-22 Score=197.78 Aligned_cols=164 Identities=20% Similarity=0.301 Sum_probs=127.3
Q ss_pred ccccccccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceee
Q psy5567 81 KKELKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWC 155 (314)
Q Consensus 81 ~~~~~~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (314)
.++...+..+....+++|++++.++ ++++.|+|+.++.. .
T Consensus 130 ~~~~~~~~~~~~~~~a~V~~~~~l~~~~~~~~v~~l~L~~~~~~--~--------------------------------- 174 (411)
T TIGR03224 130 AHPYVNLYGVKAPITATVVGNYRLTDEDASSDIHHIVLDFGSHP--F--------------------------------- 174 (411)
T ss_pred cCCccccccCCCCeEEEEeeeEEccCCCCCCceEEEEEeCCCCc--C---------------------------------
Confidence 4556777888888999999999995 49999999876421 1
Q ss_pred eeeccCCCCCCCcccccCCCCCCcEEEEEeee---CCc-eeeeeeeeecCCCCC----ceEEEEEEEEeecCCCCCCCCC
Q psy5567 156 SRVVSAPESEPPFHFAWLGLPIGQHLSLSATI---NDE-FVARAYTPVTSDEHH----GYMDLVVKVYFKNVHPKFPDGG 227 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~---~~~-~~~R~YTp~s~~~~~----g~l~l~VK~~~~~~~~~~~~~G 227 (314)
.+.||||++|.++. ++. ...|+||++|.++.. +.++|+||++.. .+...+.+|
T Consensus 175 ------------------~~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~~-~~~g~~~~G 235 (411)
T TIGR03224 175 ------------------PVLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVTT-DHQGNAVRG 235 (411)
T ss_pred ------------------CccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEEe-cCCCCcCcc
Confidence 67999999998753 222 357999999986421 479999998731 223334579
Q ss_pred hhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC--CCCCc
Q psy5567 228 KMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD--PTDNT 305 (314)
Q Consensus 228 ~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~--~~~~~ 305 (314)
.+|+||+++++||+|.++||+|+ .|.++. ...++++|||||||||||++|++++... ..+..
T Consensus 236 ~~S~~L~~lk~Gd~v~v~GP~G~-------~f~lp~---------~~~~~lllIagGtGIAP~~s~l~~~~~~~~~~~~~ 299 (411)
T TIGR03224 236 VASNYLCDLKKGDKVQVIGPFGS-------TFLMPN---------HPESSIMMICTGTGSAPMRAMTERRRRRRDHGEGG 299 (411)
T ss_pred cchhHHhcCCCcCEEEEEeccCC-------cccCCC---------CCCCCEEEEecccCcHHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999996 354443 1247899999999999999999998752 11357
Q ss_pred cEEEEEEeC
Q psy5567 306 KMSLIFANQ 314 (314)
Q Consensus 306 ~v~Li~~~r 314 (314)
+++|+||+|
T Consensus 300 ~v~L~~G~R 308 (411)
T TIGR03224 300 KLMLFFGAR 308 (411)
T ss_pred CEEEEEecC
Confidence 899999987
No 50
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=99.89 E-value=1.8e-22 Score=184.60 Aligned_cols=135 Identities=16% Similarity=0.224 Sum_probs=113.3
Q ss_pred EEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCC
Q psy5567 98 LKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPI 177 (314)
Q Consensus 98 l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (314)
|++++++|+++++|+|+.++..... .+.|
T Consensus 1 V~~~~~~s~~~~~l~l~~~~~~~~~---------------------------------------------------~~~p 29 (235)
T cd06193 1 VVRVERLTPHMRRITLGGPDLAGFP---------------------------------------------------SDGP 29 (235)
T ss_pred CceeEecCCCEEEEEEecCccccCC---------------------------------------------------CCCC
Confidence 5789999999999999987542111 6789
Q ss_pred CcEEEEEeeeCC-------------------ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCC-ChhchHhhcCC
Q psy5567 178 GQHLSLSATIND-------------------EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG-GKMSQFLENMK 237 (314)
Q Consensus 178 GQ~v~l~~~~~~-------------------~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~-G~~S~~L~~l~ 237 (314)
|||++|.++.++ ....|+||+++.+.+.++++|.||.+ ++ |.+|+||++++
T Consensus 30 GQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~~~v~~~---------~~~G~~s~~l~~l~ 100 (235)
T cd06193 30 DQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELDIDFVLH---------GDEGPASRWAASAQ 100 (235)
T ss_pred CceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEEEEEEeC---------CCCCchHHHHhhCC
Confidence 999999987643 46789999999887789999999987 55 99999999999
Q ss_pred CCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 238 VGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 238 ~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+||+|.+.||.|. |.+.+ ..++++||||||||||+++|++++... .+++++|++|
T Consensus 101 ~Gd~v~v~gP~G~--------~~~~~----------~~~~~vlia~GtGi~p~~~il~~~~~~----~~~~~~~~~~ 155 (235)
T cd06193 101 PGDTLGIAGPGGS--------FLPPP----------DADWYLLAGDETALPAIAAILEELPAD----ARGTALIEVP 155 (235)
T ss_pred CCCEEEEECCCCC--------CCCCC----------CcceEEEEeccchHHHHHHHHHhCCCC----CeEEEEEEEC
Confidence 9999999999995 43332 357899999999999999999988653 5899999875
No 51
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=99.89 E-value=3.6e-22 Score=178.09 Aligned_cols=132 Identities=23% Similarity=0.398 Sum_probs=110.1
Q ss_pred EEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCCCC
Q psy5567 99 KEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIG 178 (314)
Q Consensus 99 ~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 178 (314)
++++.+++++++|+|+.+...... .+.||
T Consensus 1 ~~~~~~~~~~~~~~l~~~~~~~~~---------------------------------------------------~~~pG 29 (211)
T cd06185 1 VRIRDEAPDIRSFELEAPDGAPLP---------------------------------------------------AFEPG 29 (211)
T ss_pred CceEEcCCCeEEEEEEeCCCCcCC---------------------------------------------------CCCCC
Confidence 367899999999999987664322 68999
Q ss_pred cEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCC-hhchHhh-cCCCCCeEEEEccccCccccCC
Q psy5567 179 QHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGG-KMSQFLE-NMKVGEPINVSGPRGRLAYLGN 256 (314)
Q Consensus 179 Q~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G-~~S~~L~-~l~~Gd~v~v~GP~G~~~y~~~ 256 (314)
||+.|+++. ...|+||+++.+.+.+.++|+||.+ ++| .+|.||+ .+++||+|.++||.|
T Consensus 30 Q~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~---------~~g~~~s~~l~~~~~~Gd~v~i~gP~g------- 90 (211)
T cd06185 30 AHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLRE---------PASRGGSRYMHELLRVGDELEVSAPRN------- 90 (211)
T ss_pred ceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEec---------cCCCchHHHHHhcCCCCCEEEEcCCcc-------
Confidence 999999853 4579999999988779999999987 444 5899995 689999999999988
Q ss_pred cceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 257 g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+.+ ..++++||||||||||++++++++.+.+ .+++|+|++|
T Consensus 91 -~f~~~~----------~~~~~v~ia~GtGiap~~~il~~~~~~~---~~v~l~~~~r 134 (211)
T cd06185 91 -LFPLDE----------AARRHLLIAGGIGITPILSMARALAARG---ADFELHYAGR 134 (211)
T ss_pred -CCcCCC----------CCCcEEEEeccchHhHHHHHHHHHHhCC---CCEEEEEEeC
Confidence 455543 2578999999999999999999988743 5799999986
No 52
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=99.88 E-value=5.5e-22 Score=178.00 Aligned_cols=111 Identities=25% Similarity=0.437 Sum_probs=97.0
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCcc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLA 252 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~ 252 (314)
.+.||||+.|.++.++....|+||+++.+.+.+.++|+||.. |.+|++|. ++++||.|.++||+|.
T Consensus 22 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~-----------G~~t~~l~~~l~~G~~v~i~gP~G~-- 88 (216)
T cd06198 22 GHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL-----------GDYTRRLAERLKPGTRVTVEGPYGR-- 88 (216)
T ss_pred CcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeC-----------ChHHHHHHHhCCCCCEEEEECCCCC--
Confidence 689999999999765566789999999988878999999964 88999997 9999999999999994
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.++. ..++++||||||||||++++++++..++. ..+++|+|++|
T Consensus 89 ------~~~~~----------~~~~~vlia~GtGiap~~~~l~~~~~~~~-~~~v~l~~~~r 133 (216)
T cd06198 89 ------FTFDD----------RRARQIWIAGGIGITPFLALLEALAARGD-ARPVTLFYCVR 133 (216)
T ss_pred ------Ccccc----------cCceEEEEccccCHHHHHHHHHHHHhcCC-CceEEEEEEEC
Confidence 55443 26899999999999999999999987653 57899999986
No 53
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=99.88 E-value=7.5e-22 Score=185.79 Aligned_cols=132 Identities=23% Similarity=0.377 Sum_probs=110.9
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|+++++++++++.|+|+.|+.. . .+
T Consensus 2 ~~I~~~~~~t~~~~~l~l~~~~~~--~---------------------------------------------------~~ 28 (281)
T PRK06222 2 YKILEKEELAPNVFLMEIEAPRVA--K---------------------------------------------------KA 28 (281)
T ss_pred cEEEEEEEecCCEEEEEEeCchhh--c---------------------------------------------------cC
Confidence 579999999999999999876421 1 57
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccCcccc
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGRLAYL 254 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~y~ 254 (314)
+||||++|+++..+ ..|+||+++.+.+++.++|+||.. |.+|++|+++++||.| .++||+|++
T Consensus 29 ~pGQfv~l~~~~~~--~~rpySias~~~~~~~i~l~vk~~-----------G~~T~~L~~l~~Gd~v~~i~GP~G~~--- 92 (281)
T PRK06222 29 KPGQFVIVRIDEKG--ERIPLTIADYDREKGTITIVFQAV-----------GKSTRKLAELKEGDSILDVVGPLGKP--- 92 (281)
T ss_pred CCCeEEEEEeCCCC--CceeeEeeEEcCCCCEEEEEEEeC-----------CcHHHHHhcCCCCCEEeeEEcCCCCC---
Confidence 89999999985333 468999999887779999999964 9999999999999999 799999962
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+ + ..++++|||||+||||++++++++.+++ .+++|+|++|
T Consensus 93 ----~~~-~----------~~~~~llIaGGiGiaPl~~l~~~l~~~~---~~v~l~~g~r 134 (281)
T PRK06222 93 ----SEI-E----------KFGTVVCVGGGVGIAPVYPIAKALKEAG---NKVITIIGAR 134 (281)
T ss_pred ----ccc-C----------CCCeEEEEeCcCcHHHHHHHHHHHHHCC---CeEEEEEecC
Confidence 322 1 2478999999999999999999988765 3799999986
No 54
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=99.88 E-value=7.1e-22 Score=182.24 Aligned_cols=132 Identities=23% Similarity=0.384 Sum_probs=110.7
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|++++++++|++.|+|+.|+.. . .+
T Consensus 1 ~~v~~~~~~t~d~~~~~l~~~~~~--~---------------------------------------------------~~ 27 (248)
T cd06219 1 YKILEKEELAPNVKLFEIEAPLIA--K---------------------------------------------------KA 27 (248)
T ss_pred CEEEEEEEeCCCeEEEEEEChhhh--c---------------------------------------------------cC
Confidence 478999999999999999976421 1 67
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccCcccc
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGRLAYL 254 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~y~ 254 (314)
+||||++|+++..+ ..|+||+++.+.+.++++|+||.. |.+|.+|.++++||.+ .++||+|.
T Consensus 28 ~pGQf~~l~~~~~~--~~~pySi~s~~~~~~~~~~~vk~~-----------G~~t~~l~~l~~G~~v~~i~gP~G~---- 90 (248)
T cd06219 28 KPGQFVIVRADEKG--ERIPLTIADWDPEKGTITIVVQVV-----------GKSTRELATLEEGDKIHDVVGPLGK---- 90 (248)
T ss_pred CCCcEEEEEcCCCC--CccceEeEEEcCCCCEEEEEEEeC-----------CchHHHHHhcCCCCEeeeeecCCCC----
Confidence 99999999985333 468999999887778999999963 8899999999999999 79999995
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|...+ ..++++|||||||||||+++++++.+.+ .+++|+|++|
T Consensus 91 ----~~~~~----------~~~~~lliagG~GiaP~~~~l~~~~~~~---~~v~l~~~~r 133 (248)
T cd06219 91 ----PSEIE----------NYGTVVFVGGGVGIAPIYPIAKALKEAG---NRVITIIGAR 133 (248)
T ss_pred ----CeecC----------CCCeEEEEeCcccHHHHHHHHHHHHHcC---CeEEEEEEcC
Confidence 32222 2578999999999999999999988764 4799999986
No 55
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=99.88 E-value=1.2e-21 Score=182.49 Aligned_cols=133 Identities=24% Similarity=0.409 Sum_probs=110.7
Q ss_pred EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567 94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL 173 (314)
Q Consensus 94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (314)
..++|+++.+++++++.|+|+.+ .
T Consensus 6 ~~~~v~~~~~~t~~~~~~~~~~~-----~--------------------------------------------------- 29 (261)
T TIGR02911 6 FKSEILEIIKHTDIEYTFRMSYD-----G--------------------------------------------------- 29 (261)
T ss_pred ceEEEEEEeeccCCEEEEEcCCC-----C---------------------------------------------------
Confidence 36899999999999999888643 1
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY 253 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y 253 (314)
.+.||||+.|+++..+ .|+||+++. +.+.++|+||.. |.+|.+|+++++||.|.++||+|.
T Consensus 30 ~~~pGQ~v~l~~~~~~---~~pySi~~~--~~~~l~~~Vk~~-----------G~~S~~L~~l~~Gd~v~i~gP~G~--- 90 (261)
T TIGR02911 30 PVKPGQFFEVSLPKYG---EAPISVSGI--GEGYIDLTIRRV-----------GKVTDEVFTLKEGDNLFLRGPYGN--- 90 (261)
T ss_pred CCCCCcEEEEEecCCC---ccceecCCC--CCCeEEEEEEeC-----------chhhHHHHcCCCCCEEEEecCCCC---
Confidence 5789999999986432 489999874 358899999964 999999999999999999999995
Q ss_pred cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+++ ...++++|||||||||||++|+++++++..+.++++|+|++|
T Consensus 91 ----~f~~~~---------~~~~~~llIAgGtGIaP~~sil~~l~~~~~~~~~v~L~~~~r 138 (261)
T TIGR02911 91 ----GFDVDN---------YKHKELVVVAGGTGVAPVKGVVEYFVKNPKEIKSLNLILGFK 138 (261)
T ss_pred ----CcccCc---------cCCceEEEEecccCcHHHHHHHHHHHhCcccCceEEEEEecC
Confidence 255543 235799999999999999999999987654457899999986
No 56
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=99.87 E-value=5.3e-21 Score=187.16 Aligned_cols=160 Identities=20% Similarity=0.225 Sum_probs=120.2
Q ss_pred ccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeec
Q psy5567 85 KTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVV 159 (314)
Q Consensus 85 ~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (314)
..+..|.....+++++.+.++. +++.|+|+.+.. .
T Consensus 82 ~n~~~~~~p~~~~v~~n~~i~~~~~~~~v~~l~l~~~~~---~------------------------------------- 121 (367)
T PLN03115 82 VNKFRPKEPYTGRCLLNTKITGDDAPGETWHMVFSTEGE---I------------------------------------- 121 (367)
T ss_pred eEeeccCCCeEEEEEeecccccCCCCCceEEEEEcCCCC---C-------------------------------------
Confidence 3455567788899999999987 889998875432 2
Q ss_pred cCCCCCCCcccccCCCCCCcEEEEEeee---CCce-eeeeeeeecCCC----CCceEEEEEEEEeecCCCCCCCCChhch
Q psy5567 160 SAPESEPPFHFAWLGLPIGQHLSLSATI---NDEF-VARAYTPVTSDE----HHGYMDLVVKVYFKNVHPKFPDGGKMSQ 231 (314)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~GQ~v~l~~~~---~~~~-~~R~YTp~s~~~----~~g~l~l~VK~~~~~~~~~~~~~G~~S~ 231 (314)
.+.+|||+.|..+. ++.. ..|+||++|.+. +.++++|+||+.....+...+.+|.+|+
T Consensus 122 --------------~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~~~y~~~~g~~~~G~~S~ 187 (367)
T PLN03115 122 --------------PYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVCSN 187 (367)
T ss_pred --------------CcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEEEEeecCCCccCCeehHh
Confidence 68999999998753 2333 479999999873 2578999999742211222335799999
Q ss_pred HhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC-C---CccE
Q psy5567 232 FLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT-D---NTKM 307 (314)
Q Consensus 232 ~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~-~---~~~v 307 (314)
||++|++||.|.++||.|++ |.++. ...++++|||||||||||++|+++++.... + ..++
T Consensus 188 ~L~~Lk~Gd~V~v~GP~G~~-------fllp~---------~~~~~iImIAgGTGIAP~rs~L~~~~~~~~~~~~~~~~v 251 (367)
T PLN03115 188 FLCDLKPGAEVKITGPVGKE-------MLMPK---------DPNATIIMLATGTGIAPFRSFLWKMFFEKHDDYKFNGLA 251 (367)
T ss_pred hHhhCCCcCEEEEEeecCCc-------eeCCc---------CCCCCEEEEeCCeeHHHHHHHHHHHHhhccccccCCCcE
Confidence 99999999999999999962 33322 134689999999999999999998754321 1 3579
Q ss_pred EEEEEeC
Q psy5567 308 SLIFANQ 314 (314)
Q Consensus 308 ~Li~~~r 314 (314)
+|+||+|
T Consensus 252 ~Lf~G~R 258 (367)
T PLN03115 252 WLFLGVP 258 (367)
T ss_pred EEEEccC
Confidence 9999987
No 57
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=99.87 E-value=3.9e-21 Score=175.43 Aligned_cols=123 Identities=22% Similarity=0.415 Sum_probs=105.3
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|++++++|+|++.|+|+.+ . .+
T Consensus 1 ~~v~~~~~~t~~~~~~~l~~~-----~---------------------------------------------------~~ 24 (233)
T cd06220 1 VTIKEVIDETPTVKTFVFDWD-----F---------------------------------------------------DF 24 (233)
T ss_pred CEEEEEEEEcCCEEEEEEecC-----C---------------------------------------------------CC
Confidence 378999999999999999863 1 57
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccC
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 255 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~ 255 (314)
+||||+.|.++.. ..|+||+++.+ +.++|+||.. |.+|+||+++++||.+.++||+|.
T Consensus 25 ~pGQ~v~l~~~~~---~~~~~Si~s~~---~~l~~~v~~~-----------G~~s~~L~~l~~Gd~v~i~gP~G~----- 82 (233)
T cd06220 25 KPGQFVMVWVPGV---DEIPMSLSYID---GPNSITVKKV-----------GEATSALHDLKEGDKLGIRGPYGN----- 82 (233)
T ss_pred CCCceEEEEeCCC---CcceeEEecCC---CeEEEEEEec-----------ChHHHHHHhcCCCCEEEEECcCCC-----
Confidence 8999999998532 24899999987 7899999964 899999999999999999999995
Q ss_pred CcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 256 NGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 256 ~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++ .++++||||||||||+++|++++..+ ++++|+|++|
T Consensus 83 --~f~~~------------~~~~vliAgGtGitP~~sil~~~~~~----~~i~l~~~~r 123 (233)
T cd06220 83 --GFELV------------GGKVLLIGGGIGIAPLAPLAERLKKA----ADVTVLLGAR 123 (233)
T ss_pred --CccCC------------CCeEEEEecCcChHHHHHHHHHHHhc----CCEEEEEecC
Confidence 24332 46899999999999999999999875 5799999986
No 58
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=99.86 E-value=4.7e-21 Score=152.41 Aligned_cols=99 Identities=33% Similarity=0.718 Sum_probs=89.4
Q ss_pred EEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCC
Q psy5567 95 PLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLG 174 (314)
Q Consensus 95 ~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (314)
+++|+++++++++++.|+|+++++.... .
T Consensus 1 ~~~v~~~~~~s~~~~~~~~~~~~~~~~~---------------------------------------------------~ 29 (99)
T PF00970_consen 1 KAKVVEIEELSPDVKIFRFKLPDPDQKL---------------------------------------------------D 29 (99)
T ss_dssp EEEEEEEEEESSSEEEEEEEESSTTTT----------------------------------------------------S
T ss_pred CEEEEEEEEeCCCeEEEEEEECCCCccc---------------------------------------------------c
Confidence 5899999999999999999998765333 7
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccc
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAY 253 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y 253 (314)
+.||||+.|+++.++....|+|||++.+.+.+.++|+||++ ++|.+|+||++|++||.|.++||+|+|.|
T Consensus 30 ~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~---------~~G~~S~~L~~l~~Gd~v~i~gP~G~f~y 99 (99)
T PF00970_consen 30 FKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRY---------PNGRVSRYLHQLKPGDEVEIRGPYGNFTY 99 (99)
T ss_dssp STTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEEC---------TTSHHHHHHHTSCTTSEEEEEEEESSEEE
T ss_pred cCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEec---------cCCHHHHHHHhCCCCCEEEEEEcccccCC
Confidence 89999999999988888999999999999999999999998 89999999999999999999999997655
No 59
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=99.86 E-value=5.2e-21 Score=179.14 Aligned_cols=122 Identities=21% Similarity=0.319 Sum_probs=97.2
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecC-CCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPINVSGPRGRL 251 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~ 251 (314)
.+.||||+.|.++ +....|+||+++.+++ .+.++|.||....+. |++. ..|.+|++|+++++||.|.++||.|.
T Consensus 31 ~~~pGQ~v~l~~~--~~~~~R~ySias~p~~~~~~l~l~Ik~~~~~~~~~~~-~~G~~S~~L~~lk~Gd~v~v~~p~G~- 106 (267)
T cd06182 31 KYQPGDHLGVIPP--NPLQPRYYSIASSPDVDPGEVHLCVRVVSYEAPAGRI-RKGVCSNFLAGLQLGAKVTVFIRPAP- 106 (267)
T ss_pred ccCCCCEEEEecC--CCCCCeeEeecCCCCCCCCEEEEEEEEEEEecCCCCe-eccchhHHHhhCCCCCEEEEEEecCC-
Confidence 6899999999974 4556899999999864 689999999862111 1222 34999999999999999999999993
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC---CCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~---~~~~~~v~Li~~~r 314 (314)
.|.++. ...++++|||||||||||++|+++++.. ..+..+++|+|++|
T Consensus 107 ------~f~l~~---------~~~~~~vlIAgGtGIaP~~s~l~~~~~~~~~~~~~~~v~l~~g~r 157 (267)
T cd06182 107 ------SFRLPK---------DPTTPIIMVGPGTGIAPFRGFLQERAALRANGKARGPAWLFFGCR 157 (267)
T ss_pred ------cccCCC---------CCCCCEEEEecCccHHHHHHHHHHHHHhhhccccCCCEEEEEeCC
Confidence 455544 1357899999999999999999999872 22357899999986
No 60
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=99.85 E-value=1.5e-20 Score=173.38 Aligned_cols=115 Identities=17% Similarity=0.290 Sum_probs=91.0
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCcc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRLA 252 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~~ 252 (314)
.|.||||++|..+ +....|+||++|.+. .+.++|+||.+.. ++ ...|.+|+||++ +++||.|.++||.|.
T Consensus 31 ~f~pGQ~v~l~~~--~~~~~R~YSIas~p~-~~~l~l~Vk~~~~---~~-~~~G~~S~~L~~~~~~Gd~v~i~gp~gg-- 101 (245)
T cd06200 31 QWQAGDIAEIGPR--HPLPHREYSIASLPA-DGALELLVRQVRH---AD-GGLGLGSGWLTRHAPIGASVALRLRENP-- 101 (245)
T ss_pred CccCCcEEEecCC--CCCCCcceEeccCCC-CCEEEEEEEEecc---CC-CCCeeechhhhhCCCCCCEEEEEecCCC--
Confidence 6899999999974 235679999999985 4789999998710 00 011889999965 699999999998763
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ..++++|||||||||||++|++++..++ ..+++|+|++|
T Consensus 102 -----~F~~~~----------~~~~~vlIAgGtGIaP~~s~l~~~~~~~--~~~~~l~~g~r 146 (245)
T cd06200 102 -----GFHLPD----------DGRPLILIGNGTGLAGLRSHLRARARAG--RHRNWLLFGER 146 (245)
T ss_pred -----cccCCC----------CCCCEEEEecCcChHHHHHHHHHHHhcc--CCCeEEEEecC
Confidence 565533 3478999999999999999999998765 35799999986
No 61
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=99.83 E-value=7.1e-20 Score=163.18 Aligned_cols=114 Identities=22% Similarity=0.382 Sum_probs=94.6
Q ss_pred CCCCCcEEEEEeeeC-CceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCC------CCCeEEEE
Q psy5567 174 GLPIGQHLSLSATIN-DEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK------VGEPINVS 245 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~-~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~------~Gd~v~v~ 245 (314)
.+.||||+.|.++.. +....|+||+++.+.+ .+.++|+||.. +|..++.+..++ .|+.+.+.
T Consensus 24 ~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~----------~G~~t~~~~~~~~~~~~~~~~~v~v~ 93 (210)
T cd06186 24 KWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAK----------KGFTTRLLRKALKSPGGGVSLKVLVE 93 (210)
T ss_pred ccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEec----------CChHHHHHHHHHhCcCCCceeEEEEE
Confidence 678999999999765 5567899999999876 68999999975 488888878776 89999999
Q ss_pred ccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC---CCccEEEEEEeC
Q psy5567 246 GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT---DNTKMSLIFANQ 314 (314)
Q Consensus 246 GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~---~~~~v~Li~~~r 314 (314)
||+|. +.... ..+++++||||||||||++++++++..+.. ...+++|+|++|
T Consensus 94 GP~G~--------~~~~~---------~~~~~~vliagG~GItp~~s~l~~l~~~~~~~~~~~~v~l~w~~r 148 (210)
T cd06186 94 GPYGS--------SSEDL---------LSYDNVLLVAGGSGITFVLPILRDLLRRSSKTSRTRRVKLVWVVR 148 (210)
T ss_pred CCCCC--------CccCh---------hhCCeEEEEeccccHhhhHHHHHHHHhhhhccCCccEEEEEEEEC
Confidence 99995 32111 247899999999999999999999987642 357899999987
No 62
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.81 E-value=4e-19 Score=187.49 Aligned_cols=132 Identities=22% Similarity=0.315 Sum_probs=112.0
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|+++++++++++.|+|+.|... . .+
T Consensus 2 ~~I~~~~~~t~~v~~l~l~~p~~~--~---------------------------------------------------~~ 28 (752)
T PRK12778 2 NKIVEKEIFSEKVFLLEIEAPLIA--K---------------------------------------------------SR 28 (752)
T ss_pred CEEEEEEEEcCCEEEEEEeCCchh--c---------------------------------------------------cC
Confidence 579999999999999999876321 1 57
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccCcccc
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGRLAYL 254 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~~~y~ 254 (314)
+||||++|+++..+ ..|+||+++.+.+.+.++|+||.. |.+|++|+++++||.| .++||+|++
T Consensus 29 ~pGQFv~l~~~~~~--~~rp~Si~~~~~~~g~i~~~vk~v-----------G~~T~~L~~l~~Gd~v~~v~GP~G~~--- 92 (752)
T PRK12778 29 KPGQFVIVRVGEKG--ERIPLTIADADPEKGTITLVIQEV-----------GLSTTKLCELNEGDYITDVVGPLGNP--- 92 (752)
T ss_pred CCCeeEEEEeCCCC--CeeEEEeeeeCCCCCEEEEEEEEc-----------CchHHHHhcCCCCCEeCeEeCCCCCC---
Confidence 89999999986433 468999999988889999999975 9999999999999999 899999963
Q ss_pred CCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 255 GNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 255 ~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+ + ..++++|||||+|||||+++++++.+++ .+++|+|++|
T Consensus 93 ----~~~-~----------~~~~~llvaGG~GiaPl~~l~~~l~~~~---~~v~l~~g~r 134 (752)
T PRK12778 93 ----SEI-E----------NYGTVVCAGGGVGVAPMLPIVKALKAAG---NRVITILGGR 134 (752)
T ss_pred ----ccC-C----------CCCeEEEEECCEeHHHHHHHHHHHHHCC---CeEEEEeccC
Confidence 222 2 2468999999999999999999998875 3799999986
No 63
>PLN02292 ferric-chelate reductase
Probab=99.77 E-value=8.2e-18 Score=176.04 Aligned_cols=139 Identities=22% Similarity=0.324 Sum_probs=112.5
Q ss_pred EEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccC
Q psy5567 94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWL 173 (314)
Q Consensus 94 ~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (314)
..+++.+++.+++++.+++|+.++. .
T Consensus 325 ~~~~Iv~~~~l~~dvv~L~~~~~~~---~--------------------------------------------------- 350 (702)
T PLN02292 325 NNVKLVSARVLPCDTVELNFSKNPM---L--------------------------------------------------- 350 (702)
T ss_pred cceEEEEEEEcCCCEEEEEEEcCCC---C---------------------------------------------------
Confidence 4678999999999999999986642 1
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCe-----EEEEc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEP-----INVSG 246 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~-----v~v~G 246 (314)
.+.||||+.+.++..+....||||+++.+. ++++++|+||.+ |.+|++| +.++.||. +.++|
T Consensus 351 ~~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~-----------G~~T~~L~~~l~~gd~i~~~~V~VeG 419 (702)
T PLN02292 351 MYSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQ-----------GKWSTKLYHMLSSSDQIDRLAVSVEG 419 (702)
T ss_pred CcCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcC-----------CchhHHHHHhCCCCCccccceEEEEC
Confidence 678999999999765566789999999874 568899999964 8899999 56789984 57999
Q ss_pred cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----CccEEEEEEeC
Q psy5567 247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQ 314 (314)
Q Consensus 247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~~v~Li~~~r 314 (314)
|+|. +..+. ..+++++|||||+||||++++++++.++..+ .++++|+|++|
T Consensus 420 PYG~--------~~~~~---------~~~~~vvlIAGGiGITP~lsil~~L~~~~~~~~~~~~~V~LIw~vR 474 (702)
T PLN02292 420 PYGP--------ASTDF---------LRHESLVMVSGGSGITPFISIIRDLIYTSSTETCKIPKITLICAFK 474 (702)
T ss_pred CccC--------Ccccc---------ccCCcEEEEEeccCHHHHHHHHHHHHhccccccCCCCcEEEEEEEC
Confidence 9994 22111 2357999999999999999999999876432 26899999987
No 64
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.77 E-value=8.9e-18 Score=181.30 Aligned_cols=139 Identities=21% Similarity=0.319 Sum_probs=115.3
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
.+.+++|++++.++++++.|+|+.|... .
T Consensus 647 ~~~~~~I~~~~~lt~dv~~~~l~~p~~~--~------------------------------------------------- 675 (944)
T PRK12779 647 GQIPQTIVGKVQLAGGIVEFTVRAPMVA--R------------------------------------------------- 675 (944)
T ss_pred cceEEEEEEEEEecCCEEEEEEeCCCcc--c-------------------------------------------------
Confidence 4789999999999999999999876431 1
Q ss_pred cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeE-EEEccccC
Q psy5567 172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPI-NVSGPRGR 250 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v-~v~GP~G~ 250 (314)
.+.||||++|....++ ..|+||+++.+.+.+.++|+||.+ |.+|.+|+++++||.| .++||.|+
T Consensus 676 --~~~PGQFv~L~~~~~g--e~rP~SIas~~~~~g~i~l~Vk~v-----------G~~T~~L~~lk~Gd~l~~I~GPlG~ 740 (944)
T PRK12779 676 --SAQAGQFVRVLPWEKG--ELIPLTLADWDAEKGTIDLVVQGM-----------GTSSLEINRMAIGDAFSGIAGPLGR 740 (944)
T ss_pred --cCCCCceEEEEeCCCC--CEEeEEccCCCCCCCEEEEEEEee-----------ccHHHHHhcCCCcCEEeeeecCCCC
Confidence 6789999999975444 358999999887789999999975 8899999999999999 59999996
Q ss_pred ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+ |.++. ....++++|||||+||||+++|++++.+.+ .+++|+|++|
T Consensus 741 ~-------f~~~~--------~~~~~~vllIAGGiGIAPl~sl~r~l~~~g---~~V~li~G~R 786 (944)
T PRK12779 741 A-------SELHR--------YEGNQTVVFCAGGVGLPPVYPIMRAHLRLG---NHVTLISGFR 786 (944)
T ss_pred C-------cCCcc--------ccCCCcEEEEEccEeHHHHHHHHHHHHHCC---CCEEEEEEeC
Confidence 2 33322 012368999999999999999999998765 4799999987
No 65
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.75 E-value=2.1e-17 Score=179.52 Aligned_cols=132 Identities=20% Similarity=0.347 Sum_probs=111.1
Q ss_pred EEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCC
Q psy5567 96 LKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGL 175 (314)
Q Consensus 96 ~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (314)
++|+++++++++++.|+|+.|+.. . .+
T Consensus 2 ~~I~~~~~l~~~~~~l~l~ap~~a--~---------------------------------------------------~~ 28 (1006)
T PRK12775 2 YSIVRREAFSDTTFLWEVEAPDVA--A---------------------------------------------------SA 28 (1006)
T ss_pred cEEEEEEEecCCEEEEEEecCCcc--c---------------------------------------------------CC
Confidence 579999999999999999877642 1 67
Q ss_pred CCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeE-EEEccccCccc
Q psy5567 176 PIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPI-NVSGPRGRLAY 253 (314)
Q Consensus 176 ~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v-~v~GP~G~~~y 253 (314)
.||||++|+++..+ ..|+||+++.+.+.|+++|+||.. |.+|+|| .++++||.| .+.||+|.
T Consensus 29 ~PGQFV~l~~~~~~--errplSIa~~~~~~g~i~l~vk~v-----------G~~T~~L~~~lk~Gd~l~~v~GPlG~--- 92 (1006)
T PRK12775 29 EPGHFVMLRLYEGA--ERIPLTVADFDRKKGTITMVVQAL-----------GKTTREMMTKFKAGDTFEDFVGPLGL--- 92 (1006)
T ss_pred CCCeeEEEEeCCCC--eeEEEEecCcCCCCCEEEEEEEec-----------CcHHHHHHhcCCCCCEEeeeecCCCC---
Confidence 99999999985333 468999998887789999999964 9999999 699999999 89999995
Q ss_pred cCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 254 LGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 254 ~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+. ..++++|||||+||||+++|++++.+.+ .+++++|++|
T Consensus 93 ----~~~~~-----------~~~~vllVaGGiGIAPl~s~~r~l~~~g---~~v~li~g~R 135 (1006)
T PRK12775 93 ----PQHID-----------KAGHVVLVGGGLGVAPVYPQLRAFKEAG---ARTTGIIGFR 135 (1006)
T ss_pred ----CCCCC-----------CCCeEEEEEEhHHHHHHHHHHHHHHhCC---CcEEEEEeCC
Confidence 22222 2468999999999999999999988775 4699999986
No 66
>PLN02631 ferric-chelate reductase
Probab=99.72 E-value=1.5e-16 Score=166.50 Aligned_cols=113 Identities=18% Similarity=0.322 Sum_probs=90.0
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCC-CC--eEEEEccc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKV-GE--PINVSGPR 248 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~-Gd--~v~v~GP~ 248 (314)
.+.||||+.+.++..+...+||||+++.++ +++.++|+||. .|.+|++| +.++. |+ ++.+.||+
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~-----------~Gg~T~~L~~~l~~~g~~i~V~VeGPY 402 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR-----------QGSWTQKLYTHLSSSIDSLEVSTEGPY 402 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc-----------CChHHHHHHHhhhcCCCeeEEEEECCC
Confidence 678999999999876667789999999874 46889999995 49999999 44654 45 67888999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----CccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~~v~Li~~~r 314 (314)
|. +..+. ..+++++|||||+||||+++++++++.+..+ .++++|+|++|
T Consensus 403 G~--------~~~~~---------~~~~~vVlIAGGsGITP~lSiL~~ll~~~~~~~~~~~~V~Li~~vR 455 (699)
T PLN02631 403 GP--------NSFDV---------SRHNSLILVSGGSGITPFISVIRELIFQSQNPSTKLPDVLLVCSFK 455 (699)
T ss_pred CC--------CCCCc---------CCCCcEEEEEeCcChHhHHHHHHHHHhcccccccCCCcEEEEEEEC
Confidence 94 22221 2467899999999999999999999865321 24799999987
No 67
>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]
Probab=99.71 E-value=4.3e-17 Score=157.88 Aligned_cols=138 Identities=24% Similarity=0.419 Sum_probs=112.4
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
..+..+++..+..++++.+++..+..+
T Consensus 214 ~~y~~~vt~~~r~~~~t~eit~~l~~~----------------------------------------------------- 240 (438)
T COG4097 214 FPYLGKVTAPQRGNVDTLEITIGLQGP----------------------------------------------------- 240 (438)
T ss_pred cccceEEechhhcCcchheeecccCCc-----------------------------------------------------
Confidence 356788999999999977776665432
Q ss_pred cCCCCCCcEEEEEeeeCC-ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEcccc
Q psy5567 172 WLGLPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRG 249 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~-~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G 249 (314)
| .+++|||..+++++.+ ....+|||++++.... +++|.||.- |..|+-| ++|++|+.+++.||+|
T Consensus 241 ~-~~qaGQFAfLk~~~~~~~~~~HPFTIa~s~~~s-el~FsIK~L-----------GD~Tk~l~dnLk~G~k~~vdGPYG 307 (438)
T COG4097 241 W-LYQAGQFAFLKIEIEEFRMRPHPFTIACSHEGS-ELRFSIKAL-----------GDFTKTLKDNLKVGTKLEVDGPYG 307 (438)
T ss_pred c-cccCCceEEEEeccccccCCCCCeeeeeCCCCc-eEEEEehhh-----------hhhhHHHHHhccCCceEEEecCcc
Confidence 2 3799999999997633 4567999999887664 899999964 9999999 6799999999999999
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+|.|+ . .-.+-|+||||+||||++++++.+.... +...|+|+|+.|
T Consensus 308 ~F~~~--------~----------g~~~QVWIAGGIGITPFis~l~~l~~~~-s~~~V~L~Y~~~ 353 (438)
T COG4097 308 KFDFE--------R----------GLNTQVWIAGGIGITPFISMLFTLAERK-SDPPVHLFYCSR 353 (438)
T ss_pred eeecc--------c----------CCcccEEEecCcCcchHHHHHHhhcccc-cCCceEEEEEec
Confidence 75554 3 2334899999999999999999988844 467999999976
No 68
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=99.65 E-value=5.4e-15 Score=155.42 Aligned_cols=113 Identities=20% Similarity=0.415 Sum_probs=87.4
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHh-h----cCCCC------Ce
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-E----NMKVG------EP 241 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~----~l~~G------d~ 241 (314)
.+.||||+++.++..+...+||||++|.+. +++.++|.||.. |..|+.| + .+++| .+
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~-----------gG~T~~L~~~i~~~l~~g~~~~~~~~ 406 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE-----------GGWTNSLYNKIQAELDSETNQMNCIP 406 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC-----------CCchHHHHHHHHhhccCCCCcccceE
Confidence 689999999999876667889999999763 567899999964 5555555 2 23445 37
Q ss_pred EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----CccEEEEEEeC
Q psy5567 242 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NTKMSLIFANQ 314 (314)
Q Consensus 242 v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~~v~Li~~~r 314 (314)
+.++||+|. +..+. ..+++++|||||+||||++++++++..++.. ..+++|+|++|
T Consensus 407 v~VeGPYG~--------~s~~~---------~~~~~lVLIAGGiGITPfLSiLrdl~~~~~~~~~~~~~V~LIw~vR 466 (722)
T PLN02844 407 VAIEGPYGP--------ASVDF---------LRYDSLLLVAGGIGITPFLSILKEIASQSSSRYRFPKRVQLIYVVK 466 (722)
T ss_pred EEEECCccC--------CCCCc---------cCCCeEEEEEcCcCHHHHHHHHHHHHhccccccCCCCcEEEEEEEC
Confidence 899999994 33222 2468999999999999999999999864321 25899999987
No 69
>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe
Probab=99.61 E-value=3e-15 Score=146.76 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=85.7
Q ss_pred eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCC
Q psy5567 191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDP 269 (314)
Q Consensus 191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~ 269 (314)
...|+||++|++.. .+.++|+||++......+....|.+|+||+++++||.|.+.||.| .|.++.
T Consensus 162 l~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~p~g--------~F~lp~------ 227 (382)
T cd06207 162 IKPRYYSISSSPLKNPNEVHLLVSLVSWKTPSGRSRYGLCSSYLAGLKVGQRVTVFIKKS--------SFKLPK------ 227 (382)
T ss_pred CCCceeeecCCCcCCCCeEEEEEEEEEeeCCCCCeecccHHHHHhhcCCCCEEEEEEECC--------cccCCC------
Confidence 46799999999864 689999999874332223335799999999999999999999999 466654
Q ss_pred CCCCCCCeEEEEEcCcCHHHHHHHHHHHhh---CCCCCccEEEEEEeC
Q psy5567 270 PTNLKVTQLSMIAGGTGITPMLQLVRHITK---DPTDNTKMSLIFANQ 314 (314)
Q Consensus 270 ~~~~~~~~vvmIAgGtGItP~l~li~~l~~---~~~~~~~v~Li~~~r 314 (314)
...++++|||||||||||++++++... ++....++.|+||+|
T Consensus 228 ---~~~~plImIa~GtGIAP~rs~l~~~~~~~~~~~~~~~~~L~~G~R 272 (382)
T cd06207 228 ---DPKKPIIMVGPGTGLAPFRAFLQERAALLAQGPEIGPVLLYFGCR 272 (382)
T ss_pred ---CCCCCEEEEcCCccHHHHHHHHHHHHHHhhcCccCCCEEEEECCC
Confidence 235789999999999999999998653 222357899999987
No 70
>cd06199 SiR Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.
Probab=99.60 E-value=1.9e-15 Score=147.29 Aligned_cols=119 Identities=23% Similarity=0.301 Sum_probs=92.6
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcC-CCCCeEEEEccccCc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENM-KVGEPINVSGPRGRL 251 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l-~~Gd~v~v~GP~G~~ 251 (314)
.+++||++.+..+ ...|+||++|+|.. .+.++|+|++.......+ .+.|.+|+||+++ ++||.|.+.+|.|.
T Consensus 131 ~~~~gq~l~l~~~----~~~R~YSIaSsp~~~~~~i~l~v~~v~~~~~~~-~~~G~~S~~L~~~~~~Gd~v~v~~~~~~- 204 (360)
T cd06199 131 RLTAEELLDLLRP----LQPRLYSIASSPKAVPDEVHLTVAVVRYESHGR-ERKGVASTFLADRLKEGDTVPVFVQPNP- 204 (360)
T ss_pred CCCHHHHHHhCcC----CCCcceeeccCcccCCCeEEEEEEEeeecCCCC-ccceehhHHHHhcCCCCCEEEEEEecCC-
Confidence 6789999998753 25699999999864 578999998752111111 2579999999775 69999999986652
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ....+++|||+|||||||++|+++...... ..++.|+||+|
T Consensus 205 ------~F~lp~---------~~~~piImIa~GtGIAP~~s~l~~~~~~~~-~~~~~L~~G~R 251 (360)
T cd06199 205 ------HFRLPE---------DPDAPIIMVGPGTGIAPFRAFLQEREATGA-KGKNWLFFGER 251 (360)
T ss_pred ------CcCCCC---------CCCCCEEEEecCcChHHHHHHHHHHHhccC-CCcEEEEEcCC
Confidence 577754 235789999999999999999998876543 46899999987
No 71
>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component. This model describes an NADPH-dependent sulfite reductase flavoprotein subunit. Most members of this family are found in Cys biosynthesis gene clusters. The closest homologs below the trusted cutoff are designated as subunits nitrate reductase.
Probab=99.60 E-value=1.6e-15 Score=156.86 Aligned_cols=119 Identities=26% Similarity=0.335 Sum_probs=95.3
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRL 251 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~ 251 (314)
.+.+||++.+..+ ...|+||++|++. ..++++|+|+++....+.+ .+.|.+|+||.+ +++||+|.+.+|.|.
T Consensus 368 ~~~~gq~v~ll~~----~~~R~YSIaSsp~~~~~~l~ltV~~v~~~~~~~-~~~G~~S~~L~~~l~~Gd~v~v~~~~~~- 441 (597)
T TIGR01931 368 DLDAEQLISLLRP----LTPRLYSISSSQSEVGDEVHLTVGVVRYQAHGR-ARLGGASGFLAERLKEGDTVPVYIEPND- 441 (597)
T ss_pred CCCHHHHHHhCcc----cCCceeeeccCcccCCCEEEEEEEEEEecCCCC-ccccchhHHHHhhCCCCCEEEEEEeeCC-
Confidence 7899999998864 2579999999986 3678999998753222222 257999999976 999999999987652
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ...++++|||+|||||||++|++++...+. ..+++|+||+|
T Consensus 442 ------~F~lp~---------~~~~piImIg~GTGIAPfrsflq~r~~~~~-~g~~~LffG~R 488 (597)
T TIGR01931 442 ------NFRLPE---------DPDTPIIMIGPGTGVAPFRAFMQERAEDGA-KGKNWLFFGNP 488 (597)
T ss_pred ------cccCCC---------CCCCCEEEEcCCcCchhHHHHHHHHHHccC-CCCEEEEECCC
Confidence 677765 235789999999999999999999877653 46899999987
No 72
>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR). NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la
Probab=99.59 E-value=1.9e-15 Score=148.26 Aligned_cols=120 Identities=23% Similarity=0.302 Sum_probs=90.4
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCC-CCCCCCChhchHhhcCCCCCeEEE--Ecccc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVH-PKFPDGGKMSQFLENMKVGEPINV--SGPRG 249 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~-~~~~~~G~~S~~L~~l~~Gd~v~v--~GP~G 249 (314)
..+.||++.+.. . ...|+||++|++.. .+.++|+|++.....+ .+....|.+|+||+++++||.|.+ +||.|
T Consensus 146 ~~~~~~~l~~~p---~-l~~R~YSIaSsp~~~~~~i~l~v~v~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~i~~p~g 221 (384)
T cd06206 146 ALPLATFLAMLP---P-MRPRQYSISSSPLVDPGHATLTVSVLDAPALSGQGRYRGVASSYLSSLRPGDSIHVSVRPSHS 221 (384)
T ss_pred CCCHHHHHHhCc---c-cCCcceeeccCccCCCCeEEEEEEEEEeecCCCCceeeeehHHHHhhCCCCCeEEEEEecCCC
Confidence 567799888763 2 25699999999854 5778888887632211 112247999999999999999985 58888
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC---CCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~---~~~~~~v~Li~~~r 314 (314)
.|.++. ...++++|||||||||||++|+++.... +.+..+++|+||+|
T Consensus 222 --------~F~l~~---------~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R 272 (384)
T cd06206 222 --------AFRPPS---------DPSTPLIMIAAGTGLAPFRGFLQERAALLAQGRKLAPALLFFGCR 272 (384)
T ss_pred --------ccCCCC---------CCCCCEEEEeCCCCcHHHHHHHHHHHHHHhcCCCcCCEEEEEeCC
Confidence 466544 2357899999999999999999987542 33346899999987
No 73
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=99.58 E-value=3.1e-15 Score=141.13 Aligned_cols=175 Identities=22% Similarity=0.364 Sum_probs=123.3
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccC------CCCC
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSA------PESE 165 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 165 (314)
...+++|++......-++++.+.+|+++.+. | +.+-+-+++...- ---+
T Consensus 133 kkWectViSNdN~ATFIKEL~laip~g~~vp------F-------------------raGGyiQie~pph~v~y~Dfdi~ 187 (410)
T COG2871 133 KKWECTVISNDNKATFIKELKLAIPEGEEVP------F-------------------RAGGYIQIEAPPHTVNYKDFDIP 187 (410)
T ss_pred cceeEEEEeCCchhhhhhhheeeCCCCCccc------c-------------------CCCceEEEecCCccccccccCCC
Confidence 3456888888888878889999998886542 2 2222221111000 0001
Q ss_pred CCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecC-CCCCCCCChhchHhhcCCCCCeEEE
Q psy5567 166 PPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPINV 244 (314)
Q Consensus 166 ~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~~l~~Gd~v~v 244 (314)
|.++=-|..|.-=+++.- .++.+.|+||.+|-|++.|.+.|-||+..++- ++.. +-|.||.|+.+|++||.|.+
T Consensus 188 ~eY~~DWdkf~lf~~vs~----v~e~~~rAYSmAsYPeE~giI~~NvRIAtPPp~~~~~-PpG~mSSyi~sLKpGDKvti 262 (410)
T COG2871 188 PEYHEDWDKFNLFRYVSK----VDEPIIRAYSMASYPEEKGIIKLNVRIATPPPRNPDA-PPGQMSSYIWSLKPGDKVTI 262 (410)
T ss_pred hhHhcchhhhchheeecc----ccHHHHHHhhhhcChhhcCeEEEEEEeccCCCCCCCC-CccceeeeEEeecCCCeEEE
Confidence 122222333332222221 24567899999999999999999999986653 3333 45999999999999999999
Q ss_pred EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+||+|+ |..+. ....++||+||.|.+||.+-|-.++.+-..++++++.||+|
T Consensus 263 sGPfGE--------fFaKd----------tdaemvFigGGAGmapmRSHIfDqL~rlhSkRkis~WYGAR 314 (410)
T COG2871 263 SGPFGE--------FFAKD----------TDAEMVFIGGGAGMAPMRSHIFDQLKRLHSKRKISFWYGAR 314 (410)
T ss_pred eccchh--------hhhcc----------CCCceEEEecCcCcCchHHHHHHHHHhhcccceeeeeeccc
Confidence 999994 55544 46889999999999999999988887766689999999987
No 74
>PRK10953 cysJ sulfite reductase subunit alpha; Provisional
Probab=99.51 E-value=4e-14 Score=146.65 Aligned_cols=119 Identities=24% Similarity=0.300 Sum_probs=94.0
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRL 251 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~ 251 (314)
.+.+||++.+..+ ...|+||++|++. ..++++|+|++.....+. ....|.+|.||. .+++||.|.+.+|.|.
T Consensus 371 ~~~~~q~l~ll~~----l~pR~YSIaSsp~~~~~~v~ltv~~v~~~~~g-~~~~G~~S~~L~~~l~~Gd~v~v~~~~~~- 444 (600)
T PRK10953 371 QLDAEQLIGLLRP----LTPRLYSIASSQAEVENEVHITVGVVRYDIEG-RARAGGASSFLADRLEEEGEVRVFIEHND- 444 (600)
T ss_pred CCCHHHHHHhCCC----CCCeeeecccCCCCCCCeEEEEEEEEEeecCC-CCcCceEhhhhhhcCCCCCEEEEEeccCC-
Confidence 6789999988764 2479999999985 457889988664222222 235799999995 6999999999998863
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ....+++|||+|||||||++++++....+. ..+++|+||+|
T Consensus 445 ------~F~lp~---------~~~~piImIg~GTGIAPfrsflq~r~~~~~-~~~~~LffG~R 491 (600)
T PRK10953 445 ------NFRLPA---------NPETPVIMIGPGTGIAPFRAFMQQRAADGA-PGKNWLFFGNP 491 (600)
T ss_pred ------cccCCC---------CCCCCEEEEecCcCcHHHHHHHHHHHHcCC-CCCeEEEeecc
Confidence 687765 245799999999999999999999877653 56899999997
No 75
>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate. In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme
Probab=99.50 E-value=6.4e-14 Score=138.36 Aligned_cols=102 Identities=22% Similarity=0.318 Sum_probs=81.0
Q ss_pred eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCC-----CCCeEEEEc-cccCccccCCcceeecc
Q psy5567 191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK-----VGEPINVSG-PRGRLAYLGNGEFHIRA 263 (314)
Q Consensus 191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~-----~Gd~v~v~G-P~G~~~y~~~g~f~l~~ 263 (314)
...|+||++|++.. .+.++|+|+++.. +..|.+|+||++++ +|+.|.+.+ |.| .|.++.
T Consensus 172 ~~~R~YSIsSsp~~~~~~i~l~v~~v~~------~~~G~~S~~L~~l~~~~~~~G~~v~i~~~~~g--------~F~lp~ 237 (398)
T cd06203 172 LQPRPYSIASSPLEGPGKLRFIFSVVEF------PAKGLCTSWLESLCLSASSHGVKVPFYLRSSS--------RFRLPP 237 (398)
T ss_pred CCCcceeecCCcccCCCeEEEEEEEEEe------cCCChhhHHHHHhhhhhcCCCCEEEEEEecCC--------CcCCCC
Confidence 46799999999865 5899999998711 11599999999988 999999999 455 577654
Q ss_pred cCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC-----CCCCccEEEEEEeC
Q psy5567 264 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-----PTDNTKMSLIFANQ 314 (314)
Q Consensus 264 ~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~-----~~~~~~v~Li~~~r 314 (314)
.....+++|||+|||||||++++++.... +....++.|+||+|
T Consensus 238 --------~~~~~piImIa~GtGIAP~rs~lq~~~~~~~~~~~~~~~~~~Lf~G~R 285 (398)
T cd06203 238 --------DDLRRPIIMVGPGTGVAPFLGFLQHREKLKESHTETVFGEAWLFFGCR 285 (398)
T ss_pred --------cCCCCCEEEEcCCcChHHHHHHHHHHHHHHhhcccCCCCCEEEEEeCC
Confidence 01247899999999999999999987641 22357899999987
No 76
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.49 E-value=5.1e-13 Score=143.67 Aligned_cols=125 Identities=17% Similarity=0.292 Sum_probs=102.7
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
.....+|++++.++++++.++++.|....
T Consensus 789 ~~l~~~Vv~~~~lap~i~~L~l~aP~iA~--------------------------------------------------- 817 (1028)
T PRK06567 789 YLLTSRVNKINILDDKTFELIIHSPLAAK--------------------------------------------------- 817 (1028)
T ss_pred hhhceEEEEEEEecCCEEEEEEeCcchhh---------------------------------------------------
Confidence 45678999999999999999998775321
Q ss_pred cCCCCCCcEEEEEeeeCC--c-eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccc
Q psy5567 172 WLGLPIGQHLSLSATIND--E-FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPR 248 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~--~-~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~ 248 (314)
.+.||||++|+.+..+ . ...|++|+.+.+.+.|.++|++++. |..|+.|+++++||.+.+.||.
T Consensus 818 --~~kPGQFVmL~~~~~g~~~l~~p~P~SI~~vD~e~g~It~i~rvV-----------GkgT~~Ls~l~~Gd~v~v~GPL 884 (1028)
T PRK06567 818 --NFKFGQFFRLQNYSEDAAKLIEPVALSPIDIDVEKGLISFIVFEV-----------GKSTSLCKTLSENEKVVLMGPT 884 (1028)
T ss_pred --cCCCCceEEEEeCCCCCccccCceeEEeeccCCCCCEEEEEEEEE-----------ChHHHHHhcCCCCCEEEEEccc
Confidence 4689999999974322 2 2446899999888889999999987 9999999999999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 301 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~ 301 (314)
|+ .|.++. .+++++||||+|+|| +++++.+.+
T Consensus 885 G~-------pF~i~~-----------~k~vLLVgGGVGiAp---Lak~Lk~~G 916 (1028)
T PRK06567 885 GS-------PLEIPQ-----------NKKIVIVDFEVGNIG---LLKVLKENN 916 (1028)
T ss_pred CC-------CCCCCC-----------CCeEEEEEccccHHH---HHHHHHHCC
Confidence 96 576543 468999999999997 456666554
No 77
>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain. The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.
Probab=99.47 E-value=2.4e-13 Score=134.63 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=80.3
Q ss_pred eeeeeeeecCCCC-CceEEEEEEEEeecCC--CCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCC
Q psy5567 192 VARAYTPVTSDEH-HGYMDLVVKVYFKNVH--PKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268 (314)
Q Consensus 192 ~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~--~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~ 268 (314)
..|+||++|++.. .+.++|+|++...... ......|.+|+||+++++||.|.+.++.+. .|.++.
T Consensus 176 ~pR~YSIsSsp~~~~~~~~l~v~vv~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~~-------~F~lp~----- 243 (406)
T cd06202 176 QPRYYSISSSPDMYPGEIHLTVAVVSYRTRDGQGPVHHGVCSTWLNGLTPGDTVPCFVRSAP-------SFHLPE----- 243 (406)
T ss_pred CCcccccCCCccCCCCeEEEEEEEEEEECCCCCCCcccccHHHHHHhCCCCCEEEEEEeeCC-------ccCCCC-----
Confidence 5799999999863 6778888877521110 111246999999999999999999876542 477654
Q ss_pred CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh-------CCCCCccEEEEEEeC
Q psy5567 269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITK-------DPTDNTKMSLIFANQ 314 (314)
Q Consensus 269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~-------~~~~~~~v~Li~~~r 314 (314)
....+++|||+|||||||++++++... .+....++.|+||+|
T Consensus 244 ----~~~~piImIa~GTGIAPfrsflq~r~~~~~~~~~~~~~~g~v~L~~G~R 292 (406)
T cd06202 244 ----DPSVPVIMVGPGTGIAPFRSFWQQRQYDLRMSEDPGKKFGDMTLFFGCR 292 (406)
T ss_pred ----CCCCCEEEEcCCcChHHHHHHHHHHHHHhhhcccccCCCCCEEEEEcCC
Confidence 235789999999999999999997532 122357899999987
No 78
>KOG3378|consensus
Probab=99.45 E-value=2.1e-13 Score=127.96 Aligned_cols=136 Identities=26% Similarity=0.373 Sum_probs=106.0
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
+.|.+++|++.+.++.|+..+.+.+.++.-..
T Consensus 147 ~G~~~F~vT~~~~~sSDv~~~~~~PK~~~~~~------------------------------------------------ 178 (385)
T KOG3378|consen 147 DGEVEFKVTELINESSDVKSVYLGPKDPAFRI------------------------------------------------ 178 (385)
T ss_pred CCccceeeeeeeccccceeEEEecCCCcceee------------------------------------------------
Confidence 46999999999999999999999987663111
Q ss_pred ccCCCCCCcEEEEEeeeCCc--eeeeeeeeecC-CCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEc
Q psy5567 171 AWLGLPIGQHLSLSATINDE--FVARAYTPVTS-DEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSG 246 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~~~--~~~R~YTp~s~-~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~G 246 (314)
+...|||||.+....++. +.-|-|+.++. +..++.++|.||+. .+|.+|+|+ .++++||.|.++.
T Consensus 179 --~~~~PGQYvsV~~~~~~~~~k~~~~~~~S~~~~t~rN~~R~sVr~~---------A~G~VS~~~H~~~KVGD~v~~S~ 247 (385)
T KOG3378|consen 179 --SHAHPGQYVSVLWEIPGLSHKTLREYSLSNRVDTCRNQFRISVRRV---------AGGVVSNFVHDNLKVGDIVGVSP 247 (385)
T ss_pred --ccCCCCceEEEeecCCccchhHHHHHHHhhhhhhhccceeEEEeeh---------hchhhHHHhhccccccceeeccC
Confidence 167899999987765553 22344444432 22457799999998 889999999 6899999999999
Q ss_pred cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh
Q psy5567 247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 299 (314)
Q Consensus 247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~ 299 (314)
|-|+|.|... ..+..++++++|||+||||+++||+..+.
T Consensus 248 PAG~F~~~r~--------------~~~~N~PL~~~a~GiGiTPLi~iiE~~~~ 286 (385)
T KOG3378|consen 248 PAGNFVYKRS--------------EENVNRPLLCFAGGIGITPLIPIIETALL 286 (385)
T ss_pred CCccceeehh--------------hhccCCceEEecCCcCccccHHHHHHHHh
Confidence 9996555431 12234899999999999999999998765
No 79
>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo
Probab=99.44 E-value=3.6e-13 Score=133.83 Aligned_cols=107 Identities=20% Similarity=0.239 Sum_probs=82.2
Q ss_pred eeeeeeeeecCCC-CCceEEEEEEEEeecCCCCCCCCChhchHhhcCC---------------------CCCeEEEEccc
Q psy5567 191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK---------------------VGEPINVSGPR 248 (314)
Q Consensus 191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~---------------------~Gd~v~v~GP~ 248 (314)
...|.||++|++. ..+.++|+|++............|.+|+||+++. +||.|.+..|.
T Consensus 176 ~~pR~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~G~~S~~L~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~v~~~~ 255 (416)
T cd06204 176 LQPRYYSISSSSKVHPNRIHITAVVVKYPTPTGRIIKGVATNWLLALKPALNGEKPPTPYYLSGPRKKGGGSKVPVFVRR 255 (416)
T ss_pred CCCcceeeccCccCCCCEEEEEEEEEEeeCCCCCEEeeeehHHHHhhhhhhcccccccccccccccccCCCCeEEEEEec
Confidence 4679999999986 4588999999863322111223499999998777 89999999998
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC---CCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD---PTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~---~~~~~~v~Li~~~r 314 (314)
| .|.++. ....+++|||||||||||++|+++.... +....++.|+||+|
T Consensus 256 g--------~F~lp~---------~~~~piImIa~GtGIAP~~s~l~~~~~~~~~~~~~~~v~L~~G~R 307 (416)
T cd06204 256 S--------NFRLPT---------KPSTPVIMIGPGTGVAPFRGFIQERAALKESGKKVGPTLLFFGCR 307 (416)
T ss_pred C--------CCCCCC---------CCCCCEEEEeCCcchHHHHHHHHHHHHHhhccCccCCEEEEEcCC
Confidence 8 566654 2357999999999999999999976432 22246899999987
No 80
>PRK06214 sulfite reductase; Provisional
Probab=99.41 E-value=1.6e-12 Score=132.99 Aligned_cols=106 Identities=23% Similarity=0.301 Sum_probs=80.3
Q ss_pred eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccccCccccCCcceeecccCCCC
Q psy5567 191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268 (314)
Q Consensus 191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~ 268 (314)
...|+||++|++.. .+.++|+||+..... .+....|.+|+||+ ++++||.|.+.++.+. .|.++.
T Consensus 314 l~pR~YSISSsP~~~~~~i~ltV~~V~~~~-~~~~~~G~~S~~L~~~l~~Gd~V~v~i~~~~-------gF~lp~----- 380 (530)
T PRK06214 314 LQPRLYSISSSPKATPGRVSLTVDAVRYEI-GSRLRLGVASTFLGERLAPGTRVRVYVQKAH-------GFALPA----- 380 (530)
T ss_pred CCcEEEEeccCCcCCCCEEEEEEEEEeecc-CCccccchhhHHHHhcCCCCCEEEEEecCCC-------CCccCC-----
Confidence 46799999999863 689999999762221 22235799999995 7999999998763331 266654
Q ss_pred CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
....+++|||+|||||||++|+++...... ..+++|+||+|
T Consensus 381 ----~~~~PiImIg~GTGIAPfrsfLq~r~~~~~-~g~~~LffG~R 421 (530)
T PRK06214 381 ----DPNTPIIMVGPGTGIAPFRAFLHERAATKA-PGRNWLFFGHQ 421 (530)
T ss_pred ----CCCCCEEEEcCCeeHHHHHHHHHHHHHhcC-CCCeEEEEEec
Confidence 234689999999999999999998765432 46899999985
No 81
>KOG0039|consensus
Probab=99.25 E-value=6.7e-11 Score=123.78 Aligned_cols=125 Identities=16% Similarity=0.302 Sum_probs=101.5
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
...+++.+...+..|+..+++.-|...
T Consensus 354 ~~~~~i~~~~llp~~vi~L~~~Kp~~f----------------------------------------------------- 380 (646)
T KOG0039|consen 354 QKNVKIAKVVLLPSDVLELIMSKPPGF----------------------------------------------------- 380 (646)
T ss_pred hcCceEEEEEEcCCCeEEEEEeCCCCC-----------------------------------------------------
Confidence 344789999999999999999876321
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCC------------C
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKV------------G 239 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~------------G 239 (314)
.+.||||+.+.++.-....++|||++|++ +++++.++||.. |++|+.|. .+.. .
T Consensus 381 -~y~~Gqyifv~~p~ls~~qwHPFTItSsp-~dd~lsvhIk~~-----------g~wT~~L~~~~~~~~~~~~~~~~~~~ 447 (646)
T KOG0039|consen 381 -KYKPGQYIFVNCPSLSKLEWHPFTITSAP-EDDFLSVHIKAL-----------GDWTEKLRNAFSEVSQPPESDKSYPF 447 (646)
T ss_pred -CCCCCCEEEEECccccccccCCceeecCC-CCCEEEEEEEec-----------CcHHHHHHHHHhhhcccccccccccC
Confidence 78999999999887777889999999999 778999999964 99999883 3331 3
Q ss_pred CeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567 240 EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300 (314)
Q Consensus 240 d~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~ 300 (314)
-.+.+.||+|.- . . +..+++.++||+||+|+||+.++++.++.+
T Consensus 448 ~~i~IdGPYG~~--------s-~--------d~~~~e~~vLV~~GiGvtPf~sil~~l~~~ 491 (646)
T KOG0039|consen 448 PKILIDGPYGAP--------S-Q--------DVFKYEVLVLVGGGIGVTPFASILKDLLNK 491 (646)
T ss_pred ceEEEECCCCCC--------c-h--------hhhhcceEEEEccCcccCccHHHHHHHHhh
Confidence 468999999941 1 0 124688899999999999999999999865
No 82
>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]
Probab=99.19 E-value=9.3e-11 Score=121.23 Aligned_cols=106 Identities=24% Similarity=0.302 Sum_probs=87.1
Q ss_pred eeeeeeeeecCCCCC-ceEEEEEEEEeecCCCCCCCCChhchHhhcCCC-CCeEEEEccccCccccCCcceeecccCCCC
Q psy5567 191 FVARAYTPVTSDEHH-GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV-GEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268 (314)
Q Consensus 191 ~~~R~YTp~s~~~~~-g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~-Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~ 268 (314)
...|-||++|++... +.++|+|.++....+.+ ...|..|.||+++.+ ||.|.+....++ .|.++.
T Consensus 371 lkPR~YSIsSs~~~~~~~vhltV~vV~y~~~~~-~r~GvcS~~L~~~~~~g~~i~v~v~~n~-------nf~lp~----- 437 (587)
T COG0369 371 LKPRLYSIASSPGVSPDEVHLTVGVVRYQAEGR-ERYGVCSGYLADLLEEGDTIPVFVQPNK-------NFRLPE----- 437 (587)
T ss_pred CCCeeeEeccCCCCCCCeEEEEEEEEEeccCCC-cccccchHHHHhhhcCCCeEEEEeccCC-------ccccCC-----
Confidence 356999999998754 78899988876665545 467999999977776 999998877664 688877
Q ss_pred CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+..++++||+.|||||||++++++-..++. ..+.+|+||+|
T Consensus 438 ----~~~~PiIMIG~GTGIAPFRafvq~r~~~~~-~gk~wLfFG~R 478 (587)
T COG0369 438 ----DPETPIIMIGPGTGIAPFRAFVQERAANGA-EGKNWLFFGCR 478 (587)
T ss_pred ----CCCCceEEEcCCCCchhHHHHHHHHHhccc-cCceEEEecCC
Confidence 234899999999999999999999888775 45899999987
No 83
>KOG0534|consensus
Probab=99.18 E-value=2.1e-11 Score=115.98 Aligned_cols=51 Identities=51% Similarity=0.827 Sum_probs=48.0
Q ss_pred CccCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567 1 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG 51 (314)
Q Consensus 1 ~~lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~ 51 (314)
+.||+|+||||.+++.++|+.++|||||+|++.+.|+|||+||.|+.|.|+
T Consensus 78 ~~l~lp~g~hv~~~~~i~g~~vvRpYTPvs~~~~~g~~~l~VK~Y~~G~mS 128 (286)
T KOG0534|consen 78 HVLGLPIGQHVVLKAPIGGKLVVRPYTPVSLDDDKGYFDLVVKVYPKGKMS 128 (286)
T ss_pred hccCcccceEEEEEecCCCcEEEEecCCccCccccceEEEEEEeccCCccc
Confidence 478999999999999999999999999999998999999999999997764
No 84
>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]
Probab=98.92 E-value=2.6e-08 Score=93.88 Aligned_cols=133 Identities=16% Similarity=0.210 Sum_probs=101.0
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
...+.++|+.++++|++..+++|..+......
T Consensus 15 ~~~~~~~V~~~~~lsP~m~Rv~~~g~~l~~f~------------------------------------------------ 46 (265)
T COG2375 15 PRLHEATVTRVTQLSPHMVRVVLGGEGLAGFA------------------------------------------------ 46 (265)
T ss_pred ccceEEEEEEEEecCCCeEEEEEecccccccc------------------------------------------------
Confidence 45889999999999999999999987654321
Q ss_pred ccCCCC-CCcEEEEEeeeC--------------------CceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChh
Q psy5567 171 AWLGLP-IGQHLSLSATIN--------------------DEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKM 229 (314)
Q Consensus 171 ~~~~~~-~GQ~v~l~~~~~--------------------~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~ 229 (314)
... ..|||.|-++.+ .....|.||+-..+.+.++|++-+=.. .++|.+
T Consensus 47 ---~~~~~d~~ikL~fp~~~~~~~~~~~~~~~~~~~~~~~r~~~R~YTiR~~d~~~~e~~vDfVlH--------~~~gpa 115 (265)
T COG2375 47 ---SLGFGDQHIKLFFPPPDGDPPRLPVLEERGAVPPGAQRPPQRTYTIRAVDAAAGELDVDFVLH--------GEGGPA 115 (265)
T ss_pred ---cccCCCceeEEEecCccCCCCCCcccccccccCccccCCCcccceeeeecccccEEEEEEEEc--------CCCCcc
Confidence 112 233666555432 225689999987777777766655443 268999
Q ss_pred chHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC
Q psy5567 230 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD 300 (314)
Q Consensus 230 S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~ 300 (314)
|+|..+.++||+|.+.||.|. +..++ ..+.++|++--|++--+..+|+++-..
T Consensus 116 s~WA~~a~~GD~l~i~GP~g~--------~~p~~----------~~~~~lLigDetAlPAIa~iLE~lp~~ 168 (265)
T COG2375 116 SRWARTAQPGDTLTIMGPRGS--------LVPPE----------AADWYLLIGDETALPAIARILETLPAD 168 (265)
T ss_pred hhhHhhCCCCCEEEEeCCCCC--------CCCCC----------CcceEEEeccccchHHHHHHHHhCCCC
Confidence 999999999999999999994 33333 578999999999999999999876443
No 85
>KOG1159|consensus
Probab=98.88 E-value=7.6e-09 Score=103.74 Aligned_cols=103 Identities=23% Similarity=0.339 Sum_probs=79.5
Q ss_pred eeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCC
Q psy5567 192 VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 271 (314)
Q Consensus 192 ~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~ 271 (314)
..|.||++|.+.... ++|+|-++...+--+.|..|..|+||.+|++|+.|.+.--.| ++..+.
T Consensus 367 rPR~fSIas~~~~~~-leL~VAiV~ykT~l~~pRrGlCS~wl~sL~~g~~i~~~v~~g--------~l~~p~-------- 429 (574)
T KOG1159|consen 367 RPRAFSIASSPGAHH-LELLVAIVEYKTILKEPRRGLCSNWLASLKPGDEIPIKVRPG--------TLYFPS-------- 429 (574)
T ss_pred ccceeeeccCCCCCc-eeEEEEEEEEeeeccccccchhHHHHhhcCCCCeEEEEEecC--------ccccCC--------
Confidence 469999999998754 998887764444455678899999999999999887765555 344443
Q ss_pred CCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 272 ~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
....+++||+-||||||+++++++-..+.. ....|+||+|
T Consensus 430 -~~~~PlImVGPGTGvAPfRa~i~er~~q~~--~~~~lFfGCR 469 (574)
T KOG1159|consen 430 -DLNKPLIMVGPGTGVAPFRALIQERIYQGD--KENVLFFGCR 469 (574)
T ss_pred -CCCCCeEEEcCCCCcccHHHHHHHHHhhcc--CCceEEEecc
Confidence 236799999999999999999998765432 3447888987
No 86
>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins. This entry includes the vibriobactin utilization protein ViuB, which is involved in the removal of iron from iron-vibriobactin complexes, as well as several hypothetical proteins.; PDB: 2GPJ_A.
Probab=98.86 E-value=1.6e-08 Score=84.28 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=62.4
Q ss_pred EEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccccCCCC
Q psy5567 97 KLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLP 176 (314)
Q Consensus 97 ~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (314)
+|++++.+|++..+++|..++-.... ...
T Consensus 1 ~V~~~~~ltP~~~Rv~l~g~~l~~~~---------------------------------------------------~~~ 29 (117)
T PF08021_consen 1 TVVRVERLTPHMRRVTLGGEDLAGFP---------------------------------------------------SWG 29 (117)
T ss_dssp EEEEEEEEETTEEEEEEESGGGTT-----------------------------------------------------S--
T ss_pred CEEEEEECCCCEEEEEEECCCcccCc---------------------------------------------------cCC
Confidence 68999999999999999976543221 236
Q ss_pred CCcEEEEEeeeCCc---------------------eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc
Q psy5567 177 IGQHLSLSATINDE---------------------FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN 235 (314)
Q Consensus 177 ~GQ~v~l~~~~~~~---------------------~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~ 235 (314)
++||+.|.++.++. ...|.||+...+.+.++|+|-+-.. ...|..|+|..+
T Consensus 30 ~d~~ikL~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~R~YTvR~~d~~~~~l~iDfv~H--------g~~Gpas~WA~~ 101 (117)
T PF08021_consen 30 PDQHIKLFFPPPGGDPPLPPPLDEGGYRWPPDEQRPVMRTYTVRRFDPETGELDIDFVLH--------GDEGPASRWARS 101 (117)
T ss_dssp TT-EEEEEE--TTS----------------------EEEEEE--EEETT--EEEEEEE----------SS--HHHHHHHH
T ss_pred CCcEEEEEeCCCCCCccccccccccccccccccCCCCCCCcCEeeEcCCCCEEEEEEEEC--------CCCCchHHHHhh
Confidence 88888888876443 2689999999888888888877665 123999999999
Q ss_pred CCCCCeEEEEccccC
Q psy5567 236 MKVGEPINVSGPRGR 250 (314)
Q Consensus 236 l~~Gd~v~v~GP~G~ 250 (314)
+++||.|.|.||.|.
T Consensus 102 A~pGd~v~v~gP~g~ 116 (117)
T PF08021_consen 102 ARPGDRVGVTGPRGS 116 (117)
T ss_dssp --TT-EEEEEEEE--
T ss_pred CCCCCEEEEeCCCCC
Confidence 999999999999994
No 87
>KOG1158|consensus
Probab=98.85 E-value=7.3e-09 Score=107.89 Aligned_cols=109 Identities=26% Similarity=0.287 Sum_probs=75.0
Q ss_pred eeeeeeeeecCCC-CCceEEEEEEEEeecCCC-CCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCC
Q psy5567 191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNVHP-KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268 (314)
Q Consensus 191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~~~-~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~ 268 (314)
...|.||++|++. ..+.+.+++-+....... ....-|..|+||+++++|+.+..-+|.++. .|.+++
T Consensus 420 L~pR~YSIssS~~~~~~~vhl~~~vv~~~~~dg~~~r~GVcS~~L~~l~~~~~~~~~~~~~~s------~frlp~----- 488 (645)
T KOG1158|consen 420 LQPRYYSISSSPKVHPNEVHLTVTVVEYGTPDGGPKRYGVCSNWLSNLKPGEKVPNPVPVGKS------MFRLPS----- 488 (645)
T ss_pred ccccccccccCcccCCCEEEEEEEEeeeccCCCCCccceehhhhHHhcCCccccCcceeeccc------ceecCC-----
Confidence 5679999999875 345566655442111100 011229999999999999998754455532 466665
Q ss_pred CCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC----CCccEEEEEEeC
Q psy5567 269 PPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT----DNTKMSLIFANQ 314 (314)
Q Consensus 269 ~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~----~~~~v~Li~~~r 314 (314)
+...+++|||.|||||||++++++.+.... -...++|+||+|
T Consensus 489 ----dp~~PiIMIGpGTGiAPFRgFlq~r~~~~~~~~~~~~~~~Lf~GcR 534 (645)
T KOG1158|consen 489 ----DPSTPIIMIGPGTGIAPFRGFLQERLFLKQQGPKFGGGMWLFFGCR 534 (645)
T ss_pred ----CCCCcEEEEcCCCcchhhHHHHHHHHHhhhcCccCCcceEEEEeCC
Confidence 346899999999999999999998765421 122389999987
No 88
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=98.50 E-value=1.5e-08 Score=82.51 Aligned_cols=64 Identities=22% Similarity=0.216 Sum_probs=5.7
Q ss_pred CCCCCcEEEEEeeeCC--ceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcC--------CCCCeEE
Q psy5567 174 GLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENM--------KVGEPIN 243 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~--~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l--------~~Gd~v~ 243 (314)
.+.||||+.|.++.-. ...++|||+++.++ .+.+.|+||.. |.+|+.|.+. ..+-.+.
T Consensus 29 ~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~-~~~i~l~ik~~-----------g~~T~~L~~~~~~~~~~~~~~~~v~ 96 (105)
T PF08022_consen 29 KWKPGQYVFLSFPSISKWFWQWHPFTIASSPE-DNSITLIIKAR-----------GGWTKRLYEHLSESPSKQGNRLRVF 96 (105)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCceEEEEEEcCcCcCcccccccEeeccCC-CCEEEEEEEeC-----------CCchHHHHHHHhhhcccCCCceEEE
Confidence 6899999999997655 34889999999887 58999999975 8888888433 3445788
Q ss_pred EEcccc
Q psy5567 244 VSGPRG 249 (314)
Q Consensus 244 v~GP~G 249 (314)
+.||+|
T Consensus 97 idGPYG 102 (105)
T PF08022_consen 97 IDGPYG 102 (105)
T ss_dssp TTSTTS
T ss_pred EECCCC
Confidence 999999
No 89
>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain. To date, the 3D-structures of the flavoprotein domain of Zea mays (Maize) nitrate reductase [] and of pig NADH:cytochrome b5 reductase [] have been solved. The overall fold is similar to that of ferredoxin:NADP+ reductase []: the FAD-binding domain (N-terminal) has the topology of an anti-parallel beta-barrel, while the NAD(P)-binding domain (C-terminal) has the topology of a classical pyridine dinucleotide-binding fold (i.e. a central parallel beta-sheet flanked by 2 helices on each side).; PDB: 1JB9_A 3LVB_A 3LO8_A 1FRN_A 1FND_A 1BX1_A 1FNC_A 1FNB_A 1BX0_A 1FRQ_A ....
Probab=98.44 E-value=3.7e-07 Score=72.28 Aligned_cols=49 Identities=33% Similarity=0.614 Sum_probs=43.5
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG 51 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~ 51 (314)
+...+||||.++...+|+.+.|+|||++.+.+.|+++|+||.|++|.++
T Consensus 28 ~~~~pGQ~v~v~~~~~~~~~~R~yS~~s~~~~~~~~~~~ik~~~~G~~S 76 (99)
T PF00970_consen 28 LDFKPGQFVSVRVPINGKQVSRPYSPASSPDDKGYLEFAIKRYPNGRVS 76 (99)
T ss_dssp -SSTTT-EEEEEEEETTEEEEEEEEBCSSTTSSSEEEEEEEECTTSHHH
T ss_pred cccCcceEEEEEEccCCcceecceeEeeecCCCCcEEEEEEeccCCHHH
Confidence 5678999999999999999999999999999999999999999887654
No 90
>PLN02252 nitrate reductase [NADPH]
Probab=97.82 E-value=2.4e-05 Score=85.04 Aligned_cols=45 Identities=49% Similarity=0.786 Sum_probs=41.9
Q ss_pred ccCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeec
Q psy5567 2 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46 (314)
Q Consensus 2 ~lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~ 46 (314)
.+++++||||++++..+|+.++|+|||+|.+.+.|+|+|+||+|.
T Consensus 662 ~lgl~pGQhV~l~~~~~g~~~~R~YSpaS~~~~~g~lel~VK~~~ 706 (888)
T PLN02252 662 VLGLPVGKHVFLCATINGKLCMRAYTPTSSDDEVGHFELVIKVYF 706 (888)
T ss_pred cCCCCCCCEEEEEEecCCeEEEeeeEecccCCCCCEEEEEEEEEe
Confidence 468999999999999999999999999999888899999999993
No 91
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=97.00 E-value=0.00082 Score=60.43 Aligned_cols=47 Identities=47% Similarity=0.849 Sum_probs=41.5
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++...+|+...|+||+++.+.+.+.++|+||.+++|.
T Consensus 27 ~~~~pGq~v~l~~~~~~~~~~R~ysi~s~~~~~~~~~~~v~~~~~G~ 73 (234)
T cd06183 27 LGLPVGQHVELKAPDDGEQVVRPYTPISPDDDKGYFDLLIKIYPGGK 73 (234)
T ss_pred CCCCcccEEEEEecCCCcccccccccccCCCcCCEEEEEEEECCCCc
Confidence 45678999999998888889999999998888889999999998664
No 92
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=96.98 E-value=0.0012 Score=63.22 Aligned_cols=43 Identities=42% Similarity=0.845 Sum_probs=38.1
Q ss_pred cCCcccceEEEEEEeCCe----eeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDE----FVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~----~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
++..+|||+.++...+|+ .+.|+|||+|.+.+.|+++|.||.|
T Consensus 62 ~~~~pGQfi~l~~~~~~~~~~~~~~R~YS~~s~~~~~~~i~~~Ik~~ 108 (300)
T PTZ00319 62 LGLPIGQHIVFRCDCTTPGKPETVQHSYTPISSDDEKGYVDFLIKVY 108 (300)
T ss_pred CCCccceEEEEEEEeCCCCccceEEeeeccCCCcccCCEEEEEEEEe
Confidence 567899999999987654 5889999999988899999999998
No 93
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=96.90 E-value=0.0015 Score=63.52 Aligned_cols=49 Identities=29% Similarity=0.401 Sum_probs=40.9
Q ss_pred cCCcccceEEEEEEe---CCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567 3 LGLPIGQHLSLSATI---NDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG 51 (314)
Q Consensus 3 lglpvg~hv~~~~~~---~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~ 51 (314)
++..+|||+.+.... +++.+.|+|||+|.+.+.++++|.||.++.|.++
T Consensus 80 ~~f~pGQ~l~l~~~~~~~~~~~~~R~YSiaS~p~~~~~le~~IK~~~~G~~S 131 (325)
T PTZ00274 80 FNLKPCSTLQACYKYGVQPMDQCQRFYTPVTANHTKGYFDIIVKRKKDGLMT 131 (325)
T ss_pred cCCCCccEEEEEEecCCCCCCEEEEeeecCCCCCCCCeEEEEEEEcCCCccc
Confidence 567899999987653 2467899999999988889999999999988654
No 94
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=96.63 E-value=0.0034 Score=56.63 Aligned_cols=47 Identities=32% Similarity=0.426 Sum_probs=40.1
Q ss_pred cCCcccceEEEEEE-eCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSAT-INDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~-~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++.. .+|....||||+.+.+.+.|.++|+||.+.+|.
T Consensus 29 ~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~~~~l~l~v~~~~~G~ 76 (235)
T cd06217 29 PPFLAGQHVDLRLTAIDGYTAQRSYSIASSPTQRGRVELTVKRVPGGE 76 (235)
T ss_pred CCcCCcCeEEEEEecCCCceeeeeecccCCCCCCCeEEEEEEEcCCCc
Confidence 35678999999987 677778899999998888899999999987653
No 95
>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.
Probab=96.59 E-value=0.0028 Score=57.83 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=38.9
Q ss_pred cCCcccceEEEEEEeC-CeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATIN-DEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~-g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++...+ |+.+.|+||+++.+.+ |.++|+||.+++|.
T Consensus 23 ~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~-~~i~~~i~~~~~G~ 69 (241)
T cd06195 23 FRFQAGQFTKLGLPNDDGKLVRRAYSIASAPYE-ENLEFYIILVPDGP 69 (241)
T ss_pred CccCCCCeEEEeccCCCCCeeeecccccCCCCC-CeEEEEEEEecCCC
Confidence 3467899999998866 7888999999997765 89999999998754
No 96
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=96.57 E-value=0.004 Score=56.02 Aligned_cols=47 Identities=36% Similarity=0.456 Sum_probs=41.0
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++...+|+...|+||+.+.+.+.+.++|+||.+++|.
T Consensus 26 ~~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~ 72 (231)
T cd06215 26 FAYKPGQFLTLELEIDGETVYRAYTLSSSPSRPDSLSITVKRVPGGL 72 (231)
T ss_pred CCcCCCCeEEEEEecCCCeEEEeeecccCCCCCCcEEEEEEEcCCCc
Confidence 35678999999998888888999999998888889999999998764
No 97
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=96.52 E-value=0.0035 Score=55.62 Aligned_cols=47 Identities=28% Similarity=0.361 Sum_probs=40.9
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++...+|....|+||+.+.+.+.+.++|+||.++.|.
T Consensus 21 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~~~l~vk~~~~G~ 67 (223)
T cd00322 21 FSFKPGQYVDLHLPGDGRGLRRAYSIASSPDEEGELELTVKIVPGGP 67 (223)
T ss_pred CCcCCCcEEEEEecCCCCcceeeeeccCCCCCCCeEEEEEEEeCCCc
Confidence 34678999999998778889999999998888899999999998553
No 98
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=96.43 E-value=0.0064 Score=55.51 Aligned_cols=46 Identities=33% Similarity=0.439 Sum_probs=40.3
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCC-CceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~-~~g~~~llIK~Y~~gl 49 (314)
...+|||+.++...+|+...|+||+.+.+. +.+.++|+||.+++|.
T Consensus 45 ~~~pGQ~i~l~~~~~~~~~~r~ysi~s~~~~~~~~l~~~ik~~~~G~ 91 (243)
T cd06216 45 GHRAGQHVRLGVEIDGVRHWRSYSLSSSPTQEDGTITLTVKAQPDGL 91 (243)
T ss_pred CcCCCceEEEEEEECCeEEEEEEeccCCCcCCCCeEEEEEEEcCCCc
Confidence 457899999999888988899999999877 6899999999987654
No 99
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.39 E-value=0.0043 Score=69.62 Aligned_cols=41 Identities=20% Similarity=0.503 Sum_probs=38.4
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK 43 (314)
+++.+||||.++...+|+.+.|+|||+|.+++.++++|+||
T Consensus 946 ~~~~pGQfv~l~~~~~g~~~~R~YS~~S~p~~~~~i~l~Vr 986 (1167)
T PTZ00306 946 SGLTLGQFIAIRGDWDGQQLIGYYSPITLPDDLGVISILAR 986 (1167)
T ss_pred cCCCCCeEEEEEeeeCCeEEEEEeccCCCCCCCCeEEEEEE
Confidence 57899999999998899999999999999988899999998
No 100
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=96.28 E-value=0.0068 Score=54.98 Aligned_cols=46 Identities=30% Similarity=0.394 Sum_probs=39.5
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++...+|....|+||+.+.+.+. .++|+||.+++|.
T Consensus 31 ~~~~~GQ~v~l~~~~~g~~~~r~ysi~s~~~~~-~l~~~i~~~~~G~ 76 (241)
T cd06214 31 FRYRPGQFLTLRVPIDGEEVRRSYSICSSPGDD-ELRITVKRVPGGR 76 (241)
T ss_pred CCcCCCCeEEEEeecCCCeeeeeeeecCCCCCC-cEEEEEEEcCCCc
Confidence 457889999999998888889999999976554 8999999998764
No 101
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=96.27 E-value=0.0082 Score=54.30 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=39.0
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+|||+.++...+|+...|+||+.+.+. .++++|.||.++.|.
T Consensus 27 ~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~l~~~v~~~~~G~ 71 (231)
T cd06191 27 GFRPGQHVTLKLDFDGEELRRCYSLCSSPA-PDEISITVKRVPGGR 71 (231)
T ss_pred CCCCCCeEEEEEecCCeEEeeeeeccCCCC-CCeEEEEEEECCCCc
Confidence 457899999999888888899999999776 789999999987653
No 102
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=95.97 E-value=0.008 Score=54.38 Aligned_cols=44 Identities=14% Similarity=0.325 Sum_probs=36.8
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSI 48 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g 48 (314)
+...+|||+.++.. |....||||+++.+.+.|+++|+||.++.|
T Consensus 28 ~~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~l~l~vk~~~~G 71 (232)
T cd06212 28 IKFFAGQYVDITVP--GTEETRSFSMANTPADPGRLEFIIKKYPGG 71 (232)
T ss_pred CCcCCCCeEEEEcC--CCCcccccccCCCCCCCCEEEEEEEECCCC
Confidence 35678999999754 444789999999888889999999999876
No 103
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=95.89 E-value=0.014 Score=53.94 Aligned_cols=44 Identities=27% Similarity=0.395 Sum_probs=37.9
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
..+|||+.++...+|+.+.|+||..|.+.+ +.++|+||.+++|.
T Consensus 31 ~~pGQfv~l~~~~~g~~~~R~ySias~p~~-~~l~~~ik~~~~G~ 74 (248)
T PRK10926 31 FTAGQFTKLGLEIDGERVQRAYSYVNAPDN-PDLEFYLVTVPEGK 74 (248)
T ss_pred CCCCCEEEEEEecCCcEEEeeecccCCCCC-CeEEEEEEEeCCCC
Confidence 468999999998889888999999997654 58999999998775
No 104
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=95.88 E-value=0.013 Score=56.44 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=38.8
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV 50 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll 50 (314)
...+|||+.++.. +++...|+||..|.+.+.++++|.||.+++|.+
T Consensus 36 ~f~pGQfv~l~~~-~~~~~~R~ySias~p~~~~~l~i~Vk~~~~G~~ 81 (332)
T PRK10684 36 PYRAGQYALVSIR-NSAETLRAYTLSSTPGVSEFITLTVRRIDDGVG 81 (332)
T ss_pred CcCCCCEEEEEec-CCCEeeeeecccCCCCCCCcEEEEEEEcCCCcc
Confidence 3568999999976 556678999999988888899999999988753
No 105
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=95.85 E-value=0.01 Score=53.03 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.4
Q ss_pred cCCcccceEEEEEEeCC-eeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567 3 LGLPIGQHLSLSATIND-EFVARAYTPVTSDEHHGYMDLVVKSVPS 47 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g-~~v~RpYTPvs~~~~~g~~~llIK~Y~~ 47 (314)
+...+|||+.++...+| +...|+||+.|.+.+ +.++|+||.++.
T Consensus 26 ~~~~pGQ~v~l~~~~~~~~~~~r~ySi~s~~~~-~~l~~~vk~~~~ 70 (218)
T cd06196 26 YDFTPGQATEVAIDKPGWRDEKRPFTFTSLPED-DVLEFVIKSYPD 70 (218)
T ss_pred CCCCCCCEEEEEeeCCCCCccccccccccCCCC-CeEEEEEEEcCC
Confidence 35678999999987655 457799999997654 899999999985
No 106
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=95.85 E-value=0.01 Score=53.61 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=36.7
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV 50 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll 50 (314)
+...+|||+.++.. |....|+||+.+.+.+ +.++|+||.+++|.+
T Consensus 29 ~~~~pGQ~v~l~~~--~~~~~r~ysi~s~~~~-~~i~~~i~~~~~G~~ 73 (228)
T cd06209 29 LAFLPGQYVNLQVP--GTDETRSYSFSSAPGD-PRLEFLIRLLPGGAM 73 (228)
T ss_pred CccCCCCEEEEEeC--CCCcccccccccCCCC-CeEEEEEEEcCCCcc
Confidence 34678999999854 5567899999997766 899999999987754
No 107
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=95.85 E-value=0.015 Score=56.28 Aligned_cols=45 Identities=29% Similarity=0.501 Sum_probs=38.8
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+||||.++...+|..+.|+||..|.+. .++++|.||.++.|.
T Consensus 32 ~~~pGQ~v~l~~~~~g~~~~R~ySi~s~p~-~~~l~i~vk~~~~G~ 76 (352)
T TIGR02160 32 RFAPGQHLTLRREVDGEELRRSYSICSAPA-PGEIRVAVKKIPGGL 76 (352)
T ss_pred CCCCCCeEEEEEecCCcEeeeeccccCCCC-CCcEEEEEEEeCCCc
Confidence 567899999999888988899999888653 589999999998764
No 108
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=95.74 E-value=0.013 Score=52.95 Aligned_cols=44 Identities=20% Similarity=0.292 Sum_probs=36.7
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+|||+.++.. +....|+||+.+.+.+.+.++|+||.+++|.
T Consensus 27 ~~~pGQ~~~l~~~--~~~~~r~ysi~s~~~~~~~l~~~vk~~~~G~ 70 (227)
T cd06213 27 AYKAGQYAELTLP--GLPAARSYSFANAPQGDGQLSFHIRKVPGGA 70 (227)
T ss_pred CcCCCCEEEEEeC--CCCcccccccCCCCCCCCEEEEEEEECCCCc
Confidence 4568999999874 4447899999998877899999999998764
No 109
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=95.70 E-value=0.015 Score=52.73 Aligned_cols=46 Identities=13% Similarity=0.296 Sum_probs=38.0
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV 50 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll 50 (314)
+...+|||+.++.. |....|+||+.+.+.+.|.++|.||.++.|.+
T Consensus 33 ~~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~~~~~l~~~i~~~~~G~~ 78 (236)
T cd06210 33 AEFVPGQFVEIEIP--GTDTRRSYSLANTPNWDGRLEFLIRLLPGGAF 78 (236)
T ss_pred CCcCCCCEEEEEcC--CCccceecccCCCCCCCCEEEEEEEEcCCCcc
Confidence 46778999999854 55578999999988878999999999876643
No 110
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=95.65 E-value=0.014 Score=52.19 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=37.0
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV 50 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll 50 (314)
...+|||+.++..- +....|+||+.|.+.+.+.++|+||.+.+|.+
T Consensus 23 ~~~pGq~i~l~~~~-~~~~~r~ysi~s~~~~~~~~~~~i~~~~~G~~ 68 (224)
T cd06187 23 PFWAGQYVNVTVPG-RPRTWRAYSPANPPNEDGEIEFHVRAVPGGRV 68 (224)
T ss_pred CcCCCceEEEEcCC-CCCcceeccccCCCCCCCEEEEEEEeCCCCcc
Confidence 46789999999763 23477999999988778899999999876543
No 111
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=95.58 E-value=0.012 Score=55.79 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=35.3
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+||||.++ .+|..+.|+||+.|.+ +.|+++|+||.++.|.
T Consensus 83 ~~~pGQ~v~v~--~~g~~~~R~YSias~p-~~g~l~l~Vk~~~~G~ 125 (289)
T cd06201 83 SFEAGDLLGIL--PPGSDVPRFYSLASSS-SDGFLEICVRKHPGGL 125 (289)
T ss_pred CcCccCEEEEe--cCCCCCCceEecCCCC-CCCeEEEEEEeCCCcc
Confidence 35589999996 4687788999999977 4589999999987653
No 112
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=95.46 E-value=0.021 Score=55.35 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=37.7
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++. +|....|+||+.|.+.+.+.++|+||.+++|.
T Consensus 135 ~~~~pGQ~v~l~~--~~~~~~R~ySias~p~~~~~l~~~ik~~~~G~ 179 (340)
T PRK11872 135 LDFLPGQYARLQI--PGTDDWRSYSFANRPNATNQLQFLIRLLPDGV 179 (340)
T ss_pred cCcCCCCEEEEEe--CCCCceeecccCCCCCCCCeEEEEEEECCCCc
Confidence 3567899998885 46667899999998888899999999998764
No 113
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=95.44 E-value=0.026 Score=51.55 Aligned_cols=46 Identities=24% Similarity=0.246 Sum_probs=37.5
Q ss_pred cCCcccceEEEEEEeCC--eeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATIND--EFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g--~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++...+| ..+.|+||+.+.+.+ +.++|+||.+++|.
T Consensus 35 ~~~~pGQ~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~l~~~ik~~~~G~ 82 (247)
T cd06184 35 PPFLPGQYLSVRVKLPGLGYRQIRQYSLSDAPNG-DYYRISVKREPGGL 82 (247)
T ss_pred CCCCCCCEEEEEEecCCCCCceeEEeEeccCCCC-CeEEEEEEEcCCCc
Confidence 45778999999988766 568899999987654 38999999988653
No 114
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=95.37 E-value=0.019 Score=52.38 Aligned_cols=45 Identities=24% Similarity=0.343 Sum_probs=37.2
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV 50 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll 50 (314)
...+|||+.++.. +....||||+.+.+.+.|.++|+||.+++|.+
T Consensus 35 ~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~l~l~i~~~~~G~~ 79 (238)
T cd06211 35 EFQAGQYVNLQAP--GYEGTRAFSIASSPSDAGEIELHIRLVPGGIA 79 (238)
T ss_pred ccCCCCeEEEEcC--CCCCccccccCCCCCCCCEEEEEEEECCCCcc
Confidence 5689999999854 44467999999988778999999999987643
No 115
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=95.22 E-value=0.024 Score=51.08 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=37.1
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG 51 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~ 51 (314)
+...+|||+.++..- + ..||||+.+.+.+.+.++|.||.++.|.++
T Consensus 24 ~~~~pGQ~v~l~~~~-~--~~r~ySi~s~~~~~~~l~~~vk~~~~G~~s 69 (224)
T cd06189 24 LDFLAGQYLDLLLDD-G--DKRPFSIASAPHEDGEIELHIRAVPGGSFS 69 (224)
T ss_pred cccCCCCEEEEEcCC-C--CceeeecccCCCCCCeEEEEEEecCCCccH
Confidence 456789999999752 2 379999999888789999999999866543
No 116
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=94.99 E-value=0.026 Score=51.01 Aligned_cols=44 Identities=23% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+|||+.++.. +....|+||+.+.+.+.+.++|+||.+..|.
T Consensus 23 ~~~pGQ~v~l~~~--~~~~~r~ySi~s~~~~~~~~~~~vk~~~~G~ 66 (232)
T cd06190 23 DFLPGQYALLALP--GVEGARAYSMANLANASGEWEFIIKRKPGGA 66 (232)
T ss_pred ccCCCCEEEEECC--CCCcccCccCCcCCCCCCEEEEEEEEcCCCc
Confidence 4678999999974 3346799999998877899999999987654
No 117
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=94.99 E-value=0.022 Score=50.89 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=37.1
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+||||.++....+....||||+++.+.+.|.++|.||.+
T Consensus 21 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~~~~l~l~vk~~ 63 (216)
T cd06198 21 LGHRAGQFAFLRFDASGWEEPHPFTISSAPDPDGRLRFTIKAL 63 (216)
T ss_pred CCcCCCCEEEEEeCCCCCCCCCCcEEecCCCCCCeEEEEEEeC
Confidence 4567899999998766677889999999888889999999974
No 118
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=94.90 E-value=0.037 Score=54.35 Aligned_cols=47 Identities=21% Similarity=0.192 Sum_probs=37.9
Q ss_pred cCCcccceEEEEEEeCCeeeE--EeccCCCCCCCceeEEEEeeeecccee
Q psy5567 3 LGLPIGQHLSLSATINDEFVA--RAYTPVTSDEHHGYMDLVVKSVPSILV 50 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~--RpYTPvs~~~~~g~~~llIK~Y~~gll 50 (314)
+...+|||+.++...+|.... |+||..|.+. .+.++|.||.+++|.+
T Consensus 183 ~~~~pGQ~v~l~~~~~~~~~~~~R~ySias~p~-~~~l~~~Vk~~~~G~~ 231 (399)
T PRK13289 183 ADFKPGQYLGVRLDPEGEEYQEIRQYSLSDAPN-GKYYRISVKREAGGKV 231 (399)
T ss_pred CCCCCCCeEEEEEecCCccccceeEEEeeeCCC-CCeEEEEEEECCCCee
Confidence 356789999999988887665 9999887654 5799999999987643
No 119
>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy
Probab=94.66 E-value=0.027 Score=51.54 Aligned_cols=44 Identities=23% Similarity=0.111 Sum_probs=37.3
Q ss_pred CCcccceEEEEEEeCC-------------------eeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567 4 GLPIGQHLSLSATIND-------------------EFVARAYTPVTSDEHHGYMDLVVKSVPS 47 (314)
Q Consensus 4 glpvg~hv~~~~~~~g-------------------~~v~RpYTPvs~~~~~g~~~llIK~Y~~ 47 (314)
....|||+.++...+| ....|+||+.+.+.+.|+++|.||.+..
T Consensus 26 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~YSi~~~~~~~~~l~~~v~~~~~ 88 (235)
T cd06193 26 SDGPDQHVKLLFPDPGQAPPVLPVLGRRRWPPEEPRPVMRTYTVRRFDPEAGELDIDFVLHGD 88 (235)
T ss_pred CCCCCceEEEEecCCCCCCCCCccccccccCCcccCCcCcccceeEEcCCCCEEEEEEEeCCC
Confidence 3467999999987654 5788999999987788999999999876
No 120
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=94.60 E-value=0.037 Score=52.02 Aligned_cols=43 Identities=23% Similarity=0.335 Sum_probs=35.2
Q ss_pred CCcccceEEEEEEeC-----------------------------CeeeEEeccCCCCCCCceeEEEEeeeec
Q psy5567 4 GLPIGQHLSLSATIN-----------------------------DEFVARAYTPVTSDEHHGYMDLVVKSVP 46 (314)
Q Consensus 4 glpvg~hv~~~~~~~-----------------------------g~~v~RpYTPvs~~~~~g~~~llIK~Y~ 46 (314)
...+||||.++...+ |+.+.|+||..|.+.+.+.++|.||.+.
T Consensus 38 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~l~vk~~~ 109 (283)
T cd06188 38 AFKAGGYIQIEIPAYEIAYADFDVAEKYRADWDKFGLWQLVFKHDEPVSRAYSLANYPAEEGELKLNVRIAT 109 (283)
T ss_pred eecCCceEEEEcCCccccccccccchhhhhHHhhhcccccccccCCccccccCcCCCCCCCCeEEEEEEEec
Confidence 457899999997532 4557799999998887899999999853
No 121
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=94.24 E-value=0.067 Score=47.94 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=35.9
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecccee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILV 50 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll 50 (314)
+...+|||+.++.. + ...|+||+.|.+.+.+.++|+||.++.|.+
T Consensus 22 ~~~~pGQ~v~l~~~-~--~~~r~ySi~s~~~~~~~~~~~i~~~~~G~~ 66 (222)
T cd06194 22 LPYLPGQYVNLRRA-G--GLARSYSPTSLPDGDNELEFHIRRKPNGAF 66 (222)
T ss_pred CCcCCCCEEEEEcC-C--CCceeeecCCCCCCCCEEEEEEEeccCCcc
Confidence 34678999999974 2 245999999988777899999999976543
No 122
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=94.08 E-value=0.057 Score=49.38 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=35.5
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKS 44 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~ 44 (314)
...+|||+.++...++....||||+.+.+.+.++++|.||.
T Consensus 24 ~~~pGQ~v~l~~~~~~~~~~rpySi~s~~~~~~~l~l~i~~ 64 (243)
T cd06192 24 LFRPGQFVFLRNFESPGLERIPLSLAGVDPEEGTISLLVEI 64 (243)
T ss_pred cCCCCCeEEEecCCCCCceeeeeEeeecCCCCCEEEEEEEE
Confidence 45689999999876667788999999988788999999986
No 123
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=93.98 E-value=0.07 Score=47.36 Aligned_cols=42 Identities=14% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSI 48 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g 48 (314)
...+|||+.++... ...|+||+.+.+.+.+.++|+||.+++|
T Consensus 25 ~~~pGQ~~~l~~~~---~~~r~ySi~s~~~~~~~l~~~v~~~~~g 66 (211)
T cd06185 25 AFEPGAHIDVHLPN---GLVRQYSLCGDPADRDRYRIAVLREPAS 66 (211)
T ss_pred CCCCCceEEEEcCC---CCceeeeccCCCCCCCEEEEEEEeccCC
Confidence 57889999999643 4579999999888789999999999765
No 124
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=93.67 E-value=0.072 Score=48.41 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=34.2
Q ss_pred cCCcccceEEEEEEeC----------------CeeeEEeccCCCCCCCc---eeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATIN----------------DEFVARAYTPVTSDEHH---GYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~----------------g~~v~RpYTPvs~~~~~---g~~~llIK~Y 45 (314)
++..+||||.++.... ++.+.|+||..|.+.+. +.++|.||..
T Consensus 24 ~~~~pGQ~v~l~~~~~~~~~~~~~~~~~p~~~~~~~~R~ySias~p~~~~~~~~l~l~vk~~ 85 (220)
T cd06197 24 GKWTPGQYITLDFSSELDSGYSHMADDDPQSLNDDFVRTFTVSSAPPHDPATDEFEITVRKK 85 (220)
T ss_pred cccCCCceEEEEccccccccccccccCCcchhcCCceeeEEeecCCccCCCCCEEEEEEEeC
Confidence 5677899999997531 34678999999988653 8999999974
No 125
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=93.56 E-value=0.095 Score=50.47 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=36.1
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++.. ++ ..|+||+.|.+.+.++++|+||.++.|.
T Consensus 130 ~~~~pGQfv~l~~~-~~--~~R~ySias~p~~~~~l~~~ik~~~~G~ 173 (339)
T PRK07609 130 LQYLAGQYIEFILK-DG--KRRSYSIANAPHSGGPLELHIRHMPGGV 173 (339)
T ss_pred CccCCCCeEEEECC-CC--ceeeeecCCCCCCCCEEEEEEEecCCCc
Confidence 34568999999864 23 3699999998888899999999998774
No 126
>PRK05713 hypothetical protein; Provisional
Probab=93.10 E-value=0.11 Score=49.62 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=36.9
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG 51 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~ 51 (314)
+...+|||+.++.. + .+.|+|+..|.+.+.++++|.||.++.|.++
T Consensus 117 ~~~~~GQfv~l~~~--~-~~~R~ySias~p~~~~~l~~~I~~~~~G~~s 162 (312)
T PRK05713 117 LRYRAGQHLVLWTA--G-GVARPYSLASLPGEDPFLEFHIDCSRPGAFC 162 (312)
T ss_pred CCcCCCCEEEEecC--C-CcccccccCcCCCCCCeEEEEEEEcCCCccc
Confidence 34578999999762 3 3689999999888789999999999876443
No 127
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=91.39 E-value=0.2 Score=46.28 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=35.5
Q ss_pred cCCcccceEEEEEEe-CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~-~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+|||+.++... ++....|+||+.|.+.+.+.++|.||.+
T Consensus 23 ~~~~pGQ~v~l~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~ 66 (246)
T cd06218 23 AAAKPGQFVMLRVPDGSDPLLRRPISIHDVDPEEGTITLLYKVV 66 (246)
T ss_pred ccCCCCcEEEEEeCCCCCCcCCCceEeeeccCCCCEEEEEEEEE
Confidence 356789999999875 4455779999999777788999999986
No 128
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=91.30 E-value=0.32 Score=46.08 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=40.3
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSI 48 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g 48 (314)
..+||||.+....+|+.++|.||=.|.+.+...+.+-||..+.|
T Consensus 35 f~pGQ~i~v~l~~~~~~~~R~YSl~s~p~~~~~~~isVk~~~~G 78 (266)
T COG1018 35 FEPGQYITVGLPNGGEPLLRAYSLSSAPDEDSLYRISVKREDGG 78 (266)
T ss_pred cCCCCeEEEEecCCCceeeEEEEeccCCCCCceEEEEEEEeCCC
Confidence 46899999999999999999999999999889999999998763
No 129
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=90.71 E-value=0.27 Score=46.16 Aligned_cols=43 Identities=26% Similarity=0.379 Sum_probs=34.6
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCC-ceeEEEEeeeecc
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKSVPS 47 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~-~g~~~llIK~Y~~ 47 (314)
+...+||||.++. +|....|+||..|.+++ .+.++|.||..+.
T Consensus 30 ~~~~pGQ~v~l~~--~~~~~~R~ySias~p~~~~~~l~l~Ik~~~~ 73 (267)
T cd06182 30 LKYQPGDHLGVIP--PNPLQPRYYSIASSPDVDPGEVHLCVRVVSY 73 (267)
T ss_pred CccCCCCEEEEec--CCCCCCeeEeecCCCCCCCCEEEEEEEEEEE
Confidence 4567899998885 46667899999998754 7999999998643
No 130
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=90.71 E-value=0.27 Score=45.92 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=39.6
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccceee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSILVG 51 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gll~ 51 (314)
+...+||+|+++..- ...|||+.-+.+.++|.++|.|++|+.|.++
T Consensus 34 ~~~~pGQfv~l~~~~---~~~~P~si~~~~~~~g~~~l~i~~~~~G~~T 79 (252)
T COG0543 34 LTFKPGQFVMLRVPG---GVRRPYSLASAPDDKGELELHIRVYEVGKVT 79 (252)
T ss_pred cccCCCcEEEEEeCC---CcEEEeeeccCCCcCCcEEEEEEEEeCChHH
Confidence 457899999999876 6789999999888899999999999877654
No 131
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=90.58 E-value=0.3 Score=43.29 Aligned_cols=44 Identities=18% Similarity=0.284 Sum_probs=36.7
Q ss_pred cCCcccceEEEEEEeC-CeeeEEeccCCCCCCC-ceeEEEEeeeec
Q psy5567 3 LGLPIGQHLSLSATIN-DEFVARAYTPVTSDEH-HGYMDLVVKSVP 46 (314)
Q Consensus 3 lglpvg~hv~~~~~~~-g~~v~RpYTPvs~~~~-~g~~~llIK~Y~ 46 (314)
+...+|||+.++.... +....||||..+.+.+ .+.++|+||.+.
T Consensus 23 ~~~~pGq~v~l~~~~~~~~~~~hpfsias~~~~~~~~i~~~vk~~~ 68 (210)
T cd06186 23 FKWKPGQHVYLNFPSLLSFWQSHPFTIASSPEDEQDTLSLIIRAKK 68 (210)
T ss_pred CccCCCCEEEEEeCCCCCCcccCCcEeeeCCCCCCCEEEEEEEecC
Confidence 3567899999998765 6567799999998776 799999999975
No 132
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=89.50 E-value=0.45 Score=47.41 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=34.4
Q ss_pred CCcccceEEEEEEe-----------------------------CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~-----------------------------~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
...+||||.++... .++...|+|+..|.+.+.++++|.||.+
T Consensus 162 ~~~pGQ~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~ 232 (409)
T PRK05464 162 PFRAGGYIQIEAPPHKVKYKDFDIPEEYRGDWDKFNLFRLVSKVDEPVIRAYSMANYPEEKGIIMLNVRIA 232 (409)
T ss_pred cccCCceEEEEcccccccccccccchhhhhhhhhccccceeccCCCceeeeeccCCCCCCCCeEEEEEEEe
Confidence 35689999998752 2346789999999988889999999985
No 133
>PRK08051 fre FMN reductase; Validated
Probab=89.46 E-value=0.48 Score=43.12 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+|||+.++... ...||||..|.+.+.+.++|+||..+.+.
T Consensus 29 ~~~pGQ~v~l~~~~---~~~r~ySias~p~~~~~l~~~v~~~~~~~ 71 (232)
T PRK08051 29 SFRAGQYLMVVMGE---KDKRPFSIASTPREKGFIELHIGASELNL 71 (232)
T ss_pred ccCCCCEEEEEcCC---CcceeecccCCCCCCCcEEEEEEEcCCCc
Confidence 46789999999742 24599999998877789999999887653
No 134
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=88.25 E-value=0.6 Score=43.24 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=33.5
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+|||+.++....++ ||||+.+.+.+.+.++|.||..
T Consensus 26 ~~~~pGQ~i~l~~~~~~~---~pySi~s~~~~~~~l~~~Ik~~ 65 (253)
T cd06221 26 FTFKPGQFVMLSLPGVGE---APISISSDPTRRGPLELTIRRV 65 (253)
T ss_pred CCcCCCCEEEEEcCCCCc---cceEecCCCCCCCeEEEEEEeC
Confidence 456789999999875554 8999999888789999999974
No 135
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=87.30 E-value=0.46 Score=43.83 Aligned_cols=40 Identities=25% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
...+|||+.++...+|+ .||||..+.+.+.++++|.||..
T Consensus 26 ~~~pGQf~~l~~~~~~~--~~pySi~s~~~~~~~~~~~vk~~ 65 (248)
T cd06219 26 KAKPGQFVIVRADEKGE--RIPLTIADWDPEKGTITIVVQVV 65 (248)
T ss_pred cCCCCcEEEEEcCCCCC--ccceEeEEEcCCCCEEEEEEEeC
Confidence 45689999999865443 48999999877789999999985
No 136
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=86.93 E-value=0.63 Score=46.30 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=33.5
Q ss_pred CcccceEEEEEEe-----------------------------CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 5 LPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 5 lpvg~hv~~~~~~-----------------------------~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
..+|||+.++..- .|+...|+|+..|.+.+.++++|.||..
T Consensus 159 ~~pGQfv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~ySias~p~~~~~l~~~vr~~ 228 (405)
T TIGR01941 159 FKAGGYIQIEAPPHVVKYADFDIPPEYRGDWEKFNLFDLVSKVDEETVRAYSMANYPAEKGIIKLNVRIA 228 (405)
T ss_pred ecCCceEEEEcccccccccccccchhhhhhHhhhcchheeccCCCccceeecCCCCCCCCCeEEEEEEEe
Confidence 4579999998652 2456789999999988889999999984
No 137
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=86.72 E-value=0.86 Score=43.19 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=31.7
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+|||+.++..-++. ||||..|.+.+.|+++|+||..
T Consensus 36 ~~~~pGQ~v~l~~~~~~~---~pySias~p~~~~~l~l~Ik~~ 75 (289)
T PRK08345 36 FTFKPGQFVQVTIPGVGE---VPISICSSPTRKGFFELCIRRA 75 (289)
T ss_pred CCcCCCCEEEEEcCCCCc---eeeEecCCCCCCCEEEEEEEeC
Confidence 346789999998754333 7999888777789999999973
No 138
>PRK05802 hypothetical protein; Provisional
Probab=84.14 E-value=1.5 Score=42.55 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=34.5
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeee
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKS 44 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~ 44 (314)
..+||+|+++...++....|||+-.+.+.+.|.++|+||.
T Consensus 95 ~~PGQFv~l~~~~~~~~~~rP~SI~~~~~~~g~l~l~ik~ 134 (320)
T PRK05802 95 VYPGSFVFLRNKNSSSFFDVPISIMEADTEENIIKVAIEI 134 (320)
T ss_pred CCCCceEEEEEcCCCCEeEEeeEecccCCCCCEEEEEEEe
Confidence 4789999999876666677999999888788999999987
No 139
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=83.75 E-value=1.1 Score=41.25 Aligned_cols=41 Identities=12% Similarity=0.204 Sum_probs=34.0
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+|||+.++...++....||||..+.+ .++++|.||..
T Consensus 30 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~--~~~l~l~Vk~~ 70 (250)
T PRK00054 30 FDMKPGQFVMVWVPGVEPLLERPISISDID--KNEITILYRKV 70 (250)
T ss_pred cCCCCCcEEEEEeCCCCCcCceeeEEeeeC--CCEEEEEEEEc
Confidence 346789999999876666678999999876 68999999974
No 140
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=82.88 E-value=1.1 Score=42.25 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=32.1
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
...+|||+.++....|. -||||..+.+.+.++++|+||..
T Consensus 27 ~~~pGQfv~l~~~~~~~--~rpySias~~~~~~~i~l~vk~~ 66 (281)
T PRK06222 27 KAKPGQFVIVRIDEKGE--RIPLTIADYDREKGTITIVFQAV 66 (281)
T ss_pred cCCCCeEEEEEeCCCCC--ceeeEeeEEcCCCCEEEEEEEeC
Confidence 35689999999864443 48999998777789999999974
No 141
>PLN02292 ferric-chelate reductase
Probab=80.76 E-value=1.7 Score=46.81 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=33.7
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCC-CceeEEEEeeee
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKSV 45 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~-~~g~~~llIK~Y 45 (314)
..+|||+.+.....+....||||+.|.+. ++++++|+||.+
T Consensus 352 ~~PGQ~vfL~~P~~s~~q~HPFTIaSsp~~~~~~l~l~IK~~ 393 (702)
T PLN02292 352 YSPTSIMFVNIPSISKLQWHPFTITSSSKLEPEKLSVMIKSQ 393 (702)
T ss_pred cCCCCeEEEEEccCCccceeeeEeeccCCCCCCEEEEEEEcC
Confidence 45799999998655566789999999764 678999999975
No 142
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=79.80 E-value=1.8 Score=40.92 Aligned_cols=44 Identities=20% Similarity=0.166 Sum_probs=32.7
Q ss_pred CCcccceEEEEEEe----CCe-eeEEeccCCCCCCC----ceeEEEEeeeecc
Q psy5567 4 GLPIGQHLSLSATI----NDE-FVARAYTPVTSDEH----HGYMDLVVKSVPS 47 (314)
Q Consensus 4 glpvg~hv~~~~~~----~g~-~v~RpYTPvs~~~~----~g~~~llIK~Y~~ 47 (314)
...+||||.++... +|. ...|+|+..|.+.+ .++++|.||..+.
T Consensus 40 ~~~pGQ~v~l~~~~~~~~~g~~~~~R~YSIas~p~~~~~~~~~l~l~Vk~~~~ 92 (286)
T cd06208 40 PYLEGQSIGIIPPGTDAKNGKPHKLRLYSIASSRYGDDGDGKTLSLCVKRLVY 92 (286)
T ss_pred cccCCceEEEECCCcchhcCCCCCceeeEecCCccccCCCCCEEEEEEEEEEE
Confidence 34579999997531 343 36799999997643 5799999999854
No 143
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=71.83 E-value=3.9 Score=37.66 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=31.6
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPS 47 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~ 47 (314)
..+||++.++.. +....|+|+-.|.+. .++++|.||.++.
T Consensus 32 f~pGQ~v~l~~~--~~~~~R~YSIas~p~-~~~l~l~Vk~~~~ 71 (245)
T cd06200 32 WQAGDIAEIGPR--HPLPHREYSIASLPA-DGALELLVRQVRH 71 (245)
T ss_pred ccCCcEEEecCC--CCCCCcceEeccCCC-CCEEEEEEEEecc
Confidence 457999999853 344669999988764 5789999999876
No 144
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=71.77 E-value=4.3 Score=40.76 Aligned_cols=42 Identities=21% Similarity=0.288 Sum_probs=31.7
Q ss_pred CcccceEEEEEE---eCCee-eEEeccCCCCCCC--c--eeEEEEeeeec
Q psy5567 5 LPIGQHLSLSAT---INDEF-VARAYTPVTSDEH--H--GYMDLVVKSVP 46 (314)
Q Consensus 5 lpvg~hv~~~~~---~~g~~-v~RpYTPvs~~~~--~--g~~~llIK~Y~ 46 (314)
.-+||+|.++.. .+|+. +.|+|+..|.+.+ . +.++|+||.++
T Consensus 176 ~~pGQfv~l~~pg~~~~g~~~~~R~YSIas~~~~~~~~~~~l~l~Vk~v~ 225 (411)
T TIGR03224 176 VLEGQSIGILPPGTDASGKPHYARMYSVASPRNGERPGYNNLALTVKRVT 225 (411)
T ss_pred ccCCcEEEEecCCcCcCCCcCcceeeeecCCCCccCCCCCEEEEEEEEEE
Confidence 457999999864 25554 6799999997532 1 47999999985
No 145
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=71.69 E-value=4.9 Score=37.49 Aligned_cols=37 Identities=24% Similarity=0.362 Sum_probs=28.6
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
...+|||+.++...++. |||+..+. +.+.++|+||..
T Consensus 32 ~~~pGQfi~l~~~~~~~---~pySi~~~--~~~~~~~~Ik~~ 68 (263)
T PRK08221 32 PVKPGQFFEVSLPKVGE---APISVSDY--GDGYIDLTIRRV 68 (263)
T ss_pred CCCCCceEEEEeCCCCc---ceeeccCC--CCCEEEEEEEeC
Confidence 45689999999865443 89997664 367899999975
No 146
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=69.52 E-value=6.2 Score=36.77 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=28.7
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
...+|||+.++....+. ||||..+. +.+.++|+||.+
T Consensus 30 ~~~pGQ~v~l~~~~~~~---~pySi~~~--~~~~l~~~Vk~~ 66 (261)
T TIGR02911 30 PVKPGQFFEVSLPKYGE---APISVSGI--GEGYIDLTIRRV 66 (261)
T ss_pred CCCCCcEEEEEecCCCc---cceecCCC--CCCeEEEEEEeC
Confidence 35689999999875553 79997663 368999999975
No 147
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=66.21 E-value=2.7 Score=22.12 Aligned_cols=12 Identities=42% Similarity=0.911 Sum_probs=10.0
Q ss_pred cccCCCCCCcEE
Q psy5567 170 FAWLGLPIGQHL 181 (314)
Q Consensus 170 ~~~~~~~~GQ~v 181 (314)
|+|+.+.+||-+
T Consensus 1 WhWL~~~~GqP~ 12 (13)
T PF04648_consen 1 WHWLRLSPGQPM 12 (13)
T ss_pred CcceeccCCCcC
Confidence 689999999954
No 148
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=63.62 E-value=7 Score=42.07 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=32.5
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
..+||+++++....|+ -||||..+.+.+.|.++|+||..
T Consensus 28 ~~pGQFv~l~~~~~~~--~rp~Si~~~~~~~g~i~~~vk~v 66 (752)
T PRK12778 28 RKPGQFVIVRVGEKGE--RIPLTIADADPEKGTITLVIQEV 66 (752)
T ss_pred CCCCeeEEEEeCCCCC--eeEEEeeeeCCCCCEEEEEEEEc
Confidence 4689999999865554 47999999888889999999874
No 149
>PLN02844 oxidoreductase/ferric-chelate reductase
Probab=63.04 E-value=11 Score=40.95 Aligned_cols=42 Identities=10% Similarity=0.099 Sum_probs=34.8
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCC-CCceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSD-EHHGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~-~~~g~~~llIK~Y 45 (314)
...+|||+.++....+...-||||-.|.+ .+++.+++.||..
T Consensus 338 ~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~ 380 (722)
T PLN02844 338 KYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCE 380 (722)
T ss_pred CcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeC
Confidence 45689999999887777788999999955 4677899999985
No 150
>PLN03115 ferredoxin--NADP(+) reductase; Provisional
Probab=61.13 E-value=12 Score=37.26 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=31.1
Q ss_pred CCcccceEEEEEE---eCCee-eEEeccCCCCCC----CceeEEEEeee
Q psy5567 4 GLPIGQHLSLSAT---INDEF-VARAYTPVTSDE----HHGYMDLVVKS 44 (314)
Q Consensus 4 glpvg~hv~~~~~---~~g~~-v~RpYTPvs~~~----~~g~~~llIK~ 44 (314)
....||+|.++.. .+|+. ..|+|+-.|.+. +.+.++|+||.
T Consensus 122 ~f~~GQfv~I~~~g~~~~g~p~~~R~YSIAS~p~~~~~~~~~l~L~Vk~ 170 (367)
T PLN03115 122 PYREGQSIGVIPDGIDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKR 170 (367)
T ss_pred CcCCCCEEEEEcCCcCCCCCcCceeeeecCCCCcccCCCCCEEEEEEEE
Confidence 4567999999863 45665 579999887652 35789999995
No 151
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=56.23 E-value=12 Score=33.91 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=17.4
Q ss_pred eeeeeeeeecCCC-CCceEEEEEEEEee
Q psy5567 191 FVARAYTPVTSDE-HHGYMDLVVKVYFK 217 (314)
Q Consensus 191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~ 217 (314)
...|.||++|++. ..+.++|+|.+...
T Consensus 177 l~PR~YSIsSS~~~~p~~v~ltv~vv~~ 204 (219)
T PF00667_consen 177 LQPRYYSISSSPLVHPNKVHLTVSVVEY 204 (219)
T ss_dssp ---EEEEB-S-TTTSTTEEEEEEEE-EE
T ss_pred CCCcceeecccccCCCCEEEEEEEEEEE
Confidence 4579999999885 46889999988743
No 152
>PRK00036 primosomal replication protein N; Reviewed
Probab=55.40 E-value=19 Score=29.94 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.1
Q ss_pred CCChhchHhhcCCCCCeEEEEcccc
Q psy5567 225 DGGKMSQFLENMKVGEPINVSGPRG 249 (314)
Q Consensus 225 ~~G~~S~~L~~l~~Gd~v~v~GP~G 249 (314)
-.|.++..+.++.+|..+.+.|-..
T Consensus 53 a~G~~a~~~~~l~~Gs~v~v~GFLa 77 (107)
T PRK00036 53 ALGDLALLLADTPLGTEMQVQGFLA 77 (107)
T ss_pred EEhhHHHHhcccCCCCEEEEEEEEE
Confidence 4589999999999999999998665
No 153
>PF01272 GreA_GreB: Transcription elongation factor, GreA/GreB, C-term; InterPro: IPR001437 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 2P4V_E 2ETN_B 3BMB_B 2PN0_D 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A.
Probab=54.87 E-value=18 Score=27.45 Aligned_cols=60 Identities=30% Similarity=0.438 Sum_probs=40.8
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC---CCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE---HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~---~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
....|..|.++.. +....+.|+++...+ +.+ ++- ...++.+-|-..++||.+.+..|.|.
T Consensus 5 ~V~~Gs~V~l~~~--~~~~~~~~~lv~~~~~~~~~~------~IS---------~~SPLG~ALlG~~~Gd~v~~~~~~g~ 67 (77)
T PF01272_consen 5 VVTIGSTVTLKDL--DDGEEETYTLVGPDEADPDNG------KIS---------IDSPLGKALLGKKVGDEVEVELPGGE 67 (77)
T ss_dssp B-STTEEEEEEET--TTTEEEEEEEE-GGG-BSTST------EEE---------TTSHHHHHHTT-BTT-EEEEEETTBE
T ss_pred EEEeCCEEEEEEC--CCCCEEEEEEEeEhHhCCcee------EEE---------ecCHHHHHhcCCCCCCEEEEEeCCce
Confidence 4678999988763 333567888875533 223 222 56889999999999999999999995
No 154
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=54.39 E-value=13 Score=33.80 Aligned_cols=36 Identities=22% Similarity=0.158 Sum_probs=27.9
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
...+|||+.++..-.+ .||||..+.+ +.++|.||..
T Consensus 23 ~~~pGQ~v~l~~~~~~---~~~~Si~s~~---~~l~~~v~~~ 58 (233)
T cd06220 23 DFKPGQFVMVWVPGVD---EIPMSLSYID---GPNSITVKKV 58 (233)
T ss_pred CCCCCceEEEEeCCCC---cceeEEecCC---CeEEEEEEec
Confidence 3568999999874222 3899988876 8899999985
No 155
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=49.87 E-value=17 Score=34.77 Aligned_cols=41 Identities=17% Similarity=0.142 Sum_probs=29.2
Q ss_pred CcccceEEEEEE-----eCCee-eEEeccCCCCCCC---ce-eEEEEeeee
Q psy5567 5 LPIGQHLSLSAT-----INDEF-VARAYTPVTSDEH---HG-YMDLVVKSV 45 (314)
Q Consensus 5 lpvg~hv~~~~~-----~~g~~-v~RpYTPvs~~~~---~g-~~~llIK~Y 45 (314)
.-.||++.+... .+|.. ..|+|+-.|.+.+ .+ .++|.||..
T Consensus 57 f~aGQy~~l~~~~~~~~~~g~~~~~R~YSIaS~p~~~~~~~~~lel~Vr~~ 107 (307)
T PLN03116 57 YWEGQSYGVIPPGTNPKKPGAPHNVRLYSIASTRYGDDFDGKTASLCVRRA 107 (307)
T ss_pred eecCceEeeeCCCCChhhcCCcCCceeEEecCCCCCcCCCCCEEEEEEEEE
Confidence 357999999753 23433 5799998887632 23 799999976
No 156
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=47.65 E-value=23 Score=39.60 Aligned_cols=39 Identities=26% Similarity=0.279 Sum_probs=31.8
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
..+||++.++....|+ .|||+..+.+.+.+.++|+||.+
T Consensus 677 ~~PGQFv~L~~~~~ge--~rP~SIas~~~~~g~i~l~Vk~v 715 (944)
T PRK12779 677 AQAGQFVRVLPWEKGE--LIPLTLADWDAEKGTIDLVVQGM 715 (944)
T ss_pred CCCCceEEEEeCCCCC--EEeEEccCCCCCCCEEEEEEEee
Confidence 4689999999765554 48999888777789999999864
No 157
>PLN02631 ferric-chelate reductase
Probab=46.30 E-value=25 Score=38.09 Aligned_cols=41 Identities=12% Similarity=0.136 Sum_probs=33.4
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCC-CceeEEEEeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDE-HHGYMDLVVKS 44 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~-~~g~~~llIK~ 44 (314)
...+|||+.++....+...-||||-.|.++ +++.++|.||.
T Consensus 334 ~~~PGQfvfL~~p~~s~~q~HPFSIaSsp~~~~~~L~~~IK~ 375 (699)
T PLN02631 334 HYTPTSILFLHVPSISKLQWHPFTITSSSNLEKDTLSVVIRR 375 (699)
T ss_pred cCCCCceEEEEeccCCccceEEEEEeccCCCCCCEEEEEEEc
Confidence 346799999998866666779999998764 46789999986
No 158
>COG0782 Uncharacterized conserved protein, YhbC family [Function unknown]
Probab=42.20 E-value=67 Score=27.95 Aligned_cols=61 Identities=25% Similarity=0.303 Sum_probs=43.2
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEcccc
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 249 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G 249 (314)
..-|+.|.+..... ...+.|+++...+.... .=|+. ...++.+-|-..++||.+.+.+|.|
T Consensus 79 V~~Gs~V~~~~~~~--ge~~~~~iVg~~ead~~---~~~IS---------~~SPig~aLlGk~vGd~v~v~~p~g 139 (151)
T COG0782 79 VTFGSTVTLENLDD--GEEVTYTIVGPDEADPA---KGKIS---------VDSPLGRALLGKKVGDTVEVNTPGG 139 (151)
T ss_pred EecCCEEEEEECCC--CCEEEEEEEcccccccc---cCcee---------ccCHHHHHHhCCCCCCEEEEecCCc
Confidence 56788888886433 45679999977653210 00111 3588999999999999999999965
No 159
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=39.21 E-value=71 Score=27.53 Aligned_cols=63 Identities=22% Similarity=0.241 Sum_probs=42.9
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
....|..|.+..... .....|+++...+..-... ++. ...++.+-|-..++||.+.+..|.|.
T Consensus 80 ~V~~Gs~V~l~~~~~--g~~~~~~lVgp~e~d~~~~---~IS---------~~SPlG~ALlG~~~Gd~v~v~~p~g~ 142 (151)
T TIGR01462 80 VVGFGSTVTIKDLDT--GEEETYTIVGSWEADPKEG---KIS---------IDSPLGKALIGKKVGDVVEVQTPKGE 142 (151)
T ss_pred EEeeCCEEEEEECCC--CCEEEEEEECchhcCccCC---eec---------CCCHHHHHHcCCCCCCEEEEEeCCCc
Confidence 356788888875322 3446888886544221111 222 45889999999999999999999995
No 160
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=35.52 E-value=87 Score=27.07 Aligned_cols=64 Identities=23% Similarity=0.282 Sum_probs=43.5
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL 251 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~ 251 (314)
....|..|.+.... ......|+++.....+ .-.- ++- ...++.+-|-..++||.+.+..|.|..
T Consensus 85 ~V~~Gs~V~l~~~~--~~~~~~~~lvg~~e~d-~~~~--~IS---------~~SPlG~aLlGk~~Gd~v~~~~p~g~~ 148 (157)
T PRK00226 85 KVKFGSTVTLKDLD--TDEEETYQIVGSDEAD-PKQG--KIS---------IESPIARALIGKKVGDTVEVTTPGGEY 148 (157)
T ss_pred EEecCCEEEEEECC--CCCEEEEEEEChhhcC-ccCC--eec---------cCChHHHHHhCCCCCCEEEEEcCCCcE
Confidence 45678888887532 2345688888544322 1111 121 458889999999999999999999953
No 161
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=35.07 E-value=86 Score=27.48 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=44.3
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEE-EEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCc
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD-LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL 251 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~-l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~ 251 (314)
...|..|.|... ++ ..+.|+++..+.... .. -.-++. ...++.+-|-..++||.|.+..|.|..
T Consensus 83 V~~Gs~Vtl~~~-~g--~~~~~~IVg~~e~d~-~~~~~~~IS---------~~SPlG~ALlGk~vGD~v~v~~p~g~~ 147 (158)
T PRK05892 83 LPGGTEVTLRFP-DG--EVETMHVISVVEETP-VGREAETLT---------ADSPLGQALAGHQAGDTVTYSTPQGPA 147 (158)
T ss_pred EEcCcEEEEEEC-CC--CEEEEEEeCchhcCc-ccccCCEEc---------cCCHHHHHHhCCCCCCEEEEEcCCCcE
Confidence 467899988752 33 567899997554311 00 011222 568899999999999999999999953
No 162
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=34.51 E-value=48 Score=37.32 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=30.1
Q ss_pred CcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeee
Q psy5567 5 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKS 44 (314)
Q Consensus 5 lpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~ 44 (314)
..+||+|.++..-.++ -||||..+.+.+.|.+.|+||.
T Consensus 28 ~~PGQFV~l~~~~~~e--rrplSIa~~~~~~g~i~l~vk~ 65 (1006)
T PRK12775 28 AEPGHFVMLRLYEGAE--RIPLTVADFDRKKGTITMVVQA 65 (1006)
T ss_pred CCCCeeEEEEeCCCCe--eEEEEecCcCCCCCEEEEEEEe
Confidence 4589999999754333 5899998877778999999986
No 163
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=34.12 E-value=4.4e+02 Score=26.31 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=16.4
Q ss_pred ChhchHhhcCCCCCeEEEEccc
Q psy5567 227 GKMSQFLENMKVGEPINVSGPR 248 (314)
Q Consensus 227 G~~S~~L~~l~~Gd~v~v~GP~ 248 (314)
|....-+..|++||.|-+.|-+
T Consensus 364 ~~~v~I~~GL~~Gd~VV~~G~~ 385 (409)
T PRK09783 364 QGVTAIRSGLAEGEKVVSSGLF 385 (409)
T ss_pred CCEEEEccCCCCCCEEEEeCce
Confidence 4445556899999999998743
No 164
>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=32.25 E-value=15 Score=29.47 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=0.0
Q ss_pred cCCcccceEEEEEEeCCee--eEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~--v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+|||++++..--... ---|||-.+.+. .+.+.|+||.+
T Consensus 28 ~~~~pGq~v~l~~p~~s~~~~q~HPFTIas~~~-~~~i~l~ik~~ 71 (105)
T PF08022_consen 28 FKWKPGQYVFLSFPSISKWFWQWHPFTIASSPE-DNSITLIIKAR 71 (105)
T ss_dssp ---------------------------------------------
T ss_pred CCCCCceEEEEEEcCcCcCcccccccEeeccCC-CCEEEEEEEeC
Confidence 4567899999999533322 447888877555 78899999885
No 165
>PF00667 FAD_binding_1: FAD binding domain; InterPro: IPR003097 This domain is found in sulphite reductase, NADPH cytochrome P450 reductase, nitric oxide synthase and methionine synthase reductase. Flavoprotein pyridine nucleotide cytochrome reductases [] (FPNCR) catalyse the interchange of reducing equivalents between one-electron carriers and the two-electron-carrying nicotinamide dinucleotides. The enzymes include ferredoxin:NADP+reductases (FNR) [], plant and fungal NAD(P)H:nitrate reductases [, ], NADH:cytochrome b5 reductases [], NADPH:P450 reductases [], NADPH:sulphite reductases [], nitric oxide synthases [], phthalate dioxygenase reductase [], and various other flavoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3QFR_B 3FJO_A 3QFC_B 3QE2_B 3QFS_A 3QFT_A 2B5O_B 2QTZ_A 2QTL_A 2BPO_B ....
Probab=30.44 E-value=70 Score=28.93 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=20.9
Q ss_pred CCceEEEEEEEEEEeCC-----CEEEEEEEcCCc
Q psy5567 90 PDVKVPLKLKEKIEINH-----DTRCFRFELPSA 118 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~ 118 (314)
....+.++|++.+.++. +++.++|++++.
T Consensus 5 ~~~p~~a~V~~~~~Lt~~~~~r~~~hieldl~~~ 38 (219)
T PF00667_consen 5 RKNPFPATVLENRRLTSPGSDRSTRHIELDLSDS 38 (219)
T ss_dssp TTB-EEEEEEEEEE-SSTTSSSEEEEEEEE-TTS
T ss_pred CCCCEEEEEEeEEEcCCCCCCceEEEEEEEeCCC
Confidence 45678899999999987 488888888754
No 166
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=28.45 E-value=1.4e+02 Score=26.05 Aligned_cols=60 Identities=22% Similarity=0.413 Sum_probs=42.4
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC---CCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE---HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~---~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
....|..|.|.. .++ ....|+++...+ ..+.+. ...++.+-|-..++||.+.+..|.|.
T Consensus 85 ~V~~Gs~V~l~d-~~~--~~~~~~iVgp~e~d~~~~~IS---------------~~SPlG~ALlGk~vGd~v~v~~p~g~ 146 (157)
T PRK01885 85 KVFFGAWVEIEN-EDG--EEKRFRIVGPDEIDGRKGYIS---------------IDSPMARALLKKEVGDEVTVNTPAGE 146 (157)
T ss_pred EEEeCCEEEEEE-CCC--CEEEEEEEChHHhCcCCCeEe---------------ccCHHHHHHhCCCCCCEEEEEcCCCc
Confidence 356788888875 233 456898876543 223221 23788899999999999999999995
Q ss_pred c
Q psy5567 251 L 251 (314)
Q Consensus 251 ~ 251 (314)
.
T Consensus 147 ~ 147 (157)
T PRK01885 147 A 147 (157)
T ss_pred E
Confidence 3
No 167
>TIGR03784 marine_sortase sortase, marine proteobacterial type. Members of this protein family are sortase enzymes, cysteine transpeptidases involved in protein sorting activities. Members of this family tend to be found in proteobacteria, rather than in Gram-positive bacteria where sortases attach proteins to the Gram-positive cell wall or participate in pilin cross-linking. Many species with this sortase appear to contain a signal target sequence, a protein with a Vault protein inter-alpha-trypsin domain (pfam08487) and a von Willebrand factor type A domain (pfam00092), encoded by an adjacent gene. These sortases are designated subfamily 6 according to Comfort and Clubb (2004).
Probab=26.28 E-value=2.3e+02 Score=25.22 Aligned_cols=32 Identities=22% Similarity=0.493 Sum_probs=23.0
Q ss_pred HhhcCCCCCeEEEEccccCc-cccCCcceeecc
Q psy5567 232 FLENMKVGEPINVSGPRGRL-AYLGNGEFHIRA 263 (314)
Q Consensus 232 ~L~~l~~Gd~v~v~GP~G~~-~y~~~g~f~l~~ 263 (314)
.|.+|++||.|.+.-..|+. .|+=.+...+++
T Consensus 105 ~L~~L~~GD~I~v~~~~g~~~~Y~V~~~~iV~~ 137 (174)
T TIGR03784 105 FLQELRPGDVIRLQTPDGQWQSYQVTATRVVDE 137 (174)
T ss_pred ChhhCCCCCEEEEEECCCeEEEEEEeEEEEECC
Confidence 47999999999999999863 565443334443
No 168
>PF12945 YcgR_2: Flagellar protein YcgR; PDB: 2RDE_B 1YLN_A 3KYG_A.
Probab=24.20 E-value=2.5e+02 Score=20.83 Aligned_cols=61 Identities=18% Similarity=0.125 Sum_probs=29.8
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEcccc
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 249 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G 249 (314)
+++||-+.+.+..++....+..|-+-.-.+++++-+.. | .......-++.|+.+.++--.+
T Consensus 1 L~iG~~i~i~i~~~~~~~~~y~S~v~g~~~~~~l~i~~------------P--~~~g~~~~l~~g~~v~v~~~~~ 61 (87)
T PF12945_consen 1 LKIGQKIEIEITNPTGEKGRYKSRVIGIDDDRYLIISM------------P--MEKGRPIPLREGEEVIVRFISE 61 (87)
T ss_dssp --TT-EEEEEEE-TTS-EEEEEEEEEEEETTTEEEEE-----------------CCHHHCCS-TT-EEEEEEEE-
T ss_pred CCCCCEEEEEEECCCCceEEEEEEEEEECCCCEEEEEc------------C--ccCCcEEeecCCCEEEEEEEEC
Confidence 36899999988544433344555443333323443332 2 3334456689999999986665
No 169
>PRK05753 nucleoside diphosphate kinase regulator; Provisional
Probab=24.02 E-value=1.5e+02 Score=25.25 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=41.8
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCC---CceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEH---HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~---~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
...|..|.+... +....+.|+++...+. .+.+. -..++.+-|-..++||.+.+..|.|.
T Consensus 55 V~~Gs~V~~~~~--~~~~~~~~~iVg~~Ead~~~~~IS---------------i~SPlG~ALlG~~~Gd~v~v~~p~G~ 116 (137)
T PRK05753 55 VTMNSRVRFRDL--SSGEERVRTLVYPADADDSEGQLS---------------VLAPVGAALLGLSVGQSIDWPLPGGK 116 (137)
T ss_pred EEeCCEEEEEEC--CCCCEEEEEEEChhHcCccCCcCc---------------ccCHHHHHHcCCCCCCEEEEECCCCC
Confidence 456788887653 3346679999865432 23221 24788888999999999999999993
No 170
>cd05829 Sortase_E Sortase E (SrtE) is a membrane transpeptidase found in gram-positive bacteria that cleaves surface proteins at a cell sorting motif and catalyzes a transpeptidation reaction in which the surface protein substrate is covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. The function of Sortase E is unknown. In two different sortase families, the N-terminus either functions as both a signal peptide for secretion and a stop-transfer signal for membrane anchoring, or it contains a signal peptide only and the C-terminus serves as a membrane anchor. Most gram-positive bacteria contain more than one sortase and it is thought that the different sortases anchor different surface protein classes. The sortase domain is a modified beta-barrel flanked by two (SrtA) or three (SrtB) short alpha-helices.
Probab=21.74 E-value=4.1e+02 Score=22.50 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=38.2
Q ss_pred eeeeeeecCCCCCceEEEEEEEEeecCCCCCCC-CChhchHhhcCCCCCeEEEEccccC-ccccCCcceeec
Q psy5567 193 ARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPD-GGKMSQFLENMKVGEPINVSGPRGR-LAYLGNGEFHIR 262 (314)
Q Consensus 193 ~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~-~G~~S~~L~~l~~Gd~v~v~GP~G~-~~y~~~g~f~l~ 262 (314)
...|.....|.+.|.+-|.=.+.. . ++..=..|.+|++||.|.+....|+ +.|+=.....+.
T Consensus 37 ~g~~~~~~~pG~~Gn~viaGH~~~--------~g~~~~F~~L~~l~~GD~I~v~~~~g~~~~Y~V~~~~~v~ 100 (144)
T cd05829 37 AGWYAGGPKPGEKGTAVLAGHVDS--------RGGPAVFFRLGDLRKGDKVEVTRADGQTATFRVDRVEVYP 100 (144)
T ss_pred eeEeCCCCCCCCCCCEEEEEecCC--------CCCChhhcchhcCCCCCEEEEEECCCCEEEEEEeEEEEEC
Confidence 345555555666677777766541 1 1233445799999999999997774 666543333333
No 171
>cd06166 Sortase_D_5 Sortase D (SrtD) is a membrane transpeptidase found in gram-positive bacteria that anchors surface proteins to peptidoglycans of the bacterial cell wall envelope. This involves a transpeptidation reaction in which the surface protein substrate is cleaved at the cell wall sorting signal and covalently linked to peptidoglycan for display on the bacterial surface. Sortases are grouped into different classes and subfamilies based on sequence, membrane topology, genomic positioning, and cleavage site preference. Class D sortases are further classified into subfamilies 4 and 5. This group contains a subset of Class D sortases belonging to subfamily-5, represented by Clostridium perfringens CPE2315. Subfamily-5 sortases recognize a nonstandard sorting signal (LAXTG) and have replaced Sortase A in some gram-postive bacteria. They may play a housekeeping role in the cell.
Probab=20.96 E-value=2.5e+02 Score=23.06 Aligned_cols=37 Identities=22% Similarity=0.420 Sum_probs=25.8
Q ss_pred ChhchHhhcCCCCCeEEEEccccCccccCCcceeecc
Q psy5567 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRA 263 (314)
Q Consensus 227 G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~ 263 (314)
|.+=..|.+|++||.|.+.-..+.+.|+=.+.+.+.+
T Consensus 56 ~~~F~~L~~l~~Gd~v~v~~~~~~~~Y~V~~~~~v~~ 92 (126)
T cd06166 56 GRIFNRLDEVEKGDEIKVTTKNGTYKYKITSIFVVEP 92 (126)
T ss_pred CcccCChHHCCCCCEEEEEECCEEEEEEEEEEEEECC
Confidence 4444558999999999999877777776443444444
No 172
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=20.64 E-value=38 Score=30.33 Aligned_cols=14 Identities=50% Similarity=0.973 Sum_probs=12.9
Q ss_pred CeEEEEEcCcCHHH
Q psy5567 276 TQLSMIAGGTGITP 289 (314)
Q Consensus 276 ~~vvmIAgGtGItP 289 (314)
-++++..||||+||
T Consensus 68 ~DvvlttGGTG~t~ 81 (169)
T COG0521 68 VDVVLTTGGTGITP 81 (169)
T ss_pred CCEEEEcCCccCCC
Confidence 57999999999997
No 173
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=20.59 E-value=4.5e+02 Score=26.27 Aligned_cols=42 Identities=21% Similarity=0.476 Sum_probs=31.4
Q ss_pred eeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 193 ARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 193 ~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
.|||-.. -|.+.=+|+. .|..++||+.|+.|++|.+-.-.|+
T Consensus 222 ~RPFRVN-----AGaVhaYv~~-----------pgg~T~YLsEL~sG~eVlvVd~~G~ 263 (344)
T PRK02290 222 SRPFRVN-----AGAVHAYVRV-----------PGDKTRYLSELRSGDEVLVVDADGN 263 (344)
T ss_pred CCCeeEe-----cCcceeEEEc-----------CCCcchhhHhhcCCCEEEEEeCCCC
Confidence 3555552 2555566664 3888999999999999999988884
No 174
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=20.51 E-value=4.1e+02 Score=26.62 Aligned_cols=25 Identities=24% Similarity=0.573 Sum_probs=22.5
Q ss_pred CChhchHhhcCCCCCeEEEEccccC
Q psy5567 226 GGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 226 ~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
.|.-++||+.|+.|++|.+....|+
T Consensus 249 pg~kT~YLSEL~sG~~VlvVd~~G~ 273 (354)
T PF01959_consen 249 PGGKTRYLSELRSGDEVLVVDADGR 273 (354)
T ss_pred CCCceeehhhhcCCCEEEEEeCCCC
Confidence 3888999999999999999988884
Done!