RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5567
(314 letters)
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn
(Zea mays) [TaxId: 4577]}
Length = 114
Score = 94.8 bits (235), Expect = 6e-25
Identities = 55/163 (33%), Positives = 77/163 (47%), Gaps = 51/163 (31%)
Query: 93 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVS 152
++ +L K E++ D R FRF LPS +
Sbjct: 2 RIHCRLVAKKELSRDVRLFRFSLPSPDQ-------------------------------- 29
Query: 153 FWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVV 212
LGLPIG+H+ + ATI + RAYTP + + G+ DL+V
Sbjct: 30 -------------------VLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLV 70
Query: 213 KVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 255
KVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G
Sbjct: 71 KVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTG 113
Score = 36.6 bits (84), Expect = 7e-04
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 1 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
LGLPIG+H+ + ATI + RAYTP + + G+ DL+VK
Sbjct: 29 QVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVDEIGHFDLLVKVYF 74
>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 89.9 bits (222), Expect = 5e-23
Identities = 68/170 (40%), Positives = 88/170 (51%), Gaps = 51/170 (30%)
Query: 86 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANIL 145
TL PD+K PL+L ++ I+HDTR FRF LPS
Sbjct: 5 TLESPDIKYPLRLIDREIISHDTRRFRFALPS---------------------------- 36
Query: 146 TPFQRVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHH 205
LGLP+GQH+ LSA I+ V R YTP++SD+
Sbjct: 37 -----------------------PQHILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDK 73
Query: 206 GYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 255
G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I GP G L Y G
Sbjct: 74 GFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 123
Score = 26.7 bits (58), Expect = 2.2
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 1 AWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKSVP 46
LGLP+GQH+ LSA I+ V R YTP++SD+ G++DLV+K
Sbjct: 39 HILGLPVGQHIYLSARIDGNLVVRPYTPISSDDDKGFVDLVIKVYF 84
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 57.6 bits (138), Expect = 5e-11
Identities = 33/58 (56%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
G+F IR KK P V + MIAGGTGITPMLQ++R I KDP D+T L+FANQ
Sbjct: 1 GKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQ 57
>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 111
Score = 52.4 bits (125), Expect = 2e-09
Identities = 15/88 (17%), Positives = 30/88 (34%), Gaps = 6/88 (6%)
Query: 165 EPPFHFAWLGLPIGQHLSLSATINDEF--VARAYTPVTSDEHHGYMDLVVKVYFKNVHPK 222
EP + GQ+ S++ + R Y+ Y V +
Sbjct: 25 EPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPNGRTYRISVKREG----GGP 80
Query: 223 FPDGGKMSQFLENMKVGEPINVSGPRGR 250
P G + +++ VG+ + ++ P G
Sbjct: 81 QPPGYVSNLLHDHVNVGDQVKLAAPYGS 108
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 136
Score = 49.3 bits (117), Expect = 3e-08
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 8/90 (8%)
Query: 169 HFAWLGLPIGQHLSLSATINDEF----VARAY----TPVTSDEHHGYMDLVVKVYFKNVH 220
H + GQ + + D+ R Y + + + L VK
Sbjct: 46 HEGEIPYREGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKSVSLCVKRLIYTND 105
Query: 221 PKFPDGGKMSQFLENMKVGEPINVSGPRGR 250
G S FL ++K G + ++GP G+
Sbjct: 106 AGETIKGVCSNFLCDLKPGAEVKLTGPVGK 135
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Cyanobacterium (Anabaena
sp.), pcc 7119 [TaxId: 1167]}
Length = 133
Score = 47.1 bits (111), Expect = 2e-07
Identities = 14/124 (11%), Positives = 37/124 (29%), Gaps = 10/124 (8%)
Query: 136 KKKNPIANILTPFQRVSFWCS----RVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEF 191
+ P + + + + + + + G IG
Sbjct: 8 RPNAPFIGKVISNEPLVKEGGIGIVQHIKFDLTGGNLKY-IEGQSIGIIPPGVDKNGKPE 66
Query: 192 VARAYTPVTSDEHHGYMDLVVKVYFKNVHP-----KFPDGGKMSQFLENMKVGEPINVSG 246
R Y+ ++ D + + + + G S +L +++ G + ++G
Sbjct: 67 KLRLYSIASTRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITG 126
Query: 247 PRGR 250
P G+
Sbjct: 127 PVGK 130
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays)
[TaxId: 4577]}
Length = 146
Score = 44.2 bits (103), Expect = 3e-06
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 8/59 (13%)
Query: 257 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQ 314
G F I + L+MI GG+GITPM Q+++ + +D P D+T+M L++AN+
Sbjct: 1 GSFVINGKQRNARR-------LAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANR 52
>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain
{Escherichia coli [TaxId: 562]}
Length = 107
Score = 42.8 bits (100), Expect = 4e-06
Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 11/88 (12%)
Query: 165 EPPFHFAWLGLPIGQHLSLSATINDEFV-ARAYTPVTSDEHHGYMDLVVKVYFKNVHPKF 223
EP A GQ+L + +T + K
Sbjct: 27 EPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYRI---------AVKR 77
Query: 224 PDGGKMSQFL-ENMKVGEPINVSGPRGR 250
+GG++S +L + VG+ + + P G
Sbjct: 78 EEGGQVSNWLHNHANVGDVVKLVAPAGD 105
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Azotobacter vinelandii
[TaxId: 354]}
Length = 99
Score = 41.9 bits (98), Expect = 7e-06
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 17/103 (16%)
Query: 151 VSFWCSRVVS-APESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 209
V W + S P F GQ + + ++ + RAY+ + +
Sbjct: 11 VHHWNDTLFSFKTTRNPSLRFEN-----GQFVMIGLEVDGRPLMRAYSIASPNYEEHLEF 65
Query: 210 LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGRL 251
+KV G ++ L+++K G+ + VS P G L
Sbjct: 66 FSIKVQ----------NGPLTSRLQHLKEGDELMVSRKPTGTL 98
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
[TaxId: 1167]}
Length = 162
Score = 43.0 bits (100), Expect = 7e-06
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMS 308
DP N+ M+AGGTGITPM + + KD
Sbjct: 3 DDPEANV-----IMLAGGTGITPMRTYLWRMFKDAERAANPE 39
>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC
{Methylococcus capsulatus [TaxId: 414]}
Length = 109
Score = 39.7 bits (92), Expect = 5e-05
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 178 GQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMK 237
GQ + L TI V+R+Y+P G ++ +++V P+G + +
Sbjct: 47 GQFMDL--TIPGTDVSRSYSPANLPNPEGRLEFLIRVL--------PEGRFSDYLRNDAR 96
Query: 238 VGEPINVSGPRG 249
VG+ ++V GP G
Sbjct: 97 VGQVLSVKGPLG 108
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 99
Score = 39.3 bits (91), Expect = 5e-05
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 15/100 (15%)
Query: 150 RVSFWCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMD 209
+V W + S P F GQ L I+ E V RAY+ V S ++
Sbjct: 10 KVQNWTDALFSLTVHAPVLPF-----TAGQFTKLGLEIDGERVQRAYSYVNSPDNPDLEF 64
Query: 210 LVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 249
+V V GK+S L +K G+ + V
Sbjct: 65 YLVTV----------PDGKLSPRLAALKPGDEVQVVSEAA 94
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 101
Score = 39.4 bits (91), Expect = 6e-05
Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 16/93 (17%)
Query: 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217
V+ + GQ L L+ + R + + D+ ++ ++
Sbjct: 23 VLKGTLVDEMDL-------PGQFLHLAVPNGAMLLRRPISISSWDKRAKTCTILYRIG-- 73
Query: 218 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250
D + L ++ G ++V GP G
Sbjct: 74 -------DETTGTYKLSKLESGAKVDVMGPLGN 99
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin
reductase) {Azotobacter vinelandii [TaxId: 354]}
Length = 158
Score = 39.6 bits (91), Expect = 1e-04
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 278 LSMIAGGTGITPMLQLVRHITKDPTDNTKM 307
L M++ GTG+ P + L++ +
Sbjct: 10 LYMLSTGTGLAPFMSLIQDPEVYERFEKVV 39
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 39.1 bits (90), Expect = 1e-04
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSL 309
+IAGGTG + ++ +
Sbjct: 10 LIAGGTGFSYARSILLTALARNPNRDITIY 39
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 142
Score = 39.1 bits (90), Expect = 1e-04
Identities = 8/35 (22%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
+I+GG G+TPM+ +++ + P ++ + +
Sbjct: 10 LISGGVGLTPMVSMLKVALQAP--PRQVVFVHGAR 42
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 38.3 bits (88), Expect = 3e-04
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 280 MIAGGTGITPMLQLVRHITKDPTDN 304
M+AGGTGI P L +++ + + +++
Sbjct: 10 MLAGGTGIAPFLSMLQVLEQKGSEH 34
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin
reductase) {Escherichia coli [TaxId: 562]}
Length = 148
Score = 38.1 bits (87), Expect = 3e-04
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 278 LSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQ 314
L M+A GT I P L ++R KD + L+ A +
Sbjct: 9 LWMLATGTAIGPYLSILRLG-KDLDRFKNLVLVHAAR 44
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 160
Score = 37.4 bits (86), Expect = 6e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 280 MIAGGTGITPMLQLVRHITKDPTDNT 305
+I GG G+ P+ +L + + K T
Sbjct: 13 IIGGGIGVPPLYELAKQLEKTGCQMT 38
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C,
MmoC {Methylococcus capsulatus [TaxId: 414]}
Length = 141
Score = 37.3 bits (85), Expect = 6e-04
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 280 MIAGGTGITPMLQLVRHITKDPTDN 304
+AGGTG+ P++ +VR + + N
Sbjct: 13 FVAGGTGLAPVVSMVRQMQEWTAPN 37
>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 103
Score = 36.6 bits (84), Expect = 6e-04
Identities = 22/156 (14%), Positives = 39/156 (25%), Gaps = 63/156 (40%)
Query: 94 VPLKLKEKIEINHDTRCFRFELPSAEHVLGKQVIGFDARHRQKKKNPIANILTPFQRVSF 153
+ LK+ K +I D F P +
Sbjct: 9 LRLKIASKEKIARDIWSFELTDPQGAPL-------------------------------- 36
Query: 154 WCSRVVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVK 213
PPF G +L+++ R Y+ + + V
Sbjct: 37 ------------PPF-------EAGANLTVAVPNGSR---RTYSLCNDSQERNRYVIAV- 73
Query: 214 VYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPR 248
+ +G S ++ G+ + VS PR
Sbjct: 74 -------KRDSNGRGGSISFIDDTSEGDAVEVSLPR 102
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 37.2 bits (85), Expect = 7e-04
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 280 MIAGGTGITPMLQLVRHITKDP 301
+I+ G G TPML ++ + K
Sbjct: 11 LISAGVGQTPMLAMLDTLAKAG 32
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 37.1 bits (85), Expect = 8e-04
Identities = 8/34 (23%), Positives = 10/34 (29%)
Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFAN 313
MI GTGI P ++ D
Sbjct: 11 MIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNP 44
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 36.8 bits (84), Expect = 0.001
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 267 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT 305
KDP + M+ GTGI P + + + D+
Sbjct: 5 KDPNATI-----IMLGTGTGIAPFRSFLWKMFFEKHDDY 38
>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 35.6 bits (81), Expect = 0.001
Identities = 17/96 (17%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 159 VSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFKN 218
V P F++ GQ+L + + DE R ++ ++ + G+++L +
Sbjct: 17 VYRVRIVPDAAFSF---RAGQYLMV---VMDERDKRPFSMASTPDEKGFIELHIG----- 65
Query: 219 VHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYL 254
++ + I V P G A+L
Sbjct: 66 ---ASEINLYAKAVMDRILKDHQIVVDIPHGE-AWL 97
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 36.4 bits (83), Expect = 0.001
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 5/30 (16%)
Query: 268 DPPTNLKVTQLSMIAGGTGITPMLQLVRHI 297
DP MIA GTG+ P +R +
Sbjct: 1 DPNATH-----IMIATGTGVAPFRGYLRRM 25
>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 100
Score = 35.5 bits (81), Expect = 0.001
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 16/93 (17%)
Query: 158 VVSAPESEPPFHFAWLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYMDLVVKVYFK 217
+ + +P HF GQ++++ T+ R+Y+ + + +V V
Sbjct: 22 DIQLDDGQPDIHF-----LAGQYVNV--TLPGTTETRSYSFSSQPGNRLTGFVVRNVPQG 74
Query: 218 NVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 250
+ K G+ ++ +GP G
Sbjct: 75 KMSE---------YLSVQAKAGDKMSFTGPFGS 98
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 120
Score = 34.1 bits (77), Expect = 0.005
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 280 MIAGGTGITPMLQLVRHITKDPTDNTKM 307
++AGG GITPML + R + + + ++
Sbjct: 13 LVAGGIGITPMLSMARQLRAEGLRSFRL 40
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 33.2 bits (75), Expect = 0.017
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 280 MIAGGTGITPMLQLVRH 296
++ GTGI P +
Sbjct: 14 LVGPGTGIAPFRSFWQQ 30
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 32.3 bits (73), Expect = 0.034
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 280 MIAGGTGITP---MLQLVRHITKDPTDNTKMSLIF 311
M+ GTGI P +Q + + + + L +
Sbjct: 12 MVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYY 46
>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Maize (Zea mays), root
isoform [TaxId: 4577]}
Length = 157
Score = 28.0 bits (62), Expect = 0.96
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 226 GGKMSQFLENMKVGEPINVSGPRGRLAYL 254
G S FL N K G+ I ++GP G++ L
Sbjct: 126 NGVCSNFLCNSKPGDKIQLTGPSGKIMLL 154
>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo
sapiens), heart isoform (H chain) [TaxId: 9606]}
Length = 172
Score = 27.9 bits (61), Expect = 1.2
Identities = 14/59 (23%), Positives = 24/59 (40%)
Query: 27 TPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELK 85
+G + V S+P IL GL V+ + + ++ KK +K+LK
Sbjct: 113 VSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLK 171
>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 172
Score = 27.5 bits (60), Expect = 1.6
Identities = 14/60 (23%), Positives = 24/60 (40%)
Query: 26 YTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELK 85
HG + V S+P +L G+ V ++A +E KK + +K L+
Sbjct: 112 PVTTLVKGFHGIKEEVFLSIPCVLGESGITDFVKVNMTAEEEGLLKKSADTLWNMQKNLE 171
>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish
(Squalus acanthias) [TaxId: 7797]}
Length = 169
Score = 27.1 bits (59), Expect = 2.0
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 31 SDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELK 85
+ +G D V S+P +L G+ +V + +E + +K +K+LK
Sbjct: 114 VKDFYGIKDNVFLSLPCVLNDHGISNIVKMKLKPNEEQQLQKSATTLWDIQKDLK 168
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 168
Score = 27.1 bits (59), Expect = 2.1
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 26 YTPVTSDEHHGYMDLVVKSVPSILVGVGLIVVVGFIISAIQESKSKKKDKASRSSKKELK 85
D + V VP + G+ VV + + +K + + +E+K
Sbjct: 107 TLSAYVDGEFDGIRDVCIGVPVKIGRDGIEEVVSIELDKDEIIAFRKSAEIIKKYCEEVK 166
Query: 86 TL 87
L
Sbjct: 167 NL 168
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.402
Gapped
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,169,211
Number of extensions: 54328
Number of successful extensions: 156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 45
Length of query: 314
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,240,546
Effective search space: 284085034
Effective search space used: 284085034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.9 bits)