Query psy5567
Match_columns 314
No_of_seqs 314 out of 1777
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:48:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5567.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5567hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1umk_A B5R, NADH-cytochrome B5 100.0 3.4E-31 1.2E-35 243.1 20.1 182 81-314 4-185 (275)
2 2cnd_A NADH-dependent nitrate 100.0 1.5E-29 5.3E-34 231.2 20.2 171 86-314 5-176 (270)
3 2eix_A NADH-cytochrome B5 redu 100.0 1.5E-28 5.3E-33 221.3 19.3 153 85-314 3-155 (243)
4 2r6h_A NADH:ubiquinone oxidore 99.9 4.5E-25 1.5E-29 203.5 18.7 157 87-314 4-195 (290)
5 2pia_A Phthalate dioxygenase r 99.9 2.8E-25 9.5E-30 209.8 17.2 145 87-314 2-148 (321)
6 4eh1_A Flavohemoprotein; struc 99.9 5.9E-25 2E-29 197.5 18.2 147 92-314 2-151 (243)
7 1fdr_A Flavodoxin reductase; f 99.9 5E-25 1.7E-29 198.9 17.2 141 92-314 3-144 (248)
8 1cqx_A Flavohemoprotein; globi 99.9 1.2E-24 4.2E-29 210.4 19.4 150 90-314 151-303 (403)
9 1gvh_A Flavohemoprotein; oxido 99.9 8.5E-25 2.9E-29 211.1 17.9 146 90-314 149-297 (396)
10 3vo2_A Putative uncharacterize 99.9 1.5E-24 5.2E-29 203.6 18.5 162 83-314 23-201 (310)
11 1tvc_A Methane monooxygenase c 99.9 4.2E-25 1.4E-29 200.2 13.0 146 89-314 6-155 (250)
12 1ep3_B Dihydroorotate dehydrog 99.9 8.4E-25 2.9E-29 200.3 14.8 142 93-314 5-146 (262)
13 2qdx_A Ferredoxin reductase; o 99.9 9.8E-25 3.3E-29 198.5 14.3 142 92-314 2-144 (257)
14 4fk8_A Ferredoxin--NADP reduct 99.9 8.8E-25 3E-29 200.3 14.0 143 91-314 17-160 (271)
15 1krh_A Benzoate 1,2-dioxygenas 99.9 5.2E-24 1.8E-28 201.5 17.3 142 91-314 106-248 (338)
16 3lo8_A Ferredoxin--NADP reduct 99.9 6E-24 2.1E-28 198.9 17.4 165 81-314 16-203 (311)
17 1qfj_A Protein (flavin reducta 99.9 2.4E-24 8.1E-29 192.6 13.5 138 93-314 2-140 (232)
18 2bgi_A Ferredoxin-NADP(H) redu 99.9 4.3E-24 1.5E-28 196.6 15.6 142 92-314 15-158 (272)
19 4g1v_A Flavohemoglobin; three 99.9 1.3E-23 4.4E-28 203.4 17.8 160 90-314 146-310 (399)
20 1fnb_A Ferredoxin-NADP+ reduct 99.9 4.3E-23 1.5E-27 193.6 18.5 161 84-314 28-205 (314)
21 2gpj_A Siderophore-interacting 99.9 4E-23 1.4E-27 189.0 15.5 143 88-314 3-147 (252)
22 2b5o_A FNR, ferredoxin--NADP r 99.9 1.1E-22 3.8E-27 198.6 17.9 163 82-314 111-293 (402)
23 3jqq_A Ferredoxin NADP reducta 99.9 1.1E-22 3.8E-27 192.2 16.7 157 86-314 8-218 (316)
24 2bmw_A Ferredoxin--NADP reduct 99.9 2E-22 6.9E-27 187.7 18.1 161 85-314 13-195 (304)
25 2rc5_A Ferredoxin-NADP reducta 99.9 1.5E-22 5.1E-27 189.7 17.0 162 85-314 13-206 (314)
26 1ddg_A Sulfite reductase (NADP 99.7 1.7E-18 5.9E-23 167.9 5.1 119 174-314 145-265 (374)
27 4dql_A Bifunctional P-450/NADP 99.6 8.6E-17 3E-21 157.1 5.9 120 174-314 156-282 (393)
28 1f20_A Nitric-oxide synthase; 99.6 3.3E-15 1.1E-19 147.4 8.1 107 191-314 208-322 (435)
29 3qfs_A CPR, P450R, NADPH--cyto 99.5 2.9E-14 9.8E-19 142.0 9.5 108 190-314 231-348 (458)
30 2bpo_A CPR, P450R, NADPH-cytoc 99.5 1.2E-14 3.9E-19 151.0 6.2 128 175-314 414-572 (682)
31 3qe2_A CPR, P450R, NADPH--cyto 99.5 4.8E-14 1.6E-18 144.9 10.0 107 191-314 392-508 (618)
32 1tll_A Nitric-oxide synthase, 99.5 3.5E-14 1.2E-18 147.6 8.3 118 177-314 418-543 (688)
33 2qtl_A MSR;, methionine syntha 99.5 3.1E-14 1.1E-18 144.3 7.7 108 191-314 289-422 (539)
34 3lrx_A Putative hydrogenase; a 99.1 7.2E-11 2.5E-15 100.9 4.9 57 236-314 1-58 (158)
35 3lyu_A Putative hydrogenase; t 98.8 3.2E-09 1.1E-13 89.2 5.1 51 242-314 3-53 (142)
36 2eix_A NADH-cytochrome B5 redu 97.4 0.00016 5.5E-09 64.1 6.1 47 3-49 40-86 (243)
37 1umk_A B5R, NADH-cytochrome B5 97.0 0.00076 2.6E-08 60.9 6.1 43 3-45 45-87 (275)
38 2cnd_A NADH-dependent nitrate 96.8 0.0015 5E-08 58.8 6.1 43 3-45 41-83 (270)
39 1fdr_A Flavodoxin reductase; f 96.5 0.002 6.8E-08 57.2 4.5 46 3-49 29-74 (248)
40 2qdx_A Ferredoxin reductase; o 96.5 0.0034 1.2E-07 56.1 5.8 46 3-49 29-74 (257)
41 2bgi_A Ferredoxin-NADP(H) redu 96.2 0.0044 1.5E-07 56.1 5.2 45 3-48 42-87 (272)
42 4fk8_A Ferredoxin--NADP reduct 96.1 0.0065 2.2E-07 54.7 5.5 46 3-49 45-90 (271)
43 1tvc_A Methane monooxygenase c 95.6 0.005 1.7E-07 54.8 2.7 45 3-49 42-86 (250)
44 1ep3_B Dihydroorotate dehydrog 95.6 0.0032 1.1E-07 56.8 1.2 46 4-49 33-78 (262)
45 4eh1_A Flavohemoprotein; struc 95.3 0.013 4.4E-07 51.5 4.2 42 3-45 32-75 (243)
46 1gvh_A Flavohemoprotein; oxido 95.1 0.016 5.4E-07 55.2 4.5 45 3-48 181-227 (396)
47 1qfj_A Protein (flavin reducta 95.1 0.012 4.1E-07 51.5 3.3 44 3-49 28-71 (232)
48 2r6h_A NADH:ubiquinone oxidore 95.1 0.016 5.3E-07 52.5 4.1 43 3-45 37-108 (290)
49 1cqx_A Flavohemoprotein; globi 95.0 0.022 7.7E-07 54.3 5.1 43 3-46 183-227 (403)
50 2pia_A Phthalate dioxygenase r 94.4 0.036 1.2E-06 51.5 4.8 43 4-49 38-80 (321)
51 1krh_A Benzoate 1,2-dioxygenas 94.0 0.035 1.2E-06 51.6 4.0 44 3-49 137-180 (338)
52 4g1v_A Flavohemoglobin; three 93.0 0.069 2.3E-06 50.9 4.1 42 4-46 183-228 (399)
53 3lo8_A Ferredoxin--NADP reduct 92.5 0.063 2.1E-06 49.3 3.0 43 3-45 59-111 (311)
54 3vo2_A Putative uncharacterize 92.4 0.067 2.3E-06 49.3 3.0 44 3-46 64-115 (310)
55 2gpj_A Siderophore-interacting 89.6 0.16 5.6E-06 45.4 2.7 41 5-47 39-80 (252)
56 2rc5_A Ferredoxin-NADP reducta 81.9 0.5 1.7E-05 43.2 1.7 44 3-46 62-120 (314)
57 1fnb_A Ferredoxin-NADP+ reduct 81.6 0.77 2.6E-05 42.0 2.9 43 3-45 68-118 (314)
58 2b5o_A FNR, ferredoxin--NADP r 80.1 1.4 5E-05 42.1 4.4 42 3-44 154-203 (402)
59 3jqq_A Ferredoxin NADP reducta 78.1 0.69 2.3E-05 42.8 1.3 29 15-44 92-120 (316)
60 2bmw_A Ferredoxin--NADP reduct 76.2 1.9 6.4E-05 39.1 3.7 42 3-44 53-102 (304)
61 2f23_A Anti-cleavage anti-GREA 59.8 8.5 0.00029 32.2 4.1 62 174-250 82-146 (156)
62 1ddg_A Sulfite reductase (NADP 52.7 1.5 5.2E-05 41.8 -2.0 38 4-45 145-183 (374)
63 2pn0_A Prokaryotic transcripti 49.9 26 0.00087 28.8 5.4 62 174-249 56-117 (141)
64 3bmb_A Regulator of nucleoside 45.3 25 0.00085 28.6 4.6 64 174-251 53-117 (136)
65 1grj_A GREA protein; transcrip 44.3 20 0.00069 30.0 4.0 63 174-250 85-147 (158)
66 2p4v_A Transcription elongatio 38.9 24 0.00083 29.6 3.6 62 174-250 84-145 (158)
67 1yfb_A Transition state regula 29.2 65 0.0022 22.6 4.0 26 2-28 33-58 (59)
68 2k50_A Replication factor A re 24.8 1.9E+02 0.0065 21.9 6.5 17 232-248 67-83 (115)
No 1
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=99.97 E-value=3.4e-31 Score=243.15 Aligned_cols=182 Identities=56% Similarity=0.982 Sum_probs=153.5
Q ss_pred ccccccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeecc
Q psy5567 81 KKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVS 160 (314)
Q Consensus 81 ~~~~~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (314)
+++.++++||..+++++|++++.++++++.|+|++++.....
T Consensus 4 ~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~-------------------------------------- 45 (275)
T 1umk_A 4 STPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHIL-------------------------------------- 45 (275)
T ss_dssp -CCCBSCCCTTCCEEEEEEEEEECSSSEEEEEEECSSTTCBC--------------------------------------
T ss_pred cCCCccccCCCccEEEEEEEEEEcCCCeEEEEEEcCCccccc--------------------------------------
Confidence 345668999999999999999999999999999987653222
Q ss_pred CCCCCCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCC
Q psy5567 161 APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGE 240 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd 240 (314)
.+.||||+.|.++.++....|+||+++.+.+.+.++|+||++..+.+++++++|.+|+||+++++||
T Consensus 46 -------------~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~~G~~S~~L~~l~~Gd 112 (275)
T 1umk_A 46 -------------GLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGD 112 (275)
T ss_dssp -------------CCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECCCSSSBTTBTTCCHHHHHHHHCCTTC
T ss_pred -------------CCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEeccCcccccCCCChhHHHHhcCCCCC
Confidence 6899999999998778788999999999887899999999886666777778899999999999999
Q ss_pred eEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 241 PINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 241 ~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++||+|.|.+.+||.|.+++ +.+.+.+....++++|||||||||||++|++++..+..+..+++|+|++|
T Consensus 113 ~v~v~gP~G~~~~~~~~~f~l~~-~~~~~~~~~~~~~~vliagGtGIaP~~~~l~~l~~~~~~~~~v~l~~~~r 185 (275)
T 1umk_A 113 TIEFRGPSGLLVYQGKGKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 185 (275)
T ss_dssp EEEEEEEECSEEEEETTEEEECS-STTSCCEEEECSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEES
T ss_pred EEEEEcCccceEecCCccccccc-cccccccccCCceEEEEecCccHhHHHHHHHHHHhCCCCCcEEEEEEEcC
Confidence 99999999999998888888864 11111112246899999999999999999999987643468999999987
No 2
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=99.97 E-value=1.5e-29 Score=231.18 Aligned_cols=171 Identities=46% Similarity=0.857 Sum_probs=143.8
Q ss_pred cccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCC
Q psy5567 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESE 165 (314)
Q Consensus 86 ~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
.+.+|..+.+++|++++.++++++.|+|+.++.....
T Consensus 5 ~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------------- 41 (270)
T 2cnd_A 5 ALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQVL------------------------------------------- 41 (270)
T ss_dssp ------CCEEEEEEEEEEEETTEEEEEEECSSTTCCC-------------------------------------------
T ss_pred ccCCCCceEEEEEEEEEEeCCCeEEEEEECCCCcccc-------------------------------------------
Confidence 3448888999999999999999999999988653222
Q ss_pred CCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE
Q psy5567 166 PPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS 245 (314)
Q Consensus 166 ~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~ 245 (314)
.+.||||+.|.++.++....|+||+++.+.+.+.++|+||++.++.|++++++|.+|+||+++++||.|.++
T Consensus 42 --------~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~~~~~~~~~~~~G~~s~~l~~l~~Gd~v~v~ 113 (270)
T 2cnd_A 42 --------GLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVK 113 (270)
T ss_dssp --------CCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCCSSCBTTBTTCCHHHHHHHHCCTTCEEEEE
T ss_pred --------CCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEeccCcccccCCCCchhhHHhcCCCCCEEEEE
Confidence 789999999998877878899999999988779999999988666677777789999999999999999999
Q ss_pred ccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC-CCCccEEEEEEeC
Q psy5567 246 GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTKMSLIFANQ 314 (314)
Q Consensus 246 GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~-~~~~~v~Li~~~r 314 (314)
||+|.|.|.++|.|.++.. ....++++|||||||||||++|++++..+. .+..+++|+|++|
T Consensus 114 gP~G~~~~~~~g~f~l~~~-------~~~~~~~vliagGtGiaP~~~~l~~l~~~~~~~~~~v~l~~~~r 176 (270)
T 2cnd_A 114 GPLGHVEYTGRGSFVINGK-------QRNARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176 (270)
T ss_dssp EEECSEECCSSSCEEETTE-------EECCSEEEEEEEGGGHHHHHHHHHHHHHTTTTCCCEEEEEEEES
T ss_pred CCcccceeccccceeccCC-------cccCCEEEEEeccccHHHHHHHHHHHHhcCCCCCcEEEEEEEcC
Confidence 9999999998889998740 013689999999999999999999998762 2357999999987
No 3
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=99.96 E-value=1.5e-28 Score=221.30 Aligned_cols=153 Identities=48% Similarity=0.867 Sum_probs=133.4
Q ss_pred ccccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCC
Q psy5567 85 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPES 164 (314)
Q Consensus 85 ~~~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (314)
++.++|..|.+++|++++.++++++.|+|++++.....
T Consensus 3 ~~~l~~~~~~~~~v~~~~~~t~~~~~~~l~~~~~~~~~------------------------------------------ 40 (243)
T 2eix_A 3 EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVV------------------------------------------ 40 (243)
T ss_dssp CCSCCSSSCEEEEEEEEEEEETTEEEEEEECSSTTCCC------------------------------------------
T ss_pred cccCCCCceEEEEEEEEEEeCCCeEEEEEEcCCCCccc------------------------------------------
Confidence 46789999999999999999999999999987653222
Q ss_pred CCCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEE
Q psy5567 165 EPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINV 244 (314)
Q Consensus 165 ~~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v 244 (314)
.+.||||+.|.++.++....|+|||++.+.+.+.++|+||++ ++|.+|+||+++++||.|.+
T Consensus 41 ---------~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~---------~~G~~S~~l~~l~~Gd~v~v 102 (243)
T 2eix_A 41 ---------GLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVY---------EKGQMSQYIDHLNPGDFLQV 102 (243)
T ss_dssp ---------CCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECC---------TTCHHHHHHHTCCTTCEEEE
T ss_pred ---------CcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEc---------CCCCcchHhhcCCCCCEEEE
Confidence 689999999999877777899999999988789999999987 78999999999999999999
Q ss_pred EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+||+|. |.++. ...++++|||||||||||++|++++..++.+..+++|+|++|
T Consensus 103 ~gP~G~--------f~~~~---------~~~~~~vliagG~GiaP~~~~l~~l~~~~~~~~~v~l~~~~r 155 (243)
T 2eix_A 103 RGPKGQ--------FDYKP---------NMVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANV 155 (243)
T ss_dssp EEEECS--------CCCCT---------TSSSEEEEEEEGGGHHHHHHHHHHHHTCTTCCCEEEEEEEEE
T ss_pred ECCeEE--------EEeCC---------CCCcEEEEEecCccHHHHHHHHHHHHhCCCCCcEEEEEEEcC
Confidence 999995 44433 236899999999999999999999987643467999999986
No 4
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=99.93 E-value=4.5e-25 Score=203.53 Aligned_cols=157 Identities=20% Similarity=0.334 Sum_probs=123.8
Q ss_pred ccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCC
Q psy5567 87 LVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEP 166 (314)
Q Consensus 87 ~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
++++ ...+++|++++.+++++++|+|+.++... .
T Consensus 4 ~~~~-~~~~~~V~~~~~~t~~~~~l~l~~~~~~~-~-------------------------------------------- 37 (290)
T 2r6h_A 4 VFGV-KEWECEVLSNKNVSTFIKEFVVKLPEGET-M-------------------------------------------- 37 (290)
T ss_dssp --CC-CEEEEEEEEEEESSSSEEEEEEECSTTCC-C--------------------------------------------
T ss_pred cccc-eEEEEEEEEeeecCCCeEEEEEEcCCCCc-c--------------------------------------------
Confidence 3444 46789999999999999999999876421 1
Q ss_pred CcccccCCCCCCcEEEEEeee-----------------------------CCceeeeeeeeecCCCCCceEEEEEEEEee
Q psy5567 167 PFHFAWLGLPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217 (314)
Q Consensus 167 ~~~~~~~~~~~GQ~v~l~~~~-----------------------------~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~ 217 (314)
.+.||||+.|.++. ++....|+||+++.+.+.+.++|+||++.+
T Consensus 38 -------~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~~~ 110 (290)
T 2r6h_A 38 -------NFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIATP 110 (290)
T ss_dssp -------CCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEEECCSCTTCCSEEEEEEECCCC
T ss_pred -------ccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceeeeccCCCCCCCEEEEEEEEecc
Confidence 67999999999863 234678999999999888999999997310
Q ss_pred ---cCCC---CCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHH
Q psy5567 218 ---NVHP---KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPML 291 (314)
Q Consensus 218 ---~~~~---~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l 291 (314)
+.++ +..++|.+|+||+++++||.|.++||+|. |.+.. ..++++|||||||||||+
T Consensus 111 ~~~~~~~~~~~~~~~G~~S~~l~~l~~Gd~v~v~gP~G~--------f~~~~----------~~~~~vliagGtGitP~~ 172 (290)
T 2r6h_A 111 PFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGD--------FHIQD----------TDAEMLYIGGGAGMAPLR 172 (290)
T ss_dssp CEETTTTEECTTCCCCHHHHHHTTCCTTCEEEEEEEECC--------CCCCS----------SSCEEEEEEEGGGHHHHH
T ss_pred ccccccccccccCCCcchhhHHhcCCCCCEEEEEecccC--------CcCCC----------CCCeEEEEECccCHHHHH
Confidence 0000 01257999999999999999999999995 44332 468999999999999999
Q ss_pred HHHHHHhhCCCCCccEEEEEEeC
Q psy5567 292 QLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 292 ~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+|+++++.+..+..+++|+|++|
T Consensus 173 s~l~~~~~~~~~~~~v~l~~~~r 195 (290)
T 2r6h_A 173 AQILHLFRTLKTGRKVSYWYGAR 195 (290)
T ss_dssp HHHHHHHHTSCCCSCEEEEEEES
T ss_pred HHHHHHHHhcCCCCcEEEEEEcC
Confidence 99998887643457999999987
No 5
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.93 E-value=2.8e-25 Score=209.81 Aligned_cols=145 Identities=23% Similarity=0.399 Sum_probs=125.1
Q ss_pred ccCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCC
Q psy5567 87 LVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEP 166 (314)
Q Consensus 87 ~l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (314)
..++..|++++|++++.++++++.|+|+.++.....
T Consensus 2 ~p~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~-------------------------------------------- 37 (321)
T 2pia_A 2 TPQEDGFLRLKIASKEKIARDIWSFELTDPQGAPLP-------------------------------------------- 37 (321)
T ss_dssp CTTTTTCEEEEEEEEEEEETTEEEEEEECTTCCCCC--------------------------------------------
T ss_pred CCCCCCcEEEEEEEEEEcCCCEEEEEEEcCCCCcCC--------------------------------------------
Confidence 356778999999999999999999999987653211
Q ss_pred CcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCCh-hchHhh-cCCCCCeEEE
Q psy5567 167 PFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGK-MSQFLE-NMKVGEPINV 244 (314)
Q Consensus 167 ~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~-~S~~L~-~l~~Gd~v~v 244 (314)
.+.||||+.|+++ ++ ..|+||+++.+.+.+.++|.||++ ++|. +|+||+ ++++||.|.+
T Consensus 38 -------~~~pGQ~v~l~~~-~g--~~R~ySi~s~~~~~~~l~i~Vk~~---------~~G~g~S~~L~~~l~~Gd~v~v 98 (321)
T 2pia_A 38 -------PFEAGANLTVAVP-NG--SRRTYSLCNDSQERNRYVIAVKRD---------SNGRGGSISFIDDTSEGDAVEV 98 (321)
T ss_dssp -------CCCTTCEEEEECT-TS--CEEEEECCSCTTCCSEEEEEEECC---------TTSCSHHHHHHHSCCTTCEEEE
T ss_pred -------CCCCCCEEEEECC-CC--CcEEEEeCCCCCCCCeEEEEEEEe---------cCCcchhHHHHhcCCCCCEEEE
Confidence 6799999999986 23 889999999998888999999987 6787 999997 9999999999
Q ss_pred EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+||+|. |.++. ..++++|||||||||||++|++++..++ ..+++|+|++|
T Consensus 99 ~gP~g~--------f~l~~----------~~~~~vliagG~GItP~~s~l~~l~~~~--~~~v~l~~~~r 148 (321)
T 2pia_A 99 SLPRNE--------FPLDK----------RAKSFILVAGGIGITPMLSMARQLRAEG--LRSFRLYYLTR 148 (321)
T ss_dssp CCCBCC--------SCCCT----------TCSEEEEEEEGGGHHHHHHHHHHHHHHC--SSEEEEEEEES
T ss_pred eCCccc--------cccCC----------CCCCEEEEEecccHhHHHHHHHHHHHcC--CCcEEEEEEEC
Confidence 999994 55544 3679999999999999999999998865 26899999987
No 6
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=99.93 E-value=5.9e-25 Score=197.54 Aligned_cols=147 Identities=20% Similarity=0.300 Sum_probs=121.4
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
.|.+++|++++.++++++.|+|+.++.....
T Consensus 2 ~~~~~~V~~~~~~~~~~~~~~l~~~~~~~~~------------------------------------------------- 32 (243)
T 4eh1_A 2 DGRTFVVREKQVESAYVTSFVLVPADGGAVL------------------------------------------------- 32 (243)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSCSCCC-------------------------------------------------
T ss_pred CcEEEEEEEEEEcCCCeEEEEEEeCCCCcCC-------------------------------------------------
Confidence 5889999999999999999999987653222
Q ss_pred cCCCCCCcEEEEEeeeCCce--eeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEccc
Q psy5567 172 WLGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSGPR 248 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~~~--~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~GP~ 248 (314)
.+.||||+.|.++.++.. ..|+||+++.+.+ +.++|+||.+. ...+++|.+|+||+ ++++||.|.++||+
T Consensus 33 --~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~~----~~~~~~G~~S~~l~~~l~~G~~v~v~gP~ 105 (243)
T 4eh1_A 33 --DYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG-REYRISVKREG----VGSDNPGLVSHYLHNNVKVGDSVKLYAPA 105 (243)
T ss_dssp --CCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS-SCEEEEEECTT----TTSSSCCHHHHHHHHHCCTTCEEEEEEEE
T ss_pred --CcCCCCEEEEEEecCCCccccceeeEeccCCCC-CeEEEEEEEee----cCCCCCCeehhHHHhcCCCCCEEEEEccC
Confidence 689999999999866543 4799999998765 78999999741 11225699999996 79999999999999
Q ss_pred cCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 249 GRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 249 G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|. |.++. ..++++|||||||||||++|++++..++. .. ++|+|++|
T Consensus 106 G~--------~~~~~----------~~~~~vliagGtGitp~~~~l~~l~~~~~-~~-v~l~~~~r 151 (243)
T 4eh1_A 106 GD--------FFYVE----------RERPVVLISAGVGATPMQAILHTLAKQNK-SG-VTYLYACN 151 (243)
T ss_dssp CS--------CCCCC----------CSSCEEEEEEGGGHHHHHHHHHHHHHTTC-CS-EEEEEEES
T ss_pred cc--------cCcCC----------CCCCEEEEEccccHHHHHHHHHHHHHcCC-Ce-EEEEEEeC
Confidence 95 44432 46899999999999999999999998764 23 99999986
No 7
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=99.93 E-value=5e-25 Score=198.91 Aligned_cols=141 Identities=25% Similarity=0.307 Sum_probs=118.7
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
.|.+++|++++.++++++.|+|+ ++. .
T Consensus 3 ~~~~~~V~~~~~~~~~~~~l~l~-~~~---~------------------------------------------------- 29 (248)
T 1fdr_A 3 DWVTGKVTKVQNWTDALFSLTVH-APV---L------------------------------------------------- 29 (248)
T ss_dssp CEEEEEEEEEEECSSSEEEEEEE-CCC---C-------------------------------------------------
T ss_pred ceEEEEEEEEEEcCCCEEEEEEe-CCC---C-------------------------------------------------
Confidence 48899999999999999999996 321 2
Q ss_pred cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-ccccC
Q psy5567 172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGR 250 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~ 250 (314)
.+.||||+.|.++.++....|+||+++.+.+ +.++|+||.+ ++|.+|+||+++++||.|.++ ||+|.
T Consensus 30 --~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~l~~~v~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G~ 97 (248)
T 1fdr_A 30 --PFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTV---------PDGKLSPRLAALKPGDEVQVVSEAAGF 97 (248)
T ss_dssp --CCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECC---------TTCSSHHHHHTCCTTCEEEEESSCBCC
T ss_pred --CcCCCCcEEEEccCCCCeeeeeecccCCCCC-CcEEEEEEEe---------CCCchhhHHHhCCCcCEEEEecCCcce
Confidence 6799999999997666678899999998876 8899999987 789999999999999999999 99994
Q ss_pred ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.++.. ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus 98 --------f~l~~~--------~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r 144 (248)
T 1fdr_A 98 --------FVLDEV--------PHCETLWMLATGTAIGPYLSILRLGKDLDR-FKNLVLVHAAR 144 (248)
T ss_dssp --------CSGGGS--------CCCSEEEEEEEGGGGHHHHHHHHHCCSCTT-CSEEEEEEEES
T ss_pred --------eEcCCC--------CCCceEEEEEecccHHHHHHHHHHHHhhCC-CCcEEEEEEcC
Confidence 555430 126899999999999999999999876542 57899999986
No 8
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=99.92 E-value=1.2e-24 Score=210.39 Aligned_cols=150 Identities=20% Similarity=0.283 Sum_probs=123.6
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
...|++++|++++.++++++.|+|++++.....
T Consensus 151 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~----------------------------------------------- 183 (403)
T 1cqx_A 151 WKGWRTFVIREKRPESDVITSFILEPADGGPVV----------------------------------------------- 183 (403)
T ss_dssp CSSCEEEEEEEEEECSSSEEEEEEEETTCCCCC-----------------------------------------------
T ss_pred CCcceeEEEEEEEEcCCCeEEEEEEeCCCCcCC-----------------------------------------------
Confidence 467899999999999999999999987653222
Q ss_pred cccCCCCCCcEEEEEeeeCCc--eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEEEc
Q psy5567 170 FAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINVSG 246 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~~~--~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v~G 246 (314)
.+.||||+.|.++.++. ...|+||+++.+. .++++|+||++. ++++ ++|.+|+||+ ++++||.|.++|
T Consensus 184 ----~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~---~~~~-~~G~~S~~L~~~l~~Gd~v~v~g 254 (403)
T 1cqx_A 184 ----NFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN-GRTYRISVKREG---GGPQ-PPGYVSNLLHDHVNVGDQVKLAA 254 (403)
T ss_dssp ----CCCTTCEEEEEEEETTTTEEEEEEEECCSCCC-SSCEEEEEECCC---BTTB-CCCHHHHHHHHHCCTTCEEEECC
T ss_pred ----CCCCCCEEEEEEecCCCCcceeecceecCCCC-CCeEEEEEEECC---CCCC-CCCeehHHHhhCCCCCCEEEEec
Confidence 68999999999986553 5689999999886 589999999760 0111 2699999997 699999999999
Q ss_pred cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.|. |.++. ...++++|||||||||||++|++++.. + +.++++|+|++|
T Consensus 255 P~G~--------f~l~~---------~~~~~~vlIagGtGitP~~s~l~~l~~-~-~~~~v~l~~~~r 303 (403)
T 1cqx_A 255 PYGS--------FHIDV---------DAKTPIVLISGGVGLTPMVSMLKVALQ-A-PPRQVVFVHGAR 303 (403)
T ss_dssp CBCS--------CSCCT---------TCCSCEEEEESSCCHHHHHHHHHHHTC-S-SCCCEEEEEEES
T ss_pred CccC--------cccCC---------CCCCCEEEEEecccHhhHHHHHHHHHh-C-CCCcEEEEEEeC
Confidence 9994 55532 246889999999999999999999987 2 357899999987
No 9
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=99.92 E-value=8.5e-25 Score=211.06 Aligned_cols=146 Identities=21% Similarity=0.316 Sum_probs=124.1
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
...|.+++|++++.+|++++.|+|++++.....
T Consensus 149 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~----------------------------------------------- 181 (396)
T 1gvh_A 149 WEGTRDFRIVAKTPRSALITSFELEPVDGGAVA----------------------------------------------- 181 (396)
T ss_dssp CSSEEEEEEEEEEECSSSEEEEEEEETTCCCCC-----------------------------------------------
T ss_pred CCCcEEEEEEEEEEcCCCeEEEEEEeCCCCcCC-----------------------------------------------
Confidence 357899999999999999999999987653222
Q ss_pred cccCCCCCCcEEEEEeeeCCc--eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEc
Q psy5567 170 FAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSG 246 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~~~--~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~G 246 (314)
.+.||||+.|.++.++. ...|+||+++.+. .+.++|+||++ ++|.+|+||++ +++||.|.++|
T Consensus 182 ----~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~---------~~G~~S~~L~~~l~~Gd~v~v~g 247 (396)
T 1gvh_A 182 ----EYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD-GKGYRIAVKRE---------EGGQVSNWLHNHANVGDVVKLVA 247 (396)
T ss_dssp ----CCCTTCEEEEEECCTTCSSCEEEEEECCSCCC-SSCEEEEEECC---------TTCHHHHHHHHTCCTTCEEEEEE
T ss_pred ----CCCCCCeEEEEecCCCCccceeecceeccCCC-CCeEEEEEEEc---------CCCcchHHHHhcCCCCCEEEEEc
Confidence 68999999999974442 4689999999887 57899999986 68999999976 99999999999
Q ss_pred cccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 247 PRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 247 P~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.|. |.++. ...++++|||||||||||++|++++..++. .++++|+|++|
T Consensus 248 P~G~--------f~l~~---------~~~~~~vlIagGtGitP~~s~l~~l~~~~~-~~~v~l~~~~r 297 (396)
T 1gvh_A 248 PAGD--------FFMAV---------ADDTPVTLISAGVGQTPMLAMLDTLAKAGH-TAQVNWFHAAE 297 (396)
T ss_dssp EECS--------CCCCC---------CTTCCEEEEEEGGGGHHHHHHHHHHHHHTC-CSCEEEEEEES
T ss_pred CCcc--------eECCC---------CCCCCEEEEecchhHhHHHHHHHHHHhcCC-CCcEEEEEEeC
Confidence 9994 55542 246889999999999999999999987643 57899999987
No 10
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=99.92 E-value=1.5e-24 Score=203.63 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=127.2
Q ss_pred ccccccCCCceEEEEEEEEEEeCCC-----EEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeee
Q psy5567 83 ELKTLVDPDVKVPLKLKEKIEINHD-----TRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSR 157 (314)
Q Consensus 83 ~~~~~l~p~~~~~~~l~~~~~ls~~-----~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (314)
-...+..|...++++|++++.++++ ++.|+|+.+.. .
T Consensus 23 ~~~~~~~p~~~~~~~V~~~~~l~~~~~~~~v~~l~l~~~~~---~----------------------------------- 64 (310)
T 3vo2_A 23 LVTNKYKPKEPYVGRCLSNTRITGDDAPGETWHMVFSTEGE---I----------------------------------- 64 (310)
T ss_dssp CCCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---C-----------------------------------
T ss_pred CceeeecCCCCEEEEEEEEEEccCCCCCccEEEEEEeCCCC---C-----------------------------------
Confidence 3466778889999999999999998 99999996532 2
Q ss_pred eccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cce-eeeeeeeecCCC----CCceEEEEEEEEeecCCCCCCCCChh
Q psy5567 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATIN---DEF-VARAYTPVTSDE----HHGYMDLVVKVYFKNVHPKFPDGGKM 229 (314)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~~-~~R~YTp~s~~~----~~g~l~l~VK~~~~~~~~~~~~~G~~ 229 (314)
.+.||||+.|.++.. +.. ..|+||+++.+. +.+.++|+||++....+....++|.+
T Consensus 65 ----------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~~G~~ 128 (310)
T 3vo2_A 65 ----------------PYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLVYTNDQGEIVKGVC 128 (310)
T ss_dssp ----------------CCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCEEECTTSCEEECHH
T ss_pred ----------------cccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCcch
Confidence 679999999998642 222 479999999986 56899999997521111111236999
Q ss_pred chHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC----Cc
Q psy5567 230 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD----NT 305 (314)
Q Consensus 230 S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~----~~ 305 (314)
|+||+++++||.|.++||+|.+.+ ++. ...++++|||||||||||++|+++++.+..+ ..
T Consensus 129 S~~L~~l~~Gd~v~v~gP~G~~~~-------~~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~ 192 (310)
T 3vo2_A 129 SNFLCDLKPGADVKITGPVGKEML-------MPK---------DPNATVIMLATGTGIAPFRSFLWKMFLEEHEDYKFSG 192 (310)
T ss_dssp HHHHHTCCTTCEEEEEEEECSTTC-------CBS---------CTTCEEEEEEEGGGGHHHHHHHHHHHSSCCTTCCCCS
T ss_pred hhHHhcCCCCCEEEEEeccCCccc-------CCC---------CCCCCEEEEeCCcchhHHHHHHHHHHHhhcccccCCC
Confidence 999999999999999999996332 221 2468999999999999999999999865422 26
Q ss_pred cEEEEEEeC
Q psy5567 306 KMSLIFANQ 314 (314)
Q Consensus 306 ~v~Li~~~r 314 (314)
+++|+|++|
T Consensus 193 ~v~L~~g~r 201 (310)
T 3vo2_A 193 LAWLFLGVP 201 (310)
T ss_dssp EEEEEEEES
T ss_pred cEEEEEEec
Confidence 899999987
No 11
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=99.92 E-value=4.2e-25 Score=200.22 Aligned_cols=146 Identities=21% Similarity=0.431 Sum_probs=122.2
Q ss_pred CCCceEEEEEEEEEEeCCCEEEEEEEc-C-Ccc-ccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCC
Q psy5567 89 DPDVKVPLKLKEKIEINHDTRCFRFEL-P-SAE-HVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESE 165 (314)
Q Consensus 89 ~p~~~~~~~l~~~~~ls~~~~~~~f~~-p-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (314)
....+.+++|++++.++++++.|+|+. + +.. ...
T Consensus 6 ~~~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~~~~------------------------------------------- 42 (250)
T 1tvc_A 6 GEVGSFEAEVVGLNWVSSNTVQFLLQKRPDECGNRGV------------------------------------------- 42 (250)
T ss_dssp CCSSEEEEEBCCCEEEETTEEEEEECSSTTSSSSSCC-------------------------------------------
T ss_pred CCcceEEEEEEEEEEcCCCeEEEEEEecCCCCccccc-------------------------------------------
Confidence 344578999999999999999999997 6 431 011
Q ss_pred CCcccccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEE
Q psy5567 166 PPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINV 244 (314)
Q Consensus 166 ~~~~~~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v 244 (314)
.+.||||+.|.++ +....|+||+++.+.+.+.++|+||++ ++|.+|+||+ ++++||.|.+
T Consensus 43 --------~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~~~~~l~i~vk~~---------~~G~~s~~l~~~l~~Gd~v~v 103 (250)
T 1tvc_A 43 --------KFEPGQFMDLTIP--GTDVSRSYSPANLPNPEGRLEFLIRVL---------PEGRFSDYLRNDARVGQVLSV 103 (250)
T ss_dssp --------SCCSCCEEEECTT--SCSSSEEECCBCCSSSSCCEEEEECCC---------TTSSSHHHHHHHSSSSSEEEE
T ss_pred --------CcCCCcEEEEEeC--CCccccccccCCCCCCCCeEEEEEEEC---------CCCCchHHHHhcCCCCCEEEE
Confidence 6799999999984 445789999999988778999999987 7899999994 9999999999
Q ss_pred EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+||+|. |.+.. ...++++|||||||||||++|++++..++. ..+++|+|++|
T Consensus 104 ~gP~G~--------~~~~~---------~~~~~~vliagGtGiaP~~~~l~~l~~~~~-~~~v~l~~~~r 155 (250)
T 1tvc_A 104 KGPLGV--------FGLKE---------RGMAPRYFVAGGTGLAPVVSMVRQMQEWTA-PNETRIYFGVN 155 (250)
T ss_dssp EEEECC--------CSCCC---------CSSSCEEEEEESSTTHHHHHHHHHHHHHTC-CSCEEEEEECS
T ss_pred EcCccc--------cccCc---------cCCceEEEEEeccCHHHHHHHHHHHHhcCC-CceEEEEEEeC
Confidence 999995 44433 135789999999999999999999987642 57899999986
No 12
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=99.92 E-value=8.4e-25 Score=200.31 Aligned_cols=142 Identities=16% Similarity=0.259 Sum_probs=121.4
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
..+++|++++.++++++.|+|+.++. ..
T Consensus 5 ~~~~~V~~~~~~t~~~~~l~l~~~~~--~~-------------------------------------------------- 32 (262)
T 1ep3_B 5 QEMMTVVSQREVAYNIFEMVLKGTLV--DE-------------------------------------------------- 32 (262)
T ss_dssp EEEEEEEEEEEEETTEEEEEEESGGG--GG--------------------------------------------------
T ss_pred ccceEEEEEEEecCCEEEEEEEcCcc--cc--------------------------------------------------
Confidence 34799999999999999999997642 12
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccCcc
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLA 252 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~ 252 (314)
.+.||||+.|.++.++....|+||+++.+.+.++++|+||.+ ++|.+|+||+++++||.|.++||.|+
T Consensus 33 -~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~---------~~G~~S~~l~~l~~Gd~v~v~gP~G~-- 100 (262)
T 1ep3_B 33 -MDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIG---------DETTGTYKLSKLESGAKVDVMGPLGN-- 100 (262)
T ss_dssp -CCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECC---------CTTSHHHHHHTCCTTCEEEEEEEESB--
T ss_pred -cCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEe---------cCCchHHHHhcCCCCCEEEEEcccCC--
Confidence 679999999998755457889999999987779999999986 67999999999999999999999995
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.+++ ....++++|||||||||||++|++++..++ .+++|+|++|
T Consensus 101 -----~f~l~~--------~~~~~~~lliagGtGitP~~s~l~~l~~~~---~~v~l~~~~r 146 (262)
T 1ep3_B 101 -----GFPVAE--------VTSTDKILIIGGGIGVPPLYELAKQLEKTG---CQMTILLGFA 146 (262)
T ss_dssp -----CCCCTT--------CCTTSEEEEEEEGGGSHHHHHHHHHHHHHT---CEEEEEEEES
T ss_pred -----CccCCC--------ccCCCeEEEEECcCcHHHHHHHHHHHHHcC---CeEEEEEEcC
Confidence 266554 013689999999999999999999998763 5899999987
No 13
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=99.92 E-value=9.8e-25 Score=198.53 Aligned_cols=142 Identities=18% Similarity=0.287 Sum_probs=121.4
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
.|.+++|++++.++++++.|+|+.++. .
T Consensus 2 ~~~~~~V~~~~~~~~~~~~l~l~~~~~---~------------------------------------------------- 29 (257)
T 2qdx_A 2 NLYTERVLSVHHWNDTLFSFKTTRNPG---L------------------------------------------------- 29 (257)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEECCTT---C-------------------------------------------------
T ss_pred ceEEEEEEEEEEcCCCeEEEEEeCCCC---C-------------------------------------------------
Confidence 578999999999999999999987642 1
Q ss_pred cCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-ccccC
Q psy5567 172 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGR 250 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G~ 250 (314)
.+.||||+.|.++.++....|+||+++.+.+ +.++|+||.+ ++|.+|+||+++++||.|.++ ||+|.
T Consensus 30 --~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~~i~~~---------~~G~~s~~l~~l~~Gd~v~v~~gp~G~ 97 (257)
T 2qdx_A 30 --RFKTGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKV---------PDGPLTSRLQHLKEGDELMVSRKPTGT 97 (257)
T ss_dssp --CCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECC---------TTCTTHHHHTTCCTTCEEEECSCCBCS
T ss_pred --ccCCCCEEEEEecCCCCceeeeeEeecCCCC-CeEEEEEEEe---------CCCcchhHHHhCCCCCEEEEecCCCCC
Confidence 6789999999998777778999999998875 8999999987 789999999999999999999 99994
Q ss_pred ccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 251 LAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 251 ~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.++.. ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus 98 --------f~~~~~--------~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r 144 (257)
T 2qdx_A 98 --------LVHDDL--------LPGKHLYLLSTGTGMAPFLSVIQDPETYER-YEKVILVHGVR 144 (257)
T ss_dssp --------CCGGGB--------CSCSEEEEEEEGGGGHHHHHHTTCHHHHHH-CSEEEEEEEES
T ss_pred --------ccCCcc--------cCCCeEEEEEeceEHHHHHHHHHHHHhcCC-CCeEEEEEEcC
Confidence 555430 125899999999999999999998875432 46899999986
No 14
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=99.92 E-value=8.8e-25 Score=200.30 Aligned_cols=143 Identities=18% Similarity=0.279 Sum_probs=122.0
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
..|++++|++++.++++++.|+|+.++. .
T Consensus 17 ~~~~~~~V~~~~~~~~~~~~~~l~~~~~---~------------------------------------------------ 45 (271)
T 4fk8_A 17 SKFDTATVLSVHHWTDTLFSFTCTRDQA---L------------------------------------------------ 45 (271)
T ss_dssp -CEEEEEEEEEEEEETTEEEEEECCCTT---C------------------------------------------------
T ss_pred ccceeEEEEEEEEcCCCEEEEEEEcCCC---C------------------------------------------------
Confidence 4689999999999999999999987642 2
Q ss_pred ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-cccc
Q psy5567 171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRG 249 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G 249 (314)
.++||||+.|.++.++....|+||+++.+.+ +.++|+||++ ++|.+|+||+++++||.|.++ ||+|
T Consensus 46 ---~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~~-~~~~~~v~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G 112 (271)
T 4fk8_A 46 ---RFNNGEFTMVGLEVDGKPLTRAYSIVSPNYE-EHLEFFSIKV---------QNGPLTSRLQHLKVGDPVLIGKKPTG 112 (271)
T ss_dssp ---CCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SSEEEEEECC---------TTCTTHHHHTTCCTTCEEEEESCCBC
T ss_pred ---CcCCCCEEEEEccCCCceeeeeEeccCCCCC-CcEEEEEEEE---------CCCchhhHHhcCCCCCEEEEecCCCc
Confidence 6789999999998878788999999998754 6899999986 789999999999999999999 9999
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
. |.++. ....++++|||||||||||+++++++...+. ..+++|+|++|
T Consensus 113 ~--------~~~~~--------~~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r 160 (271)
T 4fk8_A 113 T--------LVADN--------LLPGKTLWMLSTGTGLAPFMSIIRDPDIYER-FDKVVLTHTCR 160 (271)
T ss_dssp S--------CCGGG--------BCCCSEEEEEECGGGGHHHHHHTTCHHHHHH-CSEEEEEECCC
T ss_pred c--------eecCC--------cCCCCeEEEEECCEEHHHHHHHHHHHHhcCC-CCCEEEEEecC
Confidence 5 44432 0146899999999999999999999876432 46899999986
No 15
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=99.91 E-value=5.2e-24 Score=201.48 Aligned_cols=142 Identities=23% Similarity=0.404 Sum_probs=121.3
Q ss_pred CceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccc
Q psy5567 91 DVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHF 170 (314)
Q Consensus 91 ~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (314)
..+++++|++++.++++++.|+|+.++.....
T Consensus 106 ~~~~~~~V~~~~~~~~~~~~l~l~~~~~~~~~------------------------------------------------ 137 (338)
T 1krh_A 106 IHHFEGTLARVENLSDSTITFDIQLDDGQPDI------------------------------------------------ 137 (338)
T ss_dssp CEEEEEEEEEEEESSSSEEEEEEEECTTCCCC------------------------------------------------
T ss_pred ceEEEEEEEEEEEcCCCEEEEEEEeCCCCCCC------------------------------------------------
Confidence 45789999999999999999999987642111
Q ss_pred ccCCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHh-hcCCCCCeEEEEcccc
Q psy5567 171 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRG 249 (314)
Q Consensus 171 ~~~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L-~~l~~Gd~v~v~GP~G 249 (314)
.+.||||+.|.++ +....|+||+++.+. .+.++|+||++ ++|.+|+|| .++++||.|.++||+|
T Consensus 138 ---~~~pGQ~v~l~~~--~~~~~R~ySi~s~~~-~~~l~~~vk~~---------~~G~~S~~L~~~l~~Gd~v~v~gP~G 202 (338)
T 1krh_A 138 ---HFLAGQYVNVTLP--GTTETRSYSFSSQPG-NRLTGFVVRNV---------PQGKMSEYLSVQAKAGDKMSFTGPFG 202 (338)
T ss_dssp ---CCCTTCEEEEECT--TSSCEEEEECCSCTT-CSEEEEEEECC---------TTCHHHHHHHTTCCTTCEEEEEEEEC
T ss_pred ---CcCCCCeEEEEcC--CCCccccccccCCCC-CCeEEEEEEEc---------CCCCchhhHhhccCCCCEEEEECCcc
Confidence 6799999999985 445789999999987 78999999987 789999999 5899999999999999
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
. |.++. ..++++|||||||||||++|++++..++. ..+++|+|++|
T Consensus 203 ~--------f~~~~----------~~~~~vliagGtGiaP~~s~l~~l~~~~~-~~~v~l~~~~r 248 (338)
T 1krh_A 203 S--------FYLRD----------VKRPVLMLAGGTGIAPFLSMLQVLEQKGS-EHPVRLVFGVT 248 (338)
T ss_dssp S--------CSCCC----------CSSCEEEEEEGGGHHHHHHHHHHHHHHCC-SSCEEEEEEES
T ss_pred c--------eEeCC----------CCceEEEEEccccHhHHHHHHHHHHHcCC-CCeEEEEEEeC
Confidence 5 44443 23789999999999999999999987653 57899999987
No 16
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=99.91 E-value=6e-24 Score=198.90 Aligned_cols=165 Identities=18% Similarity=0.179 Sum_probs=128.3
Q ss_pred ccccccccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceee
Q psy5567 81 KKELKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWC 155 (314)
Q Consensus 81 ~~~~~~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (314)
+.....+.+|....+++|++++.++ ++++.|+|+.+.. .
T Consensus 16 ~~~~~~~~~~~~~~~~~V~~~~~~t~~~~~~~v~~~~l~~~~~---~--------------------------------- 59 (311)
T 3lo8_A 16 KEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGN---V--------------------------------- 59 (311)
T ss_dssp SSCCCCSBBTTBCEEEEEEEEEECSCTTSSSCEEEEEEECTTS---S---------------------------------
T ss_pred ccCCccccCCCCCeEEEEEeeEeccCCCCCCccEEEEEeCCCC---C---------------------------------
Confidence 3445667788899999999999999 9999999998742 2
Q ss_pred eeeccCCCCCCCcccccCCCCCCcEEEEEeeeC-----Cc-eeeeeeeeecCCCC----CceEEEEEEEEeecCC----C
Q psy5567 156 SRVVSAPESEPPFHFAWLGLPIGQHLSLSATIN-----DE-FVARAYTPVTSDEH----HGYMDLVVKVYFKNVH----P 221 (314)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~-----~~-~~~R~YTp~s~~~~----~g~l~l~VK~~~~~~~----~ 221 (314)
.+.||||+.|.++.. |. ...|+||+++.+.+ .+.++|+||++..... .
T Consensus 60 ------------------~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~~~~~~~~~~ 121 (311)
T 3lo8_A 60 ------------------PYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETGKE 121 (311)
T ss_dssp ------------------CCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCCCCCTTTCCC
T ss_pred ------------------cccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEEEecccccCcC
Confidence 689999999998753 21 36899999998864 4899999996410000 0
Q ss_pred CCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC
Q psy5567 222 KFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP 301 (314)
Q Consensus 222 ~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~ 301 (314)
...++|.+|+||+++++||.|.++||+|.+.+.++ ....++++|||||||||||++|+++++.++
T Consensus 122 ~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~~~---------------~~~~~~~vlIagGtGIaP~~s~l~~~~~~~ 186 (311)
T 3lo8_A 122 DPSKNGVCSNFLCNSKPGDKIQLTGPSGKIMLLPE---------------EDPNATHIMIATGTGVAPFRGYLRRMFMED 186 (311)
T ss_dssp CGGGSCHHHHHHHTCCTTCEEEEEEEECCTTCCCC---------------SCTTCEEEEEEEGGGGHHHHHHHHHHHTEE
T ss_pred CcCCCCchhhHHhcCCCcCEEEEEeccCCcccCCC---------------cCCCCCEEEEECCEEHHHHHHHHHHHHHhc
Confidence 01146999999999999999999999996433210 124689999999999999999999998754
Q ss_pred CC----CccEEEEEEeC
Q psy5567 302 TD----NTKMSLIFANQ 314 (314)
Q Consensus 302 ~~----~~~v~Li~~~r 314 (314)
.+ ..+++|+|++|
T Consensus 187 ~~~~~~~~~v~l~~g~r 203 (311)
T 3lo8_A 187 VPNYRFGGLAWLFLGVA 203 (311)
T ss_dssp CTTCCCCSEEEEEEEES
T ss_pred cccccCCCCEEEEEecC
Confidence 32 25899999986
No 17
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=99.91 E-value=2.4e-24 Score=192.63 Aligned_cols=138 Identities=16% Similarity=0.256 Sum_probs=112.5
Q ss_pred eEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCccccc
Q psy5567 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAW 172 (314)
Q Consensus 93 ~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (314)
.++++|++++.++++++.|+|+.+.. .
T Consensus 2 ~~~~~V~~~~~~~~~~~~l~l~~~~~---~-------------------------------------------------- 28 (232)
T 1qfj_A 2 TLSCKVTSVEAITDTVYRVRIVPDAA---F-------------------------------------------------- 28 (232)
T ss_dssp EEEEEEEEEEESSSSCEEEEEEESSC---C--------------------------------------------------
T ss_pred ceEEEEEEEEecCCCEEEEEEecCCC---C--------------------------------------------------
Confidence 36799999999999999999997632 1
Q ss_pred CCCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchH-hhcCCCCCeEEEEccccCc
Q psy5567 173 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQF-LENMKVGEPINVSGPRGRL 251 (314)
Q Consensus 173 ~~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~-L~~l~~Gd~v~v~GP~G~~ 251 (314)
.+.||||+.|.++. ...|+||+++.+.+.+.++|.||++ ++|.+|++ ++++++||.|.++||+|.
T Consensus 29 -~~~pGq~v~l~~~~---~~~R~ySi~s~~~~~~~l~l~i~~~---------~~G~~s~~~~~~l~~Gd~v~v~gP~G~- 94 (232)
T 1qfj_A 29 -SFRAGQYLMVVMDE---RDKRPFSMASTPDEKGFIELHIGAS---------EINLYAKAVMDRILKDHQIVVDIPHGE- 94 (232)
T ss_dssp -CCCTTCEEEEESSS---SCEEEEECCSCTTSTTCEEEEEC---------------CCHHHHHHHHHHSEEEEEEEECS-
T ss_pred -CcCCCCEEEEECCC---CceeeeecCCCCCCCCcEEEEEEEc---------cCCchhHHHHHhCCCCCEEEEeCCccc-
Confidence 67999999999852 4689999999998878999999987 66777776 589999999999999995
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|.+.+ ...++++|||||||||||++|++++..++. ..+++|+|++|
T Consensus 95 -------~~~~~---------~~~~~~vliagG~GitP~~~~l~~l~~~~~-~~~v~l~~~~r 140 (232)
T 1qfj_A 95 -------AWLRD---------DEERPMILIAGGTGFSYARSILLTALARNP-NRDITIYWGGR 140 (232)
T ss_dssp -------CCCCS---------CSSSCEEEEEETTCHHHHHHHHHHHHHHCT-TCCEEEEEEES
T ss_pred -------eEeCC---------CCCCcEEEEEecccHhHHHHHHHHHHhcCC-CCcEEEEEeeC
Confidence 44433 136889999999999999999999987642 57899999987
No 18
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=99.91 E-value=4.3e-24 Score=196.57 Aligned_cols=142 Identities=22% Similarity=0.304 Sum_probs=119.8
Q ss_pred ceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcccc
Q psy5567 92 VKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFA 171 (314)
Q Consensus 92 ~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (314)
.+.+++|++++.++++++.|+|+.++. .
T Consensus 15 ~~~~~~V~~~~~~~~~~~~l~l~~~~~---~------------------------------------------------- 42 (272)
T 2bgi_A 15 LPDAQTVTSVRHWTDTLFSFRVTRPQT---L------------------------------------------------- 42 (272)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEECCTT---C-------------------------------------------------
T ss_pred EeEEEEEEEEEEcCCCEEEEEEeCCCC---C-------------------------------------------------
Confidence 346799999999999999999997642 1
Q ss_pred cCCCCCCcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEE-cccc
Q psy5567 172 WLGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRG 249 (314)
Q Consensus 172 ~~~~~~GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~-GP~G 249 (314)
.+.||||+.|.++. ++....|+||+++.+.+ +.++|+||.+ ++|.+|+||+++++||.|.++ ||+|
T Consensus 43 --~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~---------~~G~~s~~l~~l~~Gd~v~v~~gP~G 110 (272)
T 2bgi_A 43 --RFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKV---------PDGPLTSRLQHIKVGEQIILRPKPVG 110 (272)
T ss_dssp --CCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECC---------TTCTTHHHHTTCCTTCEEEEEEEEEC
T ss_pred --ccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEc---------cCCCchhHHHhCCCCCEEEEeeCCCC
Confidence 67899999999974 45678899999998875 8999999987 789999999999999999999 9999
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
. |.++.. ...++++|||||||||||++|++++...+. ..+++|+|++|
T Consensus 111 ~--------f~~~~~--------~~~~~~vliagG~GiaP~~~~l~~l~~~~~-~~~v~l~~~~r 158 (272)
T 2bgi_A 111 T--------LVIDAL--------LPGKRLWFLATGTGIAPFASLMREPEAYEK-FDEVIMMHACR 158 (272)
T ss_dssp S--------CCGGGB--------CCCSEEEEEEEGGGGHHHHHHTTCGGGGTS-CSEEEEEEEES
T ss_pred c--------cccccc--------ccCCeEEEEeecccHHHHHHHHHHHHhcCC-CCcEEEEEEeC
Confidence 4 555430 125899999999999999999999876532 57899999987
No 19
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=99.91 E-value=1.3e-23 Score=203.45 Aligned_cols=160 Identities=21% Similarity=0.318 Sum_probs=124.5
Q ss_pred CCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCCcc
Q psy5567 90 PDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFH 169 (314)
Q Consensus 90 p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (314)
-..|++++|++++.++++++.|+|+.++..... +. .|
T Consensus 146 w~~~~~~~V~~~~~~s~~i~~~~l~~~~~~~~~----------------------l~--------------------~~- 182 (399)
T 4g1v_A 146 WPGWKPFEITAKEYVASDIVEFTVKPKFGSGIE----------------------LE--------------------SL- 182 (399)
T ss_dssp SCSCEEEEEEEEEEEETTEEEEEEEECTTSCCC----------------------GG--------------------GC-
T ss_pred CCcceEEEEEEEEEcCCCeEEEEEEcCCCCcCC----------------------cC--------------------CC-
Confidence 467999999999999999999999988653210 00 01
Q ss_pred cccCCCCCCcEEEEEeeeC--Cc--eeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhh-cCCCCCeEEE
Q psy5567 170 FAWLGLPIGQHLSLSATIN--DE--FVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLE-NMKVGEPINV 244 (314)
Q Consensus 170 ~~~~~~~~GQ~v~l~~~~~--~~--~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~-~l~~Gd~v~v 244 (314)
.+.||||+.|.++.+ +. ...|+||+++.+.+ +.++|+||++... .+. ++|.+|+||+ ++++||.|.+
T Consensus 183 ----~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~~-~~~~i~Vk~~~~~--~~~-~~G~~S~~L~~~l~~Gd~v~v 254 (399)
T 4g1v_A 183 ----PITPGQYITVNTHPIRQENQYDALRHYSLCSASTK-NGLRFAVKMEAAR--ENF-PAGLVSEYLHKDAKVGDEIKL 254 (399)
T ss_dssp ----CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCCT-TCEEEEEECCCCB--TTB-CCCHHHHHHHHTCCTTCEEEE
T ss_pred ----CCCCCCEEEEEEeCCCCCCccceeeeecccCCCCC-CeEEEEEEeccCC--CCC-CCCEehhHHHhCCCCCCEEEE
Confidence 678999999998655 43 57899999998865 7899999974110 001 4799999995 9999999999
Q ss_pred EccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 245 SGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 245 ~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
+||+|. |.++..+ .....++++|||||||||||++|++++..++. .++++|+|++|
T Consensus 255 ~gP~G~--------f~l~~~~-----~~~~~~~~vlIagG~GitP~~s~l~~l~~~~~-~~~v~l~~~~r 310 (399)
T 4g1v_A 255 SAPAGD--------FAINKEL-----IHQNEVPLVLLSSGVGVTPLLAMLEEQVKCNP-NRPIYWIQSSY 310 (399)
T ss_dssp EEEECS--------CCCCTTT-----TTCSSSCEEEEEEGGGHHHHHHHHHHHHHHCT-TSCEEEEEEES
T ss_pred Eecccc--------eeeCccc-----ccCCCCCEEEEecceeHhHHHHHHHHHHHcCC-CCCEEEEEecC
Confidence 999994 5554300 00136899999999999999999999987653 57899999987
No 20
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=99.90 E-value=4.3e-23 Score=193.57 Aligned_cols=161 Identities=18% Similarity=0.196 Sum_probs=124.7
Q ss_pred cccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeee
Q psy5567 84 LKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRV 158 (314)
Q Consensus 84 ~~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (314)
.....++..+..++|++++.+++ +++.|+|+.+.. .
T Consensus 28 ~~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~---~------------------------------------ 68 (314)
T 1fnb_A 28 TVNKFKPKTPYVGRCLLNTKITGDDAPGETWHMVFSHEGE---I------------------------------------ 68 (314)
T ss_dssp CCCSBBTTBCEEEEEEEEEECSCSSSSSCEEEEEEECTTC---C------------------------------------
T ss_pred CccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCC---C------------------------------------
Confidence 34566778889999999999998 899999997643 2
Q ss_pred ccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc-eeeeeeeeecCCC----CCceEEEEEEEEeecCCCCCCCCChhc
Q psy5567 159 VSAPESEPPFHFAWLGLPIGQHLSLSATIN---DE-FVARAYTPVTSDE----HHGYMDLVVKVYFKNVHPKFPDGGKMS 230 (314)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~-~~~R~YTp~s~~~----~~g~l~l~VK~~~~~~~~~~~~~G~~S 230 (314)
.+.||||+.|.++.. +. ...|+||+++.+. +.+.++|+||+..........++|.+|
T Consensus 69 ---------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~~y~~~~g~~~~G~~S 133 (314)
T 1fnb_A 69 ---------------PYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTNDAGETIKGVCS 133 (314)
T ss_dssp ---------------CCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECCEEECTTSCEEECHHH
T ss_pred ---------------CcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEEEeccCCCCcCCCchh
Confidence 679999999998642 22 3679999999875 358999999963111000111359999
Q ss_pred hHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC----CCcc
Q psy5567 231 QFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT----DNTK 306 (314)
Q Consensus 231 ~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~----~~~~ 306 (314)
+||+++++||.|.++||.|.+. .++. ...++++|||||||||||++|+++++.++. ...+
T Consensus 134 ~~L~~l~~Gd~v~v~gP~G~~~-------~~~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~ 197 (314)
T 1fnb_A 134 NFLCDLKPGAEVKLTGPVGKEM-------LMPK---------DPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGL 197 (314)
T ss_dssp HHHHHCCTTCEEEEEEEECSTT-------CCBS---------CTTCEEEEEEEGGGGHHHHHHHHHHHTCCBTTBCCCSE
T ss_pred hHhhcCCCCCEEEEEeccCCce-------eCCC---------CCCCCEEEEeCCccHHHHHHHHHHHHHhccccccCCCC
Confidence 9999999999999999999632 2222 136789999999999999999999987642 1368
Q ss_pred EEEEEEeC
Q psy5567 307 MSLIFANQ 314 (314)
Q Consensus 307 v~Li~~~r 314 (314)
++|+|++|
T Consensus 198 v~L~~g~R 205 (314)
T 1fnb_A 198 AWLFLGVP 205 (314)
T ss_dssp EEEEEEES
T ss_pred EEEEEecC
Confidence 99999987
No 21
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=99.90 E-value=4e-23 Score=189.01 Aligned_cols=143 Identities=13% Similarity=0.110 Sum_probs=114.8
Q ss_pred cCCCceEEEEEEEEEEeCCCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeeccCCCCCCC
Q psy5567 88 VDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPP 167 (314)
Q Consensus 88 l~p~~~~~~~l~~~~~ls~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (314)
+.+..+.+++|++++++++++++|+|+.++.....
T Consensus 3 ~~~~~~~~~~V~~~~~~t~~~~~l~l~~~~~~~~~--------------------------------------------- 37 (252)
T 2gpj_A 3 MNKPAPRELEVIRSTYITPHMLRITLGGAGLAGFP--------------------------------------------- 37 (252)
T ss_dssp ---CCCEEEEEEEEEEEETTEEEEEEESGGGTTCC---------------------------------------------
T ss_pred CCCCCcEEEEEEEEEEcCCCEEEEEEEcCChhhcC---------------------------------------------
Confidence 34566899999999999999999999977542211
Q ss_pred cccccCCCCCCcEEEEEeee-CCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCC-ChhchHhhcCCCCCeEEEE
Q psy5567 168 FHFAWLGLPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDG-GKMSQFLENMKVGEPINVS 245 (314)
Q Consensus 168 ~~~~~~~~~~GQ~v~l~~~~-~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~-G~~S~~L~~l~~Gd~v~v~ 245 (314)
.+.|||||.|.++. ++....|+||+++.+. +.++|.|++. ++ |.+|+||+++++||.|.+.
T Consensus 38 ------~~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~---------~~~G~~S~~l~~l~~Gd~l~v~ 100 (252)
T 2gpj_A 38 ------ADQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLH---------DTDGPASSWAKTAQVGELIQIG 100 (252)
T ss_dssp ------SCCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECC---------SSCCHHHHHHHHCCTTCEEEEE
T ss_pred ------CCCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEe---------CCCCcHHHHHhhCCCCCEEEEe
Confidence 57999999999975 3456889999998765 6888888865 44 9999999999999999999
Q ss_pred ccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 246 GPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 246 GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
||.|. |.+++ ..++++|||||||||||++|++++... .+++++++++
T Consensus 101 gP~G~--------f~l~~----------~~~~~lliagGtGitPi~s~l~~l~~~----~~~~~~~~~~ 147 (252)
T 2gpj_A 101 GPGLK--------KLINF----------EADWFLLAGDMTALPAISVNLAKLPNN----AVGYAVIEVL 147 (252)
T ss_dssp EEECC--------CCCCS----------SSSEEEEEEEGGGHHHHHHHHHHSCTT----CEEEEEEEES
T ss_pred cCCCC--------CcCCC----------CCceEEEEcchhhHHHHHHHHHhCCCC----CcEEEEEEEC
Confidence 99994 55543 247899999999999999999998432 4677777654
No 22
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=99.89 E-value=1.1e-22 Score=198.58 Aligned_cols=163 Identities=21% Similarity=0.321 Sum_probs=127.0
Q ss_pred cccccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeee
Q psy5567 82 KELKTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCS 156 (314)
Q Consensus 82 ~~~~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (314)
++...++.+..+..++|++++.+++ +++.|+|+++... .
T Consensus 111 ~~p~~~~~~~~~~~~~V~~~~~lt~~~~~~~v~~l~l~~~~~~--~---------------------------------- 154 (402)
T 2b5o_A 111 SVPVNIYRPKTPFLGKCIENYELVDEGGSGTVRHVTFDISEGD--L---------------------------------- 154 (402)
T ss_dssp CCCCCSSCSSSCEEEEEEEEEECSCTTCCSCEEEEEEECTTSC--C----------------------------------
T ss_pred CCCcccccCCCCEEEEEEEEEEcCCCCCCCcEEEEEEECCCCC--C----------------------------------
Confidence 4455667778889999999999999 9999999987431 2
Q ss_pred eeccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc-eeeeeeeeecCCCC----CceEEEEEEE--EeecCCCCCCCC
Q psy5567 157 RVVSAPESEPPFHFAWLGLPIGQHLSLSATIN---DE-FVARAYTPVTSDEH----HGYMDLVVKV--YFKNVHPKFPDG 226 (314)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~-~~~R~YTp~s~~~~----~g~l~l~VK~--~~~~~~~~~~~~ 226 (314)
.+.||||+.|.++.. +. ...|+||+++.+.+ .+.++|+||+ |... .....++
T Consensus 155 -----------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~~~y~~~-~~~~~~~ 216 (402)
T 2b5o_A 155 -----------------RYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQLEYQDP-ESGETVY 216 (402)
T ss_dssp -----------------CCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEECCEEECT-TTCCEEE
T ss_pred -----------------CcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEEEeeeccc-ccCcCCC
Confidence 689999999987531 22 36799999998863 6899999997 2100 0001136
Q ss_pred ChhchHhhcCCCC-CeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCC--
Q psy5567 227 GKMSQFLENMKVG-EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTD-- 303 (314)
Q Consensus 227 G~~S~~L~~l~~G-d~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~-- 303 (314)
|.+|+||+++++| |.|.+.||+|.+. .++. ...++++|||||||||||++|+++++.++.+
T Consensus 217 G~~S~~L~~l~~G~d~v~v~gP~G~~~-------~l~~---------~~~~~vvlIAgGtGIaP~~s~l~~l~~~~~~~~ 280 (402)
T 2b5o_A 217 GVCSTYLCNLPVGTDDVKITGPVGKEM-------LLPD---------DEDATVVMLATGTGIAPFRAFLWRMFKEQHEDY 280 (402)
T ss_dssp CHHHHHHHTCCTTCCCEEEEEEECSTT-------CCCS---------CTTCEEEEEEEGGGGHHHHHHHHHHHTCCCSSC
T ss_pred CchhHHHhhCCCCCceEEEEcccCCcc-------cCCc---------cCCCCEEEEEcccCHHHHHHHHHHHHHhccccc
Confidence 9999999999999 9999999999632 2322 2368999999999999999999999876531
Q ss_pred --CccEEEEEEeC
Q psy5567 304 --NTKMSLIFANQ 314 (314)
Q Consensus 304 --~~~v~Li~~~r 314 (314)
..+++|+|++|
T Consensus 281 ~~~~~v~L~~g~R 293 (402)
T 2b5o_A 281 KFKGKAWLIFGVP 293 (402)
T ss_dssp CCCSEEEEEEEES
T ss_pred cccCCEEEEEecC
Confidence 36899999987
No 23
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=99.89 E-value=1.1e-22 Score=192.17 Aligned_cols=157 Identities=19% Similarity=0.330 Sum_probs=122.3
Q ss_pred cccCCCceEEEEEEEEEEeC-----CCEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeecc
Q psy5567 86 TLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVS 160 (314)
Q Consensus 86 ~~l~p~~~~~~~l~~~~~ls-----~~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (314)
.+..|.....++|++++.++ ++++.++|..+.. .
T Consensus 8 ~~~~~~~p~~~~v~~~~~l~~~~~~~~v~~~~~~~~~~---~-------------------------------------- 46 (316)
T 3jqq_A 8 NLYTVKNPLKCKIVDKINLVRPNSPNEVYHLEINHNGL---F-------------------------------------- 46 (316)
T ss_dssp TSSCSSSCEEEEEEEEEECSCTTCSCCEEEEEEECTTC---C--------------------------------------
T ss_pred eeecCCCCEEEEEEeeEEccCCCCCCceEEEEEeCCCC---c--------------------------------------
Confidence 44556677899999999998 8999999987532 2
Q ss_pred CCCCCCCcccccCCCCCCcEEEEEeeeC----------------------------------CceeeeeeeeecCCCCCc
Q psy5567 161 APESEPPFHFAWLGLPIGQHLSLSATIN----------------------------------DEFVARAYTPVTSDEHHG 206 (314)
Q Consensus 161 ~~~~~~~~~~~~~~~~~GQ~v~l~~~~~----------------------------------~~~~~R~YTp~s~~~~~g 206 (314)
.|.+|||+.|..+.. +....|+||++|++.+ +
T Consensus 47 -------------~~~~GQ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~g~~~~R~ySIaS~p~~-~ 112 (316)
T 3jqq_A 47 -------------KYLEGHTCGIIPYYNELDNNPNNQINKDHNIINTTNHTNHNNIALSHIKKQRCARLYSISSSNNM-E 112 (316)
T ss_dssp -------------CCCTTCEEEECTTCC-----------------------------------CCCCEEEEBCSCTTS-S
T ss_pred -------------ceecCcEeEEECCCcccccccccccccccccccccccccccccccccCCCcccceeeecccCCCC-C
Confidence 678999998877532 3457899999999876 7
Q ss_pred eEEEEEEEEe--ec-CCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCC---CCCeEEE
Q psy5567 207 YMDLVVKVYF--KN-VHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNL---KVTQLSM 280 (314)
Q Consensus 207 ~l~l~VK~~~--~~-~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~---~~~~vvm 280 (314)
.++|+||+.. .. ......++|.+|+||++|++||.|.++||+|. |.++. . ..++++|
T Consensus 113 ~l~l~Vk~~~y~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~--------f~l~~---------~~~~~~~~vvl 175 (316)
T 3jqq_A 113 NLSVAIKIHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGAHGY--------FNLPN---------DAIQKNTNFIF 175 (316)
T ss_dssp SEEEEEECCBC---------CCBCHHHHHHHTCCTTCEEEEEEEECC--------CCCCT---------THHHHTCCEEE
T ss_pred eEEEEEEEEEecccccccCcCCCCchhHHHhhCCCCCEEEEEecCCc--------eEcCC---------cccCCCCcEEE
Confidence 8999999630 00 00112256999999999999999999999994 55544 1 2678999
Q ss_pred EEcCcCHHHHHHHHHHHhhCCC---------CCccEEEEEEeC
Q psy5567 281 IAGGTGITPMLQLVRHITKDPT---------DNTKMSLIFANQ 314 (314)
Q Consensus 281 IAgGtGItP~l~li~~l~~~~~---------~~~~v~Li~~~r 314 (314)
||||||||||++|++++...+. +..+++|+|++|
T Consensus 176 IAgGtGIaP~~sil~~l~~~~~~~~~~~~~~~~~~v~L~~g~R 218 (316)
T 3jqq_A 176 IATGTGISPYISFLKKLFAYDKNNLYNRNSNYTGYITIYYGVY 218 (316)
T ss_dssp EEEGGGGHHHHHHHHHHTTCCGGGTTCCCCCCCCCEEEEEEES
T ss_pred EeCCceechHHHHHHHHHHhccccccccccCCCCcEEEEEEec
Confidence 9999999999999999987642 247899999987
No 24
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=99.89 E-value=2e-22 Score=187.70 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=123.0
Q ss_pred ccccCCCceEEEEEEEEEEeCC-----CEEEEEEEcCCccccccceecccccccccccCCCcccccCcccccceeeeeec
Q psy5567 85 KTLVDPDVKVPLKLKEKIEINH-----DTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVV 159 (314)
Q Consensus 85 ~~~l~p~~~~~~~l~~~~~ls~-----~~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (314)
....++.....++|++++.+++ +++.|+|+++... .
T Consensus 13 ~~~~~~~~~~~~~V~~~~~l~~~~~~~~v~~l~~~~~~~~--~------------------------------------- 53 (304)
T 2bmw_A 13 VNLYRPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGN--L------------------------------------- 53 (304)
T ss_dssp CCSBBTTBCEEEEEEEEEECSCTTCSSCEEEEEEECTTSC--C-------------------------------------
T ss_pred ccccCCCCCEEEEEEEEEEecCCCCCCcEEEEEEecCCCc--c-------------------------------------
Confidence 3566677788999999999999 8999999987531 2
Q ss_pred cCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc-eeeeeeeeecCCC----CCceEEEEEEEE-eecCCCCCCCCChhc
Q psy5567 160 SAPESEPPFHFAWLGLPIGQHLSLSATIN---DE-FVARAYTPVTSDE----HHGYMDLVVKVY-FKNVHPKFPDGGKMS 230 (314)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~-~~~R~YTp~s~~~----~~g~l~l~VK~~-~~~~~~~~~~~G~~S 230 (314)
.+.||||+.|.++.. +. ...|+||+++.+. +.+.++|+||.. ++.........|.+|
T Consensus 54 --------------~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~~~y~~~~~~~~~~G~~S 119 (304)
T 2bmw_A 54 --------------KYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCS 119 (304)
T ss_dssp --------------CCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEECCEECSSSSSSCEECHHH
T ss_pred --------------ccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEEEEeeccccCcCCCcchh
Confidence 689999999998642 22 3579999999875 368999999972 110000001259999
Q ss_pred hHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCC--------
Q psy5567 231 QFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT-------- 302 (314)
Q Consensus 231 ~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~-------- 302 (314)
+||+++++||.|.++||+|.+ |.++. ...++++|||||||||||++++++++.+..
T Consensus 120 ~~L~~l~~Gd~v~v~gP~G~~-------~~~~~---------~~~~~~vlIagGtGIaP~~s~l~~~~~~~~~~~~~~~~ 183 (304)
T 2bmw_A 120 TYLTHIEPGSEVKITGPVGKE-------MLLPD---------DPEANVIMLAGGTGITPMRTYLWRMFKDAERAANPEYQ 183 (304)
T ss_dssp HHHHTCCTTCEEEEEEEECSS-------SCCCS---------CTTCEEEEEEEGGGHHHHHHHHHHHHCHHHHHHCTTCC
T ss_pred hHHhcCCCCCEEEEEeccCCc-------eeCCC---------CCCCCEEEEecCccHHHHHHHHHHHHHhhhhhcccccc
Confidence 999999999999999999963 22222 235789999999999999999999875420
Q ss_pred CCccEEEEEEeC
Q psy5567 303 DNTKMSLIFANQ 314 (314)
Q Consensus 303 ~~~~v~Li~~~r 314 (314)
...+++|+|++|
T Consensus 184 ~~~~v~l~~g~r 195 (304)
T 2bmw_A 184 FKGFSWLVFGVP 195 (304)
T ss_dssp CCSCEEEEEEES
T ss_pred cCCCEEEEEEeC
Confidence 136899999987
No 25
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=99.89 E-value=1.5e-22 Score=189.68 Aligned_cols=162 Identities=14% Similarity=0.273 Sum_probs=122.7
Q ss_pred ccccCCCceEEEEEEEEEEeCCC--------------EEEEEEEcCCccccccceecccccccccccCCCcccccCcccc
Q psy5567 85 KTLVDPDVKVPLKLKEKIEINHD--------------TRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQR 150 (314)
Q Consensus 85 ~~~l~p~~~~~~~l~~~~~ls~~--------------~~~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (314)
.....+...+.++|++++.++++ ++.|+|+.+.. ..
T Consensus 13 ~~~~~~~~~~~~~V~~~~~lt~~~~~~~~~~~e~~~~~~~l~l~~~~~--~~---------------------------- 62 (314)
T 2rc5_A 13 INLFKKSNPYKAKVISNVLLTPETGTGKRPKKEGEALVHRIVLAIDHS--AY---------------------------- 62 (314)
T ss_dssp CCSBBTTBCEEEEEEEEEECSCCTTSSSCCSSSCCCCEEEEEEECCTT--TC----------------------------
T ss_pred cCCCCCCCCEEEEEEEeEEcCCccccccccccccCceEEEEEEeCCCC--cC----------------------------
Confidence 34455667889999999999998 99999987643 12
Q ss_pred cceeeeeeccCCCCCCCcccccCCCCCCcEEEEEeeeC---Cc--------eeeeeeeeecCCC----CCceEEEEEEEE
Q psy5567 151 VSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATIN---DE--------FVARAYTPVTSDE----HHGYMDLVVKVY 215 (314)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~v~l~~~~~---~~--------~~~R~YTp~s~~~----~~g~l~l~VK~~ 215 (314)
.+.||||+.|.++.. +. ...|+||+++.+. +.+.++|+||++
T Consensus 63 -----------------------~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~ 119 (314)
T 2rc5_A 63 -----------------------PYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRD 119 (314)
T ss_dssp -----------------------CCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECC
T ss_pred -----------------------cccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEE
Confidence 679999999998642 22 2679999999885 468999999975
Q ss_pred ee-cCCCCCCCCChhchHhhcCCCCCeEEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHH
Q psy5567 216 FK-NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLV 294 (314)
Q Consensus 216 ~~-~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li 294 (314)
.. ..+.+..++|.+|+||+++++||.|.++||.|.+.+. +. ....++++|||||||||||++|+
T Consensus 120 ~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~gP~G~~~~~-------~~--------~~~~~~~vlIagGtGIaP~~s~l 184 (314)
T 2rc5_A 120 NIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGPSGKKFLL-------PN--------TDFSGDIMFLATGTGIAPFIGMS 184 (314)
T ss_dssp BCC--CCSCSSBCHHHHHHHTCCTTCEEEEEEEECSSSCC-------CS--------SCBCSCEEEEEEGGGGHHHHHHH
T ss_pred eecCCCCCcCCCcchHHHHhcCCCcCEEEEEeccCCceeC-------CC--------CCCCCCEEEEECCccHHHHHHHH
Confidence 10 0000111368999999999999999999999963222 11 01367899999999999999999
Q ss_pred HHHhhCCC--CCccEEEEEEeC
Q psy5567 295 RHITKDPT--DNTKMSLIFANQ 314 (314)
Q Consensus 295 ~~l~~~~~--~~~~v~Li~~~r 314 (314)
+++..++. ...+++|+|++|
T Consensus 185 ~~l~~~~~~~~~~~v~l~~g~r 206 (314)
T 2rc5_A 185 EELLEHKLIKFTGNITLVYGAP 206 (314)
T ss_dssp HHHHTTCSSCBCSCEEEEEEES
T ss_pred HHHHHhcccCCCCcEEEEEEeC
Confidence 99987642 236899999987
No 26
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=99.72 E-value=1.7e-18 Score=167.87 Aligned_cols=119 Identities=24% Similarity=0.305 Sum_probs=95.3
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhc-CCCCCeEEEEccccCc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLEN-MKVGEPINVSGPRGRL 251 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~-l~~Gd~v~v~GP~G~~ 251 (314)
.+++|||+.+..+ ...|+||++|++.. .+.++|+||++....+ ..+.+|.+|+||++ +++||.|.+.||.+.
T Consensus 145 ~~~~Gq~v~l~~~----~~~R~YSIaSsp~~~~~~i~l~V~~v~~~~~-~~~~~G~~S~~L~~~l~~Gd~v~v~~~~~g- 218 (374)
T 1ddg_A 145 QLDAEALINLLRP----LTPRLYSIASSQAEVENEVHVTVGVVRYDVE-GRARAGGASSFLADRVEEEGEVRVFIEHND- 218 (374)
T ss_dssp CCCHHHHHHHSCB----CCCEEEEBCCCTTTSCSEEEEEEEECEEEET-TEEEECHHHHHHHHSCCSSCEEEEEEECCT-
T ss_pred CCCHHHHHhhccC----CCCccceecCCCCCCCCEEEEEEEEEEeecC-CCCCCCCchHHHHhcCCCCCEEEEEEeeCC-
Confidence 6799999988764 36899999999875 7899999998622211 22246999999977 999999999995541
Q ss_pred cccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 252 AYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 252 ~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
.|.++. +..++++|||||||||||++|++++...+. ..+++|+||+|
T Consensus 219 ------~F~lp~---------~~~~piimIa~GtGIAP~~s~l~~~~~~~~-~~~~~L~~G~R 265 (374)
T 1ddg_A 219 ------NFRLPA---------NPETPVIMIGPGTGIAPFRAFMQQRAADEA-PGKNWLFFGNP 265 (374)
T ss_dssp ------TSCCCS---------STTSCEEEECCGGGGHHHHHHHHHHHHHTC-CSCEEEEEEES
T ss_pred ------CccCCC---------CCCCCEEEEECCccHHHHHHHHHHHHhcCC-CCCEEEEEEeC
Confidence 577654 236789999999999999999999887653 57899999997
No 27
>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*
Probab=99.64 E-value=8.6e-17 Score=157.05 Aligned_cols=120 Identities=21% Similarity=0.303 Sum_probs=89.5
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecC-CCCCCCCChhchHhhcCCCCCeEE--EEcccc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNV-HPKFPDGGKMSQFLENMKVGEPIN--VSGPRG 249 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~-~~~~~~~G~~S~~L~~l~~Gd~v~--v~GP~G 249 (314)
.++++|++.+- + ....|+||++|++.. .+.++|+|+++.... ..+-...|.+|+||+++++||.|. ++||.|
T Consensus 156 ~~p~~~~l~~l-p---~l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~G~~S~~L~~l~~Gd~v~v~v~~P~g 231 (393)
T 4dql_A 156 EMKFSEFIALL-P---SIRPRYYSISSSPRVDEKQASITVSVVSGEAWSGYGEYKGIASNYLAELQEGDTITCFISTPQS 231 (393)
T ss_dssp CCCHHHHHHTS-C---BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSSSEEECHHHHHHHHCCTTCEEEEEEECCSS
T ss_pred CCCHHHHHHhC-C---CCcceeeeccccccccCceEEEEEEEEecccCCCCcccCCccchhHHhCCCcCEEEEEEEcCCC
Confidence 55677777552 1 236799999999875 589999999762210 000011299999999999999998 789999
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHH---hhCCCCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI---TKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l---~~~~~~~~~v~Li~~~r 314 (314)
.|.++. ...++++|||||||||||++++++. ..++.+..+++|+||+|
T Consensus 232 --------~F~lp~---------~~~~piImIg~GtGIAPf~s~l~~r~~~~~~g~~~~~v~L~~G~R 282 (393)
T 4dql_A 232 --------EFTLPK---------DPETPLIMVGPGTGVAPFRGFVQARKQLKEQGQSLGEAHLYFGCR 282 (393)
T ss_dssp --------CCCCCS---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEES
T ss_pred --------CcccCc---------cCCCCeEEEccCceechHHHHHHHHHHHHhcCCCCCCEEEEEEEC
Confidence 466654 2357899999999999999999984 33444456899999997
No 28
>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4
Probab=99.56 E-value=3.3e-15 Score=147.45 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=81.7
Q ss_pred eeeeeeeeecCCCC-CceEEEEEEEEeecCC--CCCCCCChhchHhhcCCCCCeEEEEc-cccCccccCCcceeecccCC
Q psy5567 191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVH--PKFPDGGKMSQFLENMKVGEPINVSG-PRGRLAYLGNGEFHIRAVSK 266 (314)
Q Consensus 191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~--~~~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~~~y~~~g~f~l~~~~~ 266 (314)
...|+||++|++.+ .+.++|+|+++..... ......|.+|+||+++++||.|.+.| |.| .|.++.
T Consensus 208 l~~R~YSIsSsp~~~~~~i~l~v~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~~~g--------~F~lp~--- 276 (435)
T 1f20_A 208 LQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP--------SFHLPR--- 276 (435)
T ss_dssp CCCEEEECCSCTTTSTTEEEEEEECCEEECGGGTSCEEECHHHHHHTTCCTTCEEEEEEECCT--------TSSCCS---
T ss_pred CCCccccccCCcccCCCeEEEEEEEEEEecCCCCCcccCCccchhHhhCCCCCEEEEEEecCC--------CccCCC---
Confidence 36799999999875 6899999986411100 00112499999999999999999999 555 576654
Q ss_pred CCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC----CCCCccEEEEEEeC
Q psy5567 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD----PTDNTKMSLIFANQ 314 (314)
Q Consensus 267 ~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~----~~~~~~v~Li~~~r 314 (314)
...++++|||||||||||++|++++... +....+++|+||+|
T Consensus 277 ------~~~~piilIagGtGIAP~~s~l~~~~~~~~~~~~~~~~~~L~~G~R 322 (435)
T 1f20_A 277 ------NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCR 322 (435)
T ss_dssp ------CTTSCEEEECCGGGGHHHHHHHHHHHHHHHHHCCCCCCEEEEEEES
T ss_pred ------CCCCCEEEEECCcCcHHHHHHHHHHHHhhhhccCCCCCEEEEEeec
Confidence 2357899999999999999999988763 12357899999997
No 29
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=99.51 E-value=2.9e-14 Score=142.05 Aligned_cols=108 Identities=14% Similarity=0.226 Sum_probs=82.4
Q ss_pred ceeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCC------eEEEEccccCccccCCcceeec
Q psy5567 190 EFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGE------PINVSGPRGRLAYLGNGEFHIR 262 (314)
Q Consensus 190 ~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd------~v~v~GP~G~~~y~~~g~f~l~ 262 (314)
....|+||++|++.. .+.++|+|++.......+...+|.+|+||+++.+|+ .|.+.+|.| .|.++
T Consensus 231 ~l~pR~YSIsSsp~~~~~~i~ltV~vv~~~~~~~r~~~G~~S~~L~~l~~gg~~~~~~~v~v~~p~g--------~F~lp 302 (458)
T 3qfs_A 231 RLQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKS--------QFRLP 302 (458)
T ss_dssp BCCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCSSCSSCCCCEEEEEEECC--------SCCCC
T ss_pred CCcceeEeeccCcccCCCEEEEEEEEEEecCCCCCCCCCchhHHHHhhccCCccCCceEEEEEecCC--------CcccC
Confidence 357799999999875 688999987532221122235699999999888765 599999999 57665
Q ss_pred ccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHh---hCCCCCccEEEEEEeC
Q psy5567 263 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHIT---KDPTDNTKMSLIFANQ 314 (314)
Q Consensus 263 ~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~---~~~~~~~~v~Li~~~r 314 (314)
. ...++++|||||||||||++|+++.. .++.+..+++|+||+|
T Consensus 303 ~---------~~~~piImIggGTGIAPfrs~lq~r~~l~~~g~~~~~~~Lf~G~R 348 (458)
T 3qfs_A 303 F---------KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCR 348 (458)
T ss_dssp S---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHHTCCCCCEEEEEEES
T ss_pred C---------CCCCceEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEEeC
Confidence 4 23578999999999999999999853 3333356899999997
No 30
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=99.50 E-value=1.2e-14 Score=151.00 Aligned_cols=128 Identities=20% Similarity=0.230 Sum_probs=94.3
Q ss_pred CCCCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCCC---CCCCCChhchHhhcCCC------------
Q psy5567 175 LPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVHP---KFPDGGKMSQFLENMKV------------ 238 (314)
Q Consensus 175 ~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~---~~~~~G~~S~~L~~l~~------------ 238 (314)
-.|+|++...++ ....|+||++|++.. .+.++|+|++.....+. +....|.+|+||+++++
T Consensus 414 ~~p~~~l~~~lp---~l~~R~YSIsSsp~~~~~~i~ltv~Vv~~~~~~~~~~~~~~G~~S~~L~~l~~g~~~~~~~~~~~ 490 (682)
T 2bpo_A 414 TVPMQFLVESVP---QMTPRYYSISSSSLSEKQTVHVTSIVENFPNPELPDAPPVVGVTTNLLRNIQLAQNNVNIAETNL 490 (682)
T ss_dssp TSCHHHHHHHSC---BCCCEEEEBCSCTTTCTTEEEEEEECCEECCSSCTTSCCEECHHHHHHHHHHHHHTTCCTTTSCC
T ss_pred CCCHHHHHHhCc---ccccccccccCCcccCCCeEEEEEEEEEEecCcccCCcccCccccHHHHhccccccccccccccc
Confidence 357777766553 246799999999875 58899987653111111 23357999999988877
Q ss_pred CCeEEEEccccCcc------ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCC---------CC
Q psy5567 239 GEPINVSGPRGRLA------YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP---------TD 303 (314)
Q Consensus 239 Gd~v~v~GP~G~~~------y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~---------~~ 303 (314)
|+.+.++||.|.|. |..++.|.++. ....+++|||||||||||++|++++.... ..
T Consensus 491 G~~v~i~GP~G~f~~~~v~v~vr~~~F~Lp~---------~~~~piImIg~GTGIAPfrs~lq~r~~~~~~~~~~~~g~~ 561 (682)
T 2bpo_A 491 PVHYDLNGPRKLFANYKLPVHVRRSNFRLPS---------NPSTPVIMIGPGTGVAPFRGFIRERVAFLESQKKGGNNVS 561 (682)
T ss_dssp CCCCCSSCGGGTTTTTEECEEEECCSCCCCS---------STTSCEEEEEEGGGGHHHHHHHHHHHHHHHTCC----CCC
T ss_pred ccceeeccCcCcccCceEEEEEecCcccCCC---------CCCCCEEEEecCcChHHHHHHHHHHHHhhcccccccccCC
Confidence 99999999999872 33334576654 23579999999999999999999887532 22
Q ss_pred CccEEEEEEeC
Q psy5567 304 NTKMSLIFANQ 314 (314)
Q Consensus 304 ~~~v~Li~~~r 314 (314)
..+++|+||+|
T Consensus 562 ~~~~~L~fG~R 572 (682)
T 2bpo_A 562 LGKHILFYGSR 572 (682)
T ss_dssp CCCEEEEEEES
T ss_pred cCCEEEEEecC
Confidence 46899999997
No 31
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=99.49 E-value=4.8e-14 Score=144.86 Aligned_cols=107 Identities=16% Similarity=0.255 Sum_probs=81.4
Q ss_pred eeeeeeeeecCCCC-CceEEEEEEEEeecCCCCCCCCChhchHhhcCCC-CC-----eEEEEccccCccccCCcceeecc
Q psy5567 191 FVARAYTPVTSDEH-HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV-GE-----PINVSGPRGRLAYLGNGEFHIRA 263 (314)
Q Consensus 191 ~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~-Gd-----~v~v~GP~G~~~y~~~g~f~l~~ 263 (314)
...|+||++|++.. .+.++|+|++.......+....|.+|+||+++.+ || .|.+.+|.| .|.++.
T Consensus 392 l~pR~YSIsSsp~~~~~~i~ltv~vv~~~~~~~~~~~G~~S~~L~~l~~~Gd~~~~~~v~v~~p~g--------~F~lp~ 463 (618)
T 3qe2_A 392 LQARYYSIASSSKVHPNSVHICAVVVEYETKAGRINKGVATNWLRAKEPVGENGGRALVPMFVRKS--------QFRLPF 463 (618)
T ss_dssp CCCEEEECCSCTTTCTTEEEEEEECCEEECTTSCEEECHHHHHHHTCCCC-----CCEEEEEEECC--------SCCCCS
T ss_pred cccceeccccCCcCCCCEEEEEEEEEEEecCCCCCCCCcccHHHHhhcccCCCCcceEEEEEEecC--------cccCCC
Confidence 46799999999865 5788888765322222222356999999999888 88 999999999 576654
Q ss_pred cCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh---CCCCCccEEEEEEeC
Q psy5567 264 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK---DPTDNTKMSLIFANQ 314 (314)
Q Consensus 264 ~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~---~~~~~~~v~Li~~~r 314 (314)
....+++|||||||||||++|+++... ++.+..+++|+||+|
T Consensus 464 ---------~~~~piimIg~GtGIAPfrs~l~~r~~~~~~g~~~~~~~L~~G~R 508 (618)
T 3qe2_A 464 ---------KATTPVIMVGPGTGVAPFIGFIQERAWLRQQGKEVGETLLYYGCR 508 (618)
T ss_dssp ---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHTTCCCCCEEEEEEES
T ss_pred ---------CCCCCeEEEcCCcchhhHHHHHHHHHHHHhcCCCCCCEEEEEecC
Confidence 235789999999999999999998763 333357899999997
No 32
>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4
Probab=99.48 E-value=3.5e-14 Score=147.60 Aligned_cols=118 Identities=17% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCcEEEEEeeeCCceeeeeeeeecCCCC-CceEEEEEEEEeecCC--CCCCCCChhchHhhcCCCCCeEEEEc-cccCcc
Q psy5567 177 IGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKVYFKNVH--PKFPDGGKMSQFLENMKVGEPINVSG-PRGRLA 252 (314)
Q Consensus 177 ~GQ~v~l~~~~~~~~~~R~YTp~s~~~~-~g~l~l~VK~~~~~~~--~~~~~~G~~S~~L~~l~~Gd~v~v~G-P~G~~~ 252 (314)
|+||+...++ ....|+||++|++.. .+.++|+|++...... ...+..|.+|+||+++++||.|.+.| |.|
T Consensus 418 p~~~l~~~lp---~l~~R~YSIsSsp~~~~~~i~l~V~vv~~~~~~g~~~~~~G~~S~~L~~l~~Gd~v~v~~~p~g--- 491 (688)
T 1tll_A 418 PATLLLTQLS---LLQPRYYSISSSPDMYPDEVHLTVAIVSYHTRDGEGPVHHGVCSSWLNRIQADDVVPCFVRGAP--- 491 (688)
T ss_dssp CHHHHHHHSC---BCCCEEEEBCSCTTTSTTEEEEEEECCEEETGGGTSCEEECHHHHHHTTCCTTSEEEEEEECCG---
T ss_pred CHHHHHHhCc---ccceeEEeecCCcccCCCeEEEEEEEEEEecCCCCCCcCCCchhHHHHhCCCCCEEEEEeccCC---
Confidence 4454443332 236799999999875 6889999986411100 00112499999999999999999999 555
Q ss_pred ccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhC----CCCCccEEEEEEeC
Q psy5567 253 YLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD----PTDNTKMSLIFANQ 314 (314)
Q Consensus 253 y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~----~~~~~~v~Li~~~r 314 (314)
.|.++. ...++++|||||||||||++|++++... +....+++|+||+|
T Consensus 492 -----~F~lp~---------~~~~piIlIagGtGIAP~~s~l~~~~~~~~~~~~~~~~v~L~~G~R 543 (688)
T 1tll_A 492 -----SFHLPR---------NPQVPCILVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCR 543 (688)
T ss_dssp -----GGSCCS---------CTTSCEEEEEEGGGGTTHHHHHHHHHHHHHHSCCCCCCEEEEEEES
T ss_pred -----CcccCc---------CCCCCEEEEEcCcchHHHHHHHHHHHHhhhhccCCCCCEEEEEEec
Confidence 577654 2357899999999999999999988763 22357899999997
No 33
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*
Probab=99.48 E-value=3.1e-14 Score=144.28 Aligned_cols=108 Identities=20% Similarity=0.317 Sum_probs=79.1
Q ss_pred eeeeeeeeecCCC-CCceEEEEEEEEeecC--CCCCCCCChhchHhhcC-----------CCCC-------eEEEEcccc
Q psy5567 191 FVARAYTPVTSDE-HHGYMDLVVKVYFKNV--HPKFPDGGKMSQFLENM-----------KVGE-------PINVSGPRG 249 (314)
Q Consensus 191 ~~~R~YTp~s~~~-~~g~l~l~VK~~~~~~--~~~~~~~G~~S~~L~~l-----------~~Gd-------~v~v~GP~G 249 (314)
...|+||++|++. +.+.++|+||++.... ..+.+.+|.+|+||+++ ++|| .|.+.||.|
T Consensus 289 l~~R~YSIsSsp~~~~~~i~ltV~~v~~~~~~~~~~~~~G~~S~~L~~l~~~~~~~~~~~~~Gd~~~~~~~~V~v~~p~g 368 (539)
T 2qtl_A 289 LQPRPYSCASSSLFHPGKLHFVFNIVEFLSTATTEVLRKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKISIFPRTT 368 (539)
T ss_dssp CCCEEEECCSCTTTSTTEEEEEEECCEEECSCSSCSEEECHHHHHHHHHTTTTC--------------CCCEEEEEECSC
T ss_pred CcceEEeecCCccCCCCEEEEEEEEEEeccCCCCCcCCCCchhhHHHHhhhhhccccccCCCCCccccCceEEEEEeeeC
Confidence 4679999999986 5689999999762210 11112459999999877 9999 999999987
Q ss_pred CccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhh---CC--CCCccEEEEEEeC
Q psy5567 250 RLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK---DP--TDNTKMSLIFANQ 314 (314)
Q Consensus 250 ~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~---~~--~~~~~v~Li~~~r 314 (314)
. .|.++. ...++++|||||||||||++|+++... .+ ....+++|+||+|
T Consensus 369 ~-------~F~Lp~---------~~~~piImIg~GTGIAPfrsflq~r~~~~~~~~~~~~~~v~LffG~R 422 (539)
T 2qtl_A 369 N-------SFHLPD---------DPSIPIIMVGPGTGIAPFIGFLQHREKLQEQHPDGNFGAMWLFFGCR 422 (539)
T ss_dssp C-------CCCCCS---------STTSCEEEECCGGGGHHHHHHHHHHHHHHHHCTTCCCCCEEEEEEES
T ss_pred C-------CccCCc---------cCCCCEEEEEcCccHHHHHHHHHHHHHHHhccccCCCCCEEEEEEEC
Confidence 3 577765 235789999999999999999998532 11 1257899999997
No 34
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}
Probab=99.08 E-value=7.2e-11 Score=100.95 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=38.5
Q ss_pred CCCCCe-EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 236 MKVGEP-INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 236 l~~Gd~-v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
|++||. +.++||+|++ |.++ ..++++|||||||||||++|++++.+++ .+++|+ ++|
T Consensus 1 L~~Gd~vl~v~gP~G~~-------f~~~-----------~~~~~llIaGG~GItPl~sm~~~l~~~~---~~v~l~-g~r 58 (158)
T 3lrx_A 1 MKEGDSLLNVAGPLGTP-------VPME-----------KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVT 58 (158)
T ss_dssp -----------CCCCCC-------BCCC-----------CCSEEEEEEETTHHHHHHHHHHHHHHHT---CEEEEE-EEC
T ss_pred CcCCCEeeEEECCCCCC-------CccC-----------CCCeEEEEEccCcHHHHHHHHHHHHhcC---CcEEEE-EeC
Confidence 589999 6999999962 3221 2579999999999999999999998764 479999 987
No 35
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}
Probab=98.81 E-value=3.2e-09 Score=89.23 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=38.5
Q ss_pred EEEEccccCccccCCcceeecccCCCCCCCCCCCCeEEEEEcCcCHHHHHHHHHHHhhCCCCCccEEEEEEeC
Q psy5567 242 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314 (314)
Q Consensus 242 v~v~GP~G~~~y~~~g~f~l~~~~~~~~~~~~~~~~vvmIAgGtGItP~l~li~~l~~~~~~~~~v~Li~~~r 314 (314)
++++||+|++ |.+ + ..++++|||||+||||+++|++++.+++ .+++|+ ++|
T Consensus 3 ~~v~GP~G~~-------~~~-~----------~~~~~llIaGG~GiaPl~sm~~~l~~~~---~~v~l~-g~R 53 (142)
T 3lyu_A 3 LNVAGPLGTP-------VPM-E----------KFGKILAIGAYTGIVEVYPIAKAWQEIG---NDVTTL-HVT 53 (142)
T ss_dssp ----CCCSCC-------BCC-C----------CCSEEEEEEETTHHHHHHHHHHHHHHTT---CEEEEE-EEE
T ss_pred eeeeCCCCCC-------ccC-C----------CCCeEEEEECcCcHHHHHHHHHHHHhcC---CcEEEE-EeC
Confidence 5899999963 222 2 2579999999999999999999998765 479999 886
No 36
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}
Probab=97.44 E-value=0.00016 Score=64.13 Aligned_cols=47 Identities=47% Similarity=0.841 Sum_probs=41.9
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+||||.++...+|....|+|||+|.+.+.+.++|+||.++.|.
T Consensus 40 ~~~~pGq~v~l~~~~~g~~~~R~ysi~s~~~~~~~~~l~vk~~~~G~ 86 (243)
T 2eix_A 40 VGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYEKGQ 86 (243)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECCTTCH
T ss_pred cCcCCceEEEEEEeeCCCEEEeeeeecCCCCCCCEEEEEEEEcCCCC
Confidence 45688999999999899999999999998888899999999997654
No 37
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Probab=97.04 E-value=0.00076 Score=60.92 Aligned_cols=43 Identities=53% Similarity=1.009 Sum_probs=39.3
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+||||.++...+|....|+||+.|.+.+.+.++|+||.+
T Consensus 45 ~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~ 87 (275)
T 1umk_A 45 LGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVY 87 (275)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEECCSSCTTCCSEEEEEEECC
T ss_pred cCCCCCcEEEEEEeeCCcEEEeccccCCccCCCCeEEEEEEEe
Confidence 4567899999999889999999999999888889999999998
No 38
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Probab=96.83 E-value=0.0015 Score=58.76 Aligned_cols=43 Identities=47% Similarity=0.765 Sum_probs=39.2
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+||||.++...+|....|+||+.+.+.+.+.++|+||.+
T Consensus 41 ~~~~pGQ~v~l~~~~~g~~~~R~ySi~s~~~~~~~~~l~vk~~ 83 (270)
T 2cnd_A 41 LGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVY 83 (270)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEECCCSCTTCCSEEEEEEECC
T ss_pred cCCCCCCEEEEEeeeCCcEEEEeeccCCCccCCCEEEEEEEEe
Confidence 4578999999999989999999999999887789999999997
No 39
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Probab=96.51 E-value=0.002 Score=57.17 Aligned_cols=46 Identities=30% Similarity=0.405 Sum_probs=37.0
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+||||.++...+|....|+||+.+.+.+ +.++|+||.+++|.
T Consensus 29 ~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~l~~~v~~~~~G~ 74 (248)
T 1fdr_A 29 LPFTAGQFTKLGLEIDGERVQRAYSYVNSPDN-PDLEFYLVTVPDGK 74 (248)
T ss_dssp CCCCTTCEEEEEECC---CEEEEEECCSCTTC-SSEEEEEECCTTCS
T ss_pred CCcCCCCcEEEEccCCCCeeeeeecccCCCCC-CcEEEEEEEeCCCc
Confidence 45689999999998778889999999997765 89999999997654
No 40
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*
Probab=96.47 E-value=0.0034 Score=56.08 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=39.5
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+||||.++...+|....|+||+.+.+.+ +.++|+||.+++|.
T Consensus 29 ~~~~pGq~v~l~~~~~g~~~~R~ySi~s~~~~-~~~~~~i~~~~~G~ 74 (257)
T 2qdx_A 29 LRFKTGQFVMIGLEVDGRPLMRAYSIASPNYE-EHLEFFSIKVPDGP 74 (257)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEEECCSCTTS-SEEEEEEECCTTCT
T ss_pred CccCCCCEEEEEecCCCCceeeeeEeecCCCC-CeEEEEEEEeCCCc
Confidence 45688999999999889889999999997765 89999999987543
No 41
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Probab=96.24 E-value=0.0044 Score=56.14 Aligned_cols=45 Identities=18% Similarity=0.224 Sum_probs=38.5
Q ss_pred cCCcccceEEEEEE-eCCeeeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567 3 LGLPIGQHLSLSAT-INDEFVARAYTPVTSDEHHGYMDLVVKSVPSI 48 (314)
Q Consensus 3 lglpvg~hv~~~~~-~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~g 48 (314)
+...+||||.++.. .+|....|+||+.+.+.+ +.++|+||.++.|
T Consensus 42 ~~~~pGQ~v~l~~~~~~g~~~~R~ySi~s~~~~-~~~~l~v~~~~~G 87 (272)
T 2bgi_A 42 LRFRSGEFVMIGLLDDNGKPIMRAYSIASPAWD-EELEFYSIKVPDG 87 (272)
T ss_dssp CCCCTTCEEEEEEECTTSCEEEEEEECCSCTTC-SEEEEEEECCTTC
T ss_pred CccCCCCEEEEEeccCCCCeeeeeeeeccCCCC-CeEEEEEEEccCC
Confidence 45688999999998 578889999999997765 8999999998754
No 42
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*
Probab=96.07 E-value=0.0065 Score=54.68 Aligned_cols=46 Identities=15% Similarity=0.225 Sum_probs=39.3
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+||||.++...+|....||||+.+.+. .+.++|+||.++.|.
T Consensus 45 ~~~~pGQ~v~l~~~~~~~~~~r~ySi~s~~~-~~~~~~~v~~~~~G~ 90 (271)
T 4fk8_A 45 LRFNNGEFTMVGLEVDGKPLTRAYSIVSPNY-EEHLEFFSIKVQNGP 90 (271)
T ss_dssp CCCCTTCEEEEEEEETTEEEEEEEECCSCTT-SSSEEEEEECCTTCT
T ss_pred CCcCCCCEEEEEccCCCceeeeeEeccCCCC-CCcEEEEEEEECCCc
Confidence 4567999999999999999999999999664 468999999987654
No 43
>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Probab=95.62 E-value=0.005 Score=54.76 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=37.7
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+||||.++. .|....|+||+.+.+.+.+.++|+||.+++|.
T Consensus 42 ~~~~pGQ~v~l~~--~~~~~~R~ySi~s~~~~~~~l~i~vk~~~~G~ 86 (250)
T 1tvc_A 42 VKFEPGQFMDLTI--PGTDVSRSYSPANLPNPEGRLEFLIRVLPEGR 86 (250)
T ss_dssp CSCCSCCEEEECT--TSCSSSEEECCBCCSSSSCCEEEEECCCTTSS
T ss_pred cCcCCCcEEEEEe--CCCccccccccCCCCCCCCeEEEEEEECCCCC
Confidence 4567899999985 45567899999998887899999999998664
No 44
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=95.59 E-value=0.0032 Score=56.75 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=39.1
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+||||.++...++....|+||+.+.+.+.+.++|+||.++.|.
T Consensus 33 ~~~pGQ~v~l~~~~~~~~~~R~ySi~s~~~~~~~l~~~vk~~~~G~ 78 (262)
T 1ep3_B 33 MDLPGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDETT 78 (262)
T ss_dssp CCSTTCEEEECCSCTTCCSCEEEECCEEETTTTEEEEEEECCCTTS
T ss_pred cCCCCceEEEEcCCCCceeeEEEEeeeecCCCCEEEEEEEEecCCc
Confidence 5678999999987656678899999998777899999999998654
No 45
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}
Probab=95.29 E-value=0.013 Score=51.54 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=35.3
Q ss_pred cCCcccceEEEEEEeCCee--eEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~--v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+||||.++...+|.. ..||||+.+.+.+ +.++|+||.+
T Consensus 32 ~~~~pGq~v~l~~~~~~~~~~~~R~ySi~s~~~~-~~~~i~vk~~ 75 (243)
T 4eh1_A 32 LDYQPGQYIGIEVTPEGSDYREIRQYSLSHASNG-REYRISVKRE 75 (243)
T ss_dssp CCCCTTCEEEEEECCSSCSSCEEEEEEBCSCCCS-SCEEEEEECT
T ss_pred CCcCCCCEEEEEEecCCCccccceeeEeccCCCC-CeEEEEEEEe
Confidence 4567899999999887765 4699999996654 7899999998
No 46
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Probab=95.13 E-value=0.016 Score=55.21 Aligned_cols=45 Identities=16% Similarity=0.016 Sum_probs=37.3
Q ss_pred cCCcccceEEEEEEeCCe--eeEEeccCCCCCCCceeEEEEeeeeccc
Q psy5567 3 LGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKSVPSI 48 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~--~v~RpYTPvs~~~~~g~~~llIK~Y~~g 48 (314)
+...+||||.++...+|+ ...|+||+.+.+. .++++|+||.++.|
T Consensus 181 ~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~~G 227 (396)
T 1gvh_A 181 AEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD-GKGYRIAVKREEGG 227 (396)
T ss_dssp CCCCTTCEEEEEECCTTCSSCEEEEEECCSCCC-SSCEEEEEECCTTC
T ss_pred CCCCCCCeEEEEecCCCCccceeecceeccCCC-CCeEEEEEEEcCCC
Confidence 467899999999986664 5789999999766 68999999999743
No 47
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1
Probab=95.09 E-value=0.012 Score=51.47 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=32.3
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+||||.++.. + ...|+||+.+.+.+.+.++|+||.+++|.
T Consensus 28 ~~~~pGq~v~l~~~--~-~~~R~ySi~s~~~~~~~l~l~i~~~~~G~ 71 (232)
T 1qfj_A 28 FSFRAGQYLMVVMD--E-RDKRPFSMASTPDEKGFIELHIGASEINL 71 (232)
T ss_dssp CCCCTTCEEEEESS--S-SCEEEEECCSCTTSTTCEEEEEC------
T ss_pred CCcCCCCEEEEECC--C-CceeeeecCCCCCCCCcEEEEEEEccCCc
Confidence 35678999999874 2 46899999998888899999999998653
No 48
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}
Probab=95.08 E-value=0.016 Score=52.50 Aligned_cols=43 Identities=19% Similarity=0.251 Sum_probs=35.8
Q ss_pred cCCcccceEEEEEEe-----------------------------CCeeeEEeccCCCCCCCceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATI-----------------------------NDEFVARAYTPVTSDEHHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~-----------------------------~g~~v~RpYTPvs~~~~~g~~~llIK~Y 45 (314)
+...+||||.++... ++..+.|+||+.+.+.+.+.++|+||.+
T Consensus 37 ~~~~pGQ~v~l~~p~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~R~ySi~s~~~~~~~l~l~v~~~ 108 (290)
T 2r6h_A 37 MNFKSGSYAQIKIPKYNIRYADYDIQDRFRGDWDKMDAWSLTCKNEEETVRAYSMANYPAEGNIITLNVRIA 108 (290)
T ss_dssp CCCCTTCEEEEEECSEEEEGGGCCCCTTTHHHHHHTTGGGCEEEECSCEEEEEECCSCTTCCSEEEEEEECC
T ss_pred cccCCCceEEEEcccccccccccccchhhcccccccccccccccCCCCcceeeeccCCCCCCCEEEEEEEEe
Confidence 346789999998752 3567899999999888889999999985
No 49
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Probab=94.97 E-value=0.022 Score=54.26 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=36.5
Q ss_pred cCCcccceEEEEEEeCCe--eeEEeccCCCCCCCceeEEEEeeeec
Q psy5567 3 LGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVVKSVP 46 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~--~v~RpYTPvs~~~~~g~~~llIK~Y~ 46 (314)
....+||||.++...+|. ...|+||+.+.+. .++++|+||.++
T Consensus 183 ~~~~pGQ~v~l~~~~~~~~~~~~R~YSi~s~p~-~~~~~i~Vk~~~ 227 (403)
T 1cqx_A 183 VNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN-GRTYRISVKREG 227 (403)
T ss_dssp CCCCTTCEEEEEEEETTTTEEEEEEEECCSCCC-SSCEEEEEECCC
T ss_pred CCCCCCCEEEEEEecCCCCcceeecceecCCCC-CCeEEEEEEECC
Confidence 367899999999997764 5789999998765 689999999986
No 50
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=94.38 E-value=0.036 Score=51.50 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=36.9
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
...+||||.++.. +| ..|+||+.+.+.+.+.++|.||.++.|.
T Consensus 38 ~~~pGQ~v~l~~~-~g--~~R~ySi~s~~~~~~~l~i~Vk~~~~G~ 80 (321)
T 2pia_A 38 PFEAGANLTVAVP-NG--SRRTYSLCNDSQERNRYVIAVKRDSNGR 80 (321)
T ss_dssp CCCTTCEEEEECT-TS--CEEEEECCSCTTCCSEEEEEEECCTTSC
T ss_pred CCCCCCEEEEECC-CC--CcEEEEeCCCCCCCCeEEEEEEEecCCc
Confidence 5678999999875 44 8899999998888899999999998654
No 51
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=94.03 E-value=0.035 Score=51.59 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=36.0
Q ss_pred cCCcccceEEEEEEeCCeeeEEeccCCCCCCCceeEEEEeeeeccce
Q psy5567 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVPSIL 49 (314)
Q Consensus 3 lglpvg~hv~~~~~~~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~gl 49 (314)
+...+|||+.++. .+....|+||+.+.+. .+.++|+||.++.|.
T Consensus 137 ~~~~pGQ~v~l~~--~~~~~~R~ySi~s~~~-~~~l~~~vk~~~~G~ 180 (338)
T 1krh_A 137 IHFLAGQYVNVTL--PGTTETRSYSFSSQPG-NRLTGFVVRNVPQGK 180 (338)
T ss_dssp CCCCTTCEEEEEC--TTSSCEEEEECCSCTT-CSEEEEEEECCTTCH
T ss_pred CCcCCCCeEEEEc--CCCCccccccccCCCC-CCeEEEEEEEcCCCC
Confidence 4567899999975 4545789999999777 789999999998653
No 52
>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*
Probab=93.01 E-value=0.069 Score=50.94 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=34.9
Q ss_pred CCcccceEEEEEEeC--Ce--eeEEeccCCCCCCCceeEEEEeeeec
Q psy5567 4 GLPIGQHLSLSATIN--DE--FVARAYTPVTSDEHHGYMDLVVKSVP 46 (314)
Q Consensus 4 glpvg~hv~~~~~~~--g~--~v~RpYTPvs~~~~~g~~~llIK~Y~ 46 (314)
...+||||.++..+. |. ...|+||+.+.+. .++++|.||.+.
T Consensus 183 ~~~pGQ~v~l~~~~~~~~~~~~~~R~ySi~s~p~-~~~~~i~Vk~~~ 228 (399)
T 4g1v_A 183 PITPGQYITVNTHPIRQENQYDALRHYSLCSAST-KNGLRFAVKMEA 228 (399)
T ss_dssp CCCTTCEEEEEECCCSTTCCSCEEEEEEBSCSCC-TTCEEEEEECCC
T ss_pred CCCCCCEEEEEEeCCCCCCccceeeeecccCCCC-CCeEEEEEEecc
Confidence 567899999999766 54 5789999988665 488999999985
No 53
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*
Probab=92.54 E-value=0.063 Score=49.29 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=34.2
Q ss_pred cCCcccceEEEEEEeC-----Ce-eeEEeccCCCCCCC----ceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATIN-----DE-FVARAYTPVTSDEH----HGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~~-----g~-~v~RpYTPvs~~~~----~g~~~llIK~Y 45 (314)
+...+||||.++.... |. ...|+||+.|.+.+ .+.++|+||.+
T Consensus 59 ~~~~pGQ~v~l~~~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~ 111 (311)
T 3lo8_A 59 VPYWEGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRA 111 (311)
T ss_dssp SCCCTTCEEEEECSSBCTTSTTCBCCCEEEEBCSCTTTTTTSSSEEEEEEECC
T ss_pred CcccCCCEEEEeCCCCccccCCCCCCceeeEecCCCcccCCCCCEEEEEEEEE
Confidence 4578999999987642 44 37899999997753 58999999986
No 54
>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*
Probab=92.38 E-value=0.067 Score=49.31 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=35.4
Q ss_pred cCCcccceEEEEEE---eCCee-eEEeccCCCCCC----CceeEEEEeeeec
Q psy5567 3 LGLPIGQHLSLSAT---INDEF-VARAYTPVTSDE----HHGYMDLVVKSVP 46 (314)
Q Consensus 3 lglpvg~hv~~~~~---~~g~~-v~RpYTPvs~~~----~~g~~~llIK~Y~ 46 (314)
+...+||||.++.. .+|+. ..|+||..|.+. +.+.++|+||.++
T Consensus 64 ~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~p~~~~~~~~~~~l~Vk~~~ 115 (310)
T 3vo2_A 64 IPYREGQSIGIIADGEDKNGKPHKLRLYSIASSALGDFGDSKTVSLCVKRLV 115 (310)
T ss_dssp CCCCTTCEEEEECSSBCTTSCBCCCEEEECCSCTTTTTTSSSEEEEEEECCE
T ss_pred CcccCCCEEEEECCCcCCCCCcCcceeeecCCCCcccCCCCCEEEEEEEEEE
Confidence 45678999999874 45665 479999999775 5789999999974
No 55
>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}
Probab=89.59 E-value=0.16 Score=45.39 Aligned_cols=41 Identities=12% Similarity=0.041 Sum_probs=33.1
Q ss_pred CcccceEEEEEEe-CCeeeEEeccCCCCCCCceeEEEEeeeecc
Q psy5567 5 LPIGQHLSLSATI-NDEFVARAYTPVTSDEHHGYMDLVVKSVPS 47 (314)
Q Consensus 5 lpvg~hv~~~~~~-~g~~v~RpYTPvs~~~~~g~~~llIK~Y~~ 47 (314)
..+||||.++... ++..+.|+||+.+.+. +.+++.+|...+
T Consensus 39 ~~pGQ~v~l~~~~~~~~~~~R~YSi~~~~~--~~~~i~~~~~~~ 80 (252)
T 2gpj_A 39 DQESAYIKLLFPQAGERPLMRTYTIRQQRD--DEIDVDFVLHDT 80 (252)
T ss_dssp CCTTCEEEEEECCTTSCCEEEEEECCEEET--TEEEEEEECCSS
T ss_pred CCCCCeEEEEcccCCCCCCCCceeeeccCC--CEEEEEEEEeCC
Confidence 4789999999885 5678999999998554 678888887754
No 56
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*
Probab=81.87 E-value=0.5 Score=43.21 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=33.2
Q ss_pred cCCcccceEEEEEEe---CCee--------eEEeccCCCCCC----CceeEEEEeeeec
Q psy5567 3 LGLPIGQHLSLSATI---NDEF--------VARAYTPVTSDE----HHGYMDLVVKSVP 46 (314)
Q Consensus 3 lglpvg~hv~~~~~~---~g~~--------v~RpYTPvs~~~----~~g~~~llIK~Y~ 46 (314)
+...+||||.++..- +|+. ..|+||..|.+. +.+.++|+||.++
T Consensus 62 ~~~~pGQ~v~l~~~~~~~~g~~~~~~~~~~~~R~ySi~s~p~~~~~~~~~l~l~vk~~~ 120 (314)
T 2rc5_A 62 YPYVIGQSGGVIPPGEDPEKKAKGLADVGYTVRLYSIASPSYSFGMKEDNIEFIIKRDN 120 (314)
T ss_dssp CCCCTTCEEEEECSSBCHHHHHTTCSCCBCCCEEEECCSCTTCGGGCCCEEEEEEECCB
T ss_pred CcccCCCEEEEECCCCccccCccchhhcCCCceeeeccCCccccCCCCCEEEEEEEEEe
Confidence 345689999998642 1333 679999999775 5789999999963
No 57
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Probab=81.60 E-value=0.77 Score=42.03 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=32.9
Q ss_pred cCCcccceEEEEEEe---CCe-eeEEeccCCCCCC----CceeEEEEeeee
Q psy5567 3 LGLPIGQHLSLSATI---NDE-FVARAYTPVTSDE----HHGYMDLVVKSV 45 (314)
Q Consensus 3 lglpvg~hv~~~~~~---~g~-~v~RpYTPvs~~~----~~g~~~llIK~Y 45 (314)
+...+||||.++..- +|. ...|+||..|.+. +.+.++|+||..
T Consensus 68 ~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySi~s~p~~~~~~~~~~~l~Vk~~ 118 (314)
T 1fnb_A 68 IPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRL 118 (314)
T ss_dssp CCCCTTCEEEEECSSBCTTSSBCCCEEEECCSCSSCTTSSSCEEEEEEECC
T ss_pred CCcCCCCEEEEecCCCCcCCCcCCceeEecCCCCcccCCCCCEEEEEEEEE
Confidence 346789999998642 354 3679999999765 368999999974
No 58
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}
Probab=80.14 E-value=1.4 Score=42.14 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=33.3
Q ss_pred cCCcccceEEEEEE---eCCee-eEEeccCCCCCCC----ceeEEEEeee
Q psy5567 3 LGLPIGQHLSLSAT---INDEF-VARAYTPVTSDEH----HGYMDLVVKS 44 (314)
Q Consensus 3 lglpvg~hv~~~~~---~~g~~-v~RpYTPvs~~~~----~g~~~llIK~ 44 (314)
+...+||||.++.. .+|+. ..|+||+.+.+.+ .+.++|+||.
T Consensus 154 ~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySIas~p~~~~~~~~~l~l~Vk~ 203 (402)
T 2b5o_A 154 LRYLEGQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQ 203 (402)
T ss_dssp CCCCTTCEEEEECSSEETTTEECCCEEEEBCSCTTTTTTSSCEEEEEEEC
T ss_pred CCcCCCCEEEEEecCCCcCCCccCceeeeccCCCccccCCCCEEEEEEEE
Confidence 34678999999864 34664 6799999997753 7899999998
No 59
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*
Probab=78.06 E-value=0.69 Score=42.79 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred EEeCCeeeEEeccCCCCCCCceeEEEEeee
Q psy5567 15 ATINDEFVARAYTPVTSDEHHGYMDLVVKS 44 (314)
Q Consensus 15 ~~~~g~~v~RpYTPvs~~~~~g~~~llIK~ 44 (314)
..++|+.+.|+||+.|.+.+ ++++|+||.
T Consensus 92 ~~~~g~~~~R~ySIaS~p~~-~~l~l~Vk~ 120 (316)
T 3jqq_A 92 SHIKKQRCARLYSISSSNNM-ENLSVAIKI 120 (316)
T ss_dssp -----CCCCEEEEBCSCTTS-SSEEEEEEC
T ss_pred ccCCCcccceeeecccCCCC-CeEEEEEEE
Confidence 44678889999999997765 789999997
No 60
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Probab=76.25 E-value=1.9 Score=39.06 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=32.5
Q ss_pred cCCcccceEEEEEE---eCCee-eEEeccCCCCCC----CceeEEEEeee
Q psy5567 3 LGLPIGQHLSLSAT---INDEF-VARAYTPVTSDE----HHGYMDLVVKS 44 (314)
Q Consensus 3 lglpvg~hv~~~~~---~~g~~-v~RpYTPvs~~~----~~g~~~llIK~ 44 (314)
+...+||||.++.. .+|+. ..|+||..|.+. +.+.++|+||.
T Consensus 53 ~~~~pGQ~v~l~~~~~~~~g~~~~~R~ySias~~~~~~~~~~~l~l~Vk~ 102 (304)
T 2bmw_A 53 LKYIEGQSIGIIPPGVDKNGKPEKLRLYSIASTRHGDDVDDKTISLCVRQ 102 (304)
T ss_dssp CCCCTTCEEEEECSSBCTTSCBCCCEEEEBCSCTTTTTTSSSEEEEEEEC
T ss_pred cccCCCCEEEEEcCCCcccCCCCCCcceecCCCCcccCCCCCEEEEEEEE
Confidence 34678999999864 23553 569999999764 47899999998
No 61
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=59.83 E-value=8.5 Score=32.22 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=46.0
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCC---CCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDE---HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~---~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
....|..|.+.... ....+.|+++.... ..+. .++. ...++.+-|-..++||.+.+..|.|.
T Consensus 82 ~V~~Gs~V~l~~~~--~~~~~~~~iVg~~ead~~~~~----~~IS---------~~SPlG~ALlGk~~GD~v~~~~p~G~ 146 (156)
T 2f23_A 82 VIGLGSVVELEDPL--SGERLSVQVVSPAEANVLDTP----MKIS---------DASPMGKALLGHRVGDVLSLDTPKGK 146 (156)
T ss_dssp CCCTTCEEEEECTT--TCCEEEEEEECGGGCBTTSSS----EEEE---------TTSHHHHHHTTCCTTCEEEEEETTEE
T ss_pred EEEeCcEEEEEEcC--CCCEEEEEEEChhHcCcCCCC----EEEC---------CCCHHHHHHcCCCCCCEEEEEcCCCc
Confidence 46789999887632 23467899987543 2231 2443 67999999999999999999999995
No 62
>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*
Probab=52.65 E-value=1.5 Score=41.77 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=30.5
Q ss_pred CCcccceEEEEEEeCCeeeEEeccCCCCCCC-ceeEEEEeeee
Q psy5567 4 GLPIGQHLSLSATINDEFVARAYTPVTSDEH-HGYMDLVVKSV 45 (314)
Q Consensus 4 glpvg~hv~~~~~~~g~~v~RpYTPvs~~~~-~g~~~llIK~Y 45 (314)
.+++||++.+... ...|+||..|.+.. .+.++|+||.+
T Consensus 145 ~~~~Gq~v~l~~~----~~~R~YSIaSsp~~~~~~i~l~V~~v 183 (374)
T 1ddg_A 145 QLDAEALINLLRP----LTPRLYSIASSQAEVENEVHVTVGVV 183 (374)
T ss_dssp CCCHHHHHHHSCB----CCCEEEEBCCCTTTSCSEEEEEEEEC
T ss_pred CCCHHHHHhhccC----CCCccceecCCCCCCCCEEEEEEEEE
Confidence 4678888777554 36799999998765 79999999986
No 63
>2pn0_A Prokaryotic transcription elongation factor GREA/GREB; structural genomics, APC6349, PSI-2, protein structure initiative; HET: MSE; 1.70A {Nitrosomonas europaea}
Probab=49.90 E-value=26 Score=28.78 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=44.9
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEcccc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 249 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G 249 (314)
....|..|.+.... ....+.|+++...+.+.. .-|+- ...++.+-|-..++||.+.+..|.|
T Consensus 56 ~V~~Gs~V~l~d~~--~g~~~~~~iVg~~ead~~---~~~IS---------~~SPlG~ALlGk~vGD~v~v~~P~G 117 (141)
T 2pn0_A 56 VVTMNSTVRFRVES--SAEEFCLTLVYPKDVDTS---GEKIS---------ILAPVGSALLGLAQGDEIEWPKPGG 117 (141)
T ss_dssp BCCTTCEEEEEETT--TCCEEEEEEECGGGCCSS---SCEEE---------TTSTTHHHHTTCBTTCEEEEECTTS
T ss_pred EEEeCcEEEEEECC--CCCEEEEEEECHhHcCcc---CCEEc---------CCCHHHHHHcCCCCCCEEEEEcCCC
Confidence 36789999887532 235679999876543211 11333 5688999999999999999999999
No 64
>3bmb_A Regulator of nucleoside diphosphate kinase; RNA polymerase, elongation factor, anti-GRE factor, RNA binding protein; 1.91A {Escherichia coli}
Probab=45.29 E-value=25 Score=28.59 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=44.8
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEcccc-Cc
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG-RL 251 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G-~~ 251 (314)
....|..|.+.... ....+.|+++...+.+.. . -|+. ...++.+-|-..++||.+.+..|.| ..
T Consensus 53 ~V~~Gs~V~l~~~~--~g~~~~~~iVg~~ead~~-~--~~IS---------~~SPlG~ALlGk~~GD~v~v~~p~G~~~ 117 (136)
T 3bmb_A 53 VVTMNSRVKFRNLS--DGEVRVRTLVYPAKMTDS-N--TQLS---------VMAPVGAALLGLRVGDSIHWELPGGVAT 117 (136)
T ss_dssp BCCTTCEEEEEETT--TCCEEEEEEECGGGCCCT-T--TEEE---------TTSHHHHHHTTCBTTCEEEEEETTTEEE
T ss_pred EEEeCcEEEEEECC--CCCEEEEEEEChHHcCcc-c--cEec---------CCCHHHHHHcCCCCCCEEEEEcCCCCEE
Confidence 36789999887532 234678999865432110 0 0333 5689999999999999999999999 53
No 65
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=44.34 E-value=20 Score=29.98 Aligned_cols=63 Identities=14% Similarity=0.150 Sum_probs=40.7
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
....|..|.+... +....+.|+++.....+.. . -++. ...++.+-|-..++||.+.+..|.|.
T Consensus 85 ~V~~Gs~V~l~~~--~~~~~~~y~iVg~~ead~~-~--~~IS---------~~SPlG~ALlGk~~GD~v~v~~p~G~ 147 (158)
T 1grj_A 85 RVIFGATVTVLNL--DSDEEQTYRIVGDDEADFK-Q--NLIS---------VNSPIARGLIGKEEDDVVVIKTPGGE 147 (158)
T ss_dssp BCCTTCEEEEEET--TTTEEEEEEEECTTTCBGG-G--TEEE---------SSSHHHHHHTTCBTTCEECC------
T ss_pred EEEeCcEEEEEEC--CCCCEEEEEEECHHHhCCc-C--CEEc---------CCCHHHHHHcCCCCCCEEEEEcCCCc
Confidence 3678999988753 2335689999976543211 1 1333 56899999999999999999999995
No 66
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=38.88 E-value=24 Score=29.56 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=45.0
Q ss_pred CCCCCcEEEEEeeeCCceeeeeeeeecCCCCCceEEEEEEEEeecCCCCCCCCChhchHhhcCCCCCeEEEEccccC
Q psy5567 174 GLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250 (314)
Q Consensus 174 ~~~~GQ~v~l~~~~~~~~~~R~YTp~s~~~~~g~l~l~VK~~~~~~~~~~~~~G~~S~~L~~l~~Gd~v~v~GP~G~ 250 (314)
....|..|.+.. .++ ..+.|+++.....+.. . -++ ....++.+-|-..++||.|.+..|.|.
T Consensus 84 ~V~~Gs~V~l~~-~~g--~~~~y~iVg~~ead~~-~--~~I---------S~~SPlg~ALlGk~vGD~v~v~~P~G~ 145 (158)
T 2p4v_A 84 KVFFGAWVEIEN-DDG--VTHRFRIVGYDEIFGR-K--DYI---------SIDSPMARALLKKEVGDLAVVNTPAGE 145 (158)
T ss_dssp SCSSSCEEEEEC-TTC--CCEEEEBCCSTTCCSS-S--CCB---------CTTSHHHHHSTTCCTTCEEEEECSSCE
T ss_pred EEeccEEEEEEE-CCC--CEEEEEEECHHHcCcc-C--Cee---------cCCCHHHHHhcCCCCCCEEEEEcCCCc
Confidence 467899998876 333 4679999876543210 0 122 256889999999999999999999995
No 67
>1yfb_A Transition state regulatory protein ABRB; , homodimer, bioinformatics, swapped-hairpin barrel, transcription; NMR {Bacillus subtilis} SCOP: b.129.1.3 PDB: 1ysf_A 2k1n_A* 1z0r_A 2ro4_A 2fy9_A 2ro3_A
Probab=29.17 E-value=65 Score=22.63 Aligned_cols=26 Identities=19% Similarity=0.495 Sum_probs=21.1
Q ss_pred ccCCcccceEEEEEEeCCeeeEEeccC
Q psy5567 2 WLGLPIGQHLSLSATINDEFVARAYTP 28 (314)
Q Consensus 2 ~lglpvg~hv~~~~~~~g~~v~RpYTP 28 (314)
.||+..|.-|.+... +|..+++||.|
T Consensus 33 ~Lgi~~Gd~l~i~~~-~~~IiL~p~~p 58 (59)
T 1yfb_A 33 TLGIAEKDALEIYVD-DEKIILKKYKP 58 (59)
T ss_dssp HTTCCTTCEEEEEEE-TTEEEEEECCC
T ss_pred HcCCCCCCEEEEEEE-CCEEEEEECCC
Confidence 478999999888774 56788899977
No 68
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=24.77 E-value=1.9e+02 Score=21.91 Aligned_cols=17 Identities=18% Similarity=0.472 Sum_probs=14.4
Q ss_pred HhhcCCCCCeEEEEccc
Q psy5567 232 FLENMKVGEPINVSGPR 248 (314)
Q Consensus 232 ~L~~l~~Gd~v~v~GP~ 248 (314)
.+..+++|+.+.++|-.
T Consensus 67 ~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 67 LLKKFREGDVIRIKDVN 83 (115)
T ss_dssp GGGTCCTTSEEEEEEEE
T ss_pred hhhcCCCCCEEEEEeeE
Confidence 34679999999999976
Done!