Query psy5568
Match_columns 685
No_of_seqs 416 out of 2030
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 20:49:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03206 phosphoribosylformylg 100.0 1E-140 3E-145 1265.5 51.8 562 105-680 4-911 (1307)
2 KOG1907|consensus 100.0 4E-140 8E-145 1171.0 32.4 562 105-680 22-925 (1320)
3 PRK05297 phosphoribosylformylg 100.0 1E-131 3E-136 1198.6 54.6 563 90-680 1-904 (1290)
4 TIGR01735 FGAM_synt phosphorib 100.0 8E-129 2E-133 1171.3 48.9 566 93-680 2-924 (1310)
5 TIGR01857 FGAM-synthase phosph 100.0 8E-101 2E-105 915.9 44.2 519 95-680 7-882 (1239)
6 COG0046 PurL Phosphoribosylfor 100.0 1.5E-97 3E-102 843.2 33.6 377 225-680 2-667 (743)
7 PRK01213 phosphoribosylformylg 100.0 1.3E-67 2.9E-72 616.8 32.2 359 238-680 6-644 (724)
8 TIGR01736 FGAM_synth_II phosph 100.0 9.1E-60 2E-64 550.5 32.8 352 247-680 1-635 (715)
9 PRK14090 phosphoribosylformylg 100.0 3.9E-55 8.4E-60 496.1 17.5 169 456-679 396-565 (601)
10 PHA03366 FGAM-synthase; Provis 100.0 5.8E-51 1.3E-55 494.8 33.5 209 455-680 688-898 (1304)
11 TIGR01739 tegu_FGAM_synt herpe 100.0 4E-49 8.6E-54 477.2 28.9 206 456-680 593-799 (1202)
12 cd02203 PurL_repeat1 PurL subu 100.0 5E-38 1.1E-42 334.5 23.7 233 271-680 1-241 (313)
13 cd02193 PurL Formylglycinamide 100.0 1.9E-32 4E-37 286.5 20.6 207 456-680 1-218 (272)
14 cd02204 PurL_repeat2 PurL subu 100.0 6.7E-30 1.4E-34 264.8 21.6 206 456-681 13-219 (264)
15 KOG1907|consensus 100.0 1.6E-31 3.6E-36 300.9 5.1 94 1-95 362-458 (1320)
16 TIGR01735 FGAM_synt phosphorib 99.9 6.5E-24 1.4E-28 259.2 19.8 205 456-680 289-527 (1310)
17 PRK14090 phosphoribosylformylg 99.9 6.7E-22 1.5E-26 225.5 21.8 193 456-680 61-258 (601)
18 cd00396 PurM-like AIR (aminoim 99.9 2.5E-21 5.5E-26 196.0 17.0 163 458-680 2-164 (222)
19 cd02192 PurM-like3 AIR synthas 99.8 2.1E-19 4.5E-24 189.6 18.2 184 456-680 46-231 (283)
20 cd02195 SelD Selenophosphate s 99.8 4.1E-19 8.8E-24 187.5 17.1 191 456-680 53-245 (287)
21 TIGR03267 methan_mark_2 putati 99.8 5.1E-19 1.1E-23 189.8 16.9 186 456-680 56-242 (323)
22 PRK05297 phosphoribosylformylg 99.8 2.9E-19 6.2E-24 219.3 13.8 206 455-680 282-521 (1290)
23 cd02196 PurM PurM (Aminoimidaz 99.8 5.4E-18 1.2E-22 179.7 16.9 196 457-680 21-233 (297)
24 PLN03206 phosphoribosylformylg 99.8 1.9E-19 4E-24 219.2 6.3 94 1-95 344-438 (1307)
25 cd02197 HypE HypE (Hydrogenase 99.8 1.3E-17 2.9E-22 176.3 19.3 190 456-680 37-232 (293)
26 cd02194 ThiL ThiL (Thiamine-mo 99.8 3.6E-17 7.7E-22 172.5 19.6 187 456-680 35-232 (291)
27 TIGR01379 thiL thiamine-monoph 99.8 2.4E-17 5.2E-22 176.1 18.4 188 456-680 36-233 (317)
28 TIGR01736 FGAM_synth_II phosph 99.8 7.3E-18 1.6E-22 198.2 15.6 203 456-680 69-276 (715)
29 TIGR02124 hypE hydrogenase exp 99.7 8.2E-17 1.8E-21 172.4 20.8 190 456-680 32-227 (320)
30 TIGR00878 purM phosphoribosyla 99.7 4.4E-17 9.6E-22 175.5 15.9 198 456-680 52-266 (332)
31 PRK05731 thiamine monophosphat 99.7 6.6E-17 1.4E-21 172.7 16.6 186 456-680 37-234 (318)
32 PRK01213 phosphoribosylformylg 99.7 5.8E-17 1.2E-21 190.9 17.4 203 456-680 81-287 (724)
33 cd06061 PurM-like1 AIR synthas 99.7 8.3E-17 1.8E-21 170.0 15.4 178 472-680 55-239 (298)
34 PRK05385 phosphoribosylaminoim 99.7 4.4E-16 9.5E-21 167.3 14.8 182 472-680 73-264 (327)
35 cd02691 PurM-like2 AIR synthas 99.6 8E-14 1.7E-18 151.2 19.3 191 456-680 47-243 (346)
36 COG2144 Selenophosphate synthe 99.6 1.6E-14 3.4E-19 149.6 11.3 179 458-678 56-236 (324)
37 PRK00943 selenophosphate synth 99.6 6.7E-14 1.5E-18 151.8 16.3 185 458-680 63-251 (347)
38 TIGR00476 selD selenium donor 99.6 2E-13 4.4E-18 148.0 20.0 189 456-680 62-262 (347)
39 COG0046 PurL Phosphoribosylfor 99.5 2E-14 4.4E-19 165.6 11.4 203 456-680 95-302 (743)
40 PRK14105 selenophosphate synth 99.5 3.1E-12 6.7E-17 138.7 19.4 188 458-682 60-268 (345)
41 COG0309 HypE Hydrogenase matur 99.4 6.9E-13 1.5E-17 141.0 8.9 175 476-681 70-249 (339)
42 TIGR01857 FGAM-synthase phosph 99.3 5.5E-12 1.2E-16 153.7 11.7 195 455-680 311-523 (1239)
43 PLN02557 phosphoribosylformylg 99.2 3.7E-10 7.9E-15 123.8 17.5 183 471-680 116-310 (379)
44 COG0611 ThiL Thiamine monophos 98.9 7E-09 1.5E-13 111.0 13.4 168 470-680 56-231 (317)
45 PF02769 AIRS_C: AIR synthase 98.9 1.5E-09 3.2E-14 103.2 6.1 81 598-681 5-88 (153)
46 PF00586 AIRS: AIR synthase re 98.8 1.1E-08 2.4E-13 90.8 6.7 67 470-551 30-96 (96)
47 cd02193 PurL Formylglycinamide 98.6 9E-09 2E-13 108.2 -0.6 78 356-452 1-80 (272)
48 COG0150 PurM Phosphoribosylami 97.6 0.00041 8.8E-09 74.8 11.5 176 479-682 83-271 (345)
49 COG1973 HypE Hydrogenase matur 97.5 0.00029 6.3E-09 75.2 8.2 187 458-680 124-318 (449)
50 PF00586 AIRS: AIR synthase re 97.2 2E-05 4.4E-10 70.0 -3.8 66 323-408 1-66 (96)
51 COG0709 SelD Selenophosphate s 97.2 0.0025 5.4E-08 68.2 10.7 184 456-680 61-251 (346)
52 cd02203 PurL_repeat1 PurL subu 96.5 0.0013 2.7E-08 70.8 2.0 52 456-508 26-77 (313)
53 cd00396 PurM-like AIR (aminoim 95.9 0.0013 2.8E-08 66.9 -1.3 49 358-408 2-50 (222)
54 TIGR01379 thiL thiamine-monoph 95.7 0.0037 8E-08 67.3 0.9 68 315-406 16-88 (317)
55 PRK05731 thiamine monophosphat 95.2 0.0067 1.4E-07 65.3 0.8 64 320-406 22-90 (318)
56 PRK06423 phosphoribosylformylg 94.9 0.036 7.7E-07 47.4 4.2 44 164-207 3-69 (73)
57 TIGR03267 methan_mark_2 putati 94.8 0.022 4.8E-07 61.7 3.4 93 280-406 12-105 (323)
58 TIGR01739 tegu_FGAM_synt herpe 93.9 0.38 8.2E-06 60.9 11.9 130 520-680 224-360 (1202)
59 PRK05974 phosphoribosylformylg 93.7 0.079 1.7E-06 46.1 4.0 28 165-192 4-31 (80)
60 KOG3939|consensus 93.7 0.39 8.5E-06 50.1 9.5 102 470-593 26-128 (312)
61 KOG0237|consensus 93.7 0.21 4.4E-06 57.6 8.1 173 477-680 515-704 (788)
62 TIGR00302 phosphoribosylformyl 93.4 0.095 2.1E-06 45.6 4.0 29 164-192 3-31 (80)
63 cd02195 SelD Selenophosphate s 93.0 0.031 6.6E-07 59.5 0.2 66 319-408 37-102 (287)
64 cd02194 ThiL ThiL (Thiamine-mo 92.4 0.05 1.1E-06 57.7 0.8 81 302-408 4-89 (291)
65 PF02700 PurS: Phosphoribosylf 92.1 0.18 4E-06 44.0 3.9 43 165-207 4-75 (80)
66 cd02192 PurM-like3 AIR synthas 88.3 0.14 3.1E-06 54.5 0.1 68 316-407 28-96 (283)
67 PRK00943 selenophosphate synth 85.5 0.41 8.9E-06 52.5 1.7 81 299-406 21-108 (347)
68 PRK06423 phosphoribosylformylg 83.8 5.8 0.00013 33.9 7.6 43 105-150 22-66 (73)
69 PRK05974 phosphoribosylformylg 83.8 5 0.00011 34.9 7.3 60 91-150 6-72 (80)
70 cd02204 PurL_repeat2 PurL subu 82.1 0.21 4.6E-06 52.0 -2.3 52 355-408 12-63 (264)
71 PRK05783 hypothetical protein; 79.8 2.3 4.9E-05 37.7 3.7 29 165-193 6-34 (84)
72 cd06061 PurM-like1 AIR synthas 79.6 1.7 3.8E-05 46.1 3.6 83 297-407 4-88 (298)
73 TIGR00476 selD selenium donor 78.4 0.88 1.9E-05 49.9 0.9 82 299-404 21-107 (347)
74 TIGR00302 phosphoribosylformyl 78.0 11 0.00025 32.7 7.6 60 91-150 6-72 (80)
75 COG1828 PurS Phosphoribosylfor 73.2 4.6 0.0001 35.7 3.8 28 165-192 5-32 (83)
76 cd02691 PurM-like2 AIR synthas 66.7 2 4.2E-05 47.4 0.2 68 314-406 27-95 (346)
77 PHA03366 FGAM-synthase; Provis 59.7 30 0.00065 44.8 8.7 140 515-680 309-451 (1304)
78 TIGR00878 purM phosphoribosyla 57.8 2 4.3E-05 46.9 -1.8 87 302-408 15-107 (332)
79 PF02700 PurS: Phosphoribosylf 55.8 37 0.00081 29.7 6.2 62 89-150 4-72 (80)
80 PF04539 Sigma70_r3: Sigma-70 52.1 13 0.00028 31.4 2.7 21 254-274 8-28 (78)
81 PRK05385 phosphoribosylaminoim 51.1 2.2 4.9E-05 46.3 -2.7 75 314-408 28-107 (327)
82 COG1828 PurS Phosphoribosylfor 49.1 70 0.0015 28.4 6.7 61 90-150 6-73 (83)
83 cd02197 HypE HypE (Hydrogenase 48.8 14 0.0003 39.4 2.9 76 299-406 5-86 (293)
84 TIGR02124 hypE hydrogenase exp 40.1 13 0.00028 40.2 1.1 63 316-406 14-81 (320)
85 PRK09389 (R)-citramalate synth 36.8 68 0.0015 37.2 6.2 52 231-282 318-371 (488)
86 PRK11858 aksA trans-homoaconit 34.7 73 0.0016 35.6 5.9 49 231-279 320-371 (378)
87 PF07587 PSD1: Protein of unkn 33.9 38 0.00082 36.0 3.3 32 250-281 235-266 (266)
88 PRK00754 signal recognition pa 31.3 69 0.0015 29.1 4.0 31 282-312 59-90 (95)
89 PLN03228 methylthioalkylmalate 27.5 1.1E+02 0.0023 35.8 5.8 56 231-286 427-484 (503)
90 COG2144 Selenophosphate synthe 26.5 1.2E+02 0.0025 33.2 5.3 51 376-449 76-126 (324)
91 COG2860 Predicted membrane pro 26.2 17 0.00038 37.3 -0.7 26 365-390 115-141 (209)
92 PF00046 Homeobox: Homeobox do 25.9 80 0.0017 24.8 3.2 32 246-279 6-37 (57)
93 PRK05783 hypothetical protein; 24.9 3.8E+02 0.0083 23.8 7.4 62 89-150 6-75 (84)
94 PF03471 CorC_HlyC: Transporte 24.1 30 0.00065 29.7 0.4 40 232-271 12-51 (81)
95 PTZ00323 NAD+ synthase; Provis 22.8 1E+02 0.0023 33.4 4.3 35 247-286 235-269 (294)
96 PF07583 PSCyt2: Protein of un 22.3 1.6E+02 0.0034 30.4 5.3 51 236-286 7-59 (208)
97 PF12818 Tegument_dsDNA: dsDNA 21.5 1.1E+03 0.023 25.7 12.0 135 516-680 58-197 (282)
98 COG3448 CBS-domain-containing 21.2 75 0.0016 34.7 2.7 60 195-256 166-230 (382)
No 1
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=1.4e-140 Score=1265.47 Aligned_cols=562 Identities=51% Similarity=0.873 Sum_probs=518.7
Q ss_pred HHHHhc-CCCCcceEEEEEEEEEecCCCCCHHHHHHHHhhccccccccccCCCCcc---C--C-CCcEEEEecCCCcCCh
Q psy5568 105 TKKLKA-VPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNF---K--D-NSNVIEVGPRLNFSTP 177 (685)
Q Consensus 105 l~~l~~-~~~~V~~Vrte~vY~Vel~~~Ls~ee~~~L~~LLs~~~~~~~~~~~s~l---~--~-~~~~ieV~PR~G~~sp 177 (685)
+++|++ ..+.|.+|+++|||+|++...|++++.++|.|||.+++........+++ . . +..+++|+||+||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~pr~~~~sp 83 (1307)
T PLN03206 4 LRKVQTKVSNDIVSIETEQCFNVGLESPLSAEKLETLKWLLRETFEPENLGTESFLEAKKSEGLNAVVVEVGPRLSFTTA 83 (1307)
T ss_pred HHHHhhhcCCCceEEEEEEEEEEEcCCCCCHHHHHHHHHHhccccCcccccccccccccccCCCceeEEEEeCCCCCCCc
Confidence 567774 6778999999999999998899999999999999955322111111112 1 1 2268999999999999
Q ss_pred hhhhHHHHHHHcCcch-------------------------hhhhhcccccceeecCcccccCCCCCCCCceEeeccCCC
Q psy5568 178 FCSNVLSICQSIQLHS-------------------------CAESFYDRMTECVYSSPLTSFNHGIKPDPWFYVDVMGKG 232 (685)
Q Consensus 178 wss~a~~i~~~~gl~~-------------------------~~~~L~d~mte~~~~~~~~~f~~~~~p~~~~~v~l~~~~ 232 (685)
||||||+|||+|||.. +.++|||||||++|..+...|....+|+|+.+||+++.+
T Consensus 84 wss~a~~i~~~~gl~~i~rier~~~~~~~~~~~~~~~~~~~~~~~~~drmte~~~~~~~~~~~~~~~p~~~~~v~~~~~~ 163 (1307)
T PLN03206 84 WSTNAVSICSACGLTEVTRLERSRRYLLFSSSPLDESQINAFAAMVHDRMTECVYPQPLTSFESGVVPEPVYTVPVMEEG 163 (1307)
T ss_pred chhHHHHHHHHcCCcceEEEEeeEEEEEecCCCCCHHHHHHHHHhcCCCCcceecCCchHhhcCCCCCCCceEECCCCCC
Confidence 9999999999999974 456899999999999866555555489999999999999
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHhHHHHhhhhcc
Q psy5568 233 KVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTK 312 (685)
Q Consensus 233 ~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~ 312 (685)
+++|+++|+++|||||++||+||++||++.|+|||||+|||||||+||||||||||||+|+|||+++++|||+|||.|++
T Consensus 164 ~~~L~~~~~~~gLAl~~~ei~~~~~~F~~~~~R~PTd~El~~~aq~~SEHCRHk~F~~~~~id~~~~~~sL~~mi~~t~~ 243 (1307)
T PLN03206 164 RAALEEINKEMGLAFDEQDLDYYTRLFRDDIKRDPTNVELFDIAQSNSEHSRHWFFSGKLVIDGQPMPKTLFQMVKDTLK 243 (1307)
T ss_pred HHHHHHHHHhcCCcCCHHHHHHHHHHHhhhcCCCCcHHHHHHHHhhhhhccCcceeeeEEEEcCCcCCccHHHHHHHHHH
Confidence 99999999999999999999999999986699999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccC
Q psy5568 313 HSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVG 392 (685)
Q Consensus 313 ~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~G 392 (685)
..+++++|+|+|||++|+|+. ..+|+|++++.++.|+.++++|+++|||||||||||||||+|||||+||+|||+++||
T Consensus 244 ~~~~~~~~~~~Dns~~i~g~~-~~~~~~~~~~~~~~~~~~~e~~~i~fK~ETHNHPTaIePf~GAATGvGG~IRD~~a~G 322 (1307)
T PLN03206 244 ANPNNSVIGFKDNSSAIRGFV-VQPLRPVSPGSPSPLAPVDRDLDILLTAETHNFPCAVAPYPGAETGAGGRIRDTHATG 322 (1307)
T ss_pred HCCCCceEEeeehhhhhccce-eeEEeccCCCCCcceeEecCceEEEEEeccCCCCCccCCCCcccccCCceeecccccC
Confidence 889999999999999999987 8999999877888999999999999999999999999999999999999999999999
Q ss_pred CCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CC-----------CC------
Q psy5568 393 RGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EP-----------CS------ 453 (685)
Q Consensus 393 rGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~P-----------c~------ 453 (685)
|||||||+|++||||+|++|++.+|||+.++++|+++++|++||+++++|+|+|||+ +| |.
T Consensus 323 rGa~PiA~l~~~~~g~l~~~g~~~p~e~~~~~~p~~l~~~~~I~~~~~~G~s~YGN~~G~P~v~G~~~~F~~~~~~g~~~ 402 (1307)
T PLN03206 323 RGSFVVAGTAGYCVGNLRIEGSYAPWEDSSFVYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPNGERR 402 (1307)
T ss_pred CCceeeecceeEEecCCCCCCCcCccccccccCcccCCCHhHHhhccCCccccCCcccCCcccCcEEEEecccccccccc
Confidence 999999999999999999999999999889999999999999999999999999999 77 00
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 454 -------------------------------------------------------------------------------- 453 (685)
Q Consensus 454 -------------------------------------------------------------------------------- 453 (685)
T Consensus 403 ~~~kPim~ag~vG~~~~~~v~k~~~~~G~~vv~lGG~tgRdGigGat~SS~~~~~~s~~~d~~aVQ~GnP~~Ekklq~vi 482 (1307)
T PLN03206 403 EWLKPIMFSGGIGQIDHTHLTKGEPDIGMLVVKIGGPAYRIGMGGGAASSMVSGQNDAELDFNAVQRGDAEMSQKLYRVV 482 (1307)
T ss_pred ccCCCceEEEEEEEEcHHHcccCCCCCCCEEEEECCCcccccccchhhhhhhhCCccccccCCccccCCHHHHHHHHHHH
Confidence
Q ss_pred ----C---------------------------------------------------------------------------
Q psy5568 454 ----N--------------------------------------------------------------------------- 454 (685)
Q Consensus 454 ----~--------------------------------------------------------------------------- 454 (685)
+
T Consensus 483 ~ac~e~~~~~~I~~i~D~GAGGls~a~~Ela~~~G~~i~Ld~Vp~~e~gmsp~EI~~SESQERm~l~V~p~~~~~f~~i~ 562 (1307)
T PLN03206 483 RACVEMGEDNPIVSIHDQGAGGNCNVVKEIIYPKGAEIDIRAVVVGDHTLSVLEIWGAEYQEQDALLIKPESRDLLQSIC 562 (1307)
T ss_pred HHHHHhhcCCCEEEEEecCCchHHHhHHHHhhcCceEEEhhhCcCCCCCCCHHHHHHhHHhhhheeeECcccHHHHHHHH
Confidence 0
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 563 ~re~~~~~vVG~vT~~~rl~v~~~~~~~~~~~~g~~~~~~~~dlp~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (1307)
T PLN03206 563 DRERCSMAVIGTIDGSGRVVLVDSAAPEKCEANGLPPPPPAVDLDLEKVLGDMPQKTFEFKRVANKLEPLDIPPGITVMD 642 (1307)
T ss_pred HHcCCCeEEEEEEecCCeEEEEECCccccccccccccCceeEEEEhHHhcCCCCccccccccccccccccccCCCcCHHH
Confidence
Q ss_pred -------------------------------------------C-----------ceeEEecccCCceeecCHHHHHHHH
Q psy5568 455 -------------------------------------------D-----------RAIATSIGEQPIKGLVDPKRGARMA 480 (685)
Q Consensus 455 -------------------------------------------D-----------~G~A~s~G~~p~~~~~DP~~ga~~A 480 (685)
| +|+|||+|+||+++++|||+||++|
T Consensus 643 ~l~~vL~~pnVaSK~~l~~~~D~~V~g~vv~~~~vGp~q~p~aD~aV~~~~~~~~~g~a~s~G~~p~~~~~dp~~ga~~A 722 (1307)
T PLN03206 643 ALKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIPLADVAVIAQTHTGLTGGACAIGEQPIKGLVDPKAMARLA 722 (1307)
T ss_pred HHHHHhcCCccccccchhhhcccccCceEcccCccCCccCCCcceeEEEEeCCCCeEEEEEecCCCceeeeCHHHHHHHH
Confidence 1 6999999999999999999999999
Q ss_pred HHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeecccc--
Q psy5568 481 VAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELK-- 558 (685)
Q Consensus 481 V~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~-- 558 (685)
|+||+|||+++++..+.++.+|+||||++++|++.++|++||+||+|+|++| ||||+||||||||++.
T Consensus 723 V~Ea~~Nlvaa~~~~l~di~~s~nw~~~~~~p~~~~~l~~av~g~~~~~~~L----------gipii~GKdSls~~~~~~ 792 (1307)
T PLN03206 723 VGEALTNLVWAKVTALSDVKASGNWMYAAKLDGEGADMYDAAVALRDAMIEL----------GVAIDGGKDSLSMAAQAG 792 (1307)
T ss_pred HHHHHhHhhccCCCcHHHeEEEcChhHhhcCCCCHHHHHHHHHHHHHHHHHc----------CCCcccCeecCCCCCCCC
Confidence 9999999999988779999999999999999999999999999999999999 9999999999999863
Q ss_pred CCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHHHhhhhcCCCCCcCCHHHHHHH
Q psy5568 559 EKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDVEDAAALVRA 638 (685)
Q Consensus 559 ~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~~~~~~g~~~P~v~d~~~~k~~ 638 (685)
++.+++||||+||++|+|+|+++++||+||.+| | +.++|||||.++.+||||+|+|+++++++.+|+++|++.+|++
T Consensus 793 ~~~~~~P~TLvIs~~~~v~Dv~~~vtp~lK~~G-~--~vlL~idlG~~~~~LGGS~~~q~~~~~g~~~Pdv~d~~~lK~~ 869 (1307)
T PLN03206 793 GEVVKAPGNLVISAYVTCPDITKTVTPDLKLGD-D--GVLLHVDLGKGKRRLGGSALAQAYDQIGDDCPDLDDVAYLKKA 869 (1307)
T ss_pred CCCcCCCCCEEEEEEEEcCCcccCcChhhcCCC-C--EEEEEEecCCCCcCccccHHHHHhCccCCCCCCCCCHHHHHHH
Confidence 356899999999999999999999999999988 4 5667799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 639 FNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 639 ~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+++++|+++|+|+|+||+|+|||++||+||||++++|++|+
T Consensus 870 f~av~~Li~~glV~A~HDvSdGGL~~ALaEMAfag~~G~~Id 911 (1307)
T PLN03206 870 FEATQDLIAKRLISAGHDISDGGLVVTLLEMAFAGNCGINVD 911 (1307)
T ss_pred HHHHHHHHHCCCeeEEEeCCcCHHHHHHHHHHhhcCCcEEEE
Confidence 999999999999999999999999999999999999999997
No 2
>KOG1907|consensus
Probab=100.00 E-value=3.7e-140 Score=1171.00 Aligned_cols=562 Identities=49% Similarity=0.809 Sum_probs=510.5
Q ss_pred HHHHhcCCCCcceEEEEEEEEEecCCC---CCHHHHHHHHhhccccccccccCCCCccCC-CCcEEEEecCCCcCChhhh
Q psy5568 105 TKKLKAVPKVISDIESELCYNIEISRE---LTPVELDKLHWILNSSFECRKLSSHTNFKD-NSNVIEVGPRLNFSTPFCS 180 (685)
Q Consensus 105 l~~l~~~~~~V~~Vrte~vY~Vel~~~---Ls~ee~~~L~~LLs~~~~~~~~~~~s~l~~-~~~~ieV~PR~G~~spwss 180 (685)
++++.+......+++.++||++.+... .+..+...|.|+|++++.. .+..++.+.. ....+||+||+||+|||||
T Consensus 22 ~k~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~lnl~~~l~~~~~~-sl~~~s~l~~~~~~~ievgPR~~~~tpwst 100 (1320)
T KOG1907|consen 22 LKSFEEEFVRGVSVSVEYCYHVLTQEQLLYSSALDKLNLTWLLHSPLST-SLWKESQLHPEGTKNIEVGPRTGTITPWST 100 (1320)
T ss_pred HHHHHHHhhhhhehhhhhhhHHHHHHHHHhhhhhhHHHHHHHhcccccc-ccccchhcCCCCcceEEEeccCCccccccc
Confidence 677777666777889999998864331 1222223368999998765 3344555543 4567999999999999999
Q ss_pred hHHHHHHHcCcch-------------------------hhhhhcccccceeecC---cccccCCCCCCCCceE---eecc
Q psy5568 181 NVLSICQSIQLHS-------------------------CAESFYDRMTECVYSS---PLTSFNHGIKPDPWFY---VDVM 229 (685)
Q Consensus 181 ~a~~i~~~~gl~~-------------------------~~~~L~d~mte~~~~~---~~~~f~~~~~p~~~~~---v~l~ 229 (685)
||++|++.||++. +..+|||||||++|.. +...|++. +|++..+ ++..
T Consensus 101 na~nI~~~cG~~dV~RiErg~rylv~~~e~~~e~~~~~f~~~~~DRMTe~ly~~~p~~~~~Fd~~-~p~~~v~~~~~p~~ 179 (1320)
T KOG1907|consen 101 NATNIFEVCGYKDVERIERGIRYLVKFKEPLLENDVKEFLEILYDRMTEALYTNEPPTMVSFDDE-EPKPQVEVVFVPDK 179 (1320)
T ss_pred chhHHHHhcChHHHHHHhhceeEEEEecCccchHHHHHHHHHHHHHHHHHHhccCCCcccccccC-CCCccceeeeccch
Confidence 9999999999975 6779999999999876 35689988 6766444 4556
Q ss_pred CCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHhHHHHhhh
Q psy5568 230 GKGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMD 309 (685)
Q Consensus 230 ~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~ 309 (685)
..++++|+++|+|+||||++.||+||.+.|+++++|||||||||||||+||||||||||+|+|+|||+++++|||+|||+
T Consensus 180 ~~~k~~L~~aNqelGLAld~~dldyy~~~f~~~~kR~PTdVELFd~aQsnSEHsRHwfF~g~~~IDg~k~d~SL~kmIr~ 259 (1320)
T KOG1907|consen 180 QEGKQALEKANQELGLALDQLDLDYYYDLFVEEVKRNPTDVELFDFAQSNSEHSRHWFFRGDWTIDGRKQDKSLFKMIRN 259 (1320)
T ss_pred hhHHHHHHHHHHHhccccCcccHHHHHHHHHHHhcCCCCceeeeeeccccchhhhhheeccceEEecccCchHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeec
Q psy5568 310 TTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQ 389 (685)
Q Consensus 310 t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~ 389 (685)
|+.+++++++++|+|||++|+|++...+|.|. +..+++....++.+++||+|||||||||+||+||+||+||+|||++
T Consensus 260 T~~~n~~ntiiafsDNssa~~gf~~~~~~~P~--s~v~~~~~~~~~~~ll~~aETHN~PtAVsPfpGA~TGtGGrIRD~~ 337 (1320)
T KOG1907|consen 260 THDSNNDNTIIAFSDNSSAIRGFNSVTRFAPN--STVSPWIVIFEPSDLLFKAETHNHPTAVSPFPGATTGTGGRIRDEG 337 (1320)
T ss_pred HHhcCCCCceEEeccchHHhhccccceeeccc--cccccceeecCCcceEEEeeccCCCcccCCCCCCccCCCceeeccc
Confidence 99999999999999999999998756778985 5677888899999999999999999999999999999999999999
Q ss_pred ccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CCCCC-------------
Q psy5568 390 AVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EPCSN------------- 454 (685)
Q Consensus 390 ~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~Pc~~------------- 454 (685)
+||||+.+||||.|||||+|+||||.+|||+.+++||.++++|++||+++++|+|||||+ +||+.
T Consensus 338 atGrGs~~~agtaGysvg~LnipG~~qPwE~l~f~yP~~iA~pl~ImIEAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~ 417 (1320)
T KOG1907|consen 338 ATGRGSYEIAGTAGYSVGDLNIPGYKQPWEDLDFGYPYHIASPLDIMIEASNGASDYGNKFGEPVISGYARTFGMRVLLE 417 (1320)
T ss_pred cccccceeeecccccccccccCCCCCCCCcccccCCccccCCHHHHHhhCcCChhhhcccccchhhhhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999 88221
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 418 ~gerrey~KPIMfsgGiG~i~~~~~~K~~~apg~~likiGGp~yrIG~GGGAASSv~~G~g~aeLDFaaVQRGdaEM~~k 497 (1320)
T KOG1907|consen 418 NGERREYHKPIMFSGGIGTIRKQHARKEPIAPGQLLIKIGGPVYRIGVGGGAASSVVQGEGSAELDFAAVQRGDAEMERK 497 (1320)
T ss_pred CccccccccceEeecccCccCHHHhhcCCCCCCCEEEEecCceEEEecccchhhhhhcCCCccccchHHhhcCCHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 498 l~rVvrAC~~lge~NpI~sIHDqGAGGn~NvlkELV~~~~~Ga~~~~r~~~~gdpsmS~~EiW~aEyQE~~allv~a~~l 577 (1320)
T KOG1907|consen 498 LQRVVRACAELGENNPIQSIHDQGAGGNGNVLKELVEDNDLGATFDSRTFQLGDPSMSPMEIWCAEYQENYALLVKAEDL 577 (1320)
T ss_pred HHHHHHHHHHhcCCCceeEeeccCCCccccccHhhccccCCccEEEeeeeecCCCCCCHHHHhhhhhhhcceeeeCHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 578 ~~le~IckRERcp~svVG~vt~eqR~~l~d~~~~~~aidl~~~~llG~~pK~s~~l~~~~~~lk~l~lp~~~~l~dAl~R 657 (1320)
T KOG1907|consen 578 DILESICKRERCPVSVVGEVTGEQRVILLDKLAKETAIDLEMRQLLGKPPKMSRKLKRAPRVLKKLELPSGLTLRDALER 657 (1320)
T ss_pred HHHHHHHHhccCCeeEEEEEccCceEEEecCCCCCCccCCchHhhcCCCccccccccccccccccccCCCCChHHHHHHH
Confidence
Q ss_pred -------------------------------------------------C-ceeEEecccCCceeecCHHHHHHHHHHHH
Q psy5568 455 -------------------------------------------------D-RAIATSIGEQPIKGLVDPKRGARMAVAEA 484 (685)
Q Consensus 455 -------------------------------------------------D-~G~A~s~G~~p~~~~~DP~~ga~~AV~EA 484 (685)
| +|.|+|+|++|..+++||.++|||+|+||
T Consensus 658 VL~LpsV~SKrfLttkvDRsVtGLiaqqQ~VGPlqvplADvavt~~S~~~~tG~A~amGeqPik~Lida~a~ARm~VaE~ 737 (1320)
T KOG1907|consen 658 VLRLPSVASKRFLTTKVDRSVTGLIAQQQCVGPLQVPLADVAVTATSHFDTTGEAVAMGEQPIKALIDAAASARMCVAEA 737 (1320)
T ss_pred HhccccccccceeeeeccchhhheeehhhccCcccccceeeeEEEEEEeccccccccccccchHhhhCHHHHhHHHHHHH
Confidence 1 89999999999999999999999999999
Q ss_pred HhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeece--eeccccCCcc
Q psy5568 485 LTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGT--MKHELKEKAS 562 (685)
Q Consensus 485 l~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdS--m~~~~~~~~v 562 (685)
+.||+++.+..|.+|+||+|||||+++|+|.++||+||++++....+| ||.|.||||| |..+|+|+.|
T Consensus 738 l~NLv~a~i~sL~dvK~SgNWM~aak~~GEGarlydAv~aL~~~L~eL----------giAIdgGKDSlSMa~k~~ge~V 807 (1320)
T KOG1907|consen 738 LMNLVAAKITSLKDVKLSGNWMWAAKHPGEGARLYDAVQALCLGLCEL----------GIAIDGGKDSLSMAMKWDGEVV 807 (1320)
T ss_pred HHHhHhhcccchhheeeccceeecccCCCcchHHHHHHHHHHHHHHHh----------ceeecCCccchhhheeeCCeEE
Confidence 999999999999999999999999999999999999999999444499 9999999999 7778999889
Q ss_pred cCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHHHhhhhcCCCCCcCCHHHHHHHHHHH
Q psy5568 563 PNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDVEDAAALVRAFNVT 642 (685)
Q Consensus 563 ~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~~~~~~g~~~P~v~d~~~~k~~~~~v 642 (685)
+.|.||+||++++|+|+++++||++|.+..+.+..|+|||+..++.|||||+|+|+|+|+|+++|+++|...+|++|+.+
T Consensus 808 kaPgtLvIsayapc~dv~k~vtP~Lk~~~~gs~~~Ll~i~l~~~k~rLGgSaLaQvy~QiG~d~Pdl~~~~~lk~~f~~v 887 (1320)
T KOG1907|consen 808 KAPGTLVISAYAPCPDVTKTVTPDLKANVDGSKTSLLWIDLANSKMRLGGSALAQVYSQIGDDCPDLDNFDELKKFFSVV 887 (1320)
T ss_pred ecCceEEEEeeccCCCcceeecccccCCCCCCceEEEEEEccccccccchHHHHHHHHHhCCCCCCccchHHHHHHHHHH
Confidence 99999999999999999999999999754122456999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 643 QRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 643 ~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+|+++|+|+|+||+|||||++||+||||||++|++|+
T Consensus 888 qqL~~~~ii~AgHD~SDGGLlvt~lEMAfag~~gi~id 925 (1320)
T KOG1907|consen 888 QQLLNEGIILAGHDISDGGLLVTLLEMAFAGNVGIEID 925 (1320)
T ss_pred HHHHhcCceeecccccCCchhHHHHHHHhhcccceEEe
Confidence 99999999999999999999999999999999999986
No 3
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=1.4e-131 Score=1198.62 Aligned_cols=563 Identities=37% Similarity=0.590 Sum_probs=518.6
Q ss_pred EEEEccCCCCChHHH---HHHHhcCCCCcceEEEEEEEEEecCCCCCHHHHHHHHhhccccccccccCCCCccCCCCcEE
Q psy5568 90 IIRYYSKPGIGAGEK---TKKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNVI 166 (685)
Q Consensus 90 ml~l~G~~als~fr~---l~~l~~~~~~V~~Vrte~vY~Vel~~~Ls~ee~~~L~~LLs~~~~~~~~~~~s~l~~~~~~i 166 (685)
|++|||.+|||+||. +++|+++++.|.+|++++||+|+.+++|++++.++|.|||++++.++ . . ..+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~~~~~~v~~~~~l~~~~~~~l~~ll~~~~~~~----~-~---~~~~~ 72 (1290)
T PRK05297 1 MLILRGSPALSAFRLQKLLARLQAAVLPVTSIYAEYVHFADLSAPLSAEEQAKLERLLTYGPAEH----E-P---AGRLF 72 (1290)
T ss_pred CEEEcCCccCCHHHHHHHHHHHHhcCCCceEEEEEEEEEEecCCCCCHHHHHHHHHHhcCCcccc----C-C---cccEE
Confidence 689999999999999 78899988899999999999998878899999999999999985421 0 1 13679
Q ss_pred EEecCCCcCChhhhhHHHHHHHcCcch-----------------------hhhhhcccccceeecCc---ccccCCCCCC
Q psy5568 167 EVGPRLNFSTPFCSNVLSICQSIQLHS-----------------------CAESFYDRMTECVYSSP---LTSFNHGIKP 220 (685)
Q Consensus 167 eV~PR~G~~spwss~a~~i~~~~gl~~-----------------------~~~~L~d~mte~~~~~~---~~~f~~~~~p 220 (685)
+|+|||||+||||+||++|+++|||.. +.++|||||||+++.+. ..+| ...+|
T Consensus 73 ~v~pr~g~~~~~s~~a~~i~~~~g~~~~~rie~~~~~~~~~~~~~~~~~~i~~~l~n~m~e~~~~~~~~~~~~~-~~~~p 151 (1290)
T PRK05297 73 LVTPRPGTISPWSSKATDIAHNCGLAGIRRIERGIAYYVEAALSAEQRAALAALLHDRMTESVFADLDDAEALF-SHHEP 151 (1290)
T ss_pred EEEcCCCCCChhHHHHHHHHHHcCCccccEEEEEEEEEEccCCCHHHHHHHHHHhCCccceEEEcCcchhhhhh-ccCCC
Confidence 999999999999999999999999853 56799999999998763 2445 44479
Q ss_pred CCceEeeccCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccCh
Q psy5568 221 DPWFYVDVMGKGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESD 300 (685)
Q Consensus 221 ~~~~~v~l~~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~ 300 (685)
+++.+||++++++++|+++|+++|||||++||+||++||+ .|||||||+||+||+|+||||||||||||+|+|||++++
T Consensus 152 ~~~~~v~~~~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~-~l~R~Ptd~El~~~~q~wSEHCrhk~F~~~~~id~~~~~ 230 (1290)
T PRK05297 152 KPLTSVDVLGGGRAALEAANVELGLALAEDEIDYLVEAFT-KLGRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEEQP 230 (1290)
T ss_pred CCceEECCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhhhhcCCccCCCceeecCcccc
Confidence 9999999999999999999999999999999999999995 699999999999999999999999999999999999999
Q ss_pred HhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCcccc
Q psy5568 301 KCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTG 380 (685)
Q Consensus 301 ~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG 380 (685)
++||+|||+|++..+++++++|+|||++|++.. +.+|.|.. +...|..++++|+++||+||||||||||||+|||||
T Consensus 231 ~~l~~~i~~t~~~~~~~~~~~~~dna~vi~~~~-~~~~~~~~--~~~~~~~~~e~~~~~fK~ETHNhPsaiePf~GAaTG 307 (1290)
T PRK05297 231 KSLFKMIKNTHETNPDGVLSAYKDNAAVMEGSK-VGRFFPDP--DTGRYGYHQEPAHILMKVETHNHPTAISPFPGAATG 307 (1290)
T ss_pred hHHHHHHHHHHHhCCCcEEEEecCCcEEEEccc-cccccccc--ccccccccccceEEEEEeccCCCCCccCCCCccccc
Confidence 999999999998777899999999999999987 78888865 223788889999999999999999999999999999
Q ss_pred ccceeeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CC-------
Q psy5568 381 TGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EP------- 451 (685)
Q Consensus 381 ~GG~iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~P------- 451 (685)
+||+|||+++||||||||||+++||||+|++|++.+|||+ .+++|.+++||++|+++++.|+++|||+ +|
T Consensus 308 ~GG~iRD~~~~G~Ga~piag~~~~~~~~l~~~~~~~~~e~-~~~~P~~~~~p~~i~~~~~~Gis~~gn~~G~Pvv~G~Vs 386 (1290)
T PRK05297 308 SGGEIRDEGATGRGSKPKAGLTGFSVSNLRIPGFEQPWEE-DYGKPERIASALDIMIEGPLGGAAFNNEFGRPNLLGYFR 386 (1290)
T ss_pred CCceeccccccCCCCeeeecceeEEecCCCCCCCCCcccc-ccCCccccCCHhHhhhhccccHHHHhhhhCCCccceEEE
Confidence 9999999999999999999999999999999999999997 8899999999999999999999999888 66
Q ss_pred ----CC--------C-----------------------------------------------------------------
Q psy5568 452 ----CS--------N----------------------------------------------------------------- 454 (685)
Q Consensus 452 ----c~--------~----------------------------------------------------------------- 454 (685)
+. +
T Consensus 387 ~yne~~~~~~~~~~~~i~P~~~vg~vG~i~~~~~~~~~~~~Gd~IvllG~~~~rdglgGs~~ss~~~g~~~~~~~~~~Vq 466 (1290)
T PRK05297 387 TFEQKVNSHNEEVRGYHKPIMLAGGIGNIRADHVQKGEIPVGAKLIVLGGPAMRIGLGGGAASSMASGQSSEDLDFASVQ 466 (1290)
T ss_pred EEeccccCccccccccccceEEEEEEEEEehhhccccCCCCCCEEEEECCCCCCCCccHHHHHHHHhcccccccccCCCC
Confidence 10 0
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 467 ~~d~~~ek~~~~~i~~~~~~~~~~lI~s~hDvgaGGLa~AL~Ema~~~g~G~~idL~~vp~~~~~l~p~eil~SESQeRm 546 (1290)
T PRK05297 467 RGNPEMERRCQEVIDRCWQLGDDNPILSIHDVGAGGLSNAFPELVNDGGRGGRFDLRKIPNDEPGMSPLEIWCNESQERY 546 (1290)
T ss_pred cCCHHHHHHHHHHHHHHHHhcccCCeeEEecCCccHHHHHHHHHHHhcCceEEEEeCCCccccCCCCHHHHHhccccceE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 547 lv~V~~e~~e~~~~i~~~~~l~~~vIG~vt~~~~l~v~~~~~g~~~vdl~~~~L~~~~p~~~~~~~~~~~~~~~~~~~~~ 626 (1290)
T PRK05297 547 VLAIAPEDLELFEAICERERCPFAVVGEATEERHLTLEDSHFDNKPVDLPLDVLLGKPPKMHRDVKTVKAKGPALDYSGI 626 (1290)
T ss_pred EEEEcchhHHHHHHHHHhcCCCEEEEEEEeCCCeEEEEecCCCceEEEEEHHHhcCCCCceecCcccccccccccCCCCc
Confidence
Q ss_pred -----------------------------------------------C-----------ceeEEecccCCceeecCHHHH
Q psy5568 455 -----------------------------------------------D-----------RAIATSIGEQPIKGLVDPKRG 476 (685)
Q Consensus 455 -----------------------------------------------D-----------~G~A~s~G~~p~~~~~DP~~g 476 (685)
| +|+||++|+||+++.+|||+|
T Consensus 627 ~~~~~l~~vL~~pnV~SK~~l~~~~D~~V~g~tv~~p~vGp~q~p~~DaaV~~~~~~~~~g~ama~G~~P~~~~~dP~~g 706 (1290)
T PRK05297 627 DLAEAVERVLRLPTVASKSFLITIGDRSVTGLVARDQMVGPWQVPVADCAVTAASYDGYAGEAMAMGERTPVALLDAAAS 706 (1290)
T ss_pred CHHHHHHHHhcCCccccccchhhccCcccCCCEeecCCcCCCCCCCCCeEEEEecCCCCeEEEEEEcCCCCeeccCHHHH
Confidence 1 799999999999999999999
Q ss_pred HHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHH-HHhhhhhcCCCccccCCeeeeeeecee--
Q psy5568 477 ARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMS-WVLPARMGNTRREWIKPIMFSGGIGTM-- 553 (685)
Q Consensus 477 a~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~-d~c~~L~~~~~~~~~~gipivgGkdSm-- 553 (685)
|++||+||+|||+++|+.++.++.+|+|||||.+.|+++++|++++++|+ |+|++| ||||+||||||
T Consensus 707 a~~AV~EA~~Nlvaag~~~~~~i~ls~N~~~~~~~p~~~a~L~~av~a~~~e~c~~L----------gipiigGkdSmS~ 776 (1290)
T PRK05297 707 ARMAVGEALTNIAAAPIGDLKRIKLSANWMAAAGHPGEDARLYDAVKAVGMELCPAL----------GITIPVGKDSLSM 776 (1290)
T ss_pred HHHHHHHHHhhheecCCccccceEEEEEEeccCCCCchHHHHHHHHHHHHHHHHHHc----------CCCccccchhcCC
Confidence 99999999999999999889999999999999998999999999999999 999999 99999999997
Q ss_pred ecccc----CCcccCCcceEEEEEeeeCCCCcccCCCCc-CCCCCCcceEEEEEcCCCcCccchhHHHHHhhhhcCCCCC
Q psy5568 554 KHELK----EKASPNVGSLVISTYAPCPDIRQVVTPDIK-SPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPD 628 (685)
Q Consensus 554 ~~~~~----~~~v~ippTlvisa~g~v~d~~~~vtp~~k-~~G~d~~s~lv~i~lg~~~~~lGGS~la~~~~~~g~~~P~ 628 (685)
+++|+ ++.+++|||++|+|+|.++|+++++||+|| .+| +.|++|++++++.+||||+|+|+++++++.+|+
T Consensus 777 ~t~yne~~~~~~v~iPpTlvisa~g~v~dv~~~vTp~lkk~~g----~~l~lI~lg~~~~~lGGS~laq~~~~~g~~~P~ 852 (1290)
T PRK05297 777 KTKWQEGGEDKEVTSPLSLIISAFAPVEDVRKTLTPQLRTDKD----TALLLIDLGRGKNRLGGSALAQVYNQLGDKAPD 852 (1290)
T ss_pred ccccccCCCCCcceeCCccEEEEEEEecCcccccCcccccCCC----CEEEEEECCCCcccchHhHHHHHhhhhcCCCCC
Confidence 33342 245889999999999999999999999996 444 588899999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 629 VEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 629 v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
++|++.++++|+.+++|+++|+|+|+||+|+|||++||+||||++++|++|+
T Consensus 853 v~d~~~lk~~~~~v~~li~~glv~S~HDvSdGGL~~aLaEMAfa~~~G~~Id 904 (1290)
T PRK05297 853 VDDAEDLKGFFNAIQALVAEGLLLAYHDRSDGGLLTTLAEMAFAGHCGLDID 904 (1290)
T ss_pred CCCHHHHHHHHHHHHHHHHcCCEEEEEeCCcCHHHHHHHHHHhhCCCcEEEE
Confidence 7799999999999999999999999999999999999999999999999996
No 4
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=100.00 E-value=7.8e-129 Score=1171.27 Aligned_cols=566 Identities=42% Similarity=0.664 Sum_probs=512.8
Q ss_pred EccCCCCChHHH---HHHHhcCCCCcceEEEEEEEEEecCCCCCHHHHHHHHhhcc-ccccccccCCCCccCCCCcEEEE
Q psy5568 93 YYSKPGIGAGEK---TKKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILN-SSFECRKLSSHTNFKDNSNVIEV 168 (685)
Q Consensus 93 l~G~~als~fr~---l~~l~~~~~~V~~Vrte~vY~Vel~~~Ls~ee~~~L~~LLs-~~~~~~~~~~~s~l~~~~~~ieV 168 (685)
|+|.+|||+||. +++|+++++.|.+|++++||+|+++++|++++.+++..+|. ++..+.. ..++ ..+++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~v 76 (1310)
T TIGR01735 2 LRGPSALSGFRLEKLLQKLQTKVPELTGVYAEFCYFVGWESALTADEEEKLQLLLLAGSVLEPP---QSPL--GRGLLEV 76 (1310)
T ss_pred cCCcccCCHHHHHHHHHHHHhcCCCceEEEEEEEEEEEcCCCCCHHHHHHHHhhcccCCccccc---cCcC--CceEEEE
Confidence 679999999999 78899988899999999999999888899999999976444 3332210 1122 1258999
Q ss_pred ecCCCcCChhhhhHHHHHHHcCcch-------------------------hhhhhcccccceeecCccccc---CCCCCC
Q psy5568 169 GPRLNFSTPFCSNVLSICQSIQLHS-------------------------CAESFYDRMTECVYSSPLTSF---NHGIKP 220 (685)
Q Consensus 169 ~PR~G~~spwss~a~~i~~~~gl~~-------------------------~~~~L~d~mte~~~~~~~~~f---~~~~~p 220 (685)
+|||||+|||||||++|+++|||.. +.+.|||||||+++..|..+| ... +|
T Consensus 77 ~pr~g~~~p~ss~a~~i~~~~g~~~v~rie~~~~y~~~~~~~~~~~~~~~~~~~l~d~m~e~~~~~~~~~~~~~~~~-~~ 155 (1310)
T TIGR01735 77 GPRLGTISPWSSKATSIARNCGLAKVDRIERGRRYYLSGAHPLSEEQEAQAAALLHDRMTESVLPHEIEAFELFSVP-EP 155 (1310)
T ss_pred EcCCCcCChHHHHHHHHHHHcCCccccEEEEEEEEEEecCCCCCHHHHHHHHHHhCCCeEEEecCCchhhhhhccCC-CC
Confidence 9999999999999999999999863 456899999999998765554 443 56
Q ss_pred CCceEeeccCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccCh
Q psy5568 221 DPWFYVDVMGKGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESD 300 (685)
Q Consensus 221 ~~~~~v~l~~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~ 300 (685)
.++.+||++++++++|+++|+++|||||++||+||++||+ .|||||||+||+||||+||||||||||||+|+|||++++
T Consensus 156 ~~~~~v~~l~~~~~~L~~~~~~~gLaLs~~e~~~i~~~F~-~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~id~~~~~ 234 (1310)
T TIGR01735 156 LNLTTIDVLGGGRLALEKANQELGLALDEDEIDYLTKRFQ-ELQRNPSDVELMMFAQANSEHCRHKIFNADWIIDGKKQD 234 (1310)
T ss_pred CCcceeccccCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhhhhcCCccCCCceeecCcccc
Confidence 6788999999999999999999999999999999999995 699999999999999999999999999999999999999
Q ss_pred HhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccc-eeEEEeeCCCCCCccccCCCCccc
Q psy5568 301 KCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQD-LDIIFTAETHNFPTGVSPFSGATT 379 (685)
Q Consensus 301 ~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~k~ETHNhPsai~Pf~GAaT 379 (685)
++||+|||+|++.+++++|++|+||||||++.. ..+|.|... ...+|..+.++ |+|+||+|||||||+||||+||+|
T Consensus 235 ~slf~~i~~t~~~~~~~~~~~~~dNa~vi~~~~-~~~~~~~~~-~~~~~~~~~e~~~~i~~k~Ethnhpt~i~Py~GAat 312 (1310)
T TIGR01735 235 KSLFQMIKSTHEANPENTVSAYKDNSSVIEGHK-VGRLRPDPP-TRPEYRQHQEDLVHILMKVETHNHPTAIAPFPGAST 312 (1310)
T ss_pred hhHHHHHHhhhhcCCCceEEEecCcEEEEEccc-ccccccccc-cccccccccccceEEEEEeccCCCCCccCchhhHHH
Confidence 999999999999889999999999999999986 888998743 33345555555 999999999999999999999999
Q ss_pred cccceeeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CCCC----
Q psy5568 380 GTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EPCS---- 453 (685)
Q Consensus 380 G~GG~iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~Pc~---- 453 (685)
|+||+|||+++|||||+|+|+|++||||||++|++++|||+. +++|.++.+|++||+++++|+++|||+ +|++
T Consensus 313 gvgg~iRD~~a~GrGa~PiA~~d~l~fg~p~~~~~~~~~e~~-~~~P~~~~~p~~Il~e~~~G~~~~gn~~G~P~v~G~v 391 (1310)
T TIGR01735 313 GAGGEIRDEGATGRGAKPKAGLTGFCVSNLNIPGLEQPWEDP-FQKPERIASPLDIMIEAPLGAAAFNNEFGRPNLLGYF 391 (1310)
T ss_pred HHhHhHhChhhhCCCCeeeeeeeeeecCCCCCCCCCCccccc-cCCchhhccHHHHHHHHHHHHHHHhhhhCCcccceee
Confidence 999999999999999999999999999999999999999976 899999999999999999999999999 7600
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 454 -------------------------------------------------------------------------------- 453 (685)
Q Consensus 454 -------------------------------------------------------------------------------- 453 (685)
T Consensus 392 s~f~~~~~~~~g~~~~~~~P~~~~g~vG~i~~~~~~~~~~~~G~~ivllGg~~~rdglgGs~~ss~~~g~~~~~~~~~~V 471 (1310)
T TIGR01735 392 RTFELKASLPGGQVRGYHKPIMLAGGIGSIDAEHIQKGEIEPGALLIVLGGPAMLIGLGGGAASSMVSGTNTADLDFASV 471 (1310)
T ss_pred eeccccccccccccccccCCccEEEEEEEechhhcccCCCCCCCEEEEECCCCCCCCccHHHHHHHHhCCCcccccCCCC
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 454 -------------------------------------------------------------------------------- 453 (685)
Q Consensus 454 -------------------------------------------------------------------------------- 453 (685)
T Consensus 472 q~gdp~~ek~~~~~i~~~~~~~~~~~i~sihD~gaGGls~al~Ema~~~g~G~~i~L~~vp~~~~~m~~~eil~sESQeR 551 (1310)
T TIGR01735 472 QRGNPEMERRCQEVIDRCWQLGEKNPIISIHDVGAGGLSNALPELIHDGGRGAVIDLRAVPLDDPGLSPLEIWCNESQER 551 (1310)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCceEEEeccCccHHHHHHHHHHhcCCceEEEEcCCCcccCCCCCHHHHhhcccccc
Confidence
Q ss_pred ---------------------------------------------------------C----------------------
Q psy5568 454 ---------------------------------------------------------N---------------------- 454 (685)
Q Consensus 454 ---------------------------------------------------------~---------------------- 454 (685)
+
T Consensus 552 ~vl~v~~~~~~~f~~i~~~~~~~~~vIG~vt~~~~l~v~~~~~~~~~~~~~~~~~~~~~~vdl~~~~L~~~~P~~~~~~~ 631 (1310)
T TIGR01735 552 YVLLVRAENLEIFTAICERERCPFAVVGTATGDGRLTLVDDTPVRRNGQGDAPSHFPNNPVDLPLEVLLGKMPKMTRFVQ 631 (1310)
T ss_pred EEEEECcccHHHHHHHHHHcCCCEEEEEEECCCceEEEEecCcccccccccccccCCCeEEEeEHHHHcCCCCccccccc
Confidence 0
Q ss_pred --------------------------------------------------------------C-----------ceeEEe
Q psy5568 455 --------------------------------------------------------------D-----------RAIATS 461 (685)
Q Consensus 455 --------------------------------------------------------------D-----------~G~A~s 461 (685)
| +|+||+
T Consensus 632 ~~~~~~~~~~~~~~~~~~~~l~~vL~~pnVaSK~~l~~~~D~~V~g~tv~~~~vGp~q~p~aDaaV~~~~~~~~~G~ama 711 (1310)
T TIGR01735 632 RKAPMLQPLDIPPGLDLHEALERVLRLPAVASKRFLITIGDRSVGGLVARDQMVGPWQTPLADVAVTAASFDTYTGEAMA 711 (1310)
T ss_pred cccccccccccCCCcCHHHHHHHHhcCCccccccchhhhcccccCCcEeeccCcCCCCCCCcCeEEEEecCCCceEEEEE
Confidence 1 599999
Q ss_pred cccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCcccc
Q psy5568 462 IGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWI 541 (685)
Q Consensus 462 ~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~ 541 (685)
+|++|+++.+|||+||++||+||+|||+++|+.|+++|+||+||||+...|++.++|+++|++|.|+|++|
T Consensus 712 ~G~~P~~~~idP~~gA~~AV~EAl~NlaaaG~~~l~~i~~s~Nwm~~~~~pge~~~l~~av~al~eac~~L--------- 782 (1310)
T TIGR01735 712 IGERPPKALLDPKASARLAVGEAITNLAAALVGDLSDVKLSANWMAAAGHPGEDAALYDAVKAVSELCPAL--------- 782 (1310)
T ss_pred EcCCCCeeccCHHHHHHHHHHHHHhheeecCCcCHHHccccccchhhcCCCCCHHHHHHHHHHHHHHHHHc---------
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCeeeeeeeceeecccc----C--CcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 542 KPIMFSGGIGTMKHELK----E--KASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 542 ~gipivgGkdSm~~~~~----~--~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
||||+||||||||+.. | +.+.+|||++|+++|+++|+++++||+||++|+| +.||||++++++.+||||+|
T Consensus 783 -GipiigGKdSls~~~~~~~~G~~~~v~~PpTlvisA~g~v~Dv~k~vTp~lk~~ggd--~~Li~i~lg~~~~~LGGS~l 859 (1310)
T TIGR01735 783 -GIAIPVGKDSLSMKTRWQDNGETKSVTAPGSLVISAFAPVPDVRKTVTPDLKHDKGD--SHLLLVDLGPGKNRLGGSAL 859 (1310)
T ss_pred -CCCccccccccccccccccCCCcCccccCCCcEEEEEEEecCHhhccChhhccCCCC--ceEEEEEccCCcccchHHHH
Confidence 9999999999987653 2 3467799999999999999999999999998423 67899999999999999999
Q ss_pred HHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+|+|+++++.+|++++++.++++|+.+++|+++|+|+|+||+|+|||++||+||||++++|++|+
T Consensus 860 aq~~~~~g~~~P~vd~~~~lk~~f~~i~~li~~glV~A~HDvSdGGL~~aLaEMAfag~~G~~Id 924 (1310)
T TIGR01735 860 AQVFGQLGGDCPDLDDPERLKAFFAVMQGLVAEGLLLAYHDRSDGGLVTTLLEMAFAGHCGLDVD 924 (1310)
T ss_pred HHHhccccCCCCCCCcHHHHHHHHHHHHHHHHcCCeEEEeeCCcChHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999779999999999999999999999999999999999999999999999997
No 5
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=100.00 E-value=7.9e-101 Score=915.87 Aligned_cols=519 Identities=20% Similarity=0.225 Sum_probs=426.9
Q ss_pred cCCCCChHHH--HHHHhc-CCCC-cceEEEEEEEEEecCCCCCHHHHHHHHh-hccccccccccCCCCcc-CCCCcEEEE
Q psy5568 95 SKPGIGAGEK--TKKLKA-VPKV-ISDIESELCYNIEISRELTPVELDKLHW-ILNSSFECRKLSSHTNF-KDNSNVIEV 168 (685)
Q Consensus 95 G~~als~fr~--l~~l~~-~~~~-V~~Vrte~vY~Vel~~~Ls~ee~~~L~~-LLs~~~~~~~~~~~s~l-~~~~~~ieV 168 (685)
.++++..... +++|++ +++. |++||+..+|+|+ + +++++.+++.. +|++|+.+....+. ++ ..++++|+|
T Consensus 7 kk~~~d~~~~~l~~~~~~~l~~~~l~~vr~~~~y~i~--~-~~~~~~~~~~~~v~sep~~d~~~~~~-~~~~~~~~~~~v 82 (1239)
T TIGR01857 7 KKAGFDVESQSLVKELRHNLGLSSLKDLRIVNVYDVF--D-LAEELFAPTVKTIFSEPVTDHVLDEL-SVQADLAKFFAV 82 (1239)
T ss_pred ecccccHHHHHHHHHHHHHcCCCccceEEEEEEEEcc--C-CCHHHHHHHhcCcCCCCCcceEeccc-ccccCCceEEEE
Confidence 4566666555 888999 8886 9999999999998 4 99999999875 99999876533222 22 235689999
Q ss_pred ecCCCcCChhhhhHHHHHHHc-Ccch----------------------hhhhhcccccceeecC--cccccCCCCCCCCc
Q psy5568 169 GPRLNFSTPFCSNVLSICQSI-QLHS----------------------CAESFYDRMTECVYSS--PLTSFNHGIKPDPW 223 (685)
Q Consensus 169 ~PR~G~~spwss~a~~i~~~~-gl~~----------------------~~~~L~d~mte~~~~~--~~~~f~~~~~p~~~ 223 (685)
+++||++|+.+.+|.++++.+ +-.. ++..|.|+..+++... |..+......|.++
T Consensus 83 ~~lPG~~D~ra~sa~q~i~~l~~~~~~~v~t~~~y~~~g~~~~~~~~~i~~~~iN~v~~r~~~~~~~~~~~~~~~~~~~v 162 (1239)
T TIGR01857 83 EFLPGQFDQRADSAQECILLLSESEDVTVNTAKLYILNGDLDDEELNKIKNYYINPVDSREKDLTTGKALEEFSESPKEV 162 (1239)
T ss_pred EeCCCCcCcHHHHHHHHHHHhcCCCCceEEEEEEEEEecCCCHHHHHHHHHHcCChHHheeecccCccchhhhccCCCCc
Confidence 999999999999999999875 2111 5566669999887432 33332222246788
Q ss_pred eEeec-cCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHh
Q psy5568 224 FYVDV-MGKGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKC 302 (685)
Q Consensus 224 ~~v~l-~~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~s 302 (685)
.+|+. +++++++|+++|+++|||||++||+|||+||+ .|+|||||+||+||||+||||||||||||+| |++..+.+
T Consensus 163 ~~~~~f~~~~~~~L~~~~~e~gLAl~~~di~~i~~yF~-~~~R~PTd~El~~laq~wSeHCRH~~F~~~i--~~~~~~~~ 239 (1239)
T TIGR01857 163 ETLTGFESYDAEDLAKFKAEQGLAMSLEDLKFIQDYFK-SIGRNPTETEIKVLDTYWSDHCRHTTFETEL--KHVTFSDS 239 (1239)
T ss_pred eeecccccCCHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hcCCCCChhheeeccccchhhhcCcccccee--cceecccc
Confidence 99985 58999999999999999999999999999996 5999999999999999999999999999996 44444444
Q ss_pred HH-HHhhhhccc---------------------------cCCCceeecccccceeeccccCCccccCCCCCCCCceeccc
Q psy5568 303 LF-EMIMDTTKH---------------------------SNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQ 354 (685)
Q Consensus 303 L~-~~i~~t~~~---------------------------~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (685)
+| +||++|++. .++.....+.|||..|++|+ +.... .|..++|
T Consensus 240 ~~~~~i~~~~~~y~~~r~~~~~~~~~~~l~d~ati~~k~~~~~~~~~~~d~s~~ina~~-~~v~v--------~~~~~~e 310 (1239)
T TIGR01857 240 KFQKQLKKAYEDYLAMREELGRSEKPVTLMDMATIFAKYLRKNGKLDDLEVSEEINACS-VEIEV--------DVDGVKE 310 (1239)
T ss_pred hhHHHHHHHHHHHHhhhhhcCCcCcchhHHHHHHHHHHHhhccccccccchhhhhccCc-eEEEE--------EEEEEec
Confidence 55 344443332 12223456667777777664 21111 2678899
Q ss_pred ceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHH
Q psy5568 355 DLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLN 434 (685)
Q Consensus 355 ~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~ 434 (685)
+|+++||+||||||||||||+|||||+||+|||+++ || +|+|++||+|++.+||++.+.++|+++ +|++
T Consensus 311 ~~~v~fK~ETHNHPSaIePf~GAATGvGG~IRD~ls-g~---------a~~~~~Lr~~g~g~p~~~~~~~~~gkl-p~r~ 379 (1239)
T TIGR01857 311 PWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLS-GR---------SYVYQAMRVTGAGDPTVPISETLKGKL-PQRK 379 (1239)
T ss_pred ceEEEEEEccCCCCCccCCCCcccccCCchhccccc-cc---------eeeecccccCCCCCCCccccccccCCC-chhh
Confidence 999999999999999999999999999999999998 55 689999999999999998777888774 8999
Q ss_pred HHHHhcccccCCCCC--CCCC-----------------------------------------------------------
Q psy5568 435 ILIEASNGASDYGNI--EPCS----------------------------------------------------------- 453 (685)
Q Consensus 435 i~~~~~~G~s~YgN~--~Pc~----------------------------------------------------------- 453 (685)
|+.++++|+|+|||+ +|+.
T Consensus 380 I~~gv~~G~s~YGN~~GvpTg~g~~~f~~~Y~~~~lv~~~~vG~~~~~~v~k~~~~~Gd~iv~~Gg~tGRdGigGat~SS 459 (1239)
T TIGR01857 380 ITTTAAHGYSSYGNQIGLATGQVSEIYHPGYVAKRMEVGAVVAATPKENVVREKPEPGDVIILLGGKTGRDGIGGATGSS 459 (1239)
T ss_pred hhhhcccceeccCcccCCceeeEEEEEecCCCCCceEEEEEEEeecHHHhccCCCCCCCEEEEECCCCCcCcccchhhhh
Confidence 999999999999999 7700
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 454 -------------------------------------------------------------------------------- 453 (685)
Q Consensus 454 -------------------------------------------------------------------------------- 453 (685)
T Consensus 460 ~~~~~~s~~~~~~aVQ~Gdp~~Ekkl~e~i~~a~~~glI~s~hD~gaGGLavAlaEma~G~~IdL~~vp~~~~gl~p~Ei 539 (1239)
T TIGR01857 460 KEHTVESLELCGAEVQKGNAPEERKIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELADGLEIDLNKVPKKYEGLNGTEL 539 (1239)
T ss_pred hhccccccccccCccCcCCHHHHHHHHHHHHHHHhCCCEEEEeecchhHHHHHHHHHhCCEEEEcCCCccccCCCCHHHH
Confidence
Q ss_pred ---C----------------------------------------------------------------------------
Q psy5568 454 ---N---------------------------------------------------------------------------- 454 (685)
Q Consensus 454 ---~---------------------------------------------------------------------------- 454 (685)
|
T Consensus 540 LfSESQeRmlv~V~pe~~e~f~~i~~~~~l~~~vIG~vt~~~~l~v~~~g~~v~dL~~~fL~~~gp~~~~~~~~~~~~~~ 619 (1239)
T TIGR01857 540 AISESQERMAVVVSPEDVDAFLAYCNEENLEATVVATVTEKPRLVMNWNGKTIVDLSRRFLDTNGVRQVIDAKVVDKDVK 619 (1239)
T ss_pred hhCCcCCeEEEEEChhhHHHHHHHHHHCCCCEEEEEEECCCCeEEEEeCCceEEEeeHHHHcCCCCCCeeeccccccccc
Confidence 0
Q ss_pred ----------------------------------------------------------C--------------ceeEEec
Q psy5568 455 ----------------------------------------------------------D--------------RAIATSI 462 (685)
Q Consensus 455 ----------------------------------------------------------D--------------~G~A~s~ 462 (685)
| +|+|||+
T Consensus 620 ~~~~~~~~~~~~~~~~l~~vL~~pnVaSK~~l~~qyD~~V~g~TV~~P~gG~~q~~~~DaaV~~~~~~~g~t~~g~ams~ 699 (1239)
T TIGR01857 620 LPEERQKTSAETLEEDWLKVLSDLNVASQKGLQERFDSSVGAGTVLMPLGGKYQLTPTEASVAKLPVLGGETHTASAIAW 699 (1239)
T ss_pred cccccCCCCCcCHHHHHHHHhcCCcccchhhhhhhcCcccCCCeeeCCCCCCcCCCCcceEEEEeeccCCCCCeEEEEEe
Confidence 1 5899999
Q ss_pred ccCCceeecCHHHHHHHHHHHHHhhhhccCCcccccccccccccc-----CCCCCchHHHHHHHHHHHHHHhhhhhcCCC
Q psy5568 463 GEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMW-----AAKLPGEGAALFDACQAMSWVLPARMGNTR 537 (685)
Q Consensus 463 G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~-----p~~~p~~~~~L~~av~g~~d~c~~L~~~~~ 537 (685)
|+||+++.+|||+||++||+||+|||+|+|++|.+ +. +||.. |++ |+..+++.+++.++.++|++|
T Consensus 700 g~nP~~~~~dPy~ga~~AV~EA~rNlva~G~~~~~-i~--Lnf~~~F~k~p~~-p~~w~~~~~al~ga~~a~~~l----- 770 (1239)
T TIGR01857 700 GFNPYIAEWSPYHGAAYAVIESLAKLVAAGADYKK-AR--LSFQEYFEKLDKD-AERWGKPFAALLGAIKAQIDL----- 770 (1239)
T ss_pred cCCCceeccCHHHHHHHHHHHHHhhhheeCCcHHH-EE--EecccccccCCCC-hhHHhHHHHHHHHHHHHHHHh-----
Confidence 99999999999999999999999999999999754 54 57766 544 667788999999999999999
Q ss_pred ccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHH
Q psy5568 538 REWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQ 617 (685)
Q Consensus 538 ~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~ 617 (685)
|+||+||||||||+|++ +++||||+++++| |.|+++++||+||.+| + .|++| +.+..+
T Consensus 771 -----gipvigGKdSmsn~~~~--v~iPPTlvi~avg-v~Dv~~~vt~~~K~~G-~---~i~li--g~~~~~-------- 828 (1239)
T TIGR01857 771 -----GLPAIGGKDSMSGTFEE--LTVPPTLISFAVT-TANSRRVISPEFKAAG-E---NIYLI--PGQALE-------- 828 (1239)
T ss_pred -----CCCCCcceecCccccCC--eeeCCccEEEEEe-ccCHhhccChhhccCC-C---EEEEE--cCCccc--------
Confidence 99999999999999864 8999999999998 5599999999999988 3 67776 433222
Q ss_pred HhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 618 VLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 618 ~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.+ .| |++.++++|+++++|+++|+|+|+||+|+|||++||+||||++++|++|+
T Consensus 829 -----~g-~~---d~~~~k~~~~~v~~li~~g~v~s~hDvS~GGL~vaLaEMaf~g~~G~~i~ 882 (1239)
T TIGR01857 829 -----DG-TI---DFDLLKENFAQIEELIADHKVVSASAVKYGGVAESLAKMTFGNRIGAELN 882 (1239)
T ss_pred -----CC-CC---CHHHHHHHHHHHHHHHHCCCEEEEEeCCcChHHHHHHHHHhcCCceEEEe
Confidence 11 23 67999999999999999999999999999999999999999999999996
No 6
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-97 Score=843.16 Aligned_cols=377 Identities=33% Similarity=0.445 Sum_probs=347.6
Q ss_pred EeeccCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHhHH
Q psy5568 225 YVDVMGKGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLF 304 (685)
Q Consensus 225 ~v~l~~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~ 304 (685)
.+++++.++++|++.+.++||+|+++||+||++ | .+||+||++||+||+|+||||||||+ +++||
T Consensus 2 ~~~~~~~~~~~l~~~~~~~gl~L~~dE~~~i~~-~--~~GR~P~~~El~mf~~~WSEHC~yKs------------sk~~l 66 (743)
T COG0046 2 MVDFLSGSREALEKANTELGLALSDDEYDYIRE-F--LLGREPTDTELGMFAQMWSEHCSYKS------------SKSLL 66 (743)
T ss_pred cccccccchhhhhccchHhhcCCCHHHHHHHHH-H--hcCCCCcHHHHHHHHHHHhhhcCccc------------hHHHH
Confidence 468888999999999999999999999999999 8 67899999999999999999999994 58999
Q ss_pred HHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccce
Q psy5568 305 EMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGR 384 (685)
Q Consensus 305 ~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~ 384 (685)
+||+.|+ .++++|++|+||||+++.. +.|+++|||||||||||||||+|||||+||+
T Consensus 67 k~~~~t~--~~~~vi~g~gdnAgvvdi~---------------------d~~~v~fKvESHNHPSaIePy~GAATGvGGi 123 (743)
T COG0046 67 KMFPTTH--TGEYVLSGPGDNAGVVDIG---------------------DGWAVVFKVESHNHPSAIEPYQGAATGVGGI 123 (743)
T ss_pred hhCCCCC--CCCeEEEcccCCcceEEeC---------------------CcEEEEEEeccCCCCCccCCCCCcccccCce
Confidence 9999876 6799999999999999964 3599999999999999999999999999999
Q ss_pred eeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CC-----------
Q psy5568 385 IRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EP----------- 451 (685)
Q Consensus 385 iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~P----------- 451 (685)
|||+++| ||||||++++|.||.++.| ++++||.+++.|+++|||+ +|
T Consensus 124 IRDv~sm--GArPiA~l~~l~fG~~~~~------------------~~~~i~~gvv~Gia~YGN~iGvPtv~Ge~~fd~~ 183 (743)
T COG0046 124 IRDVLSM--GARPIALLDSLRFGIPDIE------------------KTRYIMKGVVAGIAAYGNEIGVPTVGGEFRFDES 183 (743)
T ss_pred eeccccc--CceeeeeecccccCCCCCc------------------hhhhHHhccccchhhcCccccccccceEEEEccc
Confidence 9999999 7999999999999954432 3699999999999999999 88
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 452 -------------------------------------------------------------------------------- 451 (685)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (685)
T Consensus 184 y~~npLvna~~vG~i~~~~i~~~~a~~~G~~li~~Gg~TgrDGigGat~aS~~~~~~~~e~dr~aVQvGdPf~Ek~l~ea 263 (743)
T COG0046 184 YVGNPLVNAGCVGLIRKEHIVKGEAIGPGDKLILLGGKTGRDGIGGATFASMELGEESEEEDRPSVQVGDPFMEKRLQEA 263 (743)
T ss_pred cCCCceEEEEEeeecchhheeeccCCCCCCEEEEEcCCccccccCchhhhhhhhCcchhhhcCCccccCChHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------CCC---------------------
Q psy5568 452 --------------------------------------------------------CSN--------------------- 454 (685)
Q Consensus 452 --------------------------------------------------------c~~--------------------- 454 (685)
|+|
T Consensus 264 ~le~~~~~~I~~i~DlGAgGLs~A~~Ela~~gg~G~~i~Ld~VP~rE~gMsp~Ei~~SESQERMllvv~p~~~e~~~~i~ 343 (743)
T COG0046 264 ILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEIDLDKVPLREPGMSPYEIWLSESQERMLLVVAPEDVEEFLEIC 343 (743)
T ss_pred HHHHHhcCCeEEEeccCCchhhhhHHHHHhccCCeEEEEhhcCcccCCCCCHHHHHHhccchheEEEEccccHHHHHHHH
Confidence 111
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 344 ~k~~l~~aVVG~vT~~~~~~~~~~ge~v~dlP~~~L~~~aP~~~r~~~~~~~~~~~~~~~~~~~~l~~a~~~vL~~p~va 423 (743)
T COG0046 344 EKERLPAAVVGEVTDEPRLVVDWKGEPVVDLPIDVLAGKAPKYDRPVKEPKKEEAGDVPEPEEPDLEEALLKVLSSPNVA 423 (743)
T ss_pred HHcCCCeEEEEEEecCceEEEEECCCEEEeccHHHHcCCCCeeeccccccccccccccCCCCcccHHHHHHHHhcCcchh
Confidence
Q ss_pred -------------------------C-------------ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccc
Q psy5568 455 -------------------------D-------------RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDL 496 (685)
Q Consensus 455 -------------------------D-------------~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl 496 (685)
| +|+||++|+||+++++|||+||++||+||+|||+|+|++|+
T Consensus 424 sk~~l~~qyD~~V~~~Tv~~pG~~~DaaV~r~~~~~~~~~g~A~t~~~np~~~~ldpy~Ga~~aVaEa~rNl~a~Ga~pl 503 (743)
T COG0046 424 SKEWLYEQYDRSVGGNTVVDPGPVADAAVLRISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATGAKPL 503 (743)
T ss_pred hhcceeeecceeeccceeecCCCCcceEEEEecccCCCcceEEEEcCCCCcceEEChhHHHHHHHHHHHHHHHhhCCcch
Confidence 1 26999999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeee
Q psy5568 497 KDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPC 576 (685)
Q Consensus 497 ~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v 576 (685)
+.++| +||++|++ |+.++|+.++++++.|+|++| |+||+||||||||++.+. +|||||+|+++|+|
T Consensus 504 a~~d~-lnfg~pe~-pE~~~q~~~a~~g~~eac~~l----------~~pvv~GnvSlynet~~~--~i~PTpvi~~vg~v 569 (743)
T COG0046 504 ALTDN-LNFGNPEK-PEVMGQFVAAVAGLAEACRAL----------GIPVVGGNVSLYNETNGQ--PIPPTPVIGAVGLV 569 (743)
T ss_pred hhhhh-hccCCCCC-hhhhhHHHHHHHHHHHHHHHh----------CCCcccceeeeeeccCCc--ccCCcceEEEEEEe
Confidence 99999 89999988 788999999999999999999 999999999999999764 88999999999999
Q ss_pred CCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHHHh-hhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEE
Q psy5568 577 PDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVL-AEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGH 655 (685)
Q Consensus 577 ~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~~~-~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~H 655 (685)
+|+++++||.||+.| + .|++ +|.++++||||+|+|++ +...+.+|.+ |++.+|++++++++++++|+|+|+|
T Consensus 570 ~dv~k~~~~~~~~~g-~---~i~l--lG~~~~~lggS~~~~~~~~~~~g~~p~~-dl~~ek~~~~~i~~~i~~~~v~aah 642 (743)
T COG0046 570 EDVRKVLTPELKKAG-L---LLYL--LGETKDELGGSELAQVYHGLGDGPPPVV-DLAEEKKFFDAIRALIADGKVLAAH 642 (743)
T ss_pred echhhhcCccccCCC-c---EEEE--eCCCccccchhHHHHHHhcccCCCCCCC-CHHHHHHHHHHHHHHHhcCceEEEE
Confidence 999999999999888 3 3444 69999999999999975 5566667777 9999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 656 DISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 656 DvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+|+|||++||+||||++++|++|+
T Consensus 643 D~s~GGL~~aLaemaf~~~~G~~i~ 667 (743)
T COG0046 643 DVSDGGLAVALAEMAFAGGIGLEID 667 (743)
T ss_pred EcccccHHHHHHHHHhccCCceEEE
Confidence 9999999999999999999999997
No 7
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=1.3e-67 Score=616.83 Aligned_cols=359 Identities=26% Similarity=0.348 Sum_probs=310.4
Q ss_pred HHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHhHHHHhhhhccccCCC
Q psy5568 238 EVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQN 317 (685)
Q Consensus 238 ~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~~~~~~ 317 (685)
++.+++ +|+++||++|++ .|||+|||+||+||+|+|||||+|| +++++|+.+ ++.+++
T Consensus 6 ~~~~~~--~l~~~e~~~i~~----~l~r~p~~~el~~~~~~wsehc~~k------------~s~~~l~~~----~~~~~~ 63 (724)
T PRK01213 6 ELYAEM--GLTDDEYERIRE----ILGREPNFTELGMFSVMWSEHCSYK------------SSKPLLRKF----PTKGPR 63 (724)
T ss_pred HHHHHc--CCCHHHHHHHHH----HhCCCCCHHHHHHHHHHhhccccCC------------CCHHHHhcC----CCCCCc
Confidence 444454 568999999985 5899999999999999999999999 688999855 336689
Q ss_pred ceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCee
Q psy5568 318 NVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNC 397 (685)
Q Consensus 318 ~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~p 397 (685)
++++++|||+||+.. ++++++||+|||||||+++||.||+||+||.|||+.+| ||+|
T Consensus 64 v~~g~gdDaavi~~~---------------------~~~~lv~~~Esh~~p~~~~P~~ga~~~v~~~i~Di~am--Ga~P 120 (724)
T PRK01213 64 VLQGPGENAGVVDIG---------------------DGQAVVFKIESHNHPSAVEPYQGAATGVGGILRDIFSM--GARP 120 (724)
T ss_pred EEEeeCCCceEEEcC---------------------CCcEEEEEeccCCCCCccCCccchhhcccceecccccc--Ccee
Confidence 999999999999953 36899999999999999999999999999999999998 9999
Q ss_pred eecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CC------------------------
Q psy5568 398 IAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EP------------------------ 451 (685)
Q Consensus 398 ia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~P------------------------ 451 (685)
+|.+++|+|++++.| .+++++.++..|+++|+|+ +|
T Consensus 121 ~a~~~~l~~~~~~~~------------------~~~~~l~~~~~Gi~~~~n~~Gvp~vgG~t~~~~~~~~~p~v~~~~iG 182 (724)
T PRK01213 121 IALLDSLRFGELDHP------------------KTRYLLEGVVAGIGGYGNCIGVPTVGGEVYFDESYNGNPLVNAMCVG 182 (724)
T ss_pred eeeeeEEEccCCCCC------------------cHHHHHHHHHHHHHHHHHhcCCCEeeEEEEEeCCcCCCceEEEEEEE
Confidence 999999999976321 2344444555555554444 33
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 452 -------------------------------------------------------------------------------- 451 (685)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (685)
T Consensus 183 ~~~~~~~~r~~~~~~Gd~Ii~~G~~tg~~Gigg~~~~s~~~~~~~~~~~~~vq~g~~~~~~~l~~~~~~~~~~~~v~a~~ 262 (724)
T PRK01213 183 LVRHDDIVLAKASGVGNPVVYVGAKTGRDGIGGASFASAELSEESEEKRPAVQVGDPFMEKLLIEACLELIKTGLVVGIQ 262 (724)
T ss_pred EEcHHHcccCCCCCCCCEEEEeCCCcCcccCcHHHHHHhhhhccccccCcccccCCcHHHHHHHHHHHHHhccCCEEEEE
Confidence
Q ss_pred ------------------------------------------CCC-----------------------------------
Q psy5568 452 ------------------------------------------CSN----------------------------------- 454 (685)
Q Consensus 452 ------------------------------------------c~~----------------------------------- 454 (685)
+.+
T Consensus 263 D~g~gGL~~al~Ema~~s~~G~~I~ld~iP~~~~~~~p~ei~~sesqerml~~v~~~~~~~~~~~~~~~~~~~~vIG~vt 342 (724)
T PRK01213 263 DMGAAGLTCSSSEMAAKGGLGIELDLDKVPLREEGMTPYEIMLSESQERMLLVVKPGKEEEVLAIFEKWDLDAAVIGEVT 342 (724)
T ss_pred ECCCCcHHHhHHHHhccCCcEEEEEcccccccCCCCCHHHHHhccccceEEEEECHHHHHHHHHHHHHcCCCEEEEEEEe
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 343 ~~~~~~~~~~g~~v~d~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~v~sk~~i~~~yD~~V~~~t 422 (724)
T PRK01213 343 DDGRLRVYHHGEVVADVPAEALADEAPVYDRPYKEPAYLDELQADPEDLKEALLKLLSSPNIASKEWVYEQYDHEVQTNT 422 (724)
T ss_pred cCCeEEEEECCeEEEEeEHHHhcCCCCceeccccCcccccccccCCcCHHHHHHHHhcCCcccchhhhhhccCceecCCc
Confidence
Q ss_pred ------C----------ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHH
Q psy5568 455 ------D----------RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAAL 518 (685)
Q Consensus 455 ------D----------~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L 518 (685)
| +++++++|.+|+++..|||.+|++||+|+++||+++|++|+..+++ +||++|++ |+..++|
T Consensus 423 v~~pGdDaAVi~~~~~~~~l~~s~D~~~~~~~~~P~~~g~~AV~~avsdiaa~Ga~P~~~~~~-l~~~~p~~-~~~~~~l 500 (724)
T PRK01213 423 VVKPGGDAAVLRIRGGGKGLALTTDCNPRYVYLDPYEGAKLAVAEAARNLAAVGATPLAITDC-LNFGNPEK-PEVMWQF 500 (724)
T ss_pred cccCCCCeEEEEecCCCEEEEEEecCCCCccccCHHHHHHHHHHHHHHHHhccCCeehhheee-eecCCCCc-hHHHHHH
Confidence 1 4689999999999999999999999999999999999999998887 79998865 6667889
Q ss_pred HHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceE
Q psy5568 519 FDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSL 598 (685)
Q Consensus 519 ~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~l 598 (685)
.++++||.++|++| |+|++|||+||||++.+ .+++||++|+++|.++|.++.+++.+|++| | .|
T Consensus 501 ~~~~~Gi~~a~~~~----------gvpivGG~~s~~n~~~~--~~i~pt~~vt~vG~~~~~~~~~~~~~k~~G-D---~I 564 (724)
T PRK01213 501 VEAVRGLADACRAL----------GTPVVGGNVSLYNETGG--TAIYPTPVIGMVGLIDDVSKRTTSGFKKEG-D---LI 564 (724)
T ss_pred HHHHHHHHHHHHHh----------CCCcccceeeeeCCCCC--cccCCcceEEEEEEecCHhhCcChhcCCCC-C---EE
Confidence 99999999999999 99999999999998753 468999999999999998899999999999 5 45
Q ss_pred EEEEcCCCcCccchhHHHHHh-hhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCe
Q psy5568 599 LWIDLSCGQHRVGGSALSQVL-AEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPK 677 (685)
Q Consensus 599 v~i~lg~~~~~lGGS~la~~~-~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~ 677 (685)
+++ |....++|||.|++.+ ++..+..|++ +++.++++++.+++++++|+|.|+||+|+|||+++|+|||+++++|+
T Consensus 565 ~l~--g~~~~~~ggs~~~~~~~~~~~~~~p~~-~~~~~~~~~~~l~~l~~~g~v~a~~DvSdGGL~~aL~ema~as~~G~ 641 (724)
T PRK01213 565 YLL--GETKDELGGSEYLKVIHGHVGGRPPKV-DLEAEKRLQELVREAIREGLVTSAHDVSEGGLAVALAEMAIAGGLGA 641 (724)
T ss_pred EEE--cCCCCCccHHHHHHHhcCCcCCCCCCC-CHHHHHHHHHHHHHHHHCCCeEEEEeCCcCcHHHHHHHHHhcCCceE
Confidence 554 7777899999999875 7777788988 89999999999999999999999999999999999999999999999
Q ss_pred EEE
Q psy5568 678 GWV 680 (685)
Q Consensus 678 ~I~ 680 (685)
+|+
T Consensus 642 ~I~ 644 (724)
T PRK01213 642 EVD 644 (724)
T ss_pred EEE
Confidence 995
No 8
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=9.1e-60 Score=550.53 Aligned_cols=352 Identities=26% Similarity=0.351 Sum_probs=297.9
Q ss_pred CChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHhHHHHhhhhccccCCCceeeccccc
Q psy5568 247 FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNS 326 (685)
Q Consensus 247 l~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~~~~~~~v~~~~dna 326 (685)
|+++||++|+ +.|||+|||+||+||+|+|||||+|| ++++|++.+ .+++++++++++|||
T Consensus 1 l~~~e~~~i~----~~l~r~p~~~e~~~~~~~wsehc~~k------------~~~~~~~~~----~~~~~~v~~g~gDDa 60 (715)
T TIGR01736 1 LSDEEMELIR----EILGREPNDTELAMFSAMWSEHCSYK------------SSKKLLKQF----PTKGPNVIQGPGEDA 60 (715)
T ss_pred CCHHHHHHHH----HHhCCCCCHHHHHHHHHHHhhhcCCc------------CcHHHHhhC----CCCCCcEEEeeCCce
Confidence 6899999998 58999999999999999999999999 457788754 335689999999999
Q ss_pred ceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEe
Q psy5568 327 SAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCV 406 (685)
Q Consensus 327 ~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~ 406 (685)
+||+.. +++.++||+||||||++++||.||+|+++|.+||+.+| ||+|++.++++++
T Consensus 61 avi~~~---------------------~~~~lv~~~e~h~~p~~~~P~~~a~~~v~~~vsDi~am--Ga~P~~~~~~l~~ 117 (715)
T TIGR01736 61 GVVDIG---------------------DGYAVVFKMESHNHPSAIEPYNGAATGVGGILRDILSM--GARPIALLDSLRF 117 (715)
T ss_pred EEEEeC---------------------CCeEEEEEeccCCCCCCcCCCCchhhcccceecccccC--CCeEeeEEEEecc
Confidence 999953 36789999999999999999999999999999999998 9999999999999
Q ss_pred ccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CC---------------------------------
Q psy5568 407 GNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EP--------------------------------- 451 (685)
Q Consensus 407 g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~P--------------------------------- 451 (685)
+++..+. +.+++.+...|+++|+|+ +|
T Consensus 118 ~~~~~~~------------------~~~~l~~~~~Gi~~~~~~~Gv~ivGG~t~~~~~~~~~~~v~~t~iG~~~~~~~~~ 179 (715)
T TIGR01736 118 GPLDDPK------------------NRYLFEGVVAGISDYGNRIGVPTVGGEVEFDESYNGNPLVNVMCVGLVRKDDIVT 179 (715)
T ss_pred CCCCCcc------------------hHHHHHHHHHHHHHhccccCCCccceEEEEecCcCCCCeEEEEEEEEEchHHccc
Confidence 8753221 222233333333333222 11
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 452 -------------------------------------------------------------------------------- 451 (685)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (685)
T Consensus 180 ~~~a~~GD~Iv~~G~~~G~~g~gg~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~v~a~~Dis~gGL~ 259 (715)
T TIGR01736 180 GKAKGPGNKLVLVGGKTGRDGIGGATFASEELSEEAEEEDRPAVQVGDPFTEKLLIEATLEAVDTGLVKGIKDLGAAGLT 259 (715)
T ss_pred CCCCCCCCEEEEeCCCCCcCCccHHHHHHHHhccccccccCcccccCCcHHHHHHHHHHHHHhccCCEEEEEEcCCchHH
Confidence
Q ss_pred -------------------------------------CCC----------------------------------------
Q psy5568 452 -------------------------------------CSN---------------------------------------- 454 (685)
Q Consensus 452 -------------------------------------c~~---------------------------------------- 454 (685)
+.+
T Consensus 260 ~~l~ema~~s~~G~~I~l~~iP~~~~~~~~~e~~~se~qe~ll~~v~~~~~~~~~~~~~~~g~~~~vIG~v~~~~~~~v~ 339 (715)
T TIGR01736 260 SASSEMAAKGGLGAEIYLDKVPLREPGMTPYEIMLSESQERMLLVVAPEDVEEVLEIFEKYELPASVIGEVTDEGRIRLY 339 (715)
T ss_pred HhHHHHhccCCcEEEEEcccCccCCCCCCHHHHHHhcccceEEEEEChhhHHHHHHHHHHcCCCEEEEEEEecCCeEEEE
Confidence 000
Q ss_pred -------------------------------------------------------------------------------C
Q psy5568 455 -------------------------------------------------------------------------------D 455 (685)
Q Consensus 455 -------------------------------------------------------------------------------D 455 (685)
|
T Consensus 340 ~~g~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~sK~~i~~~~d~~v~~~~~~~pgdD 419 (715)
T TIGR01736 340 YKGEVVADLPIELLADAPEYERPSEPPKYPEEEKEPEPPADLEDAFLKVLSSPNIASKEWVYRQYDHEVQTRTVVKPGED 419 (715)
T ss_pred ECCceEEEeeHHHHcCCCceecccccccccccccccCCcccHHHHHHHHhCCCcccChhhHHhhCCCccCCCeEeccCCc
Confidence 1
Q ss_pred -----------ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHH
Q psy5568 456 -----------RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQA 524 (685)
Q Consensus 456 -----------~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g 524 (685)
+|+++++|.+|+++..|||.+|++||+++++||+++|++|+..+++ +||++|++ |+..++|.+++++
T Consensus 420 aaVi~~~~~~~~glv~t~D~~~~~~~~~P~~~g~~aV~~~vsDiaa~Ga~P~~~~~~-l~~g~p~~-~~~~~~l~~~~~g 497 (715)
T TIGR01736 420 AAVLRIKETGKLGLALTADCNPRYVYLDPYAGAAGAVAEAYRNLAAVGAEPLAAVDC-LNFGNPER-PEVYWQFVEAVKG 497 (715)
T ss_pred eEEEEecCCCceEEEEEecCCCCchhcCHHHHHHHHHHHHHHHHhhcCCeehhheee-eccCCCCC-hhHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999997775 78988865 5566789999999
Q ss_pred HHHHhhhhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcC
Q psy5568 525 MSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLS 604 (685)
Q Consensus 525 ~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg 604 (685)
|.++|+++ |+|++|||+|||+++.+ ..++||++++++|.++++++.+++..+++| | .|+++ |
T Consensus 498 i~~~~~~~----------gv~ivGG~ts~~~~~~~--~~i~pt~~v~~~G~~~~~~~~i~~~~a~~G-d---~i~l~--g 559 (715)
T TIGR01736 498 LGDACRAL----------GTPVVGGNVSLYNETNG--VPIAPTPTIGMVGLVEDVEKLLTSNFKKEG-D---AIYLI--G 559 (715)
T ss_pred HHHHHHHh----------CCCcccceeeeccccCC--CCCCCcceEEEEEeccChhhccCcccCCCC-C---EEEEE--e
Confidence 99999999 99999999999987653 567899999999999887788999999999 5 55554 6
Q ss_pred CCcCccchhHHHHHh-hhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 605 CGQHRVGGSALSQVL-AEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 605 ~~~~~lGGS~la~~~-~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
....+++||.+++.+ +...+..|++ +++.++++++.+++++++|+|.|+||+|+|||+++|+|||+++++|++|+
T Consensus 560 ~~g~~~~G~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~i~~l~~~g~v~a~~DiSdGGL~~aL~ema~~s~~G~~I~ 635 (715)
T TIGR01736 560 ETKDELGGSEYLRVIHGIVSGQVPAV-DLEEEKELADAVREAIRAGLVSAAHDVSRGGLAVALAEMAAASGIGAEVD 635 (715)
T ss_pred CCCCCccHHHHHHHhcCCcCCcCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEeCCcChHHHHHHHHHhCCCceEEEE
Confidence 666889999988865 4556678888 89999999999999999999999999999999999999999999999996
No 9
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=3.9e-55 Score=496.07 Aligned_cols=169 Identities=14% Similarity=0.119 Sum_probs=148.9
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
.|+|++.++||+++.+|||+||++||+||+||++|+|++|++.++| +||++|++. .+ +|.++++||+|+|++|
T Consensus 396 ~~~a~~~~~np~~~~~~p~~g~~~av~ea~rn~~~~Ga~p~~i~~~-~nf~~p~~~--~~-~~~~~~~~~~~a~~~~--- 468 (601)
T PRK14090 396 GGYSLVTHSRADLALQDTYWGTFIAVLESVRKTLSVGAEPLAITNC-VNYGDPDVD--PV-GLSAMMTALKDACEFS--- 468 (601)
T ss_pred CeEEEEcCCCCceeccCHHHHHHHHHHHHHhhHhhhCCcHHHceec-hhcCCCCCC--HH-HHHHHHHHHHHHHHHh---
Confidence 4899999999999999999999999999999999999999999887 899999884 33 8999999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
++|++||||||||++++ ++|||||+|+++|.+++ ++.+++ +.| .|++| |.
T Consensus 469 -------~~p~i~G~~S~~n~~~~--~~i~PT~~~~~vg~~~~-~~~~~~---~~~-----~i~li--g~---------- 518 (601)
T PRK14090 469 -------GVPVASGNASLYNTYQG--KPIPPTLVVGMLGKVNP-QKVAKP---KPS-----KVFAV--GW---------- 518 (601)
T ss_pred -------CCCeecceeccccCCCC--ccCCCCceEEEEEEecc-ccccCC---CCC-----eEEEE--CC----------
Confidence 99999999999999874 79999999999999988 777776 344 46665 42
Q ss_pred HHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcC-CcEEEEcCCcchHHHHHHHHHhcCCCCeEE
Q psy5568 616 SQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDG-QVLSGHDISDGGLLICLLEMDVGANSPKGW 679 (685)
Q Consensus 616 a~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~g-lv~A~HDvSdGGL~~aLaEMa~ag~~G~~I 679 (685)
|.+ |++.++++++.+.++|++| +|.|+||+|+|=- +|.+ ++.|.+|
T Consensus 519 -----------~~~-~~~~~~~~~~~~~~~i~~~~~~~~~hd~s~g~~-----~~~~-~~~~~~~ 565 (601)
T PRK14090 519 -----------NDF-ELEREKELWREIRKLSEEGAFILSSSQLLTRTH-----VETF-REYGLKI 565 (601)
T ss_pred -----------CCC-CHHHHHHHHHHHHHHHhCCCeEEEEEEcccCch-----hhhh-ccccccc
Confidence 455 8999999999999999999 9999999999844 5554 6678754
No 10
>PHA03366 FGAM-synthase; Provisional
Probab=100.00 E-value=5.8e-51 Score=494.84 Aligned_cols=209 Identities=30% Similarity=0.480 Sum_probs=197.7
Q ss_pred CceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhc
Q psy5568 455 DRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMG 534 (685)
Q Consensus 455 D~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~ 534 (685)
++|+||++|++|+++++||++||++||+||+|||+++|+.|++.|++++|||||++ |+++++|+++|++|+|+|++|
T Consensus 688 ~~G~A~siGe~p~~~~lDP~~Ga~~AVaEAl~NL~aa~~~~L~~i~lslNf~wP~~-p~~~a~L~eav~ai~e~C~~L-- 764 (1304)
T PHA03366 688 VPGTCSALGEQGYKVQLDPILGAKYAIVEALTNLMLAPVANLEDITITLSVTWPPT-DQAASELYRALAACKEFCREL-- 764 (1304)
T ss_pred CCEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHhhcCCccchheEEEEEecCCCC-cchHHHHHHHHHHHHHHHHHc--
Confidence 48999999999999999999999999999999999999999989999999999996 899999999999999999999
Q ss_pred CCCccccCCeeeeeeeceeecc--ccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccch
Q psy5568 535 NTRREWIKPIMFSGGIGTMKHE--LKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGG 612 (685)
Q Consensus 535 ~~~~~~~~gipivgGkdSm~~~--~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGG 612 (685)
||||++||+||||+ .+++.+..|||++++++++|+|+++++||+||++| +.|++|+++. ..+|||
T Consensus 765 --------gIpIv~G~~S~yne~~~~~~~i~~pptIvisg~~~~~dv~k~vTp~lk~~G----~~L~lIg~~~-~~~LgG 831 (1304)
T PHA03366 765 --------GVNFTFTSASSSPRQDQPPQPGPLFNTIVFTASAPVPSSTPRLTPDLKKPG----SALVHLSISP-EYTLAG 831 (1304)
T ss_pred --------CCCEeeeecccccccCCCCccccCCCeEEEEEEEEccCcccccCcccCCCC----CEEEEEeCCC-CCCcch
Confidence 99999999999997 33456888999999999999999999999999998 4899997763 479999
Q ss_pred hHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 613 SALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 613 S~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+|+|+++++++.+|++ |++.+|++|+++++|+++|+|+|+||||+|||++||+||||++++|++|+
T Consensus 832 S~laq~~~~~g~~~P~v-d~~~lk~~f~~v~~Li~~glI~A~HDVSdGGL~~ALaEMAfag~~G~~Id 898 (1304)
T PHA03366 832 SVFEQIFGLKSGTLPDI-SPSYLKNLFRAVQHLISEGLVVSGHDVSDGGLIACLAEMALAGGRGVTIT 898 (1304)
T ss_pred hHHHHhhccccCCCCCC-CHHHHHHHHHHHHHHHHcCCeEEEEECCcCHHHHHHHHHHHhCCCcEEEE
Confidence 99999999999999999 89999999999999999999999999999999999999999999999997
No 11
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=100.00 E-value=4e-49 Score=477.24 Aligned_cols=206 Identities=28% Similarity=0.410 Sum_probs=190.6
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
+|+||++|+||+++.+||++||++||+||+|||+++|+..+..+.+++||+||++ ++.+++|+++|++|+|+|++|
T Consensus 593 ~G~a~a~Ge~p~~~~~DP~~ga~~AV~Ea~~Nlaaa~~~~l~pi~lt~n~~~P~~-~~~~~~L~~av~ai~e~C~~L--- 668 (1202)
T TIGR01739 593 SCVCSALGEQTYKVQADPKRGATYAITEALLNLSLSPWNTLEDVIITLSVTWSPT-DHVYSLLKDALRACKDFCEEL--- 668 (1202)
T ss_pred eEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHHhCCccccCCcEEEEEecCCCC-CchHHHHHHHHHHHHHHHHHc---
Confidence 7999999999999999999999999999999999999877888888889999987 567899999999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCC-cceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNV-GSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSA 614 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ip-pTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~ 614 (685)
||||+|||+|+ ++.. +++..| ||+++++++.++|+++++||++|++| + .|++|++++ +.+||||+
T Consensus 669 -------gipiv~G~~S~-s~~~-~~v~~Ptptivisa~a~v~dv~k~vTp~lk~~G-~---~L~LIg~t~-~~~LgGS~ 734 (1202)
T TIGR01739 669 -------GVSFTVTSAAS-SPTQ-DSGSAPFMSIVFSASCPVLLSAKKITPDLKSHG-S---HLIWLSLHP-SYTLAGSI 734 (1202)
T ss_pred -------CCcEEeeeccc-cCCC-CCccCCCCeEEEEEEEEecCHHhCcCcccCCCC-C---EEEEEcCCC-CCCchHhH
Confidence 99999999998 4333 346667 89999999999999999999999998 4 888887653 58999999
Q ss_pred HHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 615 LSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 615 la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+|++++.++.+|++ |++.++++++++++|+++|+|.|+||+|+|||++||+||||++++|++|+
T Consensus 735 laq~~~~~~~~~P~v-d~~~lk~~~~~v~~li~~glI~S~HDvSdGGL~~aLaEMA~ag~~G~~Id 799 (1202)
T TIGR01739 735 FEQILGLSFIRLPAL-SPVSLKKLLSALQTLVKEGVIVSGHDVSDGGLVACVAEMALSGGKGVRIT 799 (1202)
T ss_pred HHHhhccccCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEECCcCHHHHHHHHHHHhCCCcEEEE
Confidence 999999999999999 89999999999999999999999999999999999999999999999997
No 12
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=5e-38 Score=334.53 Aligned_cols=233 Identities=27% Similarity=0.361 Sum_probs=191.9
Q ss_pred HHHhhhhhhcccccccccceeEEECCccChHhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCce
Q psy5568 271 ECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYT 350 (685)
Q Consensus 271 El~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~ 350 (685)
||+||||+||||||||+| ++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~------------~~~~~~~------------------------------------------- 25 (313)
T cd02203 1 ELGMFAQMWSEHCRHKSF------------KSLLKMI------------------------------------------- 25 (313)
T ss_pred ChhhhhhhhhcccCCcch------------HHHHHHh-------------------------------------------
Confidence 899999999999999987 7899986
Q ss_pred ecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCc
Q psy5568 351 ITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFA 430 (685)
Q Consensus 351 ~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~ 430 (685)
|+++||+||||||+.++||.|+.+++++.+||+.+| ||+|++.++.++++++..|...
T Consensus 26 -----~~~~~~~e~~~~~~~~~p~~~g~~~v~~~vsDiaam--Ga~P~~~~~~l~~p~~~~~~~~--------------- 83 (313)
T cd02203 26 -----WAVVFKVETHNHPSAIEPFGGAATGVGGIIRDILSM--GARPIALLDGLRFGDLDIPGYE--------------- 83 (313)
T ss_pred -----hEEEEEeccCCCCCCcCCcccHhhhhhhhhhccccc--CCEEEEEeeEEeecCCcccccc---------------
Confidence 368999999999999999999999999999999999 9999999999999875533310
Q ss_pred chHHHHHHhcccccCCCCCCCCCCCceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCC
Q psy5568 431 TPLNILIEASNGASDYGNIEPCSNDRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAK 510 (685)
Q Consensus 431 ~~~~i~~~~~~G~s~YgN~~Pc~~D~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~ 510 (685)
|| .
T Consensus 84 --------------------~~---------------------------------------------------------~ 86 (313)
T cd02203 84 --------------------PK---------------------------------------------------------G 86 (313)
T ss_pred --------------------cc---------------------------------------------------------c
Confidence 11 1
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCC
Q psy5568 511 LPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSP 590 (685)
Q Consensus 511 ~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~ 590 (685)
.+...+.|.++++||.++|+++ |+|++||++++++++. .+|++.++++|.+++ .+.++...+++
T Consensus 87 ~~~~~~~l~~~~~Gi~~~~~~~----------gv~lvGGdt~~~~~~~-----~~p~~~~~~~G~~~~-~~~~~~~~a~~ 150 (313)
T cd02203 87 KLSPRRILDGVVAGISDYGNCI----------GIPTVGGEVRFDPSYY-----GNPLVNVGCVGIVPK-DHIVKSKAPGP 150 (313)
T ss_pred ccCHHHHHHHHHHHHHHHHHHh----------CCceeeeEEEEECCcC-----CCceEEEEEEEEEeh-hhcccCCCCCC
Confidence 1223567899999999999999 9999999999887542 268899999999975 56677788899
Q ss_pred CCCCcceEEEEEcCC--CcCccchhHHHHH-hhh-----hcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchH
Q psy5568 591 RLGYSSSLLWIDLSC--GQHRVGGSALSQV-LAE-----VRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGL 662 (685)
Q Consensus 591 G~d~~s~lv~i~lg~--~~~~lGGS~la~~-~~~-----~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL 662 (685)
| | .|+++ |. +...++|+.++.. ++. ..+..+.. ++...+++++.++.+++.++|+|+||+|+|||
T Consensus 151 G-D---~I~l~--G~~~~~~gl~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~v~a~~DiS~gGL 223 (313)
T cd02203 151 G-D---LVVLV--GGRTGRDGIGGATFSSKELSENSSELDRPAVQVG-DPFMEKKLQEAILEARETGLIVGIQDLGAGGL 223 (313)
T ss_pred C-C---EEEEe--cCCCCCCCccHHHHHHHHhcCccccccCCCCCcc-CHHHHHHHHHHHHHHHhcCCEEEEEecCCchH
Confidence 9 5 45544 53 3467889988774 332 12345554 67777888999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCeEEE
Q psy5568 663 LICLLEMDVGANSPKGWV 680 (685)
Q Consensus 663 ~~aLaEMa~ag~~G~~I~ 680 (685)
+++|+|||.++++|++|+
T Consensus 224 ~~~L~ema~as~~G~~I~ 241 (313)
T cd02203 224 SSAVSEMAAKGGLGAEID 241 (313)
T ss_pred HHHHHHHHhcCCceEEEE
Confidence 999999999999999986
No 13
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=100.00 E-value=1.9e-32 Score=286.54 Aligned_cols=207 Identities=27% Similarity=0.378 Sum_probs=171.8
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccC--CccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhh
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAK--ISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARM 533 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~G--a~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~ 533 (685)
.|+||+++++++++.+|||.||++||+|++|||+++| ++|+..+. ||++|...|...+.|.+++++|.++|+++
T Consensus 1 ~~~a~~~~~~~~~~~~~p~~g~~~av~~~~~diaa~G~~a~P~~~~~---~l~~~~~~p~~~~~l~~~~~gi~~a~~~~- 76 (272)
T cd02193 1 YGEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSA---NWMASAGHPGEDAILYDAVKGVAELCNQL- 76 (272)
T ss_pred CccEEeecCCCCccccChHHHHHHHHHHHHhhhhhcCCCccceEEee---ecccCCCCCCHHHHHHHHHHHHHHHhHhh-
Confidence 4799999999999999999999999999999999999 99988665 45566555656678999999999999999
Q ss_pred cCCCccccCCeeeeeeeceeecccc----C--CcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCc
Q psy5568 534 GNTRREWIKPIMFSGGIGTMKHELK----E--KASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQ 607 (685)
Q Consensus 534 ~~~~~~~~~gipivgGkdSm~~~~~----~--~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~ 607 (685)
|+|++|||+|+|+++. + ....++||++++++|.+++... +++.++++| | .|++++...+.
T Consensus 77 ---------g~pivgG~~s~~~~~~~~~~~~~~~~~~~p~~~vt~~G~~~~~~~-~~~~~~~~G-d---~I~~~g~~~~~ 142 (272)
T cd02193 77 ---------GLPIPVGKDRMSMKTRWQEGNEQREMTHPPSLVISAFGRVRDDRH-TLPQLSTEG-N---ALLLIGGGKGH 142 (272)
T ss_pred ---------CCcccCCEeccccceecccCCCceEEEeCCEEEEEEEEEecCcce-ecccCCCCC-C---EEEEECCCCCC
Confidence 9999999999998641 1 1246789999999999987654 448889999 5 56665322234
Q ss_pred CccchhHHHHH---hhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 608 HRVGGSALSQV---LAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 608 ~~lGGS~la~~---~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
..++||.+.+. ...++...+...|++.++++++.+++++++|+|+|+||+|+|||+++|+|||+++++|++|+
T Consensus 143 ~g~~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~a~hDvs~GGL~~aL~Ema~~s~~G~~i~ 218 (272)
T cd02193 143 NGLGGTALASVALSYRQLGDKSAQVRDPAQEKGFYEAMQALVAAGKLLAWHDRGAGGLLVALAELVFAGHCGVQVD 218 (272)
T ss_pred CccchHHHHhhhhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEeeCCcchHHHHHHHHHhcCCCEEEEE
Confidence 58999998885 22233333334589999999999999999999999999999999999999999999998875
No 14
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.97 E-value=6.7e-30 Score=264.79 Aligned_cols=206 Identities=31% Similarity=0.365 Sum_probs=170.6
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
+++++++|++|+++..||+.+|++||+++++||+++|++|+. +.++++|+||...+++.++|.+++++|.++|+++
T Consensus 13 ~~~~~t~d~~~~~~~~~p~~~g~~av~~~~sDiaa~Ga~P~~-~~~~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~--- 88 (264)
T cd02204 13 KGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLA-ITDCLNFGNPEKPEGEMGQLVEAVLGLGDACRAL--- 88 (264)
T ss_pred eEEEEEcCCCCceeeeCHHHHHHHHHHHHHHHHhhhCCchHh-eeeceeccCCCCCcchHHHHHHHHHHHHHHHHHh---
Confidence 578999999999999999999999999999999999999995 4556899999764325578999999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|++||++|++++..+ ..++|+++++++|.+++.+..+++..+++| | .|+++ +....+.+|+.+
T Consensus 89 -------gv~ivGG~t~~~~~~~~--~~~~~~~~~t~~G~~~~~~~~~~~~~a~~G-d---~i~~~--g~~g~~~~~~~~ 153 (264)
T cd02204 89 -------GTPVIGGKDSLYNETEG--VAIPPTLVIGAVGVVDDVRKIVTLDFKKEG-D---LLYLI--GETKDELGGSEY 153 (264)
T ss_pred -------CCCcccceeCCccCCCC--cccCCcCeEEEEEEccChhhccCcccCCCC-C---EEEEE--CCCCCCCCCcHH
Confidence 99999999999887653 456899999999999876655565888999 5 55555 544445556655
Q ss_pred HHH-hhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEEe
Q psy5568 616 SQV-LAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWVK 681 (685)
Q Consensus 616 a~~-~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~~ 681 (685)
.+. ++......+. .+++.++++++.++++.+.+.|+|+||+|||||+.+|+|||+++++|++|+.
T Consensus 154 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~i~a~~DiSdGGL~~~l~ema~~s~~G~~i~~ 219 (264)
T cd02204 154 ALAYHGLGGGAPPL-VDLEREKALFDAVQELIKEGLVLSAHDVSDGGLAVALAEMAFAGGLGAEVDL 219 (264)
T ss_pred HHHhcCCCCCCCCC-CCHHHHHHHHHHHHHHHhCCCEEEEeeccccHHHHHHHHHHhcCCceEEEEc
Confidence 443 3333333344 4789999999999999999999999999999999999999999999999863
No 15
>KOG1907|consensus
Probab=99.97 E-value=1.6e-31 Score=300.88 Aligned_cols=94 Identities=59% Similarity=1.044 Sum_probs=86.7
Q ss_pred CCCCCCCCCCCCCCCCcChhHHHhhcCCccccccCcCCcccccceeeeecccc---CccccccccceeeecCCccccccc
Q psy5568 1 YKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNKFGEPLILGFARSYGQHC---NGERREWIKPIMFSGGIGTMKHEL 77 (685)
Q Consensus 1 ~~~pwe~~~~~~p~~~a~~l~i~~~~~~ga~~~~n~fg~p~~~g~~rt~~~~~---~~~~~~~~kpim~agg~g~~~~~~ 77 (685)
|+||||+-+++||.+|||||||||||||||||||||||||+|.||||||++++ +|+|||||||||||||+|+||..|
T Consensus 362 ~~qPwE~l~f~yP~~iA~pl~ImIEAsnGaSdygNkFGeP~I~Gy~rtfg~~v~~~~gerrey~KPIMfsgGiG~i~~~~ 441 (1320)
T KOG1907|consen 362 YKQPWEDLDFGYPYHIASPLDIMIEASNGASDYGNKFGEPVISGYARTFGMRVLLENGERREYHKPIMFSGGIGTIRKQH 441 (1320)
T ss_pred CCCCCcccccCCccccCCHHHHHhhCcCChhhhcccccchhhhhhhhhhcccccccCccccccccceEeecccCccCHHH
Confidence 68999988999999999999999999999999999999999999999999985 689999999999999999999999
Q ss_pred cccCCCCccceEEEEEcc
Q psy5568 78 KEKASPNVVQMAIIRYYS 95 (685)
Q Consensus 78 ~~k~~~~~~~m~ml~l~G 95 (685)
+.|.++.+|+ .++.+-|
T Consensus 442 ~~K~~~apg~-~likiGG 458 (1320)
T KOG1907|consen 442 ARKEPIAPGQ-LLIKIGG 458 (1320)
T ss_pred hhcCCCCCCC-EEEEecC
Confidence 9999998875 4444443
No 16
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.91 E-value=6.5e-24 Score=259.16 Aligned_cols=205 Identities=13% Similarity=0.002 Sum_probs=174.7
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhcc--CCccccccccccccccCC------------CCCchHHH----
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFA--KISDLKDVKCSGNWMWAA------------KLPGEGAA---- 517 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~--Ga~pl~~v~~s~N~~~p~------------~~p~~~~~---- 517 (685)
.++++++..+++.+.+|||.||+.+|.+++||++++ |++|++.++| +||++|. ..|+.+++
T Consensus 289 ~~i~~k~Ethnhpt~i~Py~GAatgvgg~iRD~~a~GrGa~PiA~~d~-l~fg~p~~~~~~~~~e~~~~~P~~~~~p~~I 367 (1310)
T TIGR01735 289 VHILMKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRGAKPKAGLTG-FCVSNLNIPGLEQPWEDPFQKPERIASPLDI 367 (1310)
T ss_pred eEEEEEeccCCCCCccCchhhHHHHHhHhHhChhhhCCCCeeeeeeee-eecCCCCCCCCCCccccccCCchhhccHHHH
Confidence 789999999999999999999999999999999999 9999999998 8999982 13666777
Q ss_pred HHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeecccc----C-CcccCCcceEEEEEeeeCCCCcccCCCCcCCCC
Q psy5568 518 LFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELK----E-KASPNVGSLVISTYAPCPDIRQVVTPDIKSPRL 592 (685)
Q Consensus 518 L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~----~-~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~ 592 (685)
|.++++|++++|.++ |+|+++|++|.|++.. | ....++|+++++++|.+++ .+ ++..++++|
T Consensus 368 l~e~~~G~~~~gn~~----------G~P~v~G~vs~f~~~~~~~~g~~~~~~~P~~~~g~vG~i~~-~~-~~~~~~~~G- 434 (1310)
T TIGR01735 368 MIEAPLGAAAFNNEF----------GRPNLLGYFRTFELKASLPGGQVRGYHKPIMLAGGIGSIDA-EH-IQKGEIEPG- 434 (1310)
T ss_pred HHHHHHHHHHHhhhh----------CCcccceeeeeccccccccccccccccCCccEEEEEEEech-hh-cccCCCCCC-
Confidence 999999999999999 9999999999887742 1 1235789999999999998 44 666778888
Q ss_pred CCcceEEEEEcCC--CcCccchhHHHHH-hhh-----hcCCCCCcCCHHHHHHHHHHHHHHHHcC---CcEEEEcCCcch
Q psy5568 593 GYSSSLLWIDLSC--GQHRVGGSALSQV-LAE-----VRGPSPDVEDAAALVRAFNVTQRLIQDG---QVLSGHDISDGG 661 (685)
Q Consensus 593 d~~s~lv~i~lg~--~~~~lGGS~la~~-~~~-----~g~~~P~v~d~~~~k~~~~~v~~li~~g---lv~A~HDvSdGG 661 (685)
| .||+| |. ++..+|||.++.+ .+. ..+.+|.. |++.+|++++++.++++.+ +|.|+||+|.||
T Consensus 435 ~---~ivll--Gg~~~rdglgGs~~ss~~~g~~~~~~~~~~Vq~g-dp~~ek~~~~~i~~~~~~~~~~~i~sihD~gaGG 508 (1310)
T TIGR01735 435 A---LLIVL--GGPAMLIGLGGGAASSMVSGTNTADLDFASVQRG-NPEMERRCQEVIDRCWQLGEKNPIISIHDVGAGG 508 (1310)
T ss_pred C---EEEEE--CCCCCCCCccHHHHHHHHhCCCcccccCCCCCCC-CHHHHHHHHHHHHHHHHcCCCCceEEEeccCccH
Confidence 4 56665 54 3568999998775 344 33456776 9999999999999877765 999999999999
Q ss_pred HHHHHHHHHhcCCCCeEEE
Q psy5568 662 LLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 662 L~~aLaEMa~ag~~G~~I~ 680 (685)
|..||.|||+.+++|++|+
T Consensus 509 ls~al~Ema~~~g~G~~i~ 527 (1310)
T TIGR01735 509 LSNALPELIHDGGRGAVID 527 (1310)
T ss_pred HHHHHHHHHhcCCceEEEE
Confidence 9999999999999999875
No 17
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.89 E-value=6.7e-22 Score=225.49 Aligned_cols=193 Identities=13% Similarity=0.106 Sum_probs=157.6
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
.+++++++.+++.+.+|||.||+.+|.+++||++++|++|++.+++ ++|. ..|.++++||+++|.++
T Consensus 61 ~~l~~k~Eshn~ps~idPy~GAat~Vgg~irDIaamGA~Pialld~-L~~~---------~~l~~vv~GI~~~~n~~--- 127 (601)
T PRK14090 61 YSIAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTAIFDS-LHMS---------RIIDGIIEGIADYGNSI--- 127 (601)
T ss_pred CEEEEEECccCCcccCCHHHHHHHHHHHHHhhHhhcCCChheeEEc-CChH---------HHHHHHHHHHHHHHHHh---
Confidence 4679999999999999999999999999999999999999997765 5652 36888999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCC--CcCccchh
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSC--GQHRVGGS 613 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~--~~~~lGGS 613 (685)
|+|++||++++++++. .+|++.++++|.+++ .+.++...+++| | .|+++ |. ++..++|+
T Consensus 128 -------GVP~VGGdt~~~~~y~-----~~plv~vt~vG~v~~-~~iv~~~~a~~G-D---~Ivl~--G~~tGrdGi~Ga 188 (601)
T PRK14090 128 -------GVPTVGGELRISSLYA-----HNPLVNVLAAGVVRN-DMLVDSKASRPG-Q---VIVIF--GGATGRDGIHGA 188 (601)
T ss_pred -------CCCEeeEEEEEeCCcc-----CCCceEEEEEEEEcC-ccccccCCCCCC-C---EEEEE--cCCCCCCCcchH
Confidence 9999999999987654 358899999999986 667778888999 5 45554 53 34456565
Q ss_pred HHHH-Hh-hhhcCCC-CCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 614 ALSQ-VL-AEVRGPS-PDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 614 ~la~-~~-~~~g~~~-P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.++. .+ ++..... .++.|+..++++++++.++++.++|.++||+|.|||+++|+|||.++++|++|+
T Consensus 189 s~as~~l~~~~~~~~~vq~gd~~~ek~l~e~~l~~~~~glI~a~~DigaGGLa~AL~EmA~~sg~G~~Id 258 (601)
T PRK14090 189 SFASEDLTGEKATKLSIQVGDPFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGGLGAIVH 258 (601)
T ss_pred HHHHHHhcCCcccccccccCCHHHHHHHHHHHHhHHhcCCeEEeeCCCCCcHHHHHHHHHHHhCCeEEEE
Confidence 5433 23 2211111 123378888999999999999999999999999999999999999999999886
No 18
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=99.87 E-value=2.5e-21 Score=196.02 Aligned_cols=163 Identities=20% Similarity=0.206 Sum_probs=134.9
Q ss_pred eEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCC
Q psy5568 458 IATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTR 537 (685)
Q Consensus 458 ~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~ 537 (685)
++++++..+.....||+.+|+.+|+++++||+++|++|+..+. ++++|... ....+.+.++++.++|+++
T Consensus 2 l~~~~D~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~~~~~---~l~~~~~~--~~~~~~~~~~Gi~~~~~~~----- 71 (222)
T cd00396 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIALLA---SLSLSNGL--EVDILEDVVDGVAEACNQL----- 71 (222)
T ss_pred eEEEECCCCCCcCCCCccHHHHHHHHhHHHHHhcCCccHHHhh---heccCCCC--CHHHHHHHHHHHHHHHHHc-----
Confidence 5788998888888999999999999999999999999976443 45666442 3467889999999999999
Q ss_pred ccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHH
Q psy5568 538 REWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQ 617 (685)
Q Consensus 538 ~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~ 617 (685)
|+|++||++++++.+ ...+|++.++++|.+++.+ .+.+..+++| | .|+++ |
T Consensus 72 -----gi~ivgG~t~~~~~~----~~~~~~i~~t~~G~~~~~~-~~~~~~~~~G-d---~lv~~--g------------- 122 (222)
T cd00396 72 -----GVPIVGGHTSVSPGT----MGHKLSLAVFAIGVVEKDR-VIDSSGARPG-D---VLILT--G------------- 122 (222)
T ss_pred -----CCeEeceeeEEccCC----cCCCceEEEEEEEEecCCc-cccccCCCCC-C---EEEEe--C-------------
Confidence 999999999987544 2347899999999998644 3446778899 5 45544 3
Q ss_pred HhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 618 VLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 618 ~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
++.++++.+++.++|+||+|+|||+.+|+|||.++++|++|+
T Consensus 123 ---------------------~~~~~~l~~~~~v~a~~Dvs~GGl~~~l~ema~~s~~g~~i~ 164 (222)
T cd00396 123 ---------------------VDAVLELVAAGDVHAMHDITDGGLLGTLPELAQASGVGAEID 164 (222)
T ss_pred ---------------------hHHHHHHHHhCCeeEEEeCCCCcHHHHHHHHHHhcCCEEEEe
Confidence 234567777889999999999999999999999999999986
No 19
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=99.82 E-value=2.1e-19 Score=189.57 Aligned_cols=184 Identities=14% Similarity=0.052 Sum_probs=141.0
Q ss_pred ceeEEeccc-CCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhc
Q psy5568 456 RAIATSIGE-QPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMG 534 (685)
Q Consensus 456 ~G~A~s~G~-~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~ 534 (685)
..++++++. .+.+...|||..|+.||+.+++||+++|++|+..+.+ +++ | . ...|.+.++++.++|+++
T Consensus 46 ~~lvit~D~~~~~~~~~~p~~~G~~av~~~vsDiaa~Ga~P~~~~~~-l~~--p----~-~e~l~~i~~Gi~~a~~~~-- 115 (283)
T cd02192 46 GYLLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAMGGRPLAMVDA-LWS--P----S-AEAAAQVLEGMRDAAEKF-- 115 (283)
T ss_pred cEEEEEecccccccccCCHHHHHHHHHHHHHHHHHhcCCEeeeeeee-ecC--C----C-HHHHHHHHHHHHHHHHHc--
Confidence 457888876 5656678999999999999999999999999886665 554 3 1 256999999999999999
Q ss_pred CCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc-chh
Q psy5568 535 NTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV-GGS 613 (685)
Q Consensus 535 ~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l-GGS 613 (685)
|+|++||++++++ ..|++.++++|.++. .+.+ ...+++| | .|+++ +....++ |.+
T Consensus 116 --------gi~ivGGdt~~~~--------~~~~i~vt~iG~~~~-~~~~-r~~a~~G-D---~I~vt--g~l~g~~~g~~ 171 (283)
T cd02192 116 --------GVPIVGGHTHPDS--------PYNALSVAILGRARK-DLLI-SFGAKPG-D---RLILA--IDLDGRVHPSP 171 (283)
T ss_pred --------CCcEecccCCCCC--------CCCeEEEEEEEEEcC-Cccc-cCCCCCC-C---EEEEE--eCCCCcccccc
Confidence 9999999997532 247899999999975 3444 6667899 5 44443 3222233 222
Q ss_pred HHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 614 ALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 614 ~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.+. + +..+.. +.+.++..++.++++.+.+.++|+||+|+|||+.+|+|||.++++|++|+
T Consensus 172 ~~~--~----~~~~~~-~~~~~~~~~~~~~~l~~~~~v~a~~DiSdGGL~~~L~ela~~sg~G~~Id 231 (283)
T cd02192 172 PPN--W----DATTMK-SPALLRRQIALLPELAERGLVHAAKDISNPGIIGTLGMLLEASGVGAEID 231 (283)
T ss_pred ccC--c----cccccC-CHHHHHHHHHHHHHHHHcCCCceeecCCCCcHHHHHHHHHHhcCCcEEEe
Confidence 111 1 112222 56777888889999998899999999999999999999999999999985
No 20
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=99.81 E-value=4.1e-19 Score=187.47 Aligned_cols=191 Identities=17% Similarity=0.118 Sum_probs=139.7
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
..++++++..++.. .|||..|+.||+.+++||+++|++|+..+.+ +++..+.+ |...++|.+.++++.++|+++
T Consensus 53 ~~lv~stD~~~~~~-~~p~~~G~~av~~~~sDiaa~Ga~P~~~~~~-l~lp~~~~-~~~~~~l~~~~~Gi~~~~~~~--- 126 (287)
T cd02195 53 LALVQTTDFFPPIV-DDPYLFGRIAAANALSDIYAMGAKPLSALAI-VTLPRKLP-ALQEEVLREILAGGKDKLREA--- 126 (287)
T ss_pred cEEEEEecCCCCCC-CCHHHHHHHHHHHHHHHHHhcCchHHHHHHH-hcCCCccc-hhhHHHHHHHHHHHHHHHHHc---
Confidence 56889999887755 7999999999999999999999999886664 67755433 345688999999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|++||+++.. + .|++.++++|.++. .+.++....++| | +|++ .. .+|.+.+
T Consensus 127 -------g~~ivGGdt~~~--------~-~~~i~~t~~G~~~~-~~~~~~~~a~~G-D----~I~l--tg---~lG~~~~ 179 (287)
T cd02195 127 -------GAVLVGGHTIEG--------P-EPKYGLSVTGLVHP-NKILRNSGAKPG-D----VLIL--TK---PLGTGIL 179 (287)
T ss_pred -------CCcEEeeeeccC--------C-CcEEEEEEEEEEcc-hheecCCCCCCC-C----EEEE--cC---CchHHHH
Confidence 999999999731 1 36788899999975 566777777899 5 5555 22 2676654
Q ss_pred HHH--hhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQV--LAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~--~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
... .+...+..+.. ..+...+....+.+++.++.++|+||+|+|||+.+|+|||.++++|++|+
T Consensus 180 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~a~~DiS~gGL~~~L~~~a~~sg~g~~Id 245 (287)
T cd02195 180 FAAEMAGLARGEDIDA-ALESMARLNRAAAELLRKYGAHACTDVTGFGLLGHLLEMARASGVSAEID 245 (287)
T ss_pred HHHHHhccCChHHHHH-HHHHHHhhhHHHHHHHHhcCCeEeEecCCcHHHHHHHHHHhhcCCeEEEE
Confidence 322 12111111110 12222333333344555677999999999999999999999999999986
No 21
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=99.80 E-value=5.1e-19 Score=189.82 Aligned_cols=186 Identities=12% Similarity=0.049 Sum_probs=141.2
Q ss_pred ceeEEecccC-CceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhc
Q psy5568 456 RAIATSIGEQ-PIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMG 534 (685)
Q Consensus 456 ~G~A~s~G~~-p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~ 534 (685)
.+++++++.. +.....|||.+++.||+.+++||+++|++|+..+.+ +++ | . ...|.+.+++|.++|+++
T Consensus 56 ~~lvistD~~~~~~~~~~p~~~G~~av~~nlsDiaamGa~P~~~~~~-L~~--~--~---~~~l~~~~~Gi~~a~~~~-- 125 (323)
T TIGR03267 56 DILLLAADGIWGKLLDADPWWAGYCAVLVNVNDIAAMGGKPVGMVNV-LSI--N--D---VDVCREVLEGMREGAWKF-- 125 (323)
T ss_pred CEEEEEecCcCCcccccChhHhhHHhhhhhhhhHHhcCCEehhHhhh-hcC--C--C---HHHHHHHHHHHHHHHHHc--
Confidence 4577777754 455668999999999999999999999999987665 565 3 1 245889999999999999
Q ss_pred CCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhH
Q psy5568 535 NTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSA 614 (685)
Q Consensus 535 ~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~ 614 (685)
|+|++||+++... . .+++.++++|.++. .+.++...+++| | +|++ .+ .++|+.
T Consensus 126 --------gi~ivGGdT~~~~-------~-~~~i~vt~iG~~~~-~~~~~r~~a~~G-D----~I~v-tg----~l~g~~ 178 (323)
T TIGR03267 126 --------GVPVVGGHTHPDT-------P-YNALDVAIVGIAKE-DCIIRSDTAKPG-D----LIIF-AI----DLDGRP 178 (323)
T ss_pred --------CCCEEccccCCCC-------C-cceeeEEEEEEEcC-cceeeCCCCCCC-C----EEEE-EE----cCCCcc
Confidence 9999999986310 1 24678899999865 567888888999 5 4444 12 244443
Q ss_pred HHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 615 LSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 615 la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+.... +....+...+++.++..++.++++..++.+.|+||+|||||+.+|+|||.++++|++|+
T Consensus 179 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiSdGGL~~~L~ema~~s~~G~~I~ 242 (323)
T TIGR03267 179 YPSFP--LNWDTTTMKSPDYLRAQMDAVVEIAERKLVKAGKDISNPGLIGTLGMLLEASRVGAEVD 242 (323)
T ss_pred ccccc--cCccchhccCHHHHHHHHHHHHHHHHhCCceEEEcCCCCcHHHHHHHHHhhcCCcEEEE
Confidence 22210 00011222356778888888999998899999999999999999999999999999885
No 22
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.79 E-value=2.9e-19 Score=219.31 Aligned_cols=206 Identities=12% Similarity=0.015 Sum_probs=165.6
Q ss_pred CceeEEecccCCceeecCHHHHHHHHHHHHHhhhhcc--CCccccccccccccccCCC----C--------Cch----HH
Q psy5568 455 DRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFA--KISDLKDVKCSGNWMWAAK----L--------PGE----GA 516 (685)
Q Consensus 455 D~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~--Ga~pl~~v~~s~N~~~p~~----~--------p~~----~~ 516 (685)
+..+++..-.+..-+.++||-||...|.-.+|++.++ |+.|++-.+. +-|+.+.. . |.. ..
T Consensus 282 ~~~~~fK~ETHNhPsaiePf~GAaTG~GG~iRD~~~~G~Ga~piag~~~-~~~~~l~~~~~~~~~e~~~~~P~~~~~p~~ 360 (1290)
T PRK05297 282 PAHILMKVETHNHPTAISPFPGAATGSGGEIRDEGATGRGSKPKAGLTG-FSVSNLRIPGFEQPWEEDYGKPERIASALD 360 (1290)
T ss_pred ceEEEEEeccCCCCCccCCCCcccccCCceeccccccCCCCeeeeccee-EEecCCCCCCCCCccccccCCccccCCHhH
Confidence 3678999999999999999999999999999999999 9999887643 34544421 1 111 12
Q ss_pred HHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeecccc-CC----cccCCcceEEEEEeeeCCCCcccCCCCcCCC
Q psy5568 517 ALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELK-EK----ASPNVGSLVISTYAPCPDIRQVVTPDIKSPR 591 (685)
Q Consensus 517 ~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~-~~----~v~ippTlvisa~g~v~d~~~~vtp~~k~~G 591 (685)
-+.+++.|++++|.++ |+|+++|++|.||+.. +. .-.+.|+++++++|.+++ ++.++..+ ++|
T Consensus 361 i~~~~~~Gis~~gn~~----------G~Pvv~G~Vs~yne~~~~~~~~~~~~i~P~~~vg~vG~i~~-~~~~~~~~-~~G 428 (1290)
T PRK05297 361 IMIEGPLGGAAFNNEF----------GRPNLLGYFRTFEQKVNSHNEEVRGYHKPIMLAGGIGNIRA-DHVQKGEI-PVG 428 (1290)
T ss_pred hhhhccccHHHHhhhh----------CCCccceEEEEEeccccCccccccccccceEEEEEEEEEeh-hhccccCC-CCC
Confidence 4678888999999999 9999999999998753 20 135789999999999998 66666555 788
Q ss_pred CCCcceEEEEEcCCC--cCccchhHHHHH-hhhhc-----CCCCCcCCHHHHHHHHHHHHHHHHc---CCcEEEEcCCcc
Q psy5568 592 LGYSSSLLWIDLSCG--QHRVGGSALSQV-LAEVR-----GPSPDVEDAAALVRAFNVTQRLIQD---GQVLSGHDISDG 660 (685)
Q Consensus 592 ~d~~s~lv~i~lg~~--~~~lGGS~la~~-~~~~g-----~~~P~v~d~~~~k~~~~~v~~li~~---glv~A~HDvSdG 660 (685)
| .||++ |.. +..+|||.++.+ ++... +.+|.. |++.+|++.+++.++++. ++|.|+||+|+|
T Consensus 429 -d---~Ivll--G~~~~rdglgGs~~ss~~~g~~~~~~~~~~Vq~~-d~~~ek~~~~~i~~~~~~~~~~lI~s~hDvgaG 501 (1290)
T PRK05297 429 -A---KLIVL--GGPAMRIGLGGGAASSMASGQSSEDLDFASVQRG-NPEMERRCQEVIDRCWQLGDDNPILSIHDVGAG 501 (1290)
T ss_pred -C---EEEEE--CCCCCCCCccHHHHHHHHhcccccccccCCCCcC-CHHHHHHHHHHHHHHHHhcccCCeeEEecCCcc
Confidence 5 55555 543 458999988775 45544 567777 999999999999888764 899999999999
Q ss_pred hHHHHHHHHHhcCCCCeEEE
Q psy5568 661 GLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 661 GL~~aLaEMa~ag~~G~~I~ 680 (685)
||++||+|||+++++|++|+
T Consensus 502 GLa~AL~Ema~~~g~G~~id 521 (1290)
T PRK05297 502 GLSNAFPELVNDGGRGGRFD 521 (1290)
T ss_pred HHHHHHHHHHHhcCceEEEE
Confidence 99999999999999999886
No 23
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=99.77 E-value=5.4e-18 Score=179.71 Aligned_cols=196 Identities=11% Similarity=-0.031 Sum_probs=137.0
Q ss_pred eeEEecccCCceeecC-----HHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 457 AIATSIGEQPIKGLVD-----PKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 457 G~A~s~G~~p~~~~~D-----P~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
.++++++.-....... ++..|+.||+++++||+++|++|+..+.+ +++..+ ....+.+.++++.++|++
T Consensus 21 ~l~~~~D~~~~~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~~~~~-l~~~~~-----~~~~l~~~~~Gi~~~~~~ 94 (297)
T cd02196 21 VLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPLFFLDY-IATGKL-----DPEVAAEIVKGIAEGCRQ 94 (297)
T ss_pred EEEEecCCcchHHHHHHHcCCHhHHHHHHHHHhHHHHHHcCCEeHHHHhh-hhcCCC-----CHHHHHHHHHHHHHHHHH
Confidence 3456665544444444 46679999999999999999999987775 676321 235688899999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++....+. ...-+.+.++++|.+++ ++.+++..+++| | .|+++ +.......
T Consensus 95 ~----------gi~ivGGdt~~~~~~~---~~~~~~isvt~iG~~~~-~~~~~~~~a~~G-d---~I~~t--g~~G~~~~ 154 (297)
T cd02196 95 A----------GCALLGGETAEMPGVY---AEGEYDLAGFAVGVVEK-DKIIDGSKIKPG-D---VLIGL--PSSGLHSN 154 (297)
T ss_pred c----------CCeEeeecceEccCcc---cCCceeEEEEEEEEEec-cccccccCCCCC-C---EEEEc--cCcchhhh
Confidence 9 9999999998543211 00125688899999976 667888888999 5 45443 44434444
Q ss_pred hhHHHH-HhhhhcCCCCCcCC-----------HHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEE
Q psy5568 612 GSALSQ-VLAEVRGPSPDVED-----------AAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGW 679 (685)
Q Consensus 612 GS~la~-~~~~~g~~~P~v~d-----------~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I 679 (685)
|+.+.+ .+.+.....|++ + .+..+...+.+..+.+.+.|+|+||+|+|||+.+|+||+-+ ++|++|
T Consensus 155 g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~a~~DiS~gGL~~~L~e~a~~-~~g~~I 232 (297)
T cd02196 155 GYSLVRKILFEEGLDYDDP-EPGLGKTLGEELLTPTRIYVKPILPLLEKVLVKGMAHITGGGLPENLPRVLPE-GLGAVI 232 (297)
T ss_pred HHHHHHHHHhhcccccccc-cccccchHHHHHHHHHHHHHHHHHHHHhcCCceEEEeCCCCchhhccHhhccC-CceEEE
Confidence 665443 444332223332 1 12223445566667777889999999999999999999865 999998
Q ss_pred E
Q psy5568 680 V 680 (685)
Q Consensus 680 ~ 680 (685)
+
T Consensus 233 d 233 (297)
T cd02196 233 D 233 (297)
T ss_pred e
Confidence 6
No 24
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.77 E-value=1.9e-19 Score=219.22 Aligned_cols=94 Identities=57% Similarity=1.089 Sum_probs=86.0
Q ss_pred CCCCCCCCCCCCCCCCcChhHHHhhcCCccccccCcCCcccccceeeeecccc-CccccccccceeeecCCccccccccc
Q psy5568 1 YKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNKFGEPLILGFARSYGQHC-NGERREWIKPIMFSGGIGTMKHELKE 79 (685)
Q Consensus 1 ~~~pwe~~~~~~p~~~a~~l~i~~~~~~ga~~~~n~fg~p~~~g~~rt~~~~~-~~~~~~~~kpim~agg~g~~~~~~~~ 79 (685)
+.+|||..++++|++|++|++||+++++|+|+|||+||+|+|+||||||++.. +|++||||||||++||+|.|+..|+.
T Consensus 344 ~~~p~e~~~~~~p~~l~~~~~I~~~~~~G~s~YGN~~G~P~v~G~~~~F~~~~~~g~~~~~~kPim~ag~vG~~~~~~v~ 423 (1307)
T PLN03206 344 SYAPWEDSSFVYPSNLASPLQILIDASNGASDYGNKFGEPLIQGYTRTFGMRLPNGERREWLKPIMFSGGIGQIDHTHLT 423 (1307)
T ss_pred CcCccccccccCcccCCCHhHHhhccCCccccCCcccCCcccCcEEEEeccccccccccccCCCceEEEEEEEEcHHHcc
Confidence 35899987899999999999999999999999999999999999999999987 78999999999999999999999999
Q ss_pred cCCCCccceEEEEEcc
Q psy5568 80 KASPNVVQMAIIRYYS 95 (685)
Q Consensus 80 k~~~~~~~m~ml~l~G 95 (685)
|..+++| +.++.+-|
T Consensus 424 k~~~~~G-~~vv~lGG 438 (1307)
T PLN03206 424 KGEPDIG-MLVVKIGG 438 (1307)
T ss_pred cCCCCCC-CEEEEECC
Confidence 9887775 66666654
No 25
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=99.77 E-value=1.3e-17 Score=176.29 Aligned_cols=190 Identities=13% Similarity=0.056 Sum_probs=129.3
Q ss_pred ceeEEecccCCceeecCH-----HHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhh
Q psy5568 456 RAIATSIGEQPIKGLVDP-----KRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLP 530 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP-----~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~ 530 (685)
..++++++.. ..|| +.-|+.||+++++||+++|++|+..+.+ +++ |...| .+++.+.+++|.++|+
T Consensus 37 ~~lv~ttD~~----~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~~~~~-l~l--p~~~~--~~~l~~~~~Gi~~~~~ 107 (293)
T cd02197 37 GRLAFTTDSF----VVSPLFFPGGDIGKLAVCGTVNDLAMMGAKPLYLSLG-FIL--EEGFP--LEDLERIVKSMAEAAR 107 (293)
T ss_pred ceEEEEecCc----cccCcccCchhHHHHHHHhhHHHHHHcCCcchhheEE-EEC--CCCCC--HHHHHHHHHHHHHHHH
Confidence 4567777644 1245 4449999999999999999999987665 565 54433 5789999999999999
Q ss_pred hhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc
Q psy5568 531 ARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV 610 (685)
Q Consensus 531 ~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l 610 (685)
++ |+|++||+++.|++..+ -.+.+.++++|.++.. +.+.+.-.++| | +|++ .|.. ...
T Consensus 108 ~~----------g~~ivGGdt~~~~~~~~----~~~~i~~t~~G~~~~~-~~~~r~~a~~G-D----~i~v-tG~~-G~~ 165 (293)
T cd02197 108 EA----------GVKIVTGDTKVVPKGKA----DGIFINTTGIGVIPRG-VIISPSNIRPG-D----KIIV-SGTI-GDH 165 (293)
T ss_pred Hc----------CCEEEeceeEeccCCcc----CceEEEEEEEEEEcCC-ccccccCCCCC-C----EEEE-eCCc-cHH
Confidence 99 99999999998765321 1356777999999753 33545556889 5 4555 2321 112
Q ss_pred chhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHc-CCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 611 GGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQD-GQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 611 GGS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~-glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|++.++...+......+. ...+.......++++. +.+.|+||+|+|||+.+|+|||.++++|++|+
T Consensus 166 ~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~a~~DiSdgGL~~~L~~~a~~sg~g~~I~ 232 (293)
T cd02197 166 GAAILAAREGLGFETDIE----SDCAPLNGLVEALLEAGPGIHAMRDPTRGGLAAVLNEIARASGVGIEIE 232 (293)
T ss_pred HHHHHhcccCCCcchhhh----hhhhhhhHHHHHHHhcCCCceEEEcCCcchHHHHHHHHHHHcCCeEEEe
Confidence 223332211110011111 1122333445556665 47999999999999999999999999999885
No 26
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=99.75 E-value=3.6e-17 Score=172.49 Aligned_cols=187 Identities=14% Similarity=0.043 Sum_probs=129.2
Q ss_pred ceeEEecccCCce----eecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 456 RAIATSIGEQPIK----GLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 456 ~G~A~s~G~~p~~----~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
..++++++..+.. ...|||..|+.||+++++||+|+|++|+..+.+ +++ |... ...++.+.+++|.++|++
T Consensus 35 ~~lv~t~D~~~~~~~f~~~~~p~~~G~~av~~~~sDi~a~Ga~P~~~~~~-l~~--p~~~--~~~~l~~i~~Gi~~a~~~ 109 (291)
T cd02194 35 GRLVVTTDTLVEGVHFPPDTTPEDIGWKALAVNLSDLAAMGARPLGFLLS-LGL--PPDT--DEEWLEEFYRGLAEAADR 109 (291)
T ss_pred CeEEEEecccccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCccceeEEE-EEC--CCCC--CHHHHHHHHHHHHHHHHH
Confidence 5678888865531 234999999999999999999999999986654 565 4332 246799999999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++.++ .|++.++++|.+++. +.+++...++| | .|+++ |....+..
T Consensus 110 ~----------g~~liGGdt~~~~---------~~~i~vt~iG~~~~~-~~~~~~~a~~G-D---~I~lt--g~~G~~~~ 163 (291)
T cd02194 110 Y----------GVPLVGGDTTSGS---------ELVISVTALGEVEKG-KPLRRSGAKPG-D---LLYVT--GTLGDAAA 163 (291)
T ss_pred c----------CCeEEcccCCCCC---------CeEEEEEEEEecCCC-CceecCCCCCC-C---EEEEe--CCccHHHH
Confidence 9 9999999998531 689999999999753 45666667889 5 44443 43222223
Q ss_pred hhHHHHHhhhhcCCCCCcCCHHHHHHHH-------HHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 612 GSALSQVLAEVRGPSPDVEDAAALVRAF-------NVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 612 GS~la~~~~~~g~~~P~v~d~~~~k~~~-------~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+.+.+ .. ...|.. +.+.....+ +..+.+.+ +.++||||+|+ ||+.+|+|||.++++|++|+
T Consensus 164 g~~~~~--~~--~~~~~~-~~~~~~~~~~~p~~~~~~~~~l~~-~~v~a~~DiSd-GL~~~l~ela~~s~~g~~i~ 232 (291)
T cd02194 164 GLALLL--GG--LKLPEE-LYEELIERHLRPEPRLELGRALAE-GLATAMIDISD-GLLADLGHIAEASGVGAVID 232 (291)
T ss_pred HHHHHh--CC--CCCChh-hHHHHHHHhcCCCCcHHHHHHHHh-CCCeEEEEchH-hHHHHHHHHHHHcCCeEEEe
Confidence 332221 10 011111 111111111 12333333 67999999999 59999999999999999986
No 27
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=99.75 E-value=2.4e-17 Score=176.09 Aligned_cols=188 Identities=15% Similarity=0.059 Sum_probs=128.8
Q ss_pred ceeEEecccC----CceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 456 RAIATSIGEQ----PIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 456 ~G~A~s~G~~----p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
.+++++++.. ......|||.+|+.||+++++||+|+|++|+..+ ++++.|++. ++ ..|.+.+++|.++|++
T Consensus 36 ~~lvis~D~~~~~~~~~~~~~p~~~G~~av~~~~sDiaa~Ga~P~~~~---~~~~~P~~~-~~-~~l~~i~~Gi~~a~~~ 110 (317)
T TIGR01379 36 RDLVLTTDTLVEGVHFPPDTTPEDLGWKAVAVNLSDLAAMGATPKWFL---LSLGLPSDL-DE-AWLEAFYDGLFECAKQ 110 (317)
T ss_pred CeEEEEeccccCCcCCCCCCCHHHHHHHHHHHHHHHHHHcCCcccEEE---EEEEcCCCC-CH-HHHHHHHHHHHHHHHH
Confidence 5678888843 3344459999999999999999999999998755 367778664 23 4599999999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++.++ -|++.++++|.+++ .+.+++...++| | .|+++ +.. ..+
T Consensus 111 ~----------g~~ivGG~t~~~~---------~~~i~vt~iG~~~~-~~~~~~~~a~~G-d---~I~lt--g~~--G~~ 162 (317)
T TIGR01379 111 Y----------GVPLVGGDTVSSP---------ELVVTVTAIGEAPK-GRALLRSGAKPG-D---LVFVT--GTL--GDS 162 (317)
T ss_pred c----------CCeEECccCCCCC---------CcEEEEEEEEEeCC-CCceecCCCCCC-C---EEEEc--Cch--hHH
Confidence 9 9999999998653 37899999999875 344666666888 5 45544 322 112
Q ss_pred hhHHHHHhhhhcCCCCCcCCHHHHHHH------HHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 612 GSALSQVLAEVRGPSPDVEDAAALVRA------FNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 612 GS~la~~~~~~g~~~P~v~d~~~~k~~------~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+..+............+. ..+..++. ++....+.+ .+.|+||+|+ ||+.+|+|||.++++|++|+
T Consensus 163 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~l~~--~v~a~~DvS~-GL~~~l~ema~~sg~g~~i~ 233 (317)
T TIGR01379 163 AAGLALLLKGKKEPDEED-DEELLQRHLRPEPRVEEGLALAG--YANAAIDVSD-GLASDLGHIAEASGVGIVID 233 (317)
T ss_pred HHHHHHHhcCCccCcchh-HHHHHHHhcCCCChHHHHHHHhh--hcceeEEchH-hHHHHHHHHHHHcCCcEEEe
Confidence 222221211111111111 11122222 122333333 6899999998 59999999999999999885
No 28
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=99.75 E-value=7.3e-18 Score=198.21 Aligned_cols=203 Identities=15% Similarity=0.144 Sum_probs=155.4
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
..+++++........+|||.+|+.+|..++||++++|++|+..++. +.|..|.. +...+.|.+.++|+.++|.++
T Consensus 69 ~~lv~~~e~h~~p~~~~P~~~a~~~v~~~vsDi~amGa~P~~~~~~-l~~~~~~~-~~~~~~l~~~~~Gi~~~~~~~--- 143 (715)
T TIGR01736 69 YAVVFKMESHNHPSAIEPYNGAATGVGGILRDILSMGARPIALLDS-LRFGPLDD-PKNRYLFEGVVAGISDYGNRI--- 143 (715)
T ss_pred eEEEEEeccCCCCCCcCCCCchhhcccceecccccCCCeEeeEEEE-eccCCCCC-cchHHHHHHHHHHHHHhcccc---
Confidence 3456776666666668999999999999999999999999886653 45544422 233456899999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|++||++++...+.+ .|.+.++++|.++. .+.++...+++| | .|++++-..+...+||+.+
T Consensus 144 -------Gv~ivGG~t~~~~~~~~-----~~~v~~t~iG~~~~-~~~~~~~~a~~G-D---~Iv~~G~~~G~~g~gg~~~ 206 (715)
T TIGR01736 144 -------GVPTVGGEVEFDESYNG-----NPLVNVMCVGLVRK-DDIVTGKAKGPG-N---KLVLVGGKTGRDGIGGATF 206 (715)
T ss_pred -------CCCccceEEEEecCcCC-----CCeEEEEEEEEEch-HHcccCCCCCCC-C---EEEEeCCCCCcCCccHHHH
Confidence 99999999987654432 36788999999975 456777767899 5 5555421134678899887
Q ss_pred HHH-hhh--hcCCCCC--cCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQV-LAE--VRGPSPD--VEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~-~~~--~g~~~P~--v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+.. ++. .....|. ..++..++.++++.+++.++++|.|+||+|+|||+.+|.|||.++++|++|+
T Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~v~a~~Dis~gGL~~~l~ema~~s~~G~~I~ 276 (715)
T TIGR01736 207 ASEELSEEAEEEDRPAVQVGDPFTEKLLIEATLEAVDTGLVKGIKDLGAAGLTSASSEMAAKGGLGAEIY 276 (715)
T ss_pred HHHHhccccccccCcccccCCcHHHHHHHHHHHHHhccCCEEEEEEcCCchHHHhHHHHhccCCcEEEEE
Confidence 653 222 1112333 2366778899999999999999999999999999999999999999999884
No 29
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=99.74 E-value=8.2e-17 Score=172.42 Aligned_cols=190 Identities=14% Similarity=0.043 Sum_probs=132.1
Q ss_pred ceeEEecccCCceeecCHHH-----HHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhh
Q psy5568 456 RAIATSIGEQPIKGLVDPKR-----GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLP 530 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~-----ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~ 530 (685)
..++++++.. ..||+. .++.||+.+++||+++|++|+..+.+ ++ .|.+.+ .++|.+.++++.++|+
T Consensus 32 ~~lv~ttD~~----~~~p~~~~~~~iG~~av~~n~sDiaamGa~P~~~~~~-l~--lp~~~~--~~~l~~~~~Gi~~a~~ 102 (320)
T TIGR02124 32 GRLAFSTDSF----VVDPLFFPGGDIGKLAVCGTVNDVAVSGAKPLYLSCG-FI--LEEGFP--IEDLERIVKSMAEAAR 102 (320)
T ss_pred CeEEEEecCC----ccCCcccCcccHHHHHHHHHHHHHHHcCCcchhhEEE-EE--cCCCCC--HHHHHHHHHHHHHHHH
Confidence 3466776643 134554 69999999999999999999886654 44 354433 5689999999999999
Q ss_pred hhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc
Q psy5568 531 ARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV 610 (685)
Q Consensus 531 ~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l 610 (685)
++ |+|++||+++++++... -.+.+.++++|.++..+ .++...+++| | +|++ .|.. ...
T Consensus 103 ~~----------gi~ivGGdt~~~~~~~~----~~~~i~~t~~G~~~~~~-~~~r~~a~~G-D----~I~l-tg~~-G~~ 160 (320)
T TIGR02124 103 KA----------GVKIVTGDTKVVEKGKA----DGIFINTTGIGVIPSGI-PISAHNLQPG-D----KIIV-SGTI-GDH 160 (320)
T ss_pred Hc----------CCEEEeeeeEEccCCCC----CcEEEEEEEEEEEcCCc-cccccCCCCC-C----EEEE-eCCc-cHH
Confidence 99 99999999998763221 13677789999997654 7888888999 5 4444 2322 122
Q ss_pred chhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcC-CcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 611 GGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDG-QVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 611 GGS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~g-lv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|++.++. .... ..+.. -....+.....+..+.+.+ .++|+||+|+|||+.+|+|||.++++|++|+
T Consensus 161 g~~l~~~-~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~v~a~~DiSdgGL~~~L~ela~~s~~g~~I~ 227 (320)
T TIGR02124 161 GAAILAV-REGL--GFETN-LESDCAPLNGLVETLLNAGPAVHAMRDATRGGLAAVLNEWAQASGVGIVIE 227 (320)
T ss_pred HHHHHHh-hccc--CCCcc-chhhhhhhHHHHHHHHhccCCceEEECCCCccHHHHHHHHHHHcCCeEEEe
Confidence 3333322 1111 11111 0112233444555666665 6999999999999999999999999999985
No 30
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=99.73 E-value=4.4e-17 Score=175.53 Aligned_cols=198 Identities=13% Similarity=0.027 Sum_probs=134.0
Q ss_pred ceeEEecccCCceee----cCHHH-HHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhh
Q psy5568 456 RAIATSIGEQPIKGL----VDPKR-GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLP 530 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~----~DP~~-ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~ 530 (685)
.+++++++....... .+|+. .++.||+.+++||+++|++|+..+++ +++..+ + ...+.+.+++|.++|+
T Consensus 52 ~~l~~t~D~~g~~~~~~~~~~~~~~~G~~av~~n~sDiaa~Ga~P~~~~~~-l~~~~~----~-~~~~~~i~~Gi~~a~~ 125 (332)
T TIGR00878 52 PVLVSGTDGVGTKLLVAEAMNKHDTIGIDLVAMNVNDLLVQGAEPLFFLDY-LAVGKL----D-PEVASQIVKGIAEGCK 125 (332)
T ss_pred ceEEEeccccccchHHHHHcCchHHHHHHHHHHHHHHHHHcCCcHHHHHHH-HhcCCC----C-HHHHHHHHHHHHHHHH
Confidence 346667665322222 34444 79999999999999999999998776 565332 2 4578999999999999
Q ss_pred hhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc
Q psy5568 531 ARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV 610 (685)
Q Consensus 531 ~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l 610 (685)
++ |+|++||+++........ . ...+.++++|.+++ .+.++...+++| | .|+++ |....+.
T Consensus 126 ~~----------g~~ivGG~t~~~~~~~~~--~-~~~i~~t~iG~~~~-~~~~~~~~a~~G-D---~i~lt--g~~G~~~ 185 (332)
T TIGR00878 126 QA----------GCALVGGETAEMPGMYRG--G-HYDLAGTAVGVVEK-DEIITGEKVKPG-D---VLIGL--GSSGIHS 185 (332)
T ss_pred Hc----------CCEEEceeeeECCCcccC--C-ceEEEEEEEEEEcC-ccccCccCCCCC-C---EEEEE--CCchHHH
Confidence 99 999999999933211100 0 13556889999976 667888888999 5 45444 5443445
Q ss_pred chhHHHH-HhhhhcCC-CCCc--CC-HHHHH-------HHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeE
Q psy5568 611 GGSALSQ-VLAEVRGP-SPDV--ED-AAALV-------RAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKG 678 (685)
Q Consensus 611 GGS~la~-~~~~~g~~-~P~v--~d-~~~~k-------~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~ 678 (685)
+|+.+++ .++...+. .|.. .+ ..... ++++.+.++++++.|.||||+|+|||+.+|+||+ ++++|++
T Consensus 186 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~p~~~~~~~~~~l~~~~~i~a~~DiS~gGL~~~L~e~~-~sg~g~~ 264 (332)
T TIGR00878 186 NGLSLVRKVLEDIAGLDYEDTPEDFGKTLGEELLEPTRIYVKPILELIKEVEVHGLAHITGGGLLENIPRRL-PDGLKAV 264 (332)
T ss_pred HHHHHHHHHhhhccccccccccccccchHHHHHhhHhHHHHHHHHHHHhcCCceEEEeCCCccHhhhHHHhc-cCCceEE
Confidence 5665544 33322111 1211 00 01111 1234567788889999999999999999999997 6799999
Q ss_pred EE
Q psy5568 679 WV 680 (685)
Q Consensus 679 I~ 680 (685)
|+
T Consensus 265 I~ 266 (332)
T TIGR00878 265 ID 266 (332)
T ss_pred Ee
Confidence 87
No 31
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=99.72 E-value=6.6e-17 Score=172.75 Aligned_cols=186 Identities=20% Similarity=0.127 Sum_probs=127.0
Q ss_pred ceeEEecc--cCCcee---ecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhh
Q psy5568 456 RAIATSIG--EQPIKG---LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLP 530 (685)
Q Consensus 456 ~G~A~s~G--~~p~~~---~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~ 530 (685)
.+++++++ ..+... ..|||.+|+.||+++++||+|+|++|+..+ ++++.|++. ++ ..|.+.+++|.++|+
T Consensus 37 ~~lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~Ga~P~~~~---~~l~~p~~~-~~-~~l~~i~~Gi~~~~~ 111 (318)
T PRK05731 37 QRLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAAFL---LALALPKDL-DE-AWLEALADGLFELAD 111 (318)
T ss_pred CeEEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcceEE---EEEEcCCCC-CH-HHHHHHHHHHHHHHH
Confidence 57888886 333333 689999999999999999999999998766 356677663 33 459999999999999
Q ss_pred hhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc
Q psy5568 531 ARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV 610 (685)
Q Consensus 531 ~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l 610 (685)
++ |+|++||+++.. + -|++.++++|.+++.+ .+++...++| | .|+++ +......
T Consensus 112 ~~----------g~~ivGG~t~~~--------~-~~~i~vt~iG~~~~~~-~~~~~~a~~G-d---~i~lt--g~~G~~~ 165 (318)
T PRK05731 112 RY----------GAELIGGDTTRG--------P-DLSISVTAIGDVPGGR-ALRRSGAKPG-D---LVAVT--GTLGDSA 165 (318)
T ss_pred Hh----------CCeEECcccCCC--------C-CcEEEEEEEEEcCCCC-cccccCCCCC-C---EEEEE--CCccHHH
Confidence 99 999999999731 1 2799999999997644 3666666888 5 44444 3322223
Q ss_pred chhHHHHHhhhhcCCCCCcCCHHHHHH-H------HHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 611 GGSALSQVLAEVRGPSPDVEDAAALVR-A------FNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 611 GGS~la~~~~~~g~~~P~v~d~~~~k~-~------~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.|+.+.+. ....+.. ..+...+ + ++....+ .+.+.|+||+|+ ||+.+|+|||.++++|++|+
T Consensus 166 ~g~~~~~~----~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~--~~~v~a~~DiS~-GL~~~l~ema~~s~~g~~i~ 234 (318)
T PRK05731 166 AGLALLLN----GLRVPDA-DAAALISRHLRPQPRVGLGQAL--AGLASAAIDISD-GLAADLGHIAEASGVGADID 234 (318)
T ss_pred HHHHHHhc----CCCCChh-hHHHHHHHhcCCCCCHHHHHHH--hhhchhheechH-hHHHHHHHHHHHCCCeEEEe
Confidence 33332221 1111111 0011111 0 1111122 234899999998 79999999999999999996
No 32
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.72 E-value=5.8e-17 Score=190.91 Aligned_cols=203 Identities=14% Similarity=0.130 Sum_probs=152.8
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
..+++++..+.....+|||.||+.+|..++||++++|++|+..+.. +.|..+ ..+.....|.+.++|+.++|..+
T Consensus 81 ~~lv~~~Esh~~p~~~~P~~ga~~~v~~~i~Di~amGa~P~a~~~~-l~~~~~-~~~~~~~~l~~~~~Gi~~~~n~~--- 155 (724)
T PRK01213 81 QAVVFKIESHNHPSAVEPYQGAATGVGGILRDIFSMGARPIALLDS-LRFGEL-DHPKTRYLLEGVVAGIGGYGNCI--- 155 (724)
T ss_pred cEEEEEeccCCCCCccCCccchhhcccceeccccccCceeeeeeeE-EEccCC-CCCcHHHHHHHHHHHHHHHHHhc---
Confidence 3456665544455668999999999999999999999999886654 555433 11223455788999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|++||++.+...+.+ .|.+.++++|.++. .+.++...+++| | .|++++-..++..+||+.+
T Consensus 156 -------Gvp~vgG~t~~~~~~~~-----~p~v~~~~iG~~~~-~~~~r~~~~~~G-d---~Ii~~G~~tg~~Gigg~~~ 218 (724)
T PRK01213 156 -------GVPTVGGEVYFDESYNG-----NPLVNAMCVGLVRH-DDIVLAKASGVG-N---PVVYVGAKTGRDGIGGASF 218 (724)
T ss_pred -------CCCEeeEEEEEeCCcCC-----CceEEEEEEEEEcH-HHcccCCCCCCC-C---EEEEeCCCcCcccCcHHHH
Confidence 99999999986544332 36788999999874 345666666799 5 5665521145677899877
Q ss_pred HHH-hhh-hcCCC--CCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQV-LAE-VRGPS--PDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~-~~~-~g~~~--P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+.. +.. ..... +++.|+...+++++++.++++.++|.++||+|.|||+.+|.|||.++++|++|+
T Consensus 219 ~s~~~~~~~~~~~~~vq~g~~~~~~~l~~~~~~~~~~~~v~a~~D~g~gGL~~al~Ema~~s~~G~~I~ 287 (724)
T PRK01213 219 ASAELSEESEEKRPAVQVGDPFMEKLLIEACLELIKTGLVVGIQDMGAAGLTCSSSEMAAKGGLGIELD 287 (724)
T ss_pred HHhhhhccccccCcccccCCcHHHHHHHHHHHHHhccCCEEEEEECCCCcHHHhHHHHhccCCcEEEEE
Confidence 653 322 11122 334477788899999999999999999999999999999999999999999885
No 33
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=99.71 E-value=8.3e-17 Score=170.00 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=125.3
Q ss_pred CHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeec
Q psy5568 472 DPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIG 551 (685)
Q Consensus 472 DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkd 551 (685)
+|+..++.+|+.+++||+++|++|+..+.. +++ |... ...++.+.++|+.++|+++ |+|++||++
T Consensus 55 ~~~~iG~~av~~~~sDi~amGa~P~~~~~~-l~~--p~~~--~~~~l~~~~~Gi~~~~~~~----------gi~ivGG~t 119 (298)
T cd06061 55 AGKDAGWLAVHIAANDIATSGARPRWLLVT-LLL--PPGT--DEEELKAIMREINEAAKEL----------GVSIVGGHT 119 (298)
T ss_pred CCcceeeehhhhhHHHHHhcCCCCceeEEE-EEc--CCCC--CHHHHHHHHHHHHHHHHHc----------CCeEEeeee
Confidence 478889999999999999999999875554 565 4332 2467999999999999999 999999999
Q ss_pred eeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHH-H-hhhhcCCCCCc
Q psy5568 552 TMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQ-V-LAEVRGPSPDV 629 (685)
Q Consensus 552 Sm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~-~-~~~~g~~~P~v 629 (685)
++++.. . .|++.++++|.+++. ..+++...+|| | .|+++ |.. ..+|+.+.. . .+.+....+..
T Consensus 120 ~~~~~~-----~-~~~i~vt~~G~~~~~-~~~~~~~a~~G-d---~i~lt--g~~--G~~~~~l~~~~~~~~~~~~~~~~ 184 (298)
T cd06061 120 EVTPGV-----T-RPIISVTAIGKGEKD-KLVTPSGAKPG-D---DIVMT--KGA--GIEGTAILANDFEEELKKRLSEE 184 (298)
T ss_pred EEcCCC-----C-ccEEEEEEEEEEccc-ccccccCCCCC-C---EEEEe--CCc--hHHHHHHHHHhhHHHHhhhcCHH
Confidence 875432 1 279999999999764 34566677899 5 44443 321 223333322 1 22333233322
Q ss_pred CCHHHHHHHHHHH---HH--HHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 630 EDAAALVRAFNVT---QR--LIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 630 ~d~~~~k~~~~~v---~~--li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+.+..++++..+ ++ ++.+..++|+||+|||||+.+|+|||.++++|++|+
T Consensus 185 -~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~DiSdGGL~~~l~~la~~s~~g~~i~ 239 (298)
T cd06061 185 -ELREAAKLFYKISVVKEALIAAEAGVTAMHDATEGGILGALWEVAEASGVGLRIE 239 (298)
T ss_pred -HHHHHHHhhhhhhhHHHHHHhhhcCeeEEEeCCccHHHHHHHHHHHHcCCeEEEE
Confidence 344445555443 22 122226899999999999999999999999999985
No 34
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=99.67 E-value=4.4e-16 Score=167.34 Aligned_cols=182 Identities=10% Similarity=0.010 Sum_probs=125.0
Q ss_pred CHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeec
Q psy5568 472 DPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIG 551 (685)
Q Consensus 472 DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkd 551 (685)
.|+.-|+.||+.+++||+|+|++|+..+.+ +++ | + ++ ...+.+.++++.++|+++ |+|++||++
T Consensus 73 ~~~~iG~~av~~n~sDIaamGa~P~~~~~~-l~~--~-~-~~-~~~~~~~~~Gi~~~~~~~----------g~~ivGGdt 136 (327)
T PRK05385 73 KHDTIGIDLVAMCVNDLLVQGAEPLFFLDY-IAT--G-K-LD-PEVAAQVVKGIAEGCEQA----------GCALIGGET 136 (327)
T ss_pred CHhhHHHHHHHHHHHHHHHcCCCHHHHHHH-Hhc--C-C-CC-HHHHHHHHHHHHHHHHHc----------CCeEeCccc
Confidence 467889999999999999999999987754 565 3 2 22 356889999999999999 999999999
Q ss_pred eeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHH-HHhhhhcCCC--CC
Q psy5568 552 TMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALS-QVLAEVRGPS--PD 628 (685)
Q Consensus 552 Sm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la-~~~~~~g~~~--P~ 628 (685)
+...... ....+++.++++|.++. .+.++...+++| | .|+++ +.+....+|+.+. +.+....... +.
T Consensus 137 ~~~~~~~---~~~~~~i~~t~~G~~~~-~~~~~r~~a~~G-D---~I~~t--g~~G~~g~g~~~l~~~~~~~~~~~~~~~ 206 (327)
T PRK05385 137 AEMPGMY---HEGDYDLAGFAVGVVEK-DKIIDGSKVKEG-D---VLIGL--ASSGLHSNGYSLVRKILEVLDLDDTLPE 206 (327)
T ss_pred eECCCcc---cCCCeeEEEEEEEEEec-ccccCcCCCCCC-C---EEEEe--CCcchhhhHHHHHHHHHHhccccccccc
Confidence 7432211 01135678899999874 566788888999 5 45443 3332222233332 3332111000 00
Q ss_pred cC-------CHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 629 VE-------DAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 629 v~-------d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.+ .....++..+.++.+.+++.+.|+||+|+|||+.+|+||| ++++|++|+
T Consensus 207 ~~~~~~~~~~l~p~~~~~~~~~~l~~~~~v~a~~DiSdgGL~~~L~eia-~sgvg~~Id 264 (327)
T PRK05385 207 LDGKTLGEELLEPTRIYVKPVLALLKEVDVKGMAHITGGGFIENLPRVL-PEGLGAEID 264 (327)
T ss_pred cccchHHHHHhhhhHHHHHHHHHHHhcCCceEEEeCCCchHhhhhHHhc-CCCceEEEe
Confidence 00 0111122335566678888899999999999999999999 999999987
No 35
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=99.57 E-value=8e-14 Score=151.21 Aligned_cols=191 Identities=16% Similarity=0.129 Sum_probs=124.7
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
..++++++.-......+|+..++.||+.+++||+++|++|+..+. +.+.|.+.+ ...+.+.++++.++|+++
T Consensus 47 ~~lv~ttDgvh~~~~~~p~~~G~~av~~nvSDIaAmGa~P~~~l~---sl~lp~~~~--~~~l~~i~~Gi~~a~~~~--- 118 (346)
T cd02691 47 EYIVVAIDGIHSRLSDFPFLAGFHATRAALRDVMVMGARPVALLS---DIHLADDGD--VGKLFDFTAGVTAVSEAT--- 118 (346)
T ss_pred CeEEEEeCCCCCCcccChHHHHHHHHHHHHHHHHHcCCchHHhhe---eeecCCCCC--HHHHHHHHHHHHHHHHHc---
Confidence 456777764433334589999999999999999999999987432 334565532 466889999999999999
Q ss_pred CCccccCCeeeeeeeceee-ccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhH
Q psy5568 536 TRREWIKPIMFSGGIGTMK-HELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSA 614 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~-~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~ 614 (685)
|++++||+++.+ ..+. ...+.++.++++|.++. ..+...-.+|| | +|++ .+ .+||+.
T Consensus 119 -------gv~lvGGdT~~~~~~~~---~~~~l~~svT~iG~~~~--~~~~r~gA~pG-D----~I~v-tg----~~Gg~~ 176 (346)
T cd02691 119 -------GVPLVAGSTLRIGGDMV---LGDRLVGGVGAVGRSKS--DPSRRKNAEPG-D----LILM-TE----GAGGGT 176 (346)
T ss_pred -------CCeEEeeeeEEecCCcc---cCCceEEEEEEEEEecc--ccccccCCCCC-C----EEEE-EC----CccHHH
Confidence 999999999743 1111 11234556899998754 23333445789 5 5555 12 244432
Q ss_pred H--HHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcC---CcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 615 L--SQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDG---QVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 615 l--a~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~g---lv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
. .+++... +++-........++..+.+.+.+ .+.||||+|||||+.+|.|||.++++|++|+
T Consensus 177 ~~~l~ll~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~v~am~DiSdGGL~~~L~ela~aSgvg~~Id 243 (346)
T cd02691 177 ITTTAIYHGM----PDVVEETLNVDFIKACEALRDSGLVSKVHSMTDVTNGGIRGDALEISKTAGVSLVFD 243 (346)
T ss_pred HHHHHHHccc----hhHHHhhccHHHHHHHHHHHHhCCCCCeEEEEcCCCchHHHHHHHHHHHcCCEEEEE
Confidence 2 2222110 11100000012233344444433 5899999999999999999999999999984
No 36
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=99.56 E-value=1.6e-14 Score=149.59 Aligned_cols=179 Identities=15% Similarity=0.109 Sum_probs=130.1
Q ss_pred eEEe-cccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCC
Q psy5568 458 IATS-IGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNT 536 (685)
Q Consensus 458 ~A~s-~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~ 536 (685)
+.++ -|..+++...||++.++.+|.-.+++++++|++|+..++.. |... ..+-.+++++|.+.++.|
T Consensus 56 lliaadGi~g~l~~~dPw~aG~csvLVn~~DV~amGG~Pv~~vd~i----sa~s----~d~~~ei~eglr~~a~kf---- 123 (324)
T COG2144 56 LLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMGGEPVGAVDAI----SAKS----EDQAREILEGLRKGARKF---- 123 (324)
T ss_pred EEEecCCccccccccCchhhhceeEEEeehhhhhhCCcceEEEEee----ecCC----HHHHHHHHHHHHHHHHhc----
Confidence 4444 46788899999999999999999999999999999988762 3321 356779999999999999
Q ss_pred CccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEE-EcCCCcCccchhHH
Q psy5568 537 RREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWI-DLSCGQHRVGGSAL 615 (685)
Q Consensus 537 ~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i-~lg~~~~~lGGS~l 615 (685)
||||+|||+.- + .-++.+.+++ +.+.+....+++.-+++| | .||++ |+. ++. .-+.
T Consensus 124 ------gvpivGGhthp-----d---~~y~vl~v~i-~gl~~~e~Ii~s~~Ak~G-D---~lI~~~d~~-g~~--~p~~- 180 (324)
T COG2144 124 ------GVPIVGGHTHP-----D---TPYCVLDVVI-GGLIAEEPIITSGTAKPG-D---LLIFVGDLD-GKP--YPNF- 180 (324)
T ss_pred ------CCceecCccCC-----C---CCCceeeeEE-ecccccccccccCCCCcC-C---EEEEEeccC-CCc--CCCC-
Confidence 99999997741 1 1134444444 444455677778888999 6 56655 321 111 0000
Q ss_pred HHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeE
Q psy5568 616 SQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKG 678 (685)
Q Consensus 616 a~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~ 678 (685)
- +....-.....+.+++.++.++++++ |+.|++|+|.||++.||++|+.++++|+.
T Consensus 181 ----P-~~wDttt~ka~~~~~~~~e~l~e~a~--l~~AgKDvS~gG~iGtl~mlle~S~~ga~ 236 (324)
T COG2144 181 ----P-LNWDTTTMKAKEKFRAQLELLREGAK--LVKAGKDVSNGGLLGTLLMLLEKSRVGAG 236 (324)
T ss_pred ----C-ccccceeeccHHHHHHHHHHHHHHHH--HHhhcccccCccHHHHHHHHHHhhccCce
Confidence 0 00111223356788899999999988 99999999999999999999999976653
No 37
>PRK00943 selenophosphate synthetase; Provisional
Probab=99.55 E-value=6.7e-14 Score=151.82 Aligned_cols=185 Identities=16% Similarity=0.093 Sum_probs=126.6
Q ss_pred eEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCC
Q psy5568 458 IATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTR 537 (685)
Q Consensus 458 ~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~ 537 (685)
++++++.-.+ ...|||.-++.||+.+++||+++|++|+..+. .+++|.... ....+.+.+++|.++|+++
T Consensus 63 lv~t~D~~~p-~~~~p~~~G~~Av~~~~sDiaAmGa~P~~~l~---~l~lp~~~~-~~~~l~~i~~Gi~~~~~~~----- 132 (347)
T PRK00943 63 IISTTDFFMP-IVDDPFDFGRIAATNAISDIYAMGGKPIMAIA---ILGWPINKL-PPEVAREVLEGGRAACRQA----- 132 (347)
T ss_pred EEEEcccCCC-CCCCHHHHHHHHHHHHhhHhhccCccHHhHhh---eeecCcccC-cHHHHHHHHHHHHHHHHHc-----
Confidence 5666665421 34689999999999999999999999987554 356674311 2357999999999999999
Q ss_pred ccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHH
Q psy5568 538 REWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQ 617 (685)
Q Consensus 538 ~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~ 617 (685)
|++++||++.-. + .|.+.++++|.++. .+.++..-.++| | +|++ .. .+|.+.+..
T Consensus 133 -----gv~lvGGdT~~~--------~-~~~i~~t~~G~~~~-~~~l~~~~ak~G-D----~Iiv--tg---~iG~~~~~~ 187 (347)
T PRK00943 133 -----GIPLAGGHSIDA--------P-EPIFGLAVTGVVPP-ERVKRNATAQAG-D----KLFL--TK---PLGIGILTT 187 (347)
T ss_pred -----CCceecccccCC--------C-CceEEEEEEEEEcC-CceeeCCCCCCC-C----EEEE--eC---CccHHHHHH
Confidence 999999998511 1 35788899999864 456777767899 6 5555 22 344443322
Q ss_pred HhhhhcCCCCCcCCHHHHHHHHHHH----HHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 618 VLAEVRGPSPDVEDAAALVRAFNVT----QRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 618 ~~~~~g~~~P~v~d~~~~k~~~~~v----~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
... .+... .++.+..++.+..+ ..+.+...|+|+||+|+|||+.+|+|||.++++|++|+
T Consensus 188 ~~~--~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~v~a~~DiT~gGL~~~L~ela~~s~~g~~Id 251 (347)
T PRK00943 188 AEK--KSKLK-PEHYGLAIEAMCQLNRPGADFAKLPGVHAMTDVTGFGLLGHLLEMCQGAGLTARVD 251 (347)
T ss_pred HHH--hcCCC-HHHHHHHHHHHHHhhhHHHHHhccCCCeEEEecCCchHHHHHHHHHHhcCCeEEEe
Confidence 211 11111 11122222222222 22333457899999999999999999999999999886
No 38
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=99.55 E-value=2e-13 Score=148.02 Aligned_cols=189 Identities=16% Similarity=0.143 Sum_probs=127.2
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
..++++++..++ ...|||..++.||+.+++||+++|++|+..+.+++ + .|.+. ....+.+.++++.++|+++
T Consensus 62 ~~lv~ttD~~~p-~~~~p~~~G~~av~~~lsDiaamGa~P~~~l~~~~-~-~~~~~--~~~~l~~i~~Gi~~~~~~~--- 133 (347)
T TIGR00476 62 LSLVQTTDYITP-IVDDPYMMGRIAAANALSDIYAMGGTPIDAMLILL-G-VSNKL--TIEVMREVIQGFKDACREA--- 133 (347)
T ss_pred eEEEEEeccCCC-CccCHHHHHHHHHHHHHHhhhhcCchHHHHHhhcc-C-CCCCC--CHHHHHHHHHHHHHHHHHc---
Confidence 347788887653 45699999999999999999999999987654321 1 13232 2456899999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|++++||++... + -|.+.++++|.++. .+.+++.-.++| | +|++ .. .+|.+.+
T Consensus 134 -------g~~lvGGdT~~~--------~-~~~i~~t~~G~~~~-~~~i~~~~ak~G-D----~Iil--tg---~lG~~~~ 186 (347)
T TIGR00476 134 -------GTSLTGGHTILN--------P-WPVFGGAVTGVCPE-EEVITPSGAQVG-D----VLIL--TK---PLGTQVA 186 (347)
T ss_pred -------CCCeEeeeeecC--------C-cCEEEEEEEEEECc-cceecCCCCCCC-C----EEEE--EC---CccHHHH
Confidence 999999998631 1 25678889998854 567788777899 6 5554 11 3454432
Q ss_pred HHHhhhh---cC-CCCCcCCHH-HHHHHHH-------HHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQVLAEV---RG-PSPDVEDAA-ALVRAFN-------VTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~~~~~---g~-~~P~v~d~~-~~k~~~~-------~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
...+..+ .. ...+- +.. ......+ ....+..+..++||||+|+|||+..|.|||.++++|++|+
T Consensus 187 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiT~gGL~~~L~~ia~~sg~g~~I~ 262 (347)
T TIGR00476 187 VAVHKWLDIPKDLSITKE-EVELAINEAIENMARLNRKAAGLMHTFNAHAATDITGFGILGHAQNMAKNSNVEARIV 262 (347)
T ss_pred HHHHHHhhcccccccCcH-HHHHHHHHHHHHHhHHHHHHHHHHhhCCceEEEeccCccHHHHHHHHHhcCCCeEEEE
Confidence 2111111 00 01110 000 0111111 1112333456999999999999999999999999999986
No 39
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=99.54 E-value=2e-14 Score=165.59 Aligned_cols=203 Identities=13% Similarity=0.139 Sum_probs=172.3
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
..+++.+-.+..-++++||.||+..|.-.+|++.++|+.|++-++. +-|+.|.. |.-..-+.+++.|++++-..+
T Consensus 95 ~~v~fKvESHNHPSaIePy~GAATGvGGiIRDv~smGArPiA~l~~-l~fG~~~~-~~~~~i~~gvv~Gia~YGN~i--- 169 (743)
T COG0046 95 WAVVFKVESHNHPSAIEPYQGAATGVGGIIRDVLSMGARPIALLDS-LRFGIPDI-EKTRYIMKGVVAGIAAYGNEI--- 169 (743)
T ss_pred EEEEEEeccCCCCCccCCCCCcccccCceeecccccCceeeeeecc-cccCCCCC-chhhhHHhccccchhhcCccc---
Confidence 5678999999999999999999999999999999999999998885 78886533 444455778999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|.++|-+.++..+.+ .|-+.+.++|.++. .+++...-+.+| + .|||++-..+++.+||..+
T Consensus 170 -------GvPtv~Ge~~fd~~y~~-----npLvna~~vG~i~~-~~i~~~~a~~~G-~---~li~~Gg~TgrDGigGat~ 232 (743)
T COG0046 170 -------GVPTVGGEFRFDESYVG-----NPLVNAGCVGLIRK-EHIVKGEAIGPG-D---KLILLGGKTGRDGIGGATF 232 (743)
T ss_pred -------cccccceEEEEccccCC-----CceEEEEEeeecch-hheeeccCCCCC-C---EEEEEcCCccccccCchhh
Confidence 99999999998776654 47888899999974 556665657889 4 8888865567899999988
Q ss_pred HHH-hhh----hcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQV-LAE----VRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~-~~~----~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+.. +++ .....-++.||..+|++++++.++++.|+|.++||++.|||..|+.||+..++.|++++
T Consensus 233 aS~~~~~~~~e~dr~aVQvGdPf~Ek~l~ea~le~~~~~~I~~i~DlGAgGLs~A~~Ela~~gg~G~~i~ 302 (743)
T COG0046 233 ASMELGEESEEEDRPSVQVGDPFMEKRLQEAILECVQTGLIKGIQDLGAGGLSCAISELAAKGGLGAEID 302 (743)
T ss_pred hhhhhCcchhhhcCCccccCChHHHHHHHHHHHHHHhcCCeEEEeccCCchhhhhHHHHHhccCCeEEEE
Confidence 774 441 22344568899999999999999999999999999999999999999999999999875
No 40
>PRK14105 selenophosphate synthetase; Provisional
Probab=99.45 E-value=3.1e-12 Score=138.71 Aligned_cols=188 Identities=14% Similarity=0.081 Sum_probs=120.5
Q ss_pred eEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCc-cccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCC
Q psy5568 458 IATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKIS-DLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNT 536 (685)
Q Consensus 458 ~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~-pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~ 536 (685)
++++++.-++ ...|||.-++.||+.+++||+++|+. |+..+. ..+.|++.+ ...|.+.++++.++|+++
T Consensus 60 lv~t~D~f~~-~~~~p~~~G~~av~~nlSDiaAmGa~~p~~~~~---~l~lP~~~~--~~~l~~i~~Gi~~~~~~~---- 129 (345)
T PRK14105 60 IVKTVDVFTP-IVDDPYIQGKIAACNSTSDVYAMGLSEIIGVLV---ILGIPPELP--IEVAKEMLQGFQDFCREN---- 129 (345)
T ss_pred EEEEecCCCC-CcCCHHHHHHHHHHHHHHHHHHcCCccHHHHHh---hhcCCCCCC--HHHHHHHHHHHHHHHHHh----
Confidence 5666665333 24689999999999999999999997 555332 334676543 457889999999999999
Q ss_pred CccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchh---
Q psy5568 537 RREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGS--- 613 (685)
Q Consensus 537 ~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS--- 613 (685)
|++++||++... + -|.+.++++|.++ ..+.++..-.++| | +|++ .. .+|.+
T Consensus 130 ------gv~lvGGdT~~~--------~-~~~l~~svtg~g~-~~~~i~r~ga~~G-D----~I~v--Tg---~lG~~~~~ 183 (345)
T PRK14105 130 ------DTTIIGGHTILN--------P-WPLIGGAVTGVGK-EEDILTKAGAKEG-D----VLIL--TK---PLGTQSAM 183 (345)
T ss_pred ------CCEEEeeeeccC--------C-CCEEEEEEEEEEc-ccceeeCCCCCCC-C----EEEE--eC---CChHHHHH
Confidence 999999998631 1 1445445555553 3456777767899 6 5555 22 24432
Q ss_pred HHHHHhhhhcC--CCCCcCCHHHHHHHH------------HHHHHHHH---cCCcEEEEcCCcchHHHHHHHHHhcCCCC
Q psy5568 614 ALSQVLAEVRG--PSPDVEDAAALVRAF------------NVTQRLIQ---DGQVLSGHDISDGGLLICLLEMDVGANSP 676 (685)
Q Consensus 614 ~la~~~~~~g~--~~P~v~d~~~~k~~~------------~~v~~li~---~glv~A~HDvSdGGL~~aLaEMa~ag~~G 676 (685)
.+.....+... ..+. +..+...+.+ ..++++.. ++.++|+||+|+|||+..|.|||-++++|
T Consensus 184 ~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~DiSdgGL~~~L~ela~aS~v~ 262 (345)
T PRK14105 184 ALSRVPEEFEDLIDITK-EEKEYIINKAIELMTTSNRYALLALREAEEEVGEKIANAMTDVTGFGILGHSQEMAEQSNVE 262 (345)
T ss_pred HHHhcchhhhhhccCCH-HHHHHHHHHHHHHHHhhhHHHHHHHHHhhhccccCCeeEEEcCCCchHHHHHHHHHhhCCCe
Confidence 22222211111 1111 0111111111 11222221 23589999999999999999999999999
Q ss_pred eEEEec
Q psy5568 677 KGWVKL 682 (685)
Q Consensus 677 ~~I~~~ 682 (685)
++|+++
T Consensus 263 i~i~~i 268 (345)
T PRK14105 263 IEISTL 268 (345)
T ss_pred EEEEcc
Confidence 998754
No 41
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.9e-13 Score=141.00 Aligned_cols=175 Identities=14% Similarity=0.112 Sum_probs=123.8
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeec
Q psy5568 476 GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKH 555 (685)
Q Consensus 476 ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~ 555 (685)
-|++||+-++++|+.+|++|.- +.|.+| -|++.| ...|.+.++.|.+.|+++ ||+|++|++-.+.
T Consensus 70 iG~lAV~gt~NDlav~GA~P~~-l~~~li--l~eg~~--~e~l~~i~~si~e~a~~~----------Gv~IvtGdTkV~~ 134 (339)
T COG0309 70 IGKLAVHGTANDVAVSGAKPRY-LSVGLI--LPEGLP--IEDLERILKSIDEEAEEA----------GVSIVTGDTKVVP 134 (339)
T ss_pred eEEEEEEEehhhhhhcCCCcee-eeEeEe--cCCCCC--HHHHHHHHHHHHHHHHHc----------CCeEEccCceeec
Confidence 4889999999999999999865 444444 476654 467999999999999999 9999999998764
Q ss_pred cccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHHHhhh-hcCCCCCcCCHHH
Q psy5568 556 ELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAE-VRGPSPDVEDAAA 634 (685)
Q Consensus 556 ~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~~~~~-~g~~~P~v~d~~~ 634 (685)
. .+-|+-...+++|.+.. ...+++.-.+|| | .+| + .++...-|.|.++..+++ +....-. |...
T Consensus 135 ~-----~~~~~vi~tt~iG~~~~-~~~v~~~~~~~G-D---~vI-~--tg~~g~hga~ila~~~~~~l~~~l~s--D~~~ 199 (339)
T COG0309 135 G-----GKDPIVINTTGIGIIDK-EILVSPSGARPG-D---AVI-V--TGTIGIHGASILAHRFGEELETELGS--DCAP 199 (339)
T ss_pred C-----CCCCcEEEeeeEEeecC-CcccccCCCCCC-C---EEE-E--cCChhHHHHHHHHHhcchhhccchhh--hHHH
Confidence 3 23355666799999865 455788877899 6 444 4 456566778888887754 2211111 1122
Q ss_pred HHHHHHH-H---HHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEEe
Q psy5568 635 LVRAFNV-T---QRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWVK 681 (685)
Q Consensus 635 ~k~~~~~-v---~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~~ 681 (685)
..+.+.. + .+.... .|.||||.++|||+.+|.|||.+++.|+.|.+
T Consensus 200 ~~~~~~~~l~~~~~~~~~-~vtAMhDaTrGGla~aLnEmA~aSgvgi~I~e 249 (339)
T COG0309 200 LAKLVKALLSVVGEALAA-AVTAMHDATRGGLAGALNEMAEASGVGISIEE 249 (339)
T ss_pred HHHHHHHHhhcchhhhhh-hhhhccCCchhHHHHHHHHHHHHcCCeEEEee
Confidence 2222221 1 111111 17789999999999999999999999998864
No 42
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.32 E-value=5.5e-12 Score=153.67 Aligned_cols=195 Identities=13% Similarity=0.040 Sum_probs=147.3
Q ss_pred CceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCcccccccccccc---ccCC---------CCCchHHHHHHHH
Q psy5568 455 DRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNW---MWAA---------KLPGEGAALFDAC 522 (685)
Q Consensus 455 D~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~---~~p~---------~~p~~~~~L~~av 522 (685)
+..+++.+-.+..-+.++||-||...|.-++|++.+.++. +-+++.| +.|. ++|. ..-+.+++
T Consensus 311 ~~~v~fK~ETHNHPSaIePf~GAATGvGG~IRD~lsg~a~----~~~~Lr~~g~g~p~~~~~~~~~gklp~-r~I~~gv~ 385 (1239)
T TIGR01857 311 PWLLMFKNETHNHPTEIEPFGGAATCIGGAIRDPLSGRSY----VYQAMRVTGAGDPTVPISETLKGKLPQ-RKITTTAA 385 (1239)
T ss_pred ceEEEEEEccCCCCCccCCCCcccccCCchhcccccccee----eecccccCCCCCCCccccccccCCCch-hhhhhhcc
Confidence 4778999999999999999999999999999999887654 4444555 4442 2221 24467899
Q ss_pred HHHHHHhhhhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEE
Q psy5568 523 QAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWID 602 (685)
Q Consensus 523 ~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~ 602 (685)
.|++++-.++ |+|.++|.+-+...|.+ +|.+...++|.++. .+++... ..+| | .||+++
T Consensus 386 ~G~s~YGN~~----------GvpTg~g~~~f~~~Y~~-----~~lv~~~~vG~~~~-~~v~k~~-~~~G-d---~iv~~G 444 (1239)
T TIGR01857 386 HGYSSYGNQI----------GLATGQVSEIYHPGYVA-----KRMEVGAVVAATPK-ENVVREK-PEPG-D---VIILLG 444 (1239)
T ss_pred cceeccCccc----------CCceeeEEEEEecCCCC-----CceEEEEEEEeecH-HHhccCC-CCCC-C---EEEEEC
Confidence 9999999999 99999988766544443 56777777798874 3333333 4678 4 666663
Q ss_pred cCCCcCccchhHHHHH-hhhh-----cCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCC
Q psy5568 603 LSCGQHRVGGSALSQV-LAEV-----RGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSP 676 (685)
Q Consensus 603 lg~~~~~lGGS~la~~-~~~~-----g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G 676 (685)
-..+++.+||+.++.. +++- +..++ +.||+.+|++++++.+++++|+|.|+||+|+|||++||+|||+ |
T Consensus 445 g~tGRdGigGat~SS~~~~~~s~~~~~~aVQ-~Gdp~~Ekkl~e~i~~a~~~glI~s~hD~gaGGLavAlaEma~----G 519 (1239)
T TIGR01857 445 GKTGRDGIGGATGSSKEHTVESLELCGAEVQ-KGNAPEERKIQRLFRNGNVTRLIKKCNDFGAGGVSVAIGELAD----G 519 (1239)
T ss_pred CCCCcCcccchhhhhhhccccccccccCccC-cCCHHHHHHHHHHHHHHHhCCCEEEEeecchhHHHHHHHHHhC----C
Confidence 2235899999997663 4321 11233 4599999999999999999999999999999999999999997 7
Q ss_pred eEEE
Q psy5568 677 KGWV 680 (685)
Q Consensus 677 ~~I~ 680 (685)
++|+
T Consensus 520 ~~Id 523 (1239)
T TIGR01857 520 LEID 523 (1239)
T ss_pred EEEE
Confidence 7664
No 43
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=99.21 E-value=3.7e-10 Score=123.75 Aligned_cols=183 Identities=14% Similarity=0.041 Sum_probs=124.6
Q ss_pred cCHHH-HHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeee
Q psy5568 471 VDPKR-GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGG 549 (685)
Q Consensus 471 ~DP~~-ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgG 549 (685)
.+|+. -++.+|+-++++|+++|++|+..++. + .|.+. ....+.+.+++|.++|+++ |++++||
T Consensus 116 ~~~~~~iG~~aVa~nvnDIaamGA~P~~~l~~-l---~~~~l--~~~~l~~i~~Gi~~a~~~~----------Gv~lVGG 179 (379)
T PLN02557 116 TGIHDTIGIDLVAMSVNDIVTSGAKPLFFLDY-F---ATSHL--DVDLAEKVIKGIVDGCQQS----------DCALLGG 179 (379)
T ss_pred cCcHhhHHHHHHHhHHHHHHHcCCChHHhhee-c---ccCCC--CHHHHHHHHHHHHHHHHHh----------CCEEEee
Confidence 56775 69999999999999999999886643 2 25453 2356889999999999999 9999999
Q ss_pred eceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCC-CcCccchhHHHHHhhhh----cC
Q psy5568 550 IGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSC-GQHRVGGSALSQVLAEV----RG 624 (685)
Q Consensus 550 kdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~-~~~~lGGS~la~~~~~~----g~ 624 (685)
++........ .-.+.+.++++|.++. .+.++..-.+|| | .|+.+ +. +-+.-|=|...+++.+. ..
T Consensus 180 dT~~~p~~~~---~~~~~i~~t~iG~v~~-~~~i~~~~akpG-D---~Iigl--~ssGiHsng~sl~r~~l~~~~~~~~~ 249 (379)
T PLN02557 180 ETAEMPGFYA---EGEYDLSGFAVGSVKK-DAVIDGKNIVAG-D---VLIGL--PSSGVHSNGFSLVRRVLAKSGLSLKD 249 (379)
T ss_pred cceEccCccc---CCceeEEEEEEEEEec-ccccccccCCCC-C---EEEEe--cccccccchhhhhHHHHHhccccccc
Confidence 9983222110 1135678899999864 455666667899 6 44433 32 22222223222233221 11
Q ss_pred CCCC----cCC--HHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 625 PSPD----VED--AAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 625 ~~P~----v~d--~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
..|. +.+ ++-.+-..+.+.++++++.|.++||++.|||+..|.||+- +++|++|+
T Consensus 250 ~~~~~~~~l~e~ll~pt~iyv~~vl~l~~~~~V~am~diTgGGl~~~L~e~~~-~g~g~~Id 310 (379)
T PLN02557 250 QLPGASVTIGEALMAPTVIYVKQVLDIISKGGVKGIAHITGGGFTDNIPRVFP-KGLGAKIR 310 (379)
T ss_pred cccccCccHHHHhhcchHHHHHHHHHHhhcCCeEEEEcCCcchHhhhhHHHhc-CCeeEEEe
Confidence 2231 111 1112446677888888889999999999999999999995 78999887
No 44
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=98.95 E-value=7e-09 Score=110.97 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=119.4
Q ss_pred ecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeee
Q psy5568 470 LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGG 549 (685)
Q Consensus 470 ~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgG 549 (685)
...|+..|+.||+-++.+|+|+|+.|..-+ + ..++|+.. ..+.+.+.++||.+.|+.+ +++++||
T Consensus 56 ~~~p~d~G~Ka~a~NlSDlAAMGa~P~~~~-l--sl~lP~~~--d~~~~~~~~~Gi~e~~~~y----------~~~lIGG 120 (317)
T COG0611 56 DMTPEDLGWKALAVNLSDLAAMGARPKAFL-L--SLGLPPDL--DEEWLEALADGIFEAAKKY----------GVKLIGG 120 (317)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCCchhhe-e--eeeCCCCC--CHHHHHHHHHHHHHHHHHc----------CCeEecc
Confidence 345999999999999999999999997743 2 34567554 2467889999999999999 9999999
Q ss_pred eceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHH--HhhhhcCCCC
Q psy5568 550 IGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQ--VLAEVRGPSP 627 (685)
Q Consensus 550 kdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~--~~~~~g~~~P 627 (685)
-+. + . +-+++++++|.++..+ .++..-.+|| | +|+| . ..+|-|...- +.+ ...+
T Consensus 121 Dt~-------~--~-~l~is~t~iG~~~~~~-~l~R~gAkpG-D----~v~v--t---G~lG~saagl~ll~~---~~~~ 176 (317)
T COG0611 121 DTN-------R--G-PLSISVTAIGVLPKGR-ALLRSGAKPG-D----LVAV--T---GTLGRSAAGLELLLN---VLGP 176 (317)
T ss_pred ccC-------C--C-ceEEEEEEEEecCCCc-hhhccCCCCC-C----EEEE--c---CCCchhHHHHHHHhc---ccCc
Confidence 764 1 2 5688999999998744 6777778899 5 6776 2 3466665322 222 1111
Q ss_pred CcCCHHHHHHHHHH------HHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 628 DVEDAAALVRAFNV------TQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 628 ~v~d~~~~k~~~~~------v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+. .....+++++- -+.|.+ ...|+-|+|| ||++.|.+++-+++||++|+
T Consensus 177 ~~-~~~l~~r~~~P~Prv~~g~~l~~--~a~aa~DiSD-GL~~dL~~i~~aS~vg~~I~ 231 (317)
T COG0611 177 ED-EEELIERHLRPTPRVELGLALAK--LASAAMDISD-GLAADLGHIARASGVGIVID 231 (317)
T ss_pred ch-hHHHHHHhcCCCCChhHHHHHHH--HHHHheecch-hHHHHHHHHHHHcCCeEEEE
Confidence 11 12222222211 112222 5679999999 69999999999999999986
No 45
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=98.92 E-value=1.5e-09 Score=103.19 Aligned_cols=81 Identities=26% Similarity=0.291 Sum_probs=63.6
Q ss_pred EEEEEcCCCcCccchhHH-HHHhhhhcCCCC-CcCCHHHHHHHHHHHHHHHHc-CCcEEEEcCCcchHHHHHHHHHhcCC
Q psy5568 598 LLWIDLSCGQHRVGGSAL-SQVLAEVRGPSP-DVEDAAALVRAFNVTQRLIQD-GQVLSGHDISDGGLLICLLEMDVGAN 674 (685)
Q Consensus 598 lv~i~lg~~~~~lGGS~l-a~~~~~~g~~~P-~v~d~~~~k~~~~~v~~li~~-glv~A~HDvSdGGL~~aLaEMa~ag~ 674 (685)
+|++ +|. ..++|+.+ ++.+.......| ...++...++.++.++.++.. ++|+|+||+|||||+.+|.|||.+++
T Consensus 5 ~i~~-~g~--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a~~DvSdGGL~~~l~em~~~s~ 81 (153)
T PF02769_consen 5 LIIV-TGS--LGLGGSGLLAARKGGESGGLPDPLVDAELEPPLLYAVRALAALKGLIHAAHDVSDGGLAGALAEMAEASG 81 (153)
T ss_dssp EEEE-ECS--SSHCHHHHHHHHHTHHHTTHHHCHHHHHHHHHHHHHHHHHHHHHTTEEEEEEESTTHHHHHHHHHHHCTT
T ss_pred EEEE-ECC--CcHHHHHHHHHHhCccccccchhhhhHHhhHHHHHHHHHhhhhhcceEEEEecCCchHHHHHHHHHHhCC
Confidence 5555 343 67888884 444444443343 233788888999999999987 99999999999999999999999999
Q ss_pred CCeEEEe
Q psy5568 675 SPKGWVK 681 (685)
Q Consensus 675 ~G~~I~~ 681 (685)
+|++|+.
T Consensus 82 ~g~~i~~ 88 (153)
T PF02769_consen 82 VGAEIDL 88 (153)
T ss_dssp EEEEEEG
T ss_pred cceEEcc
Confidence 9999874
No 46
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=98.78 E-value=1.1e-08 Score=90.82 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=56.8
Q ss_pred ecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeee
Q psy5568 470 LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGG 549 (685)
Q Consensus 470 ~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgG 549 (685)
..|||.+|+.||+++++||+++|++|+..+.+ ++| |.. .....|.++++++.++|+++ |+|++||
T Consensus 30 ~~~p~~~g~~av~~~~sDl~a~Ga~P~~~~~~-l~~--~~~--~~~~~l~~~~~Gi~~~~~~~----------g~~ivGG 94 (96)
T PF00586_consen 30 FMDPYDGGWKAVAEALSDLAAMGAKPLAILDS-LGL--PNP--ESPEELKEIVKGIAEACREF----------GIPIVGG 94 (96)
T ss_dssp TCTHHHHHHHHHHHHHHHHHTTTEEEEEEEEE-EEE--STT--SBHHHHHHHHHHHHHHHHHH----------T-EEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCCeeeEEEEE-EEc--CCC--CCHHHHHHHHHHHHHHHHHh----------CCcEeCc
Confidence 67999999999999999999999999975554 555 432 24567999999999999999 9999999
Q ss_pred ec
Q psy5568 550 IG 551 (685)
Q Consensus 550 kd 551 (685)
|+
T Consensus 95 ~T 96 (96)
T PF00586_consen 95 DT 96 (96)
T ss_dssp EE
T ss_pred CC
Confidence 86
No 47
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=98.57 E-value=9e-09 Score=108.23 Aligned_cols=78 Identities=33% Similarity=0.498 Sum_probs=66.7
Q ss_pred eeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHH
Q psy5568 356 LDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNI 435 (685)
Q Consensus 356 ~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i 435 (685)
+.++||+|+||||+.++||.||.+++.+.+||+.+||++++|++.++.|++++.+ | ...++
T Consensus 1 ~~~a~~~~~~~~~~~~~p~~g~~~av~~~~~diaa~G~~a~P~~~~~~l~~~~~~------p-------------~~~~~ 61 (272)
T cd02193 1 YGEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGIDAKPIALSANWMASAGH------P-------------GEDAI 61 (272)
T ss_pred CccEEeecCCCCccccChHHHHHHHHHHHHhhhhhcCCCccceEEeeecccCCCC------C-------------CHHHH
Confidence 4689999999999999999999999999999999998889999999999987421 1 13456
Q ss_pred HHHhcccccCCCCC--CCC
Q psy5568 436 LIEASNGASDYGNI--EPC 452 (685)
Q Consensus 436 ~~~~~~G~s~YgN~--~Pc 452 (685)
+.++..|++++.++ +|.
T Consensus 62 l~~~~~gi~~a~~~~g~pi 80 (272)
T cd02193 62 LYDAVKGVAELCNQLGLPI 80 (272)
T ss_pred HHHHHHHHHHHhHhhCCcc
Confidence 78889999998888 663
No 48
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=97.63 E-value=0.00041 Score=74.76 Aligned_cols=176 Identities=15% Similarity=0.108 Sum_probs=112.3
Q ss_pred HHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeece-eeccc
Q psy5568 479 MAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGT-MKHEL 557 (685)
Q Consensus 479 ~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdS-m~~~~ 557 (685)
=.|+-++++|++.|++|+.-++-.+ ...++ .....+.++|+++-|++- |+.++||-+. |-.-+
T Consensus 83 D~VAM~VNDlv~~GAePl~flDY~A-----~gk~~-~~~~~~iv~GiaeGc~~a----------g~aLvGGETAeMPg~y 146 (345)
T COG0150 83 DLVAMCVNDLVVQGAEPLFFLDYLA-----TGKLD-PEVAAQIVKGIAEGCKQA----------GCALVGGETAEMPGMY 146 (345)
T ss_pred chheeecchhhhcCcchHHHHhhhh-----cCCCC-HHHHHHHHHHHHHHHHHh----------CCEEeccccccCCCcc
Confidence 3566679999999999999887632 22232 355688999999999999 9999999998 32222
Q ss_pred cCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHHHhhhhcC----CCCCcCCHH
Q psy5568 558 KEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVRG----PSPDVEDAA 633 (685)
Q Consensus 558 ~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~~~~~~g~----~~P~v~d~~ 633 (685)
.+... =+.-+++|.|+. +++++..--++| | .||-+ -+.+-+.=|=|...+++...+. ..|.... +
T Consensus 147 ~~g~y----DlaG~~vGvvek-~~ii~g~~i~~G-D---viigl-~SSG~HSNGySLvRKi~~~~~~~~~~~~~~~~g-~ 215 (345)
T COG0150 147 RGGDY----DLAGFAVGVVEK-DEIIDGSKVKEG-D---VIIGL-ASSGLHSNGYSLVRKIIEESGLDYDDELPEELG-K 215 (345)
T ss_pred cCCce----eeeeeEEEEEEc-cccccccccCCC-C---EEEEe-cCCCcCCCchHHHHHHHHhcCccccccCccccc-c
Confidence 21112 245678898874 556777656788 6 55555 2344444444555555433211 1222100 0
Q ss_pred HHH-------HHH-HHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEEec
Q psy5568 634 ALV-------RAF-NVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWVKL 682 (685)
Q Consensus 634 ~~k-------~~~-~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~~~ 682 (685)
.+. ++| +-+++|++++.|.++-.|+-||+.-.|=.| +..++++.|++.
T Consensus 216 ~l~e~LL~PTrIYvk~vL~l~~~~~vkg~AHITGGG~~eNl~Rv-~p~~l~a~id~~ 271 (345)
T COG0150 216 TLGEELLEPTRIYVKPVLALIKEGDVKGMAHITGGGFVENLPRV-LPEGLGAVIDKP 271 (345)
T ss_pred CHHHHhcCCceeehHHHHHHHhcCCcceEEEecCCChhhhChhh-cCccceEEEcCC
Confidence 111 111 226678989999999999999998777655 445678877653
No 49
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.00029 Score=75.21 Aligned_cols=187 Identities=17% Similarity=0.148 Sum_probs=117.2
Q ss_pred eEEecc-cCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCC
Q psy5568 458 IATSIG-EQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNT 536 (685)
Q Consensus 458 ~A~s~G-~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~ 536 (685)
+.++++ .+.+++ -=|+.++.++-.-|+|++..+|+.|++.+.- +. .+. .+....|++-..|+...|++.
T Consensus 124 ivvaiDGiHSRLS-efPFLaGFhvtRAalRDv~vmGa~p~alisD-iH--laD--DgDVgklfDf~AGvtaVsea~---- 193 (449)
T COG1973 124 IVVAIDGIHSRLS-EFPFLAGFHVTRAALRDVYVMGARPVALISD-IH--LAD--DGDVGKLFDFTAGVTAVSEAV---- 193 (449)
T ss_pred EEEEecchhhhhh-cCcchhhhHHHHHHHHHHHHcCcccceeeee-ee--ecc--CcchhhhhhhhhhhhHHHHHh----
Confidence 345543 455554 3599999999999999999999999664321 11 121 234678999999999999999
Q ss_pred CccccCCeeeeeeeceeeccccCC-cccCCcceEEEEEeeeCCCCcccCCCC-cCCCCCCcceEEEEEcCCCcCccchhH
Q psy5568 537 RREWIKPIMFSGGIGTMKHELKEK-ASPNVGSLVISTYAPCPDIRQVVTPDI-KSPRLGYSSSLLWIDLSCGQHRVGGSA 614 (685)
Q Consensus 537 ~~~~~~gipivgGkdSm~~~~~~~-~v~ippTlvisa~g~v~d~~~~vtp~~-k~~G~d~~s~lv~i~lg~~~~~lGGS~ 614 (685)
|||+++|.+--- .|. .+--..+--|+++|... ..+||.- .+|| | +|++-=|.+ ||.+
T Consensus 194 ------~vPl~aGSTLRi---GGDmVlGdRl~~~Vg~iGi~k---~~~t~Rr~~~~G-d----~IlmTEGaG----GGTi 252 (449)
T COG1973 194 ------GVPLLAGSTLRI---GGDMVLGDRLVGAVGAIGISK---SELTPRRRAEPG-D----VILMTEGAG----GGTI 252 (449)
T ss_pred ------CCceecccceEE---cCeeEeechhhcccceeeeec---CCCChhccCCCC-C----EEEEecCCC----Ccee
Confidence 999999976511 121 00111233345555543 3345532 3678 5 555522222 4443
Q ss_pred HH-HH-hhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCC---cEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 615 LS-QV-LAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQ---VLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 615 la-~~-~~~~g~~~P~v~d~~~~k~~~~~v~~li~~gl---v~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
-. .+ || .+++-.-....++.++.+.++++|| |.|+.||+.|||=.-..|.+--+++++-.+
T Consensus 253 ~TTAiY~G-----m~DVv~ETlnv~fi~a~eai~~s~L~~~vhsMTDVTNGGiRgDA~EISkta~v~lvfD 318 (449)
T COG1973 253 ATTAIYHG-----MHDVVEETLNVDFIRACEAIVRSGLLSDVHSMTDVTNGGIRGDALEISKTAGVSLVFD 318 (449)
T ss_pred ehhhhhcc-----cHHHHHHhcChHHHHHHHHHHHhhhhhhhhhhhhccCCcccccHHHhhhhcCeeEEEc
Confidence 21 12 22 2222111223456667777777775 779999999999999999988888777654
No 50
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=97.21 E-value=2e-05 Score=69.98 Aligned_cols=66 Identities=15% Similarity=0.111 Sum_probs=57.3
Q ss_pred ccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeeccc
Q psy5568 323 NDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTA 402 (685)
Q Consensus 323 ~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~ 402 (685)
+||++||+..+ .......+.++.+++|++.++||.++...+.+.+||+.++ ||+|++.+.
T Consensus 1 GdDaavi~~~~------------------~~~~~~~~d~~~~~~~~~~~~p~~~g~~av~~~~sDl~a~--Ga~P~~~~~ 60 (96)
T PF00586_consen 1 GDDAAVIRIPD------------------GKRLVVSTDGFGTSVHFAFMDPYDGGWKAVAEALSDLAAM--GAKPLAILD 60 (96)
T ss_dssp TSSSEEEEETS------------------TEEEEEEEEEEETHHHHHTCTHHHHHHHHHHHHHHHHHTT--TEEEEEEEE
T ss_pred CCceEEEEcCC------------------CCeEEEEEEeccCcccccccCHHHHHHHHHHHHHHHHHhc--CCeeeEEEE
Confidence 58999999531 1346778889999999999999999999999999999998 999999999
Q ss_pred ceEecc
Q psy5568 403 GYCVGN 408 (685)
Q Consensus 403 ~~~~g~ 408 (685)
.+.+++
T Consensus 61 ~l~~~~ 66 (96)
T PF00586_consen 61 SLGLPN 66 (96)
T ss_dssp EEEEST
T ss_pred EEEcCC
Confidence 999844
No 51
>COG0709 SelD Selenophosphate synthase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0025 Score=68.19 Aligned_cols=184 Identities=17% Similarity=0.119 Sum_probs=119.9
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
.++..+.+.--++ .-||+.=++.|-.-|+.++.++|++|+-.+.. .|| |.+.- ....+.+.+++=.+.|++-
T Consensus 61 ~~iIsT~df~mpi-vddp~dfG~IaAtNaIsDv~amgg~pi~AiAI-~g~--~~~~l-~~~i~~ei~~gg~~~~rea--- 132 (346)
T COG0709 61 HSIISTTDFFMPI-VDDPFDFGRIAATNAISDVFAMGGKPIMAIAI-LGF--PNDLL-DKEIAQEVIEGGRDACREA--- 132 (346)
T ss_pred cEEEEecceeeec-ccCcchhhhhhhcccccchhhcCCcchhhhhh-cCC--ccccc-CHHHHHHHHHhhHHHHHHh---
Confidence 5566666643333 34999999999999999999999999988887 455 43321 1234567777877999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
++++.|||.= +. .-++.... +.|.|. ..+....+-.++| + .+++ .+. +|--+|
T Consensus 133 -------~i~lagGhsI-----da-pEP~fGla---v~G~~~-~~k~~~n~~a~~G-~----~lil--TKP---lG~gil 185 (346)
T COG0709 133 -------GIALAGGHSI-----DA-PEPIFGLA---VTGIVP-TGKVKRNSTAKAG-C----KLIL--TKP---LGIGIL 185 (346)
T ss_pred -------CccccCCccc-----CC-CCccccee---eecccc-hhhhcccccccCC-c----EEEE--ecC---ccccee
Confidence 9999999973 11 11333444 445453 2344444445677 3 4444 222 333333
Q ss_pred HHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcC-------CcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDG-------QVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~g-------lv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
...+.+ +. + ..+......+.+.++.+.+ -|.|+-||+-=||+.-+.|||.++++++++-
T Consensus 186 ~ta~k~--~~---L-~~e~~~~ale~M~~lN~~~~~~~~~~gv~A~TDVTGfGLlghl~E~ae~s~v~~~lf 251 (346)
T COG0709 186 TTAEKK--GL---L-KEEHKGLALENMCTLNKIGAQFAPDFGVAAMTDVTGFGLLGHLKEMAEGAGVDARLF 251 (346)
T ss_pred hhhhhh--hc---c-CHHHHHHHHHHHhhhhHHHHHhCccCCcceeecccCchHHHHHHHHHhhcCCcEEEe
Confidence 333211 11 1 3455566666666655433 3899999999999999999999999999874
No 52
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=96.48 E-value=0.0013 Score=70.84 Aligned_cols=52 Identities=10% Similarity=0.079 Sum_probs=47.1
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWA 508 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p 508 (685)
.++++++..++..+..|||.+|+.+|+++++||+|+|+.|+..+.+ +++.+|
T Consensus 26 ~~~~~~~e~~~~~~~~~p~~~g~~~v~~~vsDiaamGa~P~~~~~~-l~~p~~ 77 (313)
T cd02203 26 WAVVFKVETHNHPSAIEPFGGAATGVGGIIRDILSMGARPIALLDG-LRFGDL 77 (313)
T ss_pred hEEEEEeccCCCCCCcCCcccHhhhhhhhhhcccccCCEEEEEeeE-EeecCC
Confidence 4789999999999999999999999999999999999999987776 677554
No 53
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=95.94 E-value=0.0013 Score=66.90 Aligned_cols=49 Identities=27% Similarity=0.516 Sum_probs=46.2
Q ss_pred EEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEecc
Q psy5568 358 IIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 358 i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~ 408 (685)
+++|+++|++++.++||.++.+.+...+||+.++ |++|++.++.+++.+
T Consensus 2 l~~~~D~~~~~~~~~p~~~g~~av~~~~sDl~a~--Ga~P~~~~~~l~~~~ 50 (222)
T cd00396 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAM--GARPIALLASLSLSN 50 (222)
T ss_pred eEEEECCCCCCcCCCCccHHHHHHHHhHHHHHhc--CCccHHHhhheccCC
Confidence 6899999999999999999999999999999998 899999999998753
No 54
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=95.70 E-value=0.0037 Score=67.27 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=55.7
Q ss_pred CCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeC-----CCCCCccccCCCCccccccceeeeec
Q psy5568 315 NQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAE-----THNFPTGVSPFSGATTGTGGRIRDVQ 389 (685)
Q Consensus 315 ~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~E-----THNhPsai~Pf~GAaTG~GG~iRD~~ 389 (685)
+++++.+.+|++++++..+ +..+++++. ||++|.. +||.++...+...+||+.
T Consensus 16 ~~~~~~g~gdDaavi~~~~---------------------~~~lvis~D~~~~~~~~~~~~-~p~~~G~~av~~~~sDia 73 (317)
T TIGR01379 16 DPDVALGIGDDAALVSAPE---------------------GRDLVLTTDTLVEGVHFPPDT-TPEDLGWKAVAVNLSDLA 73 (317)
T ss_pred CCCcccCCCCcEEEEecCC---------------------CCeEEEEeccccCCcCCCCCC-CHHHHHHHHHHHHHHHHH
Confidence 4677889999999998421 234556654 6999997 999999999999999999
Q ss_pred ccCCCCeeeecccceEe
Q psy5568 390 AVGRGGNCIAGTAGYCV 406 (685)
Q Consensus 390 ~~GrGa~pia~~~~~~~ 406 (685)
+| ||+|++-+..+++
T Consensus 74 a~--Ga~P~~~~~~~~~ 88 (317)
T TIGR01379 74 AM--GATPKWFLLSLGL 88 (317)
T ss_pred Hc--CCcccEEEEEEEc
Confidence 99 9999999876654
No 55
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=95.19 E-value=0.0067 Score=65.27 Aligned_cols=64 Identities=14% Similarity=0.139 Sum_probs=52.9
Q ss_pred eecccccceeeccccCCccccCCCCCCCCceecccceeEEEee-----CCCCCCccccCCCCccccccceeeeecccCCC
Q psy5568 320 IKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTA-----ETHNFPTGVSPFSGATTGTGGRIRDVQAVGRG 394 (685)
Q Consensus 320 ~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~-----ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrG 394 (685)
.+++|++++++... +..++++. ++|++|..++||.++...+...+||+.+| |
T Consensus 22 ~~~gdDaavi~~~~---------------------~~~lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~--G 78 (318)
T PRK05731 22 LGIGDDAALLGPPP---------------------GQRLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAM--G 78 (318)
T ss_pred CCCCCcEEEeccCC---------------------CCeEEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHc--C
Confidence 57789999998421 23455554 67999999999999999999999999998 9
Q ss_pred CeeeecccceEe
Q psy5568 395 GNCIAGTAGYCV 406 (685)
Q Consensus 395 a~pia~~~~~~~ 406 (685)
|+|++.+..+++
T Consensus 79 a~P~~~~~~l~~ 90 (318)
T PRK05731 79 ARPAAFLLALAL 90 (318)
T ss_pred CCcceEEEEEEc
Confidence 999999977764
No 56
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=94.89 E-value=0.036 Score=47.41 Aligned_cols=44 Identities=9% Similarity=0.079 Sum_probs=36.8
Q ss_pred cEEEEecCCCcCChhhhhHHHHHHHcCcch-----------------------hhhhhcccccceee
Q psy5568 164 NVIEVGPRLNFSTPFCSNVLSICQSIQLHS-----------------------CAESFYDRMTECVY 207 (685)
Q Consensus 164 ~~ieV~PR~G~~spwss~a~~i~~~~gl~~-----------------------~~~~L~d~mte~~~ 207 (685)
+.++|+||||+.||.+.++.+.++.+|++. +..+|+|+++|.+.
T Consensus 3 ~~v~V~~k~gv~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~~i~~~lL~Npvie~~~ 69 (73)
T PRK06423 3 FKVEVTYKPGVEDPEALTILKNLNILGYNGIKGVSISKVYYFDADSYNEVDEIAGKILTNPVIHSYK 69 (73)
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEecCCHHHHHHHHHHhcCCceeeEEE
Confidence 458999999999999999999998898752 45588888888763
No 57
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=94.79 E-value=0.022 Score=61.73 Aligned_cols=93 Identities=16% Similarity=0.160 Sum_probs=66.7
Q ss_pred cccccccccceeEEECCccChHhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEE
Q psy5568 280 SEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDII 359 (685)
Q Consensus 280 SEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 359 (685)
||-|-||+ -+.-|-.........-..+++.+.+|++++++.. .+..++
T Consensus 12 ~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~g~GdDaavi~~~---------------------~~~~lv 59 (323)
T TIGR03267 12 FEGVTRKH-----------PIKDVVEILEPLDVTYEGNVIVDFGDDAAAIKIG---------------------GDDILL 59 (323)
T ss_pred Cccchhhc-----------CHHHHHHHhccccccCCCCeeeccCCceEEEEcC---------------------CCCEEE
Confidence 68899993 2222333322111112366788899999999842 134677
Q ss_pred EeeCCC-CCCccccCCCCccccccceeeeecccCCCCeeeecccceEe
Q psy5568 360 FTAETH-NFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCV 406 (685)
Q Consensus 360 ~k~ETH-NhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~ 406 (685)
+++.+. .+|...+||.++.--+-..+||+.+| ||+|++.++.+++
T Consensus 60 istD~~~~~~~~~~p~~~G~~av~~nlsDiaam--Ga~P~~~~~~L~~ 105 (323)
T TIGR03267 60 LAADGIWGKLLDADPWWAGYCAVLVNVNDIAAM--GGKPVGMVNVLSI 105 (323)
T ss_pred EEecCcCCcccccChhHhhHHhhhhhhhhHHhc--CCEehhHhhhhcC
Confidence 887765 35777899999888899999999999 9999999988876
No 58
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=93.91 E-value=0.38 Score=60.87 Aligned_cols=130 Identities=12% Similarity=0.025 Sum_probs=87.0
Q ss_pred HHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeeccccCC-cccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceE
Q psy5568 520 DACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEK-ASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSL 598 (685)
Q Consensus 520 ~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~-~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~l 598 (685)
.++++-.....++ |+|++.|-.-.+....++ .....|....+.+|.++.. .++..--.+| + .|
T Consensus 224 ~~~~~~~~~ln~~----------G~P~i~Gf~r~~~~~~~~~~~~~kpim~~G~lg~i~~~--~~~k~~~~~G-~---~i 287 (1202)
T TIGR01739 224 AMLQAQASALRAS----------GVPTCGGFIRLISKNKLSLPTPYTPTYNTSILDRLCHV--TINTADEPPG-Q---DI 287 (1202)
T ss_pred HHHHHHHHHHHhc----------CCCccceEEEEecccccccccCCCCeEEccccCCCChh--hcccccCCCC-C---EE
Confidence 6677777889999 999999987644321111 1122577777888887632 2332223577 4 56
Q ss_pred EEEEcCC--CcCccchhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHc----CCcEEEEcCCcchHHHHHHHHHhc
Q psy5568 599 LWIDLSC--GQHRVGGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQD----GQVLSGHDISDGGLLICLLEMDVG 672 (685)
Q Consensus 599 v~i~lg~--~~~~lGGS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~----glv~A~HDvSdGGL~~aLaEMa~a 672 (685)
|.| |. .+..+||..+. .-+++..+.+..+++..+.+. .+..+.||+..||+..+|.||+.
T Consensus 288 V~l--Gg~~~~~G~~G~~~s-----------~~~s~~~~~~iq~~i~~~~~~~~~~~i~~sI~D~Gagg~sn~l~El~~- 353 (1202)
T TIGR01739 288 VAL--GQFEPSLLPDTPPLL-----------YADSPLDVNKILTALALLTDDVKTPCIVGSIRPLGPCSVKEHLTALLP- 353 (1202)
T ss_pred EEE--CCCCCCCCCCCCccc-----------cCCCHHHHHHHHHHHHHHHHhccCCeeEEEecCCCCchHHHHHHHHhc-
Confidence 665 53 34556666532 124677788888887776652 34589999999999999999998
Q ss_pred CCCCeEEE
Q psy5568 673 ANSPKGWV 680 (685)
Q Consensus 673 g~~G~~I~ 680 (685)
.+|++|+
T Consensus 354 -~~G~~i~ 360 (1202)
T TIGR01739 354 -PCGAELD 360 (1202)
T ss_pred -cCceEEE
Confidence 6688765
No 59
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=93.73 E-value=0.079 Score=46.09 Aligned_cols=28 Identities=11% Similarity=0.062 Sum_probs=25.9
Q ss_pred EEEEecCCCcCChhhhhHHHHHHHcCcc
Q psy5568 165 VIEVGPRLNFSTPFCSNVLSICQSIQLH 192 (685)
Q Consensus 165 ~ieV~PR~G~~spwss~a~~i~~~~gl~ 192 (685)
.++|++|||+.||.+.++.+.++.+|+.
T Consensus 4 ~V~V~~k~gv~Dp~G~ai~~~l~~lg~~ 31 (80)
T PRK05974 4 KVTVTLKEGVLDPQGQAIKGALGSLGYD 31 (80)
T ss_pred EEEEEECCCCcChHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999885
No 60
>KOG3939|consensus
Probab=93.72 E-value=0.39 Score=50.14 Aligned_cols=102 Identities=15% Similarity=0.116 Sum_probs=65.2
Q ss_pred ecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeee
Q psy5568 470 LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGG 549 (685)
Q Consensus 470 ~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgG 549 (685)
.-|||.++|.|.+..+.+|.++|...-..+..++.....-...+.+--+--.++|..|++.+- |.|+.||
T Consensus 26 vddpy~mgriacanvlsdlyamgvtecdnmlmll~vs~~~~ekerd~v~pl~~~gfkdaa~e~----------gt~v~gg 95 (312)
T KOG3939|consen 26 VDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLSVSTSMSEKERDVVIPLIIQGFKDAAEEA----------GTPVTGG 95 (312)
T ss_pred cCChHHhhHHHHHHHHHHHHHhcccccccchhhhhhhhhhhhhhhchhhHHHHHHhHHHHHhc----------CCceecC
Confidence 359999999999999999999999864443322221111010111222445799999999999 9999999
Q ss_pred eceeeccccCCcccCCcceEEEEEe-eeCCCCcccCCCCcCCCCC
Q psy5568 550 IGTMKHELKEKASPNVGSLVISTYA-PCPDIRQVVTPDIKSPRLG 593 (685)
Q Consensus 550 kdSm~~~~~~~~v~ippTlvisa~g-~v~d~~~~vtp~~k~~G~d 593 (685)
.+- -|-| .++..++ .|......+-|+-.-|| |
T Consensus 96 qtv-~npw----------~~igGVatsVcq~ne~i~pdnAvpG-d 128 (312)
T KOG3939|consen 96 QTV-INPW----------CIIGGVATSVCQPNEIIMPDNAVPG-D 128 (312)
T ss_pred eee-cCcc----------eeeccccccccCccceecccCCCCc-c
Confidence 663 2322 3332222 23334566777777899 6
No 61
>KOG0237|consensus
Probab=93.70 E-value=0.21 Score=57.62 Aligned_cols=173 Identities=16% Similarity=0.091 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeece----
Q psy5568 477 ARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGT---- 552 (685)
Q Consensus 477 a~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdS---- 552 (685)
+.--|+-++++|++.|++|+.-.+.. ..-++ +..--.+.+++|.+.|++- ++..+||.++
T Consensus 515 G~DlvAm~vNDii~~gAePl~FLDYf----a~gkL--d~~va~~~v~gia~gC~qa----------~CaLvGGETaEMP~ 578 (788)
T KOG0237|consen 515 GIDLVAMNVNDIIVQGAEPLFFLDYF----ATGKL--DVSVAEQVVKGIAEGCRQA----------GCALVGGETAEMPG 578 (788)
T ss_pred ceeeeeeehhhHhhcCCcceeehhhh----hhccc--chHHHHHHHHHHHHHHhhc----------cceeeccccccCCC
Confidence 34456778999999999998866642 11222 1111235789999999999 9999999999
Q ss_pred eeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcC-CCcCccchhHHHHHhhh----hcCCCC
Q psy5568 553 MKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLS-CGQHRVGGSALSQVLAE----VRGPSP 627 (685)
Q Consensus 553 m~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg-~~~~~lGGS~la~~~~~----~g~~~P 627 (685)
||.. |+ .. +.=+++|.++......-++--.+| | |+|+|. .+-+.-|=|...++... ...+.|
T Consensus 579 ~Y~~--g~-yD----laG~Avga~e~~~iLp~~~ei~~G-D-----VllGL~SsGvHSNGfSLvrkil~~~~l~~~~~~P 645 (788)
T KOG0237|consen 579 MYAP--GE-YD----LAGFAVGAVERTDILPKLNEIVAG-D-----VLLGLPSSGVHSNGFSLVRKILARSGLSYKDPLP 645 (788)
T ss_pred CCCC--Cc-cc----cccceEeeeeccCcCCCccccccC-c-----EEEeccccccccCcHHHHHHHHHhcCCccCCCCC
Confidence 5542 21 11 223466766643222122212577 5 344443 34444454544444322 223344
Q ss_pred CcCCHHHHHH--------HHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 628 DVEDAAALVR--------AFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 628 ~v~d~~~~k~--------~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.- +-..+-. .-+.+.-++++|.|.++-.|+-|||.-.+-.| +-.++|+.|+
T Consensus 646 ~~-~~~tlGd~LL~pTkiYvk~ll~~i~~g~vkg~AHITGGGl~ENipRv-lp~~l~~~id 704 (788)
T KOG0237|consen 646 WD-SSKTLGDELLAPTKIYVKQLLPLIRKGGVKGLAHITGGGLTENIPRV-LPDHLGAVID 704 (788)
T ss_pred CC-cccchhhhhccccEEehhhhHHHHHhcccceeeeecCCCccccchhh-cccccceEEe
Confidence 32 1111111 12234457889999999999999998777666 4477777765
No 62
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=93.44 E-value=0.095 Score=45.60 Aligned_cols=29 Identities=3% Similarity=-0.028 Sum_probs=26.3
Q ss_pred cEEEEecCCCcCChhhhhHHHHHHHcCcc
Q psy5568 164 NVIEVGPRLNFSTPFCSNVLSICQSIQLH 192 (685)
Q Consensus 164 ~~ieV~PR~G~~spwss~a~~i~~~~gl~ 192 (685)
+-++|+||||+.||.+.++...++.+|+.
T Consensus 3 ~~I~V~~k~gV~Dp~G~ti~~~l~~lg~~ 31 (80)
T TIGR00302 3 VEVYIRLKKGVLDPEGAAIQRALALLGYN 31 (80)
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHcCCC
Confidence 35899999999999999999999989886
No 63
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=92.97 E-value=0.031 Score=59.54 Aligned_cols=66 Identities=14% Similarity=0.149 Sum_probs=55.9
Q ss_pred eeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeee
Q psy5568 319 VIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCI 398 (685)
Q Consensus 319 v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pi 398 (685)
...++|++++++.. .+..+++++. |++|...+||..+...+...++|+.+| ||+|+
T Consensus 37 ~~~~gdDaavi~~~---------------------~~~~lv~stD-~~~~~~~~p~~~G~~av~~~~sDiaa~--Ga~P~ 92 (287)
T cd02195 37 GLGTGDDAAVYRLP---------------------GGLALVQTTD-FFPPIVDDPYLFGRIAAANALSDIYAM--GAKPL 92 (287)
T ss_pred cCCCCCcEEEEEeC---------------------CCcEEEEEec-CCCCCCCCHHHHHHHHHHHHHHHHHhc--CchHH
Confidence 44577999999831 1346788887 999988999999999999999999999 99999
Q ss_pred ecccceEecc
Q psy5568 399 AGTAGYCVGN 408 (685)
Q Consensus 399 a~~~~~~~g~ 408 (685)
+-++.+.+++
T Consensus 93 ~~~~~l~lp~ 102 (287)
T cd02195 93 SALAIVTLPR 102 (287)
T ss_pred HHHHHhcCCC
Confidence 9999998864
No 64
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=92.35 E-value=0.05 Score=57.74 Aligned_cols=81 Identities=11% Similarity=0.163 Sum_probs=59.1
Q ss_pred hHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeC-----CCCCCccccCCCC
Q psy5568 302 CLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAE-----THNFPTGVSPFSG 376 (685)
Q Consensus 302 sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~E-----THNhPsai~Pf~G 376 (685)
.|.+.|+.... .+++++...+|++++++. . +..+++++. +|.+|.. +||..
T Consensus 4 ~li~~~~~~~~-~~~~~~~~~gdDaavi~~-~---------------------~~~lv~t~D~~~~~~~f~~~~-~p~~~ 59 (291)
T cd02194 4 ELIDRLFKRLG-AGPGVLLGIGDDAAVLKP-P---------------------GGRLVVTTDTLVEGVHFPPDT-TPEDI 59 (291)
T ss_pred HHHHHHHhhcC-CCCccCCCCCCCEEEecC-C---------------------CCeEEEEecccccccCCCCCC-CHHHH
Confidence 45555543222 223567788999999982 1 234555554 3666665 99999
Q ss_pred ccccccceeeeecccCCCCeeeecccceEecc
Q psy5568 377 ATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 377 AaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~ 408 (685)
+.-.+...++|+.+| ||+|++-++.+++.+
T Consensus 60 G~~av~~~~sDi~a~--Ga~P~~~~~~l~~p~ 89 (291)
T cd02194 60 GWKALAVNLSDLAAM--GARPLGFLLSLGLPP 89 (291)
T ss_pred HHHHHHHHHHHHHHc--CCccceeEEEEECCC
Confidence 999999999999999 999999999888753
No 65
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=92.14 E-value=0.18 Score=44.04 Aligned_cols=43 Identities=12% Similarity=0.140 Sum_probs=32.4
Q ss_pred EEEEecCCCcCChhhhhHHHHHHHcCcch-----------------------------hhhhhcccccceee
Q psy5568 165 VIEVGPRLNFSTPFCSNVLSICQSIQLHS-----------------------------CAESFYDRMTECVY 207 (685)
Q Consensus 165 ~ieV~PR~G~~spwss~a~~i~~~~gl~~-----------------------------~~~~L~d~mte~~~ 207 (685)
.++|.||+|+.||.+..+.+.++++|... +..+|.|+.+|.+.
T Consensus 4 ~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~~~~e~a~~~v~~i~~~LLaNpvie~y~ 75 (80)
T PF02700_consen 4 RVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEADDEEEAEEQVEEICEKLLANPVIEDYE 75 (80)
T ss_dssp EEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-SSHHHHHHHHHHHHHHTTS-TTTEEEE
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeCCCHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 48899999999999999999999999974 55678888888763
No 66
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=88.35 E-value=0.14 Score=54.49 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCC-CCCCccccCCCCccccccceeeeecccCCC
Q psy5568 316 QNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAET-HNFPTGVSPFSGATTGTGGRIRDVQAVGRG 394 (685)
Q Consensus 316 ~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ET-HNhPsai~Pf~GAaTG~GG~iRD~~~~GrG 394 (685)
-+++.+.+|++++++. .+..+++++++ |...+..+||.++...+-..++|+.+| |
T Consensus 28 ~~~~~g~GdDaavi~~----------------------~~~~lvit~D~~~~~~~~~~p~~~G~~av~~~vsDiaa~--G 83 (283)
T cd02192 28 LGVAADLGDDAAAIPD----------------------GDGYLLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAM--G 83 (283)
T ss_pred cCccCCCCCCEEEEec----------------------CCcEEEEEecccccccccCCHHHHHHHHHHHHHHHHHhc--C
Confidence 3466688899999962 14578899998 443456789999999999999999999 9
Q ss_pred CeeeecccceEec
Q psy5568 395 GNCIAGTAGYCVG 407 (685)
Q Consensus 395 a~pia~~~~~~~g 407 (685)
|+|++.++.+.+.
T Consensus 84 a~P~~~~~~l~~p 96 (283)
T cd02192 84 GRPLAMVDALWSP 96 (283)
T ss_pred CEeeeeeeeecCC
Confidence 9999999888763
No 67
>PRK00943 selenophosphate synthetase; Provisional
Probab=85.55 E-value=0.41 Score=52.50 Aligned_cols=81 Identities=23% Similarity=0.260 Sum_probs=57.7
Q ss_pred ChHhHHHH-hhhhc-cccCCCceeec--ccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCC
Q psy5568 299 SDKCLFEM-IMDTT-KHSNQNNVIKF--NDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPF 374 (685)
Q Consensus 299 ~~~sL~~~-i~~t~-~~~~~~~v~~~--~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf 374 (685)
.+..+++. +.... ...++.+++++ +|++++++.. ++..+++++.+. +|...+||
T Consensus 21 ~~~~~l~~~~~~~~~~~~~~~v~~g~~~gdDaavi~~~---------------------~~~~lv~t~D~~-~p~~~~p~ 78 (347)
T PRK00943 21 ISPKVLETILASEQAKFVDPNLLVGNETRDDAAVYDLN---------------------DGTGIISTTDFF-MPIVDDPF 78 (347)
T ss_pred cCHHHHHHHHHhccccCCCCCeeecCCCCCceEEEEeC---------------------CCcEEEEEcccC-CCCCCCHH
Confidence 56666664 44322 13456777776 4999999842 245678888886 78888999
Q ss_pred C---CccccccceeeeecccCCCCeeeecccceEe
Q psy5568 375 S---GATTGTGGRIRDVQAVGRGGNCIAGTAGYCV 406 (685)
Q Consensus 375 ~---GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~ 406 (685)
. -|.++ .+.|+.+| ||+|++.++.+.+
T Consensus 79 ~~G~~Av~~---~~sDiaAm--Ga~P~~~l~~l~l 108 (347)
T PRK00943 79 DFGRIAATN---AISDIYAM--GGKPIMAIAILGW 108 (347)
T ss_pred HHHHHHHHH---HhhHhhcc--CccHHhHhheeec
Confidence 7 45444 89999999 9999999988743
No 68
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=83.85 E-value=5.8 Score=33.87 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=35.9
Q ss_pred HHHHhcCCCC-cceEEEEEEEEEecCCCCCHHHHHHHH-hhccccccc
Q psy5568 105 TKKLKAVPKV-ISDIESELCYNIEISRELTPVELDKLH-WILNSSFEC 150 (685)
Q Consensus 105 l~~l~~~~~~-V~~Vrte~vY~Vel~~~Ls~ee~~~L~-~LLs~~~~~ 150 (685)
++.|+.++.+ |.+|++-.+|.++ + +++++.+.+. .||++|+.+
T Consensus 22 ~~~l~~lg~~~v~~Vr~~k~~~l~--~-~~~~~~~~i~~~lL~Npvie 66 (73)
T PRK06423 22 LKNLNILGYNGIKGVSISKVYYFD--A-DSYNEVDEIAGKILTNPVIH 66 (73)
T ss_pred HHHHHHcCCCCcceEEEEEEEEEe--c-CCHHHHHHHHHHhcCCceee
Confidence 7778887775 9999999999997 3 7888888886 599999755
No 69
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=83.82 E-value=5 Score=34.86 Aligned_cols=60 Identities=10% Similarity=0.144 Sum_probs=43.2
Q ss_pred EEEccCCCCChHHH--HHHHhcCCCC-cceEEEEEEEEEecCC---CCCHHHHHHHH-hhccccccc
Q psy5568 91 IRYYSKPGIGAGEK--TKKLKAVPKV-ISDIESELCYNIEISR---ELTPVELDKLH-WILNSSFEC 150 (685)
Q Consensus 91 l~l~G~~als~fr~--l~~l~~~~~~-V~~Vrte~vY~Vel~~---~Ls~ee~~~L~-~LLs~~~~~ 150 (685)
.+.+.+.-+.+--. ++.|+.++.. |.+||+-.+|.++.++ +++.++.+.+. .||++|+.+
T Consensus 6 ~V~~k~gv~Dp~G~ai~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~a~~~v~~i~~~lL~Npvie 72 (80)
T PRK05974 6 TVTLKEGVLDPQGQAIKGALGSLGYDGVEDVRQGKYFELELEGESEEKAEADLKEMCEKLLANPVIE 72 (80)
T ss_pred EEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCCchhhhHHHHHHHHHHhcCCceee
Confidence 33344334444333 7778887775 9999999999998655 47788888886 599998765
No 70
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=82.07 E-value=0.21 Score=52.00 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=47.4
Q ss_pred ceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEecc
Q psy5568 355 DLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 355 ~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~ 408 (685)
...+++++.+|...+.++||.|+...+...++|+.+| ||+|++.+..++++.
T Consensus 12 ~~~~~~t~d~~~~~~~~~p~~~g~~av~~~~sDiaa~--Ga~P~~~~~~l~~~~ 63 (264)
T cd02204 12 DKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAV--GADPLAITDCLNFGN 63 (264)
T ss_pred CeEEEEEcCCCCceeeeCHHHHHHHHHHHHHHHHhhh--CCchHheeeceeccC
Confidence 5679999999988889999999999999999999998 999998888887754
No 71
>PRK05783 hypothetical protein; Provisional
Probab=79.78 E-value=2.3 Score=37.70 Aligned_cols=29 Identities=3% Similarity=-0.103 Sum_probs=25.5
Q ss_pred EEEEecCCCcCChhhhhHHHHHHHcCcch
Q psy5568 165 VIEVGPRLNFSTPFCSNVLSICQSIQLHS 193 (685)
Q Consensus 165 ~ieV~PR~G~~spwss~a~~i~~~~gl~~ 193 (685)
-+.|.+|+|+.||.+......++.+|+..
T Consensus 6 ~V~V~lK~gVlDPqG~aI~~aL~~lg~~~ 34 (84)
T PRK05783 6 ELIIINKDSVRDPEGETIQRYVIERYTGN 34 (84)
T ss_pred EEEEEECCCCcCchHHHHHHHHHHcCCCC
Confidence 37899999999999999999998888753
No 72
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=79.62 E-value=1.7 Score=46.10 Aligned_cols=83 Identities=5% Similarity=-0.037 Sum_probs=52.2
Q ss_pred ccChHhHHHHhhhhccccCCCceee--cccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCC
Q psy5568 297 IESDKCLFEMIMDTTKHSNQNNVIK--FNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPF 374 (685)
Q Consensus 297 ~~~~~sL~~~i~~t~~~~~~~~v~~--~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf 374 (685)
+-.+..|.+++....+.+++.++.+ .+|++++++.. +..+++++++ -.-.||
T Consensus 4 k~~e~~l~~~~~~~~~~~~~~~~~g~~~gdDaav~~~~----------------------~~~lv~s~D~----~~~~~~ 57 (298)
T cd06061 4 KLPPEFLKRLILKNLGADRDEVLVGPGGGEDAAVVDFG----------------------GKVLVVSTDP----ITGAGK 57 (298)
T ss_pred CCCHHHHHHHHHhhcCCCCcccccCCCccceeEEEeeC----------------------CcEEEEEcCc----eeeCCc
Confidence 3345566777654444444556655 68999998731 1234444432 111166
Q ss_pred CCccccccceeeeecccCCCCeeeecccceEec
Q psy5568 375 SGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVG 407 (685)
Q Consensus 375 ~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g 407 (685)
....--+-..++|+.+| ||+|++-+..+++.
T Consensus 58 ~iG~~av~~~~sDi~am--Ga~P~~~~~~l~~p 88 (298)
T cd06061 58 DAGWLAVHIAANDIATS--GARPRWLLVTLLLP 88 (298)
T ss_pred ceeeehhhhhHHHHHhc--CCCCceeEEEEEcC
Confidence 65555555569999999 99999999999873
No 73
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=78.35 E-value=0.88 Score=49.85 Aligned_cols=82 Identities=13% Similarity=0.227 Sum_probs=56.6
Q ss_pred ChHhHHH-Hhhhhc--cccCCCceee--cccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccC
Q psy5568 299 SDKCLFE-MIMDTT--KHSNQNNVIK--FNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSP 373 (685)
Q Consensus 299 ~~~sL~~-~i~~t~--~~~~~~~v~~--~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~P 373 (685)
.+.+.++ ++.... ....+.++.+ ++|++++++.. .+..++++..+ .+|...+|
T Consensus 21 ~~~~~L~~~l~~~~~~~~~~~~~~~g~~~gDDaAvi~~~---------------------~~~~lv~ttD~-~~p~~~~p 78 (347)
T TIGR00476 21 VPPDVLQKLLKGLQENHFVDDNQLVGAVMGDDAVIYLRH---------------------NGLSLVQTTDY-ITPIVDDP 78 (347)
T ss_pred cCHHHHHHHHHhCCcccccCCceeecCCCCCCeEEEEec---------------------CCeEEEEEecc-CCCCccCH
Confidence 4454554 344321 1134677778 88999999832 24567788877 47888899
Q ss_pred CCCccccccceeeeecccCCCCeeeecccce
Q psy5568 374 FSGATTGTGGRIRDVQAVGRGGNCIAGTAGY 404 (685)
Q Consensus 374 f~GAaTG~GG~iRD~~~~GrGa~pia~~~~~ 404 (685)
|.-.--.+-..++|+.+| |++|++.+...
T Consensus 79 ~~~G~~av~~~lsDiaam--Ga~P~~~l~~~ 107 (347)
T TIGR00476 79 YMMGRIAAANALSDIYAM--GGTPIDAMLIL 107 (347)
T ss_pred HHHHHHHHHHHHHhhhhc--CchHHHHHhhc
Confidence 985545566699999999 99999877543
No 74
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=78.01 E-value=11 Score=32.65 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=40.3
Q ss_pred EEEccCCCCChHHH--HHHHhcCCCC-cceEEEEEEEEEecCCCC---CHHHHHHHH-hhccccccc
Q psy5568 91 IRYYSKPGIGAGEK--TKKLKAVPKV-ISDIESELCYNIEISREL---TPVELDKLH-WILNSSFEC 150 (685)
Q Consensus 91 l~l~G~~als~fr~--l~~l~~~~~~-V~~Vrte~vY~Vel~~~L---s~ee~~~L~-~LLs~~~~~ 150 (685)
.+.+.+.-+.+--. ++.|+.++.+ |.+||+-.+|.+..++.. +.++.+.+. .||++|+.+
T Consensus 6 ~V~~k~gV~Dp~G~ti~~~l~~lg~~~v~~Vr~~k~~~l~~~~~~~~~a~~~v~~i~~~lL~Npvie 72 (80)
T TIGR00302 6 YIRLKKGVLDPEGAAIQRALALLGYNEVKDVRTGKVIELTIEADSEEAVEREVEEMCEKLLANPVIH 72 (80)
T ss_pred EEEECCCCcChHHHHHHHHHHHcCCCCcceEEEEEEEEEEEcCCChhhHHHHHHHHHHHhcCCceee
Confidence 33344333444333 7778887775 999999999999754443 346677775 599998764
No 75
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=73.20 E-value=4.6 Score=35.71 Aligned_cols=28 Identities=7% Similarity=0.023 Sum_probs=25.9
Q ss_pred EEEEecCCCcCChhhhhHHHHHHHcCcc
Q psy5568 165 VIEVGPRLNFSTPFCSNVLSICQSIQLH 192 (685)
Q Consensus 165 ~ieV~PR~G~~spwss~a~~i~~~~gl~ 192 (685)
.+.|.+++|+.||.+......++.+|..
T Consensus 5 ~V~V~lK~~VlDPqG~ti~~aL~~lg~~ 32 (83)
T COG1828 5 RVYVTLKPGVLDPEGETIEKALHRLGYN 32 (83)
T ss_pred EEEEEeCCcccCchhHHHHHHHHHcCCc
Confidence 4789999999999999999999999976
No 76
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=66.75 E-value=2 Score=47.38 Aligned_cols=68 Identities=16% Similarity=0.208 Sum_probs=54.1
Q ss_pred cCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeC-CCCCCccccCCCCccccccceeeeecccC
Q psy5568 314 SNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAE-THNFPTGVSPFSGATTGTGGRIRDVQAVG 392 (685)
Q Consensus 314 ~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~E-THNhPsai~Pf~GAaTG~GG~iRD~~~~G 392 (685)
..++++..+.|+|+++... +..++++.+ +|-.++ ..||.-.---+...++|+.+|
T Consensus 27 ~~~~~~~~~dDdaa~~~~~----------------------~~~lv~ttDgvh~~~~-~~p~~~G~~av~~nvSDIaAm- 82 (346)
T cd02691 27 TGEVSIVAQDDDAGVDAAD----------------------VEYIVVAIDGIHSRLS-DFPFLAGFHATRAALRDVMVM- 82 (346)
T ss_pred hcCCccccccCceEEEccC----------------------CCeEEEEeCCCCCCcc-cChHHHHHHHHHHHHHHHHHc-
Confidence 4589999999999998842 346778877 554444 589877667777899999999
Q ss_pred CCCeeeecccceEe
Q psy5568 393 RGGNCIAGTAGYCV 406 (685)
Q Consensus 393 rGa~pia~~~~~~~ 406 (685)
||+|++-+.++.+
T Consensus 83 -Ga~P~~~l~sl~l 95 (346)
T cd02691 83 -GARPVALLSDIHL 95 (346)
T ss_pred -CCchHHhheeeec
Confidence 9999999888876
No 77
>PHA03366 FGAM-synthase; Provisional
Probab=59.73 E-value=30 Score=44.76 Aligned_cols=140 Identities=12% Similarity=0.099 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEE--EEEeeeCCCCcccCCCCcCCCC
Q psy5568 515 GAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVI--STYAPCPDIRQVVTPDIKSPRL 592 (685)
Q Consensus 515 ~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvi--sa~g~v~d~~~~vtp~~k~~G~ 592 (685)
..++..++++-.+...++ |+|+++|-+-.........-..+|.... +.+|.++. ....+.. -.+|
T Consensus 309 ~~~~~~~~~~~~~~lnk~----------G~Pvi~Gf~r~~~~~~~~~~~~~~~m~~~~~~~g~~~~-~~~~~~~-~~~g- 375 (1304)
T PHA03366 309 PRQIAETLEAQARSLNCS----------GVPVVGGFLRTIPTTLALISPLPNNMLTFTSLLSTIST-IALDTAR-YRPG- 375 (1304)
T ss_pred HHHHHHHHHHHHHHHhhc----------CCCEeccEeEEeccccccccccCCceeeecccccccch-hhhccCC-CCCC-
Confidence 456777888888889999 9999999876322111111122333333 45555542 1112222 2366
Q ss_pred CCcceEEEEEcCCCcCccchhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCc-EEEEcCCcchHHHHHHHHHh
Q psy5568 593 GYSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQV-LSGHDISDGGLLICLLEMDV 671 (685)
Q Consensus 593 d~~s~lv~i~lg~~~~~lGGS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv-~A~HDvSdGGL~~aLaEMa~ 671 (685)
+ .||.| |.-+..+||..-..++.. ..+ ++....+....+++......| .+.||-..||..-+|.|.+.
T Consensus 376 ~---~vv~l--G~y~~~~g~~a~~~~~~~-----S~~-~~navqr~~~~m~~~~~~~~v~~si~d~g~~~~~~~L~elv~ 444 (1304)
T PHA03366 376 Q---YIVAL--GSFEPSSGPDTPPYLYRD-----SGL-EANKILQALKLFYSLLPGPCISGSSRPLGPASVLEHLLALCP 444 (1304)
T ss_pred C---EEEEE--cCceecCCCCCCCccccc-----CHH-HHHHHHHHHHHHHhhcCCceEEEecCCCCcchHHHHHHHHhc
Confidence 3 45554 655455555432222211 112 344444444445544444433 48899999999999999998
Q ss_pred cCCCCeEEE
Q psy5568 672 GANSPKGWV 680 (685)
Q Consensus 672 ag~~G~~I~ 680 (685)
..|+.|+
T Consensus 445 --p~G~~i~ 451 (1304)
T PHA03366 445 --PGGLLLF 451 (1304)
T ss_pred --cCceEEE
Confidence 4577765
No 78
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=57.80 E-value=2 Score=46.89 Aligned_cols=87 Identities=7% Similarity=-0.063 Sum_probs=51.3
Q ss_pred hHHHHhhhhcc-ccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCcc----ccCCC-
Q psy5568 302 CLFEMIMDTTK-HSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTG----VSPFS- 375 (685)
Q Consensus 302 sL~~~i~~t~~-~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsa----i~Pf~- 375 (685)
.|.+.|++..+ ..++.++.+++|++++++... ..++..+++++.+-.--.. .+|+-
T Consensus 15 ~li~~~~~~~~~~~~~~v~~g~GdDaav~~~~~------------------~~~~~~l~~t~D~~g~~~~~~~~~~~~~~ 76 (332)
T TIGR00878 15 EAVKRIKSLVKKTRRPEVMGGLGGFAGLFDLGD------------------KYKEPVLVSGTDGVGTKLLVAEAMNKHDT 76 (332)
T ss_pred HHHHHHHHHHHhhCCCCcccCCCCCeEEEEccc------------------ccCCceEEEeccccccchHHHHHcCchHH
Confidence 34555443332 234567778999999998421 0111467777776422222 22322
Q ss_pred CccccccceeeeecccCCCCeeeecccceEecc
Q psy5568 376 GATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 376 GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~ 408 (685)
-+-=.+-..+||+.+| ||+|++.++.+.+++
T Consensus 77 ~G~~av~~n~sDiaa~--Ga~P~~~~~~l~~~~ 107 (332)
T TIGR00878 77 IGIDLVAMNVNDLLVQ--GAEPLFFLDYLAVGK 107 (332)
T ss_pred HHHHHHHHHHHHHHHc--CCcHHHHHHHHhcCC
Confidence 1112233456999999 999999998887654
No 79
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=55.79 E-value=37 Score=29.70 Aligned_cols=62 Identities=6% Similarity=0.090 Sum_probs=39.3
Q ss_pred EEEEEccCCCCChHHH--HHHHhcCCCC-cceEEEEEEEEEecCCC---CCHHHHHHHH-hhccccccc
Q psy5568 89 AIIRYYSKPGIGAGEK--TKKLKAVPKV-ISDIESELCYNIEISRE---LTPVELDKLH-WILNSSFEC 150 (685)
Q Consensus 89 ~ml~l~G~~als~fr~--l~~l~~~~~~-V~~Vrte~vY~Vel~~~---Ls~ee~~~L~-~LLs~~~~~ 150 (685)
.+.+.+.+.-+.+--. ++.|+.++.. |++||+-.+|.+.++.+ ...++.+.++ .||.+|+.+
T Consensus 4 ~V~V~~K~gvlDPqG~ai~~al~~lG~~~v~~Vr~GK~~~l~~~~~~~e~a~~~v~~i~~~LLaNpvie 72 (80)
T PF02700_consen 4 RVEVTLKPGVLDPQGEAIKRALHRLGYDGVKDVRVGKYIELELEADDEEEAEEQVEEICEKLLANPVIE 72 (80)
T ss_dssp EEEEEE-TTS--HHHHHHHHHHHHTT-TTEEEEEEEEEEEEEEE-SSHHHHHHHHHHHHHHTTS-TTTE
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCcccCcEEEEEEEEEEEeCCCHHHHHHHHHHHHHHhcCCCceE
Confidence 3556666666766655 7778887764 99999999998886543 1245555664 699998765
No 80
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=52.14 E-value=13 Score=31.39 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=13.4
Q ss_pred HHHHHHHhhcCCCCcHHHHHh
Q psy5568 254 YYTDIFRNKLKRNPTSVECFD 274 (685)
Q Consensus 254 ~i~~~f~~~l~R~PtdvEl~~ 274 (685)
...+.+..++||.||+.|+.-
T Consensus 8 ~a~~~L~~~lgr~Pt~eEiA~ 28 (78)
T PF04539_consen 8 RARRELEQELGREPTDEEIAE 28 (78)
T ss_dssp HHHHHHHHHHSS--BHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHH
Confidence 334444478999999999954
No 81
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=51.13 E-value=2.2 Score=46.26 Aligned_cols=75 Identities=5% Similarity=-0.107 Sum_probs=46.9
Q ss_pred cCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCC-----CCCCccccCCCCccccccceeeee
Q psy5568 314 SNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAET-----HNFPTGVSPFSGATTGTGGRIRDV 388 (685)
Q Consensus 314 ~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ET-----HNhPsai~Pf~GAaTG~GG~iRD~ 388 (685)
.++.++.+.+|++++++... . + .+..++++..+ |-|+..-.|+.-+-=-+--.++|+
T Consensus 28 ~~~~v~~giGdDaav~~~~~---~-----------~----~~~~lv~t~D~~~~~~~~~~~~~~~~~iG~~av~~n~sDI 89 (327)
T PRK05385 28 FRPEVLGGLGGFGGLFDLPK---G-----------Y----KEPVLVSGTDGVGTKLKLAIDLGKHDTIGIDLVAMCVNDL 89 (327)
T ss_pred CCCccccCCcCccEEEeccc---c-----------c----CCcceeeccccccchhHHHHHhCCHhhHHHHHHHHHHHHH
Confidence 44677778999999998421 0 0 01234444444 444432234443333455679999
Q ss_pred cccCCCCeeeecccceEecc
Q psy5568 389 QAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 389 ~~~GrGa~pia~~~~~~~g~ 408 (685)
.+| ||+|++.++.+.+.+
T Consensus 90 aam--Ga~P~~~~~~l~~~~ 107 (327)
T PRK05385 90 LVQ--GAEPLFFLDYIATGK 107 (327)
T ss_pred HHc--CCCHHHHHHHHhcCC
Confidence 999 999999998887643
No 82
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=49.13 E-value=70 Score=28.44 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=43.6
Q ss_pred EEEEccCCCCChHHH--HHHHhcCCC-CcceEEEEEEEEEecCCC---CCHHHHHHHH-hhccccccc
Q psy5568 90 IIRYYSKPGIGAGEK--TKKLKAVPK-VISDIESELCYNIEISRE---LTPVELDKLH-WILNSSFEC 150 (685)
Q Consensus 90 ml~l~G~~als~fr~--l~~l~~~~~-~V~~Vrte~vY~Vel~~~---Ls~ee~~~L~-~LLs~~~~~ 150 (685)
+.+-+.++-|.+--. .+-|..++. .|.+||+-.+|.++++.+ -.+++++.++ .||++|+..
T Consensus 6 V~V~lK~~VlDPqG~ti~~aL~~lg~~~V~~vR~gK~~el~ld~~~~e~a~~~v~~mcekLLaNpVIe 73 (83)
T COG1828 6 VYVTLKPGVLDPEGETIEKALHRLGYNEVSDVRVGKVIELELDAESEEKAEEEVKEMCEKLLANPVIE 73 (83)
T ss_pred EEEEeCCcccCchhHHHHHHHHHcCCcccceeeeeeEEEEEecCcchhHHHHHHHHHHHHHhCCCcee
Confidence 444556677777666 667777665 699999999999997653 2235566664 699998754
No 83
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=48.76 E-value=14 Score=39.40 Aligned_cols=76 Identities=20% Similarity=0.350 Sum_probs=49.4
Q ss_pred ChHhHHHH-hhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCC--C
Q psy5568 299 SDKCLFEM-IMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPF--S 375 (685)
Q Consensus 299 ~~~sL~~~-i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf--~ 375 (685)
-++++++. +.++.. ......+|++++++.. +..+++++.+. -.+|| .
T Consensus 5 ~~~~~i~~~~~~~~~----~~~~~~~DDaavi~~~----------------------~~~lv~ttD~~----~~~~~~~~ 54 (293)
T cd02197 5 LMQELIEELFLKAFD----NPILEVLEDAAALLVG----------------------GGRLAFTTDSF----VVSPLFFP 54 (293)
T ss_pred ccHHHHHHHHHHhcC----CcccccCCceEEEecC----------------------CceEEEEecCc----cccCcccC
Confidence 45566665 333221 1123456999999831 23577777764 23564 3
Q ss_pred Ccccc---ccceeeeecccCCCCeeeecccceEe
Q psy5568 376 GATTG---TGGRIRDVQAVGRGGNCIAGTAGYCV 406 (685)
Q Consensus 376 GAaTG---~GG~iRD~~~~GrGa~pia~~~~~~~ 406 (685)
+...| +--.++|+.+| ||+|++-++.+.+
T Consensus 55 ~~~iG~~av~~~~sDiaam--Ga~P~~~~~~l~l 86 (293)
T cd02197 55 GGDIGKLAVCGTVNDLAMM--GAKPLYLSLGFIL 86 (293)
T ss_pred chhHHHHHHHhhHHHHHHc--CCcchhheEEEEC
Confidence 43334 66789999999 9999999999986
No 84
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=40.13 E-value=13 Score=40.19 Aligned_cols=63 Identities=14% Similarity=0.285 Sum_probs=42.7
Q ss_pred CCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCC-----Cccccccceeeeecc
Q psy5568 316 QNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFS-----GATTGTGGRIRDVQA 390 (685)
Q Consensus 316 ~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~-----GAaTG~GG~iRD~~~ 390 (685)
++.+++.+|+++|++.. +..+++++.+. -.+||- .+---+.-.++|+.+
T Consensus 14 ~~~~~~~gdDaavi~~~----------------------~~~lv~ttD~~----~~~p~~~~~~~iG~~av~~n~sDiaa 67 (320)
T TIGR02124 14 GNEILAAMEDAAVLELS----------------------GGRLAFSTDSF----VVDPLFFPGGDIGKLAVCGTVNDVAV 67 (320)
T ss_pred CCcccCCCCceEEEeeC----------------------CCeEEEEecCC----ccCCcccCcccHHHHHHHHHHHHHHH
Confidence 34567899999999842 23466777644 123432 222235567999999
Q ss_pred cCCCCeeeecccceEe
Q psy5568 391 VGRGGNCIAGTAGYCV 406 (685)
Q Consensus 391 ~GrGa~pia~~~~~~~ 406 (685)
| ||+|++-++.+.+
T Consensus 68 m--Ga~P~~~~~~l~l 81 (320)
T TIGR02124 68 S--GAKPLYLSCGFIL 81 (320)
T ss_pred c--CCcchhhEEEEEc
Confidence 9 9999999887764
No 85
>PRK09389 (R)-citramalate synthase; Provisional
Probab=36.82 E-value=68 Score=37.17 Aligned_cols=52 Identities=13% Similarity=0.231 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHhcCCCCChhhHHHHHHHHHh--hcCCCCcHHHHHhhhhhhccc
Q psy5568 231 KGKVALQEVNQKLGLAFDEWDLEYYTDIFRN--KLKRNPTSVECFDLAQSNSEH 282 (685)
Q Consensus 231 ~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~--~l~R~PtdvEl~~~aq~wSEH 282 (685)
-|+.++....+++|+.+++++++.+.+.+++ .-||.-++.||..+......+
T Consensus 318 SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~~~~ 371 (488)
T PRK09389 318 AGRAALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDVLGI 371 (488)
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHhhh
Confidence 4688888888899999999999999999975 347889999988877554433
No 86
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=34.68 E-value=73 Score=35.57 Aligned_cols=49 Identities=20% Similarity=0.274 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHhcCCCCChhhHHHHHHHHHh---hcCCCCcHHHHHhhhhhh
Q psy5568 231 KGKVALQEVNQKLGLAFDEWDLEYYTDIFRN---KLKRNPTSVECFDLAQSN 279 (685)
Q Consensus 231 ~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~---~l~R~PtdvEl~~~aq~w 279 (685)
-|+.++...-+++|+.+++++++.+.+.+++ ..+|..|+.||..+....
T Consensus 320 SG~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~~el~~~~~~~ 371 (378)
T PRK11858 320 SGRHALKNKLKEYGIELSREELCELLEKVKELSERKKRSLTDEELKELVEDV 371 (378)
T ss_pred ccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 4678888888999999999999988888864 346899999998876543
No 87
>PF07587 PSD1: Protein of unknown function (DUF1553); InterPro: IPR022655 The function is not known. It is found associated with IPR011444 from INTERPRO It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=33.92 E-value=38 Score=35.96 Aligned_cols=32 Identities=25% Similarity=0.257 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcc
Q psy5568 250 WDLEYYTDIFRNKLKRNPTSVECFDLAQSNSE 281 (685)
Q Consensus 250 ~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSE 281 (685)
.+=+.|...|...|+|.||+.|+..+-+.-+|
T Consensus 235 ~~~~~I~~lyl~~LsR~Pt~~E~~~~~~~l~~ 266 (266)
T PF07587_consen 235 SDEERIEELYLRALSRPPTAAELAAAREFLQE 266 (266)
T ss_pred CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhC
Confidence 34577899999999999999999988776544
No 88
>PRK00754 signal recognition particle protein Srp19; Provisional
Probab=31.30 E-value=69 Score=29.09 Aligned_cols=31 Identities=29% Similarity=0.607 Sum_probs=23.7
Q ss_pred cccccc-cceeEEECCccChHhHHHHhhhhcc
Q psy5568 282 HSRHWF-FKGKMIVDGIESDKCLFEMIMDTTK 312 (685)
Q Consensus 282 HCrhk~-F~~~~~idg~~~~~sL~~~i~~t~~ 312 (685)
|-|.|+ ..|++.||...+..+|+++|-...+
T Consensus 59 yPr~~~e~~GRv~V~~~~~K~~ll~~Ia~~I~ 90 (95)
T PRK00754 59 YPRSWWEVSGRVLVDKVGSKTNTLRMIAKEIK 90 (95)
T ss_pred CCchHhcCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 555555 6899999988888999999865443
No 89
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=27.51 E-value=1.1e+02 Score=35.79 Aligned_cols=56 Identities=23% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCHHHHHHHHHhcCCCCChhhHHHHHHHHHhh--cCCCCcHHHHHhhhhhhccccccc
Q psy5568 231 KGKVALQEVNQKLGLAFDEWDLEYYTDIFRNK--LKRNPTSVECFDLAQSNSEHSRHW 286 (685)
Q Consensus 231 ~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~--l~R~PtdvEl~~~aq~wSEHCrhk 286 (685)
-|+.+++...+++|+.+++++++.+.+.+|+. .+|..||.||..+...--|.+..|
T Consensus 427 SG~~av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~~~~~~~~~~ 484 (503)
T PLN03228 427 SGRHAVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVVNGDEISSEK 484 (503)
T ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhcccccchhh
Confidence 36789999999999999999999999988642 367899999999887766665555
No 90
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=26.50 E-value=1.2e+02 Score=33.20 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=37.3
Q ss_pred CccccccceeeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC
Q psy5568 376 GATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI 449 (685)
Q Consensus 376 GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~ 449 (685)
|.-|=+.= +.|+.+| |++|++-++...--+ + -..++|+.+.-.|+..||-.
T Consensus 76 G~csvLVn-~~DV~am--GG~Pv~~vd~isa~s----------~----------d~~~ei~eglr~~a~kfgvp 126 (324)
T COG2144 76 GYCSVLVN-VNDVAAM--GGEPVGAVDAISAKS----------E----------DQAREILEGLRKGARKFGVP 126 (324)
T ss_pred hceeEEEe-ehhhhhh--CCcceEEEEeeecCC----------H----------HHHHHHHHHHHHHHHhcCCc
Confidence 44444553 8899999 999999988875211 1 24788999999999998544
No 91
>COG2860 Predicted membrane protein [Function unknown]
Probab=26.19 E-value=17 Score=37.34 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=20.8
Q ss_pred CCCCccccCCCCcccccc-ceeeeecc
Q psy5568 365 HNFPTGVSPFSGATTGTG-GRIRDVQA 390 (685)
Q Consensus 365 HNhPsai~Pf~GAaTG~G-G~iRD~~~ 390 (685)
++|+--+.=+-|.-||+| |++||+++
T Consensus 115 ~g~~p~~aiv~gvlTgvgGGvlRDvla 141 (209)
T COG2860 115 AGHGPLIAVVAGVLTGVGGGVLRDVLA 141 (209)
T ss_pred cCCCchhhhhhhhhhcccchhHHHHHc
Confidence 445556777889999995 68999998
No 92
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=25.91 E-value=80 Score=24.79 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=27.3
Q ss_pred CCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhh
Q psy5568 246 AFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSN 279 (685)
Q Consensus 246 al~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~w 279 (685)
-++.+.++.+.++|. ....|+..|+..||..=
T Consensus 6 ~~t~~q~~~L~~~f~--~~~~p~~~~~~~la~~l 37 (57)
T PF00046_consen 6 RFTKEQLKVLEEYFQ--ENPYPSKEEREELAKEL 37 (57)
T ss_dssp SSSHHHHHHHHHHHH--HSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--Hhccccccccccccccc
Confidence 468999999999994 38899999999998653
No 93
>PRK05783 hypothetical protein; Provisional
Probab=24.88 E-value=3.8e+02 Score=23.85 Aligned_cols=62 Identities=8% Similarity=-0.067 Sum_probs=42.0
Q ss_pred EEEEEccCCCCChHHH--HHHHhcCCC-CcceEEEEEEEEEecCCCCCH---HHHHHHH-hh-ccccccc
Q psy5568 89 AIIRYYSKPGIGAGEK--TKKLKAVPK-VISDIESELCYNIEISRELTP---VELDKLH-WI-LNSSFEC 150 (685)
Q Consensus 89 ~ml~l~G~~als~fr~--l~~l~~~~~-~V~~Vrte~vY~Vel~~~Ls~---ee~~~L~-~L-Ls~~~~~ 150 (685)
.+.+.+.++-|.+--. ++.|..++. .|.+||+-.++.+.++++-.+ ++.+.++ .| |++|+..
T Consensus 6 ~V~V~lK~gVlDPqG~aI~~aL~~lg~~~V~~VRvGK~iel~l~~~~~e~a~~~v~~mc~~LrLaNpVIe 75 (84)
T PRK05783 6 ELIIINKDSVRDPEGETIQRYVIERYTGNIIEVRAGKYLVFKIEANSPEEAKELALKIAREGRLYNPIVH 75 (84)
T ss_pred EEEEEECCCCcCchHHHHHHHHHHcCCCCcceEEeeEEEEEEEcCCCHHHHHHHHHHHHHhcCcCCceeE
Confidence 3556667777777666 677766544 699999999998887654222 2333443 57 9998754
No 94
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=24.12 E-value=30 Score=29.68 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=32.2
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHH
Q psy5568 232 GKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVE 271 (685)
Q Consensus 232 ~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvE 271 (685)
+...|.++++.+|+.|+.+|.+.+-.+....++|.|..-|
T Consensus 12 G~~~l~~l~~~~~~~l~~~~~~Tl~G~i~~~l~~iP~~Ge 51 (81)
T PF03471_consen 12 GSTPLDDLNELLGLDLPEEDYDTLGGLILEQLGRIPEVGE 51 (81)
T ss_dssp TTSBHHHHHHHHTS-TTTTTTSBHHHHHHHHHTSS--TTS
T ss_pred ecCCHHHHHHHHCcCCCccchhhHHHHHHHHcCCCCCCCe
Confidence 5567899999999999999999998888889999999655
No 95
>PTZ00323 NAD+ synthase; Provisional
Probab=22.82 E-value=1e+02 Score=33.37 Aligned_cols=35 Identities=31% Similarity=0.282 Sum_probs=30.2
Q ss_pred CChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhccccccc
Q psy5568 247 FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHW 286 (685)
Q Consensus 247 l~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk 286 (685)
++-++++.+..+|. ++ ++.|...+-++||+|.|+.
T Consensus 235 ~~Y~~lD~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~ 269 (294)
T PTZ00323 235 FPYDFVELYTEWYL-KL----NETEKKSFLSSLSEEARKQ 269 (294)
T ss_pred CCHHHHHHHHHHHH-Hh----hHHHHHHHHHhcCHHHHHH
Confidence 57888999998885 34 8999999999999999997
No 96
>PF07583 PSCyt2: Protein of unknown function (DUF1549); InterPro: IPR011444 The function is not known. It is found associated with IPR022655 from INTERPRO. It is also found associated with the Planctomycete cytochrome C domain IPR011429 from INTERPRO.
Probab=22.30 E-value=1.6e+02 Score=30.42 Aligned_cols=51 Identities=20% Similarity=0.184 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCCCh--hhHHHHHHHHHhhcCCCCcHHHHHhhhhhhccccccc
Q psy5568 236 LQEVNQKLGLAFDE--WDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHW 286 (685)
Q Consensus 236 L~~~~~~~gLal~~--~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk 286 (685)
+.+--++.||..++ +|..+|+..+.+..||.||..|+..|-..-|..=|.+
T Consensus 7 v~~~l~~~gl~ps~~add~~~lRRv~LDL~G~~PT~eEv~~Fl~d~~~~kr~~ 59 (208)
T PF07583_consen 7 VLAKLEKLGLTPSPPADDATFLRRVYLDLTGLPPTPEEVRAFLADPSPDKREK 59 (208)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHhCCChhHHHH
Confidence 34444556776554 6788999988888999999999999988666554444
No 97
>PF12818 Tegument_dsDNA: dsDNA viral tegument protein; InterPro: IPR024346 This entry represents the N-terminal domain of tegument proteins from double-stranded DNA herpesvirus.
Probab=21.46 E-value=1.1e+03 Score=25.67 Aligned_cols=135 Identities=12% Similarity=0.017 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeece-eeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCC
Q psy5568 516 AALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGT-MKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGY 594 (685)
Q Consensus 516 ~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdS-m~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~ 594 (685)
.++..++++=.+..+.. |+|+++|=.- +..+..+ .+...++...+..+.+.. ..++..-..+| +
T Consensus 58 ~~~~~~l~aq~~~l~~~----------GvPv~~GF~R~i~~~~~~-~~~~~~~~~~s~l~~~~~--~~l~~~~~~~g-~- 122 (282)
T PF12818_consen 58 RQITTALQAQARSLNAS----------GVPVVGGFIRPIDSHLSG-PVPLNVLTFTSILGSISQ--TNLNTARPRPG-Q- 122 (282)
T ss_pred HHHHHHHHHHHHHHhhc----------CCCccCcEeEEecCcccc-cccCceEEEEEEEcccch--hhhhccCCCCC-C-
Confidence 45667777777888888 9999999776 3212111 133333444455554432 23333333566 3
Q ss_pred cceEEEEEcCCCcCccchhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHH---cCCc-EEEEcCCcchHHHHHHHHH
Q psy5568 595 SSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQ---DGQV-LSGHDISDGGLLICLLEMD 670 (685)
Q Consensus 595 ~s~lv~i~lg~~~~~lGGS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~---~glv-~A~HDvSdGGL~~aLaEMa 670 (685)
.||.+ |.-... .+....+..--+......++.++++.+.+ ...| .+..+....=+...|.|.+
T Consensus 123 --~iv~L--G~F~p~---------~~~d~~p~~y~dS~~~~~~i~~aL~~f~~~~~~~cis~~~r~~~~~sv~~~L~aL~ 189 (282)
T PF12818_consen 123 --YIVCL--GDFEPT---------PGPDTPPYTYRDSGLEQNKILQALQQFYSTLESPCISGSIRPPGPASVKEHLLALC 189 (282)
T ss_pred --EEEEe--cCCccc---------CCCCCCCcccccCHHHHHHHHHHHHHHHHhcCCCcEEeecCCCCchhHHHHHHHhc
Confidence 56654 543221 11111122233456666777777776554 3433 3445556666777787776
Q ss_pred hcCCCCeEEE
Q psy5568 671 VGANSPKGWV 680 (685)
Q Consensus 671 ~ag~~G~~I~ 680 (685)
. .+|+.|+
T Consensus 190 ~--~~G~~l~ 197 (282)
T PF12818_consen 190 H--PGGARLD 197 (282)
T ss_pred C--CCceEEE
Confidence 5 5677664
No 98
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=21.16 E-value=75 Score=34.75 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=37.8
Q ss_pred hhhhcccccceeecC----cccccCCCCCCCCceEeeccCCC-HHHHHHHHHhcCCCCChhhHHHHH
Q psy5568 195 AESFYDRMTECVYSS----PLTSFNHGIKPDPWFYVDVMGKG-KVALQEVNQKLGLAFDEWDLEYYT 256 (685)
Q Consensus 195 ~~~L~d~mte~~~~~----~~~~f~~~~~p~~~~~v~l~~~~-~~~L~~~~~~~gLal~~~e~~~i~ 256 (685)
..+|+|+.+++-|+. |...-.-...|.|-++|.+...+ +++|+++++- |..+.+|++.+.
T Consensus 166 ~a~lynnl~~r~YPh~~~~p~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~--lDIdrddLe~ll 230 (382)
T COG3448 166 LALLYNNLTRRTYPHHWLSPPANLHGTADPPPSQRVGFSSEDLDAALQRLGET--LDIDRDDLERLL 230 (382)
T ss_pred HHHHHHHHhcCCCCCccCCCcccccCCCCCCchhccCCCHHHHHHHHHhcCce--ecCCHHHHHHHH
Confidence 457899999998886 22222221246678888775433 3455555544 466889998875
Done!