RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5567
(314 letters)
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 223 bits (570), Expect = 3e-72
Identities = 102/235 (43%), Positives = 129/235 (54%), Gaps = 52/235 (22%)
Query: 80 SKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKN 139
TL PD+K PL+L ++ I+HDTR FRF LPS +H
Sbjct: 3 RSTPAITLESPDIKYPLRLIDREIISHDTRRFRFALPSPQH------------------- 43
Query: 140 PIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPV 199
LGLP+GQH+ LSA I+ V R YTP+
Sbjct: 44 --------------------------------ILGLPVGQHIYLSARIDGNLVVRPYTPI 71
Query: 200 TSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEF 259
+SD+ G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I GP G L Y G G+F
Sbjct: 72 SSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQGKGKF 131
Query: 260 HIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
IR KK P V + MIAGGTGITPMLQ++R I KDP D+T L+FANQ
Sbjct: 132 AIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 185
Score = 65.9 bits (161), Expect = 1e-12
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 2 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLP+GQH+ LSA I+ V R YTP++SD+ G++DLV+K
Sbjct: 44 ILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIK 85
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 198 bits (505), Expect = 8e-63
Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 77/230 (33%)
Query: 85 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANI 144
+ ++P+ L+EK INH+TR FRF L E V+G
Sbjct: 3 EPALNPNEYKKFMLREKQIINHNTRLFRFNLHHPEDVVG--------------------- 41
Query: 145 LTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 204
LPIGQH+S+ AT++ + + R YTPV+SD+
Sbjct: 42 ------------------------------LPIGQHMSVKATVDGKEIYRPYTPVSSDDE 71
Query: 205 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 264
GY DL++KVY + G+MSQ+++++ G+ + V GP+G+ Y N
Sbjct: 72 KGYFDLIIKVY---------EKGQMSQYIDHLNPGDFLQVRGPKGQFDYKPN-------- 114
Query: 265 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
V ++ MIAGGTGITPMLQ+ R I K+P + T ++LIFAN
Sbjct: 115 ---------MVKEMGMIAGGTGITPMLQVARAIIKNPKEKTIINLIFANV 155
Score = 72.2 bits (178), Expect = 4e-15
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 3 LGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
+GLPIGQH+S+ AT++ + + R YTPV+SD+ GY DL++K
Sbjct: 40 VGLPIGQHMSVKATVDGKEIYRPYTPVSSDDEKGYFDLIIKVYE 83
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 198 bits (504), Expect = 2e-62
Identities = 79/231 (34%), Positives = 116/231 (50%), Gaps = 59/231 (25%)
Query: 85 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANI 144
L +P ++ +L K E++ D R FRF LPS +
Sbjct: 4 PALSNPRGRIHCRLVAKKELSRDVRLFRFSLPSPDQ------------------------ 39
Query: 145 LTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 204
LGLPIG+H+ + ATI + RAYTP + +
Sbjct: 40 ---------------------------VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDE 72
Query: 205 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAV 264
G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G G F I
Sbjct: 73 IGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTGRGSFVINGK 132
Query: 265 SKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
+ +L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 133 QR-------NARRLAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 176
Score = 63.7 bits (155), Expect = 7e-12
Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 2 WLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 43
LGLPIG+H+ + ATI + RAYTP + + G+ DL+VK
Sbjct: 40 VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVK 81
>1tvc_A Methane monooxygenase component C, methane monooxygenase;
FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR
{Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2
Length = 250
Score = 80.4 bits (199), Expect = 8e-18
Identities = 36/228 (15%), Positives = 70/228 (30%), Gaps = 78/228 (34%)
Query: 85 KTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANI 144
+ ++ ++ +T F + E
Sbjct: 2 RISFGEVGSFEAEVVGLNWVSSNTVQFLLQKRPDE------------------------- 36
Query: 145 LTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 204
F P GQ + L TI V+R+Y+P
Sbjct: 37 ------------------CGNRGVKF----EP-GQFMDL--TIPGTDVSRSYSPANLPNP 71
Query: 205 HGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRA 263
G ++ +++V G+ S +L + +VG+ ++V GP G F ++
Sbjct: 72 EGRLEFLIRVL---------PEGRFSDYLRNDARVGQVLSVKGPLG--------VFGLKE 114
Query: 264 VSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIF 311
+AGGTG+ P++ +VR + + N + + F
Sbjct: 115 RGMAP---------RYFVAGGTGLAPVVSMVRQMQEWTAPN-ETRIYF 152
Score = 29.5 bits (67), Expect = 1.3
Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 8 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
GQ + L TI V+R+Y+P G ++ +++ +P
Sbjct: 47 GQFMDL--TIPGTDVSRSYSPANLPNPEGRLEFLIRVLP 83
>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase,
flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*
Length = 248
Score = 75.8 bits (187), Expect = 3e-16
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 33/164 (20%)
Query: 151 VSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDL 210
V W + S P F GQ L I+ E V RAY+ V + + +
Sbjct: 12 VQNWTDALFSLTVHAPVLPFT-----AGQFTKLGLEIDGERVQRAYSYV-NSPDNPDL-- 63
Query: 211 VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPP 270
+ Y V GK+S L +K G+ + V F + D
Sbjct: 64 --EFYLVTV-----PDGKLSPRLAALKPGDEVQVVSEAAG--------FFVL-----DEV 103
Query: 271 TNLKVTQLSMIAGGTGITPMLQLVRHI-TKDPTDNTKMSLIFAN 313
+ + L M+A GT I P L ++R D + L+ A
Sbjct: 104 PHCE--TLWMLATGTAIGPYLSILRLGKDLDRFK--NLVLVHAA 143
Score = 36.5 bits (85), Expect = 0.007
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 8 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
GQ L I+ E V RAY+ V + + ++ + +VP
Sbjct: 34 GQFTKLGLEIDGERVQRAYSYV-NSPDNPDLEFYLVTVP 71
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding,
ferredoxin, NADH-binding, oxidoreductase; HET: FAD;
1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2
d.15.4.2
Length = 338
Score = 70.9 bits (174), Expect = 4e-14
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 37/156 (23%)
Query: 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217
+ + +P HF L GQ++++ T+ R+Y+ +S + VV+
Sbjct: 127 DIQLDDGQPDIHF----LA-GQYVNV--TLPGTTETRSYS-FSSQPGNRLTGFVVRNV-- 176
Query: 218 NVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVT 276
GKMS++L K G+ ++ +GP G F++R V + P
Sbjct: 177 -------PQGKMSEYLSVQAKAGDKMSFTGPFG--------SFYLRDVKR---P------ 212
Query: 277 QLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFA 312
+ M+AGGTGI P L +++ + + +++ + L+F
Sbjct: 213 -VLMLAGGTGIAPFLSMLQVLEQKGSEH-PVRLVFG 246
>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit;
alpha-beta-alpha sandwich, structural genomics, PSI-2;
HET: FAD; 2.95A {Porphyromonas gingivalis}
Length = 290
Score = 70.0 bits (171), Expect = 5e-14
Identities = 33/226 (14%), Positives = 69/226 (30%), Gaps = 47/226 (20%)
Query: 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVS 152
+ ++ ++ + F +LP E + + + A I P +
Sbjct: 9 EWECEVLSNKNVSTFIKEFVVKLPEGETM--------NFKSGS-----YAQIKIPKYNIR 55
Query: 153 FWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 212
+ + + + F W + N+E RAY+ + L V
Sbjct: 56 Y------ADYDIQDRFRGDWDKMDAWSLTC----KNEEETVRAYSMANYPAEGNIITLNV 105
Query: 213 KVYFKNVHPKFPD------GGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSK 266
++ G S ++ ++K G+ + +SGP G
Sbjct: 106 RIATPPFDRAANKWKAGIKPGISSSYIFSLKPGDKVMMSGPYGDFHI-----------QD 154
Query: 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFA 312
D + I GG G+ P+ + H+ + K+S +
Sbjct: 155 TDAE-------MLYIGGGAGMAPLRAQILHLFRTLKTGRKVSYWYG 193
>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase
superfami oxidoreductase; 2.20A {Escherichia coli} SCOP:
b.43.4.2 c.25.1.1
Length = 232
Score = 68.4 bits (168), Expect = 1e-13
Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 36/150 (24%)
Query: 163 ESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 222
+ F F GQ+L + DE R ++ ++ + G+++L +
Sbjct: 23 VPDAAFSF----RA-GQYLMVVM---DERDKRPFSMASTPDEKGFIELHIGAS------- 67
Query: 223 FPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMI 281
+ ++ + + + I V P G E +R ++ + +I
Sbjct: 68 --EINLYAKAVMDRILKDHQIVVDIPHG--------EAWLRDDEERP---------MILI 108
Query: 282 AGGTGITPMLQLVRHITKDPTDNTKMSLIF 311
AGGTG + ++ + +++ +
Sbjct: 109 AGGTGFSYARSILLTALARNPNR-DITIYW 137
>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural
genomics, national institute allergy and infectious
diseases; HET: FAD; 2.10A {Burkholderia thailandensis}
PDB: 4f7d_A*
Length = 271
Score = 67.1 bits (164), Expect = 5e-13
Identities = 25/161 (15%), Positives = 55/161 (34%), Gaps = 32/161 (19%)
Query: 154 WCSRVVS-APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 212
W + S + F G+ + ++ + + RAY+ V S + ++
Sbjct: 30 WTDTLFSFTCTRDQALRF----NN-GEFTMVGLEVDGKPLTRAYSIV-SPNYEEHL---- 79
Query: 213 KVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTN 272
+ + V G ++ L+++KVG+P+ + G +
Sbjct: 80 EFFSIKV-----QNGPLTSRLQHLKVGDPVLIGKKPT-------GTLVADNLLPGKTLW- 126
Query: 273 LKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
M++ GTG+ P + ++R K+ L
Sbjct: 127 -------MLSTGTGLAPFMSIIRDP-DIYERFDKVVLTHTC 159
Score = 37.9 bits (88), Expect = 0.002
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 8 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
G+ + ++ + + RAY+ V S + +++ V
Sbjct: 50 GEFTMVGLEVDGKPLTRAYSIV-SPNYEEHLEFFSIKVQ 87
>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas
aeruginosa} PDB: 3crz_A* 1a8p_A*
Length = 257
Score = 66.3 bits (162), Expect = 8e-13
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 31/149 (20%)
Query: 150 RVSFWCSRVVS-APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYM 208
V W + S P F GQ + + ++ + RAY+ + +
Sbjct: 10 SVHHWNDTLFSFKTTRNPGLRF----KT-GQFVMIGLEVDGRPLMRAYSIASPNYEEHLE 64
Query: 209 DLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268
+KV G ++ L+++K G+ + VS +
Sbjct: 65 FFSIKV----------PDGPLTSRLQHLKEGDELMVSRK--------PTGTLVH---DDL 103
Query: 269 PPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
P L +++ GTG+ P L +++
Sbjct: 104 LPGK----HLYLLSTGTGMAPFLSVIQDP 128
Score = 35.5 bits (82), Expect = 0.014
Identities = 8/39 (20%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 8 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
GQ + + ++ + RAY+ S + +++ VP
Sbjct: 34 GQFVMIGLEVDGRPLMRAYSIA-SPNYEEHLEFFSIKVP 71
>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD,
iron transpor; HET: FAD HEM; 2.19A {Escherichia coli}
SCOP: a.1.1.2 b.43.4.2 c.25.1.5
Length = 396
Score = 63.2 bits (154), Expect = 2e-11
Identities = 28/163 (17%), Positives = 57/163 (34%), Gaps = 36/163 (22%)
Query: 155 CSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVV 212
S + + + P GQ+L + R Y+ + GY
Sbjct: 168 TSFELEPVDGGAVAEY----RP-GQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGY----- 217
Query: 213 KVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 271
+ K +GG++S +L + VG+ + + P G +F +
Sbjct: 218 -----RIAVKREEGGQVSNWLHNHANVGDVVKLVAPAG--------DFFMAVADDTP--- 261
Query: 272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
+++I+ G G TPML ++ + K +++ A +
Sbjct: 262 ------VTLISAGVGQTPMLAMLDTLAKAGHT-AQVNWFHAAE 297
>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta
sheet, helix-FLA five-stranded parallel beta sheet,
lipid binding protein; HET: HEM FAD DGG; 1.75A
{Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5
PDB: 3ozu_A* 3ozv_B* 3ozw_A*
Length = 403
Score = 63.2 bits (154), Expect = 2e-11
Identities = 31/151 (20%), Positives = 59/151 (39%), Gaps = 30/151 (19%)
Query: 155 CSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYMDLVV 212
S ++ + P +F P GQ+ S++ + R Y+ Y + V
Sbjct: 170 TSFILEPADGGPVVNF----EP-GQYTSVAIDVPALGLQQIRQYSLSDMPNGRTY-RISV 223
Query: 213 KVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 271
K G +S L +++ VG+ + ++ P G FHI +K
Sbjct: 224 K----REGGGPQPPGYVSNLLHDHVNVGDQVKLAAPYG--------SFHIDVDAKTP--- 268
Query: 272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPT 302
+ +I+GG G+TPM+ +++ + P
Sbjct: 269 ------IVLISGGVGLTPMVSMLKVALQAPP 293
>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of
allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio
cholerae o1 biovar el tor}
Length = 243
Score = 60.3 bits (147), Expect = 7e-11
Identities = 28/155 (18%), Positives = 53/155 (34%), Gaps = 35/155 (22%)
Query: 151 VSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDE--FVARAYTPVTSDEHHGYM 208
SF V+ + + P GQ++ + T R Y+ + Y
Sbjct: 19 TSF----VLVPADGGAVLDY----QP-GQYIGIEVTPEGSDYREIRQYSLSHASNGREY- 68
Query: 209 DLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKK 267
++ K + G +S +L N+KVG+ + + P G +F +
Sbjct: 69 ----RISVKREGVGSDNPGLVSHYLHNNVKVGDSVKLYAPAG--------DFFYVERERP 116
Query: 268 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPT 302
+ +I+ G G TPM ++ + K
Sbjct: 117 ----------VVLISAGVGATPMQAILHTLAKQNK 141
>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H)
reductase, flavoproteins, electron transfer,
oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter
capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*
Length = 272
Score = 57.1 bits (138), Expect = 1e-09
Identities = 29/162 (17%), Positives = 53/162 (32%), Gaps = 33/162 (20%)
Query: 154 WCSRVVS-APESEPPFHFAWLGLPIGQHLSLSAT-INDEFVARAYTPVTSDEHHGYMDLV 211
W + S F G+ + + N + + RAY+ + S ++
Sbjct: 27 WTDTLFSFRVTRPQTLRF----RS-GEFVMIGLLDDNGKPIMRAYS-IASPAWDEELEFY 80
Query: 212 VKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPT 271
G ++ L+++KVGE I + G I A+
Sbjct: 81 SIKV---------PDGPLTSRLQHIKVGEQIILRPKPV-------GTLVIDALLPGKR-- 122
Query: 272 NLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
L +A GTGI P L+R + ++ ++ A
Sbjct: 123 ------LWFLATGTGIAPFASLMREP-EAYEKFDEVIMMHAC 157
Score = 28.6 bits (64), Expect = 2.3
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 8 GQHLSLSAT-INDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
G+ + + N + + RAY+ + S ++ VP
Sbjct: 47 GEFVMIGLLDDNGKPIMRAYS-IASPAWDEELEFYSIKVP 85
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer,
alpha-beta barrel, beta sandwich, FAD domain alpha/beta
NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Length = 262
Score = 50.7 bits (122), Expect = 1e-07
Identities = 25/122 (20%), Positives = 48/122 (39%), Gaps = 24/122 (19%)
Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK 237
GQ L L+ + R + + D+ ++ ++ + + L ++
Sbjct: 37 GQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIGDE---------TTGTYKLSKLE 87
Query: 238 VGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
G ++V GP LGNG F + V+ D +I GG G+ P+ +L + +
Sbjct: 88 SGAKVDVMGP------LGNG-FPVAEVTSTDKIL--------IIGGGIGVPPLYELAKQL 132
Query: 298 TK 299
K
Sbjct: 133 EK 134
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 4e-05
Identities = 54/360 (15%), Positives = 101/360 (28%), Gaps = 117/360 (32%)
Query: 15 ATINDEFVARAYTPVTSDEHHG-------------YMDLVVKSVPSILVGVGLIVVVGFI 61
+ D A T ++ D H Y+D + +P ++ + I
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS--I 332
Query: 62 ISA--------IQESKSKKKDKASRSSKKELKTLVDP---------------DVKVPLKL 98
I+ K DK + + L L +P +P L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 99 -----KEKIE---------------INHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKK 138
+ I+ + + +PS L ++ A HR
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS--- 448
Query: 139 NPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTP 198
I+ + + S + P + F+ IG HL
Sbjct: 449 -----IVDHYNIPKTFDSDDLIPPYLDQYFYSH-----IGHHLK---------------- 482
Query: 199 VTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKV---GEPINVSGPRGRLAYLG 255
+ EH M L V+ + FLE K+ N SG L L
Sbjct: 483 --NIEHPERMTLFRMVFL-DFR-----------FLEQ-KIRHDSTAWNASG--SILNTLQ 525
Query: 256 NGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDP-TDNTKMSLIFANQ 314
+F+ + DP V + + + ++ ++ TD +++L+ ++
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAI--------LDFLPKIEENLICSKYTDLLRIALMAEDE 577
Score = 31.7 bits (71), Expect = 0.36
Identities = 49/365 (13%), Positives = 91/365 (24%), Gaps = 97/365 (26%)
Query: 30 TSDEHHGYMDLV------------VKSVPSILVGVGLIVVVGFII-SAIQESKSKK---- 72
T + + Y D++ K V + + + II S S + +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 73 -KDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEH-VLGKQVIGFD 130
K +K ++ ++ + K L I+ + + L F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKF---LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 131 ARH--RQKKKNPIANILTPFQRVSF-----------WC--SRVVSA--PESEPPFHFAWL 173
+ R + + L + V + + + F WL
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 174 GL-----P---IGQHLSLSATINDEFVARAY----TPVTSDE----------HHGYMD-L 210
L P + L I+ + +R+ + Y + L
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 211 VV--KVYFKNVHPKFPDGG-KM---------SQFLENMKVGEPINVSGPRGR-------- 250
+V V F + K+ + FL
Sbjct: 248 LVLLNVQNAKAWNAF-NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 251 LA-YLGNGEFHIRAVSKKD-PPTNLKVT--QLSMIAGGTGITP-MLQLVRHITKDPTDNT 305
L YL +D P L +LS+IA +H+ D
Sbjct: 307 LLKYLD--------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 306 -KMSL 309
+ SL
Sbjct: 359 IESSL 363
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 1e-04
Identities = 49/285 (17%), Positives = 91/285 (31%), Gaps = 114/285 (40%)
Query: 1 AWLGLPIGQHLSLSATINDEFVARAYTPV-------TSDEHHGYMDLVVKSV---PSILV 50
WL P S T + +++ P+ H Y+ + K + P L
Sbjct: 217 EWLENP-------SNTPDKDYLLSI--PISCPLIGVIQLAH--YV-VTAKLLGFTPGELR 264
Query: 51 GV--GLIVVVGFIISAIQESKSKKKDKASRSSKKELKTL---------VDPDVKVPLK-L 98
G +++A+ +++ + S +K + L P+ +P L
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSIL 324
Query: 99 KEKIEINHDTRC-------------------FRFELPSAEHV---L--GKQ--VI----- 127
++ +E N LP+ + V L G + V+
Sbjct: 325 EDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQ 384
Query: 128 ---GFDARHRQKKKNPI----ANILTPF-QR-VSFWCSR--VVSAPESEPPFH------- 169
G + R K K P + I PF +R + F +R V++ PFH
Sbjct: 385 SLYGLNLTLR-KAKAPSGLDQSRI--PFSERKLKF-SNRFLPVAS-----PFHSHLLVPA 435
Query: 170 ------------FAW----LGLPI-----GQHL-SLSATINDEFV 192
++ + +P+ G L LS +I++ V
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Score = 36.2 bits (83), Expect = 0.013
Identities = 33/190 (17%), Positives = 56/190 (29%), Gaps = 53/190 (27%)
Query: 151 VSFWCSR--VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTS----DEH 204
+ + +R +S E +P S + ++F P DE
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLL-----VPTASFFIAS-QLQEQFNKILPEPTEGFAADDEP 54
Query: 205 HGYMDLVVKVYF-----KNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRL-----AYL 254
+LV K F V P K+ QF + + + L YL
Sbjct: 55 TTPAELVGK--FLGYVSSLVEP-----SKVGQFDQVLNLC-----------LTEFENCYL 96
Query: 255 GNGEFHIRAVS--KKDPPTNLKVTQL------SMIAGGTGITPMLQ--LVRHITKDPTDN 304
+ H A +++ T +K +L + I L R + N
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG---EGN 153
Query: 305 TKMSLIFANQ 314
++ IF Q
Sbjct: 154 AQLVAIFGGQ 163
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia
cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Length = 321
Score = 41.8 bits (99), Expect = 2e-04
Identities = 24/120 (20%), Positives = 42/120 (35%), Gaps = 30/120 (25%)
Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENM 236
G +L++ + + R Y+ + + VK + +G S ++
Sbjct: 42 GANLTV--AVPNGSR-RTYSLCNDSQERNRYVIAVK--------RDSNGRGGSISFIDDT 90
Query: 237 KVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRH 296
G+ + VS PR + I ++AGG GITPML + R
Sbjct: 91 SEGDAVEVSLPRNEFPLDKRAKSFI------------------LVAGGIGITPMLSMARQ 132
>2gpj_A Siderophore-interacting protein; structural genomics, joint for
structural genomics, JCSG; HET: FAD; 2.20A {Shewanella
putrefaciens}
Length = 252
Score = 41.2 bits (96), Expect = 2e-04
Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 41/155 (26%)
Query: 145 LTP-FQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEF-VARAYTPVTSD 202
+TP R++ F ++ L E + R YT
Sbjct: 19 ITPHMLRITL---------GGAGLAGFPADQ--ESAYIKLLFPQAGERPLMRTYTIRQQR 67
Query: 203 EHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIR 262
+ +D V G S + + +VGE I + GP +
Sbjct: 68 DDEIDVDFV----------LHDTDGPASSWAKTAQVGELIQIGGPGLKKL---------- 107
Query: 263 AVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
+ T + + + +
Sbjct: 108 ------INFE--ADWFLLAGDMTALPAISVNLAKL 134
>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A
{Leptospira interrogans} PDB: 2rc6_A*
Length = 314
Score = 39.0 bits (91), Expect = 0.001
Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 22/129 (17%)
Query: 193 ARAY----TPVTSDEHHGYMDL-VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGP 247
R Y + ++ + + + + G S ++ ++K G+ + ++GP
Sbjct: 93 VRLYSIASPSYSFGMKEDNIEFIIKRDNIYDENGNIQFKGVCSNYMCDLKPGDEVTMTGP 152
Query: 248 RGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT-- 305
G+ +F + P + +A GTGI P + + + +
Sbjct: 153 SGK-------KFLL--------PNTDFSGDIMFLATGTGIAPFIGMSEELLEHKLIKFTG 197
Query: 306 KMSLIFANQ 314
++L++
Sbjct: 198 NITLVYGAP 206
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 37.2 bits (85), Expect = 0.002
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 9/38 (23%)
Query: 67 ESKSKKKDKASRSSKKELKTLVDPDVKVP-LKLKEKIE 103
E ++ KK +AS LK L D P L +K +E
Sbjct: 18 EKQALKKLQAS------LK-LYADD-SAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.048
Identities = 12/64 (18%), Positives = 19/64 (29%), Gaps = 36/64 (56%)
Query: 124 KQVIGFDARHRQKKKNPIANILTPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSL 183
KQ + KK + L + A +S P A L++
Sbjct: 19 KQAL---------KK--LQASLKLY------------ADDSAP----A---------LAI 42
Query: 184 SATI 187
AT+
Sbjct: 43 KATM 46
>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A
{Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A*
3jqp_A*
Length = 316
Score = 37.9 bits (88), Expect = 0.003
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 211 VVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPP 270
+ K P + G S F++N+K+ + I ++G +G F+ P
Sbjct: 120 IHKYEQTENAPNITNYGYCSGFIKNLKINDDIYLTGA--------HGYFN--------LP 163
Query: 271 TNLKVTQLS--MIAGGTGITPM 290
+ + IA GTGI+P
Sbjct: 164 NDAIQKNTNFIFIATGTGISPY 185
>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics,
PSI-2, protein structure initiative, northeast
structural genomics consortium; 2.60A {Pyrococcus
furiosus}
Length = 158
Score = 36.6 bits (85), Expect = 0.003
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 19/65 (29%)
Query: 236 MKVGEPI-NVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLV 294
MK G+ + NV+GP LG + K + I TGI + +
Sbjct: 1 MKEGDSLLNVAGP------LGTP-VPMEKFGK-----------ILAIGAYTGIVEVYPIA 42
Query: 295 RHITK 299
+ +
Sbjct: 43 KAWQE 47
>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR,
reductase reductase, phycobilisome, thylakoid; HET: FAD;
1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A*
2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A*
1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A*
1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...
Length = 304
Score = 37.0 bits (86), Expect = 0.005
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 29/107 (27%)
Query: 193 ARAY----TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKM-----SQFLENMKVGEPIN 243
R Y T D + L V+ + K P+ G+ S +L +++ G +
Sbjct: 77 LRLYSIASTRHGDDVDDKTISLCVRQ----LEYKHPESGETVYGVCSTYLTHIEPGSEVK 132
Query: 244 VSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPM 290
++GP G+ E P + + + M+AGGTGITPM
Sbjct: 133 ITGPVGK-------EML--------LPDDPEANVI-MLAGGTGITPM 163
>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold,
structural genomics, PSI-2, protein structure
initiative; 2.30A {Pyrococcus furiosus}
Length = 142
Score = 32.7 bits (75), Expect = 0.059
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 18/58 (31%)
Query: 242 INVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITK 299
+NV+GP LG + K + I TGI + + + +
Sbjct: 3 LNVAGP------LGTP-VPMEKFGK-----------ILAIGAYTGIVEVYPIAKAWQE 42
>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase,
FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB:
3lvb_A* 1jb9_A*
Length = 311
Score = 31.2 bits (71), Expect = 0.32
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 23/113 (20%)
Query: 210 LVVKVYFKNVHPKFPDG----GKMSQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVS 265
L V+ + G S FL N K G+ I ++GP G+ +
Sbjct: 106 LCVRRAVYYDPETGKEDPSKNGVCSNFLCNSKPGDKIQLTGPSGK-------IMLL---- 154
Query: 266 KKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMS----LIFANQ 314
P + MIA GTG+ P +R + + N + L
Sbjct: 155 ---PEEDPN-ATHIMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVA 203
>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase
(NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia
oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A*
1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A*
1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*
Length = 314
Score = 30.9 bits (70), Expect = 0.46
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 16/61 (26%)
Query: 230 SQFLENMKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITP 289
S FL ++K G + ++GP G+ E P + T + M+ GTGI P
Sbjct: 133 SNFLCDLKPGAEVKLTGPVGK-------EML--------MPKDPNATII-MLGTGTGIAP 176
Query: 290 M 290
Sbjct: 177 F 177
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG,
structural genomics, PSI-2, protein initiative; 1.90A
{Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Length = 115
Score = 29.0 bits (65), Expect = 0.75
Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 21/74 (28%)
Query: 227 GKMSQFLENMKVGEPINVSGPRGRLAYLGNGE----FHIRAVSKKDPPTNLKVTQLSMIA 282
G ++ L + +G + V G LA H+ Q IA
Sbjct: 55 GDLALLLADTPLGTEMQVQ---GFLAPARKDSVKVKLHL--------------QQARRIA 97
Query: 283 GGTGITPMLQLVRH 296
G G P++ L H
Sbjct: 98 GSMGRDPLVGLEHH 111
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP;
2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Length = 576
Score = 30.5 bits (69), Expect = 0.79
Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 16/68 (23%)
Query: 62 ISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHV 121
+ A + +K K SKK + L P + +L+ +E ++ + C
Sbjct: 13 LKAREGGGGNRKGK----SKKWRQMLQFPHISQCEELRLSLERDYHSLC----------- 57
Query: 122 LGKQVIGF 129
+ IG
Sbjct: 58 -ERNPIGR 64
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 0.96
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 66 QESKSKKKDKASRSSKKELKTLVDPDV----KVPLKLKEKIEINH-DTR 109
Q + ++ D AS+ ++E + D+ + + E++E N + R
Sbjct: 94 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQ---RQSEQVEKNKINNR 139
>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain,
oxidoreductase; 2.00A {Homo sapiens}
Length = 186
Score = 28.9 bits (64), Expect = 1.6
Identities = 5/41 (12%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 280 MIAGGTGITPMLQLVRHI------TKDPTDNTKMSLIFANQ 314
++ G G+TP +++ + K+ + +
Sbjct: 22 LVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWLCR 62
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 29.0 bits (65), Expect = 1.7
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 236 MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268
K P++ S GR+ L +G I + + D
Sbjct: 143 FKDFLPVDPSASNGRIKQLRSGALQIESSEETD 175
>3bso_A RNA dependent RNA polymerase; RNA-dependent RNA polymerase, viral
replication, antiviral E inhibitor, helicase, hydrolase;
HET: CTP; 1.74A {Norwalk virus} PDB: 3bsn_A* 3h5x_A*
3h5y_A* 1sh0_A 1sh2_A 1sh3_A 2b43_A
Length = 510
Score = 28.6 bits (63), Expect = 2.7
Identities = 11/75 (14%), Positives = 19/75 (25%), Gaps = 6/75 (8%)
Query: 82 KELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIG--FDARHRQKKKN 139
K + + +K L +KI R + A + + G D
Sbjct: 155 KNMTPVYTGALKDELVKTDKIYGKIKKRLL-WGSDLATMIRCARAFGGLMDELKTHCVTL 213
Query: 140 PIANILTPFQRVSFW 154
PI +
Sbjct: 214 PIRVGMNMN---EDG 225
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 27.9 bits (62), Expect = 3.6
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 236 MKVGEPINVSGPRGRLAYLGNGEFHIRAVSKKD 268
+ P+ ++ + R NG +I V D
Sbjct: 45 LLNEFPVFITMDKRRFVSQTNGNLYIANVEASD 77
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein
coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl
ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB:
3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Length = 543
Score = 28.2 bits (63), Expect = 3.8
Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 13/64 (20%)
Query: 66 QESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQ 125
+ S ASR +K L L P + L+E +++ + C +Q
Sbjct: 19 RGSFDASSGPASRD-RKYLARLKLPPLSKCEALRESLDLGFEGMCL------------EQ 65
Query: 126 VIGF 129
IG
Sbjct: 66 PIGK 69
>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase;
HET: FAD; 2.50A {Synechococcus SP}
Length = 402
Score = 27.9 bits (62), Expect = 4.6
Identities = 30/136 (22%), Positives = 48/136 (35%), Gaps = 31/136 (22%)
Query: 165 EPPFHFAWLGLPIGQHLSLSATINDEFVARAY----TPVTSDEHHGYMDLVVKVYFKNVH 220
E + G IG R Y T E + + L V+ +
Sbjct: 151 EGDLRYLE-GQSIGIIPPGEDKNGKPHKLRLYSIASTRHGDMEDNKTVSLCVRQ----LE 205
Query: 221 PKFPDGGKM-----SQFLENMKVG-EPINVSGPRGRLAYLGNGEFHIRAVSKKDPPTNLK 274
+ P+ G+ S +L N+ VG + + ++GP G+ E P +
Sbjct: 206 YQDPESGETVYGVCSTYLCNLPVGTDDVKITGPVGK-------EML--------LPDDED 250
Query: 275 VTQLSMIAGGTGITPM 290
T + M+A GTGI P
Sbjct: 251 ATVV-MLATGTGIAPF 265
>1w33_A BbcrAsp-1; complement regulator, complement regulator acquiring
surface protein, LYME borreliosis, factor H binding,
TICK; 2.7A {Borrelia burgdorferi} PDB: 1w3z_A
Length = 181
Score = 26.5 bits (58), Expect = 8.5
Identities = 9/48 (18%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 54 LIVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEK 101
+ + I I+++ ++ S++E K+L+ +K L++K++
Sbjct: 94 IYHISWGIQFQIEQNLELIQNGVENLSQEESKSLLM-QIKSNLEIKQR 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0645 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,858,287
Number of extensions: 290002
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 597
Number of HSP's successfully gapped: 59
Length of query: 314
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 221
Effective length of database: 4,105,140
Effective search space: 907235940
Effective search space used: 907235940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)