Query psy5568
Match_columns 685
No_of_seqs 416 out of 2030
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 20:50:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugj_A Phosphoribosylformylgly 100.0 4E-130 1E-134 1185.1 37.3 567 89-681 9-917 (1303)
2 3ac6_A Phosphoribosylformylgly 100.0 7.2E-64 2.5E-68 584.2 15.8 379 236-681 1-645 (725)
3 1vk3_A Phosphoribosylformylgly 100.0 5.2E-55 1.8E-59 500.9 7.0 170 456-680 410-580 (615)
4 1vk3_A Phosphoribosylformylgly 99.8 1.6E-19 5.5E-24 207.2 16.5 255 246-680 12-272 (615)
5 3vti_C Hydrogenase maturation 99.8 2E-19 6.8E-24 190.3 12.9 192 456-680 28-223 (314)
6 2rb9_A HYPE protein; hydrogena 99.8 1.3E-19 4.6E-24 193.3 11.4 189 457-680 50-243 (334)
7 2yxz_A Thiamin-monophosphate k 99.8 3.3E-19 1.1E-23 187.9 12.8 184 456-680 40-230 (311)
8 3fd5_A Selenide, water dikinas 99.8 2.4E-18 8.2E-23 187.8 18.7 191 456-680 82-291 (394)
9 2z1u_A Hydrogenase expression/ 99.8 3.6E-19 1.2E-23 190.5 11.9 189 457-680 50-244 (343)
10 2z01_A Phosphoribosylformylgly 99.8 7.7E-19 2.6E-23 188.2 14.3 195 458-680 59-271 (348)
11 2yyd_A Selenide, water dikinas 99.8 2.7E-18 9.1E-23 184.3 18.4 184 458-680 64-252 (345)
12 2z1e_A Hydrogenase expression/ 99.8 1.5E-18 5.2E-23 184.9 14.3 186 456-680 52-245 (338)
13 3u0o_A Selenide, water dikinas 99.8 1.7E-18 5.7E-23 186.0 12.7 187 456-680 61-251 (347)
14 3ac6_A Phosphoribosylformylgly 99.8 8.4E-18 2.9E-22 196.3 19.1 202 456-680 78-283 (725)
15 2btu_A Phosphoribosyl-aminoimi 99.7 5.9E-18 2E-22 181.2 13.6 181 472-680 76-269 (346)
16 3mcq_A Thiamine-monophosphate 99.7 6E-17 2E-21 171.8 19.1 181 456-680 37-231 (319)
17 2zod_A Selenide, water dikinas 99.7 7E-17 2.4E-21 172.8 14.3 189 456-680 62-252 (345)
18 2v9y_A Phosphoribosylformylgly 99.7 3.6E-17 1.2E-21 174.7 11.8 180 473-680 49-243 (334)
19 3c9u_A Thiamine monophosphate 99.7 1.6E-16 5.5E-21 170.3 14.2 187 456-680 72-266 (342)
20 3m84_A Phosphoribosylformylgly 99.6 1.5E-15 5.1E-20 163.2 17.1 197 456-680 61-277 (350)
21 3p4e_A Phosphoribosylformylgly 99.6 2.9E-15 9.8E-20 161.0 13.4 181 473-680 84-273 (349)
22 3ugj_A Phosphoribosylformylgly 99.6 2.9E-16 9.9E-21 191.5 2.9 91 2-94 354-448 (1303)
23 3kiz_A Phosphoribosylformylgly 98.2 2.3E-05 7.7E-10 85.2 15.1 102 476-601 82-189 (394)
24 3mdo_A Putative phosphoribosyl 98.0 4.2E-05 1.4E-09 83.0 12.6 102 476-601 81-188 (389)
25 3u0o_A Selenide, water dikinas 96.6 0.00031 1.1E-08 75.1 -0.5 94 278-407 12-109 (347)
26 3mcq_A Thiamine-monophosphate 96.0 0.00056 1.9E-08 72.2 -2.2 69 316-408 18-91 (319)
27 2yyd_A Selenide, water dikinas 95.4 0.0012 4E-08 70.6 -2.6 70 314-408 42-111 (345)
28 2yxz_A Thiamin-monophosphate k 93.6 0.0069 2.4E-07 63.3 -2.1 81 300-406 8-92 (311)
29 2zod_A Selenide, water dikinas 93.5 0.0076 2.6E-07 64.0 -1.9 99 273-407 12-110 (345)
30 3c9u_A Thiamine monophosphate 91.8 0.024 8.3E-07 60.4 -0.8 60 323-407 61-125 (342)
31 3fd5_A Selenide, water dikinas 90.8 0.042 1.4E-06 59.7 -0.2 67 319-408 65-132 (394)
32 1vq3_A Phosphoribosylformylgly 90.0 0.31 1.1E-05 42.7 4.6 30 164-193 18-47 (94)
33 2yx5_A UPF0062 protein MJ1593; 89.6 0.37 1.3E-05 41.0 4.7 28 165-192 5-32 (83)
34 2z1e_A Hydrogenase expression/ 89.2 0.1 3.5E-06 55.0 1.2 64 316-407 34-102 (338)
35 1t4a_A PURS; tetramer, complex 89.1 0.42 1.4E-05 40.7 4.7 29 165-193 5-33 (84)
36 1gtd_A MTH169; synthetase, FGA 87.8 0.51 1.8E-05 40.3 4.5 27 165-191 6-32 (85)
37 2zw2_A Putative uncharacterize 86.2 0.46 1.6E-05 41.3 3.3 29 164-192 8-36 (92)
38 2rb9_A HYPE protein; hydrogena 85.8 0.064 2.2E-06 56.7 -2.9 79 301-406 15-98 (334)
39 2dgb_A Hypothetical protein PU 84.9 0.94 3.2E-05 38.6 4.5 29 164-192 6-34 (84)
40 3vti_C Hydrogenase maturation 83.6 0.091 3.1E-06 55.0 -2.9 63 317-406 14-77 (314)
41 2z1u_A Hydrogenase expression/ 79.3 0.22 7.4E-06 52.8 -1.9 62 317-407 33-99 (343)
42 1gtd_A MTH169; synthetase, FGA 76.8 6.9 0.00024 33.2 7.2 61 90-150 7-73 (85)
43 2btu_A Phosphoribosyl-aminoimi 73.2 0.12 4.1E-06 54.7 -5.9 77 315-408 31-110 (346)
44 1t4a_A PURS; tetramer, complex 65.3 23 0.00079 29.8 7.8 60 90-150 6-72 (84)
45 2yx5_A UPF0062 protein MJ1593; 65.1 9 0.00031 32.3 5.2 61 90-150 6-73 (83)
46 1vq3_A Phosphoribosylformylgly 64.7 26 0.00087 30.5 8.1 69 82-150 12-87 (94)
47 2z01_A Phosphoribosylformylgly 59.3 2.2 7.5E-05 45.0 0.4 88 302-408 19-112 (348)
48 2zw2_A Putative uncharacterize 53.5 22 0.00074 30.6 5.7 61 90-150 10-78 (92)
49 2dgb_A Hypothetical protein PU 53.1 39 0.0013 28.4 7.2 61 90-150 8-73 (84)
50 3p4e_A Phosphoribosylformylgly 41.7 6.6 0.00022 41.6 0.6 89 300-408 23-117 (349)
51 2da7_A Zinc finger homeobox pr 23.3 61 0.0021 26.8 3.3 28 249-278 14-41 (71)
52 3llb_A Uncharacterized protein 22.6 30 0.001 28.7 1.3 41 232-272 15-55 (83)
53 2v9y_A Phosphoribosylformylgly 21.9 14 0.00046 38.8 -1.2 33 374-408 50-82 (334)
54 1wi3_A DNA-binding protein SAT 21.2 84 0.0029 26.0 3.7 32 246-278 13-44 (71)
55 3ktw_A SRP19, signal recogniti 21.1 1.1E+02 0.0036 27.4 4.6 31 282-312 68-98 (109)
56 2rk5_A Putative hemolysin; str 20.4 30 0.001 28.9 0.9 40 232-271 14-53 (87)
57 3lae_A UPF0053 protein HI0107; 20.1 31 0.0011 28.4 1.0 40 232-271 15-54 (81)
No 1
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=100.00 E-value=4e-130 Score=1185.06 Aligned_cols=567 Identities=34% Similarity=0.552 Sum_probs=521.5
Q ss_pred EEEEEccCCCCChHHH---HHHHhcCCCCcceEEEEEEEEEecCCCCCHHHHHHHHhhccccccccccCCCCccCCCCcE
Q psy5568 89 AIIRYYSKPGIGAGEK---TKKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNV 165 (685)
Q Consensus 89 ~ml~l~G~~als~fr~---l~~l~~~~~~V~~Vrte~vY~Vel~~~Ls~ee~~~L~~LLs~~~~~~~~~~~s~l~~~~~~ 165 (685)
.|++|+|.+|||+||. +++|++..+.|.+|+++|||+|+++++|++++.++|.|||++..... .. ...+.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~---~~---~~~~~~ 82 (1303)
T 3ugj_A 9 MMEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPALS---SH---TPAGKL 82 (1303)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHHHHTTCCCCEEEEEEEEEEEESSCCCHHHHHHHHHHTCCSCCCC---CC---CCCSEE
T ss_pred eEEEeCCCccCCHHHHHHHHHHHHhcCCCccEEEEEEEEEEecCCCCCHHHHHHHHHHhcCCcccc---cc---CCCcce
Confidence 4889999999999998 88899988999999999999999888999999999999999753221 00 112467
Q ss_pred EEEecCCCcCChhhhhHHHHHHHcCcch------------------------hhhhhcccccceeecC---cccccCCCC
Q psy5568 166 IEVGPRLNFSTPFCSNVLSICQSIQLHS------------------------CAESFYDRMTECVYSS---PLTSFNHGI 218 (685)
Q Consensus 166 ieV~PR~G~~spwss~a~~i~~~~gl~~------------------------~~~~L~d~mte~~~~~---~~~~f~~~~ 218 (685)
++|+||+||+|||||||++|+|+|||.. +..+|||||||+++.. +..+|.+.
T Consensus 83 ~~v~pr~g~~spwss~a~~i~~~~gl~~v~rie~~~~~~~~~~~~~~~~~~~~~~~l~d~m~e~~~~~~~~~~~lf~~~- 161 (1303)
T 3ugj_A 83 LLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEASTLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHH- 161 (1303)
T ss_dssp EEEEECTTCCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEECTTCCHHHHHHHHHHTSCTTTEEEESSGGGGGGGGCCC-
T ss_pred EEEEcCCCcCChhHHHHHHHHHHcCCcccceEEEEEEEEEecCCCCHHHHHHHHHhcCCCCccEEecCchhhhhhcccC-
Confidence 9999999999999999999999999953 4468999999999876 57889865
Q ss_pred CCCCceEeeccCCCHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCcc
Q psy5568 219 KPDPWFYVDVMGKGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIE 298 (685)
Q Consensus 219 ~p~~~~~v~l~~~~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~ 298 (685)
+|+|+.+||+++.++++|+++|+++||||+++||+||++|| +.|||+|||+||+||+|+||||||||+||++|+|||++
T Consensus 162 ~p~~~~~v~~~~~~~~~L~~~~~~~gLaL~~~e~~~i~~~f-~~lgR~Pt~~El~~~~~~wSEHCrhk~f~~~~~id~~~ 240 (1303)
T 3ugj_A 162 QPAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAF-TKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKP 240 (1303)
T ss_dssp CCCCCCBCCHHHHTTHHHHHHHHHTTCCCCHHHHHHHHHHH-HHHTSCCBHHHHHHHHHHTSHHHHCHHHHSEEEETTEE
T ss_pred CCCceeEEeCCCCCHHHHHHHHhcCCCCCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHhhhhccccccCCceEEcCcc
Confidence 89999999999999999999999999999999999999999 58999999999999999999999999999999999999
Q ss_pred ChHhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCcc
Q psy5568 299 SDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGAT 378 (685)
Q Consensus 299 ~~~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAa 378 (685)
++++||+||++|++..++++|++|+||||||++.. ..+|.|+.. ...|+.++++|+++||||||||||+||||+|||
T Consensus 241 ~~~~l~~~i~~t~~~~~~~~~~~~~dna~vi~~~~-~~~~~~~~~--~~~~~~~~e~~~v~fK~ETHNHPsaIePf~GAa 317 (1303)
T 3ugj_A 241 QPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSA-VGRYFADHN--TGRYDFHQEPAHILMKVETHNHPTAISPWPGAA 317 (1303)
T ss_dssp ESSCHHHHHHHHHHHCCTTEEECSSSSSEEEEEEE-EEEEEECTT--TCBEEEEEEEEEEEEEEEECHHHHHHCHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCcEEEEecCccEEeeecc-cccccccCC--ccccccccceeEEEEEEeccCCCCccCCcCccc
Confidence 99999999999999889999999999999999865 677887532 236888999999999999999999999999999
Q ss_pred ccccceeeeecccCCCCeeeecccceEeccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCC--CC-----
Q psy5568 379 TGTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI--EP----- 451 (685)
Q Consensus 379 TG~GG~iRD~~~~GrGa~pia~~~~~~~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~--~P----- 451 (685)
||+||+|||+++|||||||||++++||||+|++|++.+|||+ .+++|.++++|++||++++.|+++|||+ +|
T Consensus 318 TGvGG~iRD~~~~G~GarPiA~~~~~~~~~lr~~~~~~p~e~-~~g~p~~~~~~~~i~~~g~~G~s~ygN~~Gvp~V~G~ 396 (1303)
T 3ugj_A 318 TGSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEE-DFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGY 396 (1303)
T ss_dssp HHHHHHHHHHHTSTTCCEEEEEEEEEEESCCCCTTCCCTTCC-CCCCCTTSCCHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ceeEEEEEchhccCCCCEeeeeeeeeeeccccCCCCCCcccc-ccCCchhccChhhhhhcccchHHHHHHhcCCCCcceE
Confidence 999999999999999999999999999999999999999985 5899999999999999999999999988 54
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 452 -------------------------------------------------------------------------------- 451 (685)
Q Consensus 452 -------------------------------------------------------------------------------- 451 (685)
T Consensus 397 ~~~~~~~~~~~~~~~~~g~~kp~v~~~gvG~i~~~~~~~~~~~~Gd~Iiv~Gg~tgr~G~gGaa~sS~~~~~~~~~~~~~ 476 (1303)
T 3ugj_A 397 FRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGLGGGAASSMASGQSDADLDFA 476 (1303)
T ss_dssp EEECEEEEEETTEEEEEECSSCEEEEEEEEEECGGGSSCCCCCTTCEEEEEECCBCTTCC-----------------CGG
T ss_pred EEEEeeeccccccccccccCCceeEEEEEEEEehHHcccccCCCCCEEEEECCCCCcccCcHHHHhHHhhcccccccCch
Confidence
Q ss_pred -------------------CCC----------------------------------------------------------
Q psy5568 452 -------------------CSN---------------------------------------------------------- 454 (685)
Q Consensus 452 -------------------c~~---------------------------------------------------------- 454 (685)
|.+
T Consensus 477 ~VQ~g~p~~ek~~~~li~~~lel~~~~~V~a~~D~t~GGL~~~l~Ema~~sgvG~~Idld~vP~~~~gl~p~ei~~sesq 556 (1303)
T 3ugj_A 477 SVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGLSNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQ 556 (1303)
T ss_dssp GCCCCCHHHHHHHHHHHHHHHTTGGGCCEEEEEECCTTTHHHHHHHHHHHTTCEEEEEGGGSCBSCTTCCHHHHHHCCCS
T ss_pred hhccCCHHHHHHHHHHHHHHHHHhccCCeeEEEECCCcHHHHHHHHHHHHcCCeEEEEhhhCCCCccCCCHHHHHhCcCc
Confidence 000
Q ss_pred --------------------------------------------------------------------------------
Q psy5568 455 -------------------------------------------------------------------------------- 454 (685)
Q Consensus 455 -------------------------------------------------------------------------------- 454 (685)
T Consensus 557 erml~~V~pe~~~~~~~~~~~~g~~a~vIG~Vt~~~~v~l~~~~~g~~v~dlp~~~L~~~~p~~~~~~~~~~~~~~~~~~ 636 (1303)
T 3ugj_A 557 ERYVLAVAADQLPLFDELCKRERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGDALNR 636 (1303)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHTCCEEEEEEEESSCEEEEEETTTTEEEEEEEHHHHTCCCCCCEEEECCCCCCCCCCCC
T ss_pred ceEEEEECHHHHHHHHHHHHHcCCCeEEEEEEecCCeEEEEECCCCeEEEecchhhhcCCCCceeccccccCccccccCc
Confidence
Q ss_pred --------------------------------------------------C-----------ceeEEecccCCceeecCH
Q psy5568 455 --------------------------------------------------D-----------RAIATSIGEQPIKGLVDP 473 (685)
Q Consensus 455 --------------------------------------------------D-----------~G~A~s~G~~p~~~~~DP 473 (685)
| +|+|||+|++|+++.+||
T Consensus 637 ~~~~~~~~l~~vL~~pnvaSK~~l~~~~D~~V~g~tv~~~~vGp~q~p~~DaAVi~~~~~~~~gla~s~g~~p~~~~~dP 716 (1303)
T 3ugj_A 637 ADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVALLDF 716 (1303)
T ss_dssp TTCCHHHHHHHHTTSTTTSCCHHHHTTSCSCTTSCEEECSEETTTTEECCSSEEEESSTTCSCEEEEEEEECGGGGGTCH
T ss_pred CcCCHHHHHHHHhcCCcccchhhHHHhcCcccCcceeeeccccCCCCCCCCeEEEEEeCCCCeEEEEEEecCCCccccCH
Confidence 1 689999999999999999
Q ss_pred HHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHH-HHhhhhhcCCCccccCCeeeeeeece
Q psy5568 474 KRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMS-WVLPARMGNTRREWIKPIMFSGGIGT 552 (685)
Q Consensus 474 ~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~-d~c~~L~~~~~~~~~~gipivgGkdS 552 (685)
|+||++||+||++||+|+|+.|+..+++++|||||.++|++.++|+++++||+ |+|++| ||||+|||||
T Consensus 717 ~~ga~~AVaealsnlaA~Ga~pl~~v~lsln~~~~~g~P~~~~~L~~a~~g~~~d~c~~l----------gvpiiGGkdS 786 (1303)
T 3ugj_A 717 AASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGEDAGLYDAVKAVGEELCPQL----------GLTIPVGKDS 786 (1303)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCSGGGCEEEEEEECBTTSTTHHHHHHHHHHHHHTTHHHHH----------TCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhcCCCccHHHeEeecccccccCCCchHHHHHHHHHHHHHHHHHHc----------CCCeeecccc
Confidence 99999999999999999999999999999999999888999999999999999 999999 9999999999
Q ss_pred eeccc--c--C--CcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHHHhhhhcCCC
Q psy5568 553 MKHEL--K--E--KASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPS 626 (685)
Q Consensus 553 m~~~~--~--~--~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~~~~~~g~~~ 626 (685)
|||++ + | +.++.||||+|+++|.|+|+++++||++|++| +.|||||+|.++.+||||+|+|+++++++.+
T Consensus 787 lsn~t~~~~~g~~~~v~~P~TlvitavG~v~dv~~~vt~~~k~~G----d~LilV~lg~~~~~LGGS~la~~~g~~g~~~ 862 (1303)
T 3ugj_A 787 MSMKTRWQEGNEQREMTSPLSLVISAFARVEDVRHTLTPQLSTED----NALLLIDLGKGHNALGATALAQVYRQLGDKP 862 (1303)
T ss_dssp CBCEEEECCC--CEEEECCCEEEEEEEEEESCGGGCCCSCCCCSS----EEEEEEETTTTCCCCTTSHHHHHTTCCCSCC
T ss_pred CccceecccCCCcCccCCCCceEEEEEEECCCcCcccCcccCCCC----CEEEEEECCCCCCCccHHHHHHHhCcccCCC
Confidence 99864 2 2 24678999999999999999999999999998 3788999999999999999999999999999
Q ss_pred CCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEEe
Q psy5568 627 PDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWVK 681 (685)
Q Consensus 627 P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~~ 681 (685)
|++++++.++++++++++|+++|+|+|+||+|+|||++||+|||+++++|++|+.
T Consensus 863 P~vd~~~~lk~~~~~v~~li~~G~v~AahDvSdGGLa~aL~Ema~as~vG~~Idl 917 (1303)
T 3ugj_A 863 ADVRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDI 917 (1303)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCCSEEEECCTTHHHHHHHHHHHHHTSEEEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCeEEEEeCCCChHHHHHHHHHHhCCceEEEEe
Confidence 9996699999999999999999999999999999999999999999999999863
No 2
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=7.2e-64 Score=584.15 Aligned_cols=379 Identities=22% Similarity=0.296 Sum_probs=305.5
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHhHHHHhhhhccccC
Q psy5568 236 LQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSN 315 (685)
Q Consensus 236 L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~~~~ 315 (685)
++++++++|| +++|++||+++ |||||||+||+||+|+|||||||| +++++|+++. ..+
T Consensus 1 ~~~~~~~~~l--~~~e~~~~~~~----l~r~pt~~El~~~~~~wsehc~~k------------~~~~~~~~~~----~~~ 58 (725)
T 3ac6_A 1 MEALAKEIGI--PEGEYREIVQR----LGREPNRVELLLFKVMWSEHCAYK------------NSRPLLKALP----KEG 58 (725)
T ss_dssp CHHHHHHHTC--CHHHHHHHHHH----HTSCCCHHHHHHHHHHTSHHHHCT------------TTHHHHTTSC----CCC
T ss_pred CcchHhHcCC--CHHHHHHHHHH----hCCCCCHHHHHHHhhhhhhhhcCC------------CCHHHHhcCC----CCC
Confidence 3678888877 89999999975 499999999999999999999999 6788988763 246
Q ss_pred CCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCC
Q psy5568 316 QNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGG 395 (685)
Q Consensus 316 ~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa 395 (685)
++++++++|||++++.. +++.++||+||||||++++||.||.||++|.+||+.+| ||
T Consensus 59 ~~v~~g~gdDaavi~~~---------------------~~~~l~~~ve~h~~p~~~~P~~gg~~~v~~~l~Di~am--GA 115 (725)
T 3ac6_A 59 EAVLQGPGENAGVVRVG---------------------EGWAVAFKIESHNHPSAVEPFQGAATGVGGILRDIMSM--GA 115 (725)
T ss_dssp TTEEECTTSSSEEEEEE---------------------TTEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHT--TC
T ss_pred CceEEecCCceEEEEeC---------------------CCeEEEEEeCcCCCCcccChHHHHHHHHhhhhhhhhcc--CC
Confidence 78999999999999953 35799999999999999999999999999999999999 99
Q ss_pred eeeecccceEeccCCCCC---------------------------------CC-CCCC---------ccc----CCCCCC
Q psy5568 396 NCIAGTAGYCVGNLNIPG---------------------------------YK-LPWE---------DEQ----YGYPNN 428 (685)
Q Consensus 396 ~pia~~~~~~~g~l~ip~---------------------------------~~-~pwe---------~~~----~~~p~~ 428 (685)
+|++.+++|+|+++..|. +. .|+- ... ...|++
T Consensus 116 ~P~~~l~~l~~~~~~~~~~~~~l~~~~~Gi~~~~~~~G~~lvgG~t~~~~~~~~~~~i~~~~vG~v~~~~~~~~~a~~GD 195 (725)
T 3ac6_A 116 RPIALLDSLRFGPPEEARSRYLLKGVVSGIAFYGNAIGVPTVGGDLYFHEGYRENPLVNAMCLGLLREEHLKRSRASLGR 195 (725)
T ss_dssp EEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECGGGSSSCEEEEEEEEEEEGGGCCCBCCCTTC
T ss_pred hhHhheeeEEcCCCCCccHHHHHHHHHHHHHHHHHHhCCCeeEEEEEEeCCcCCCceEEEEEEEEeChhhcccCCCCCCC
Confidence 999999999999865320 00 1220 000 000100
Q ss_pred ------------------Cc------------------chH---HH---HHH-----hcccccCC---------------
Q psy5568 429 ------------------FA------------------TPL---NI---LIE-----ASNGASDY--------------- 446 (685)
Q Consensus 429 ------------------~~------------------~~~---~i---~~~-----~~~G~s~Y--------------- 446 (685)
++ .|+ .+ +++ ...++.|-
T Consensus 196 ~ii~~G~~~g~~G~gg~~~~~~~~~~~~~~~~p~v~~g~~~~e~~~~~~~~~l~~~~~i~a~~Di~~gGL~~~l~ema~~ 275 (725)
T 3ac6_A 196 PIYYAGAKTGRDGIGGAAFASRELKEEKAEDRPAVQVGDPFLGKLLMEATLEAIELDLVEGVQDMGAAGLTSSLSELAHK 275 (725)
T ss_dssp EEEEEESCBCSCCC----------------------CCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCCcchHHHHHHHhhccccccCCcccccCCHHHHHHHHHHHHHHHhcCCeeEEEeCCCChHHHHHHHHHHh
Confidence 00 000 00 000 01111221
Q ss_pred CCC--------CC-------------------------------------------------------------------
Q psy5568 447 GNI--------EP------------------------------------------------------------------- 451 (685)
Q Consensus 447 gN~--------~P------------------------------------------------------------------- 451 (685)
++. +|
T Consensus 276 sg~g~~i~l~~vP~~~~~~~~~e~~~se~q~~ll~~v~~~~~~~~~~~~~~~~~~~~vIG~vt~~~~~~~~~~g~~~~d~ 355 (725)
T 3ac6_A 276 SGLGVELHLDLVPTREEGMTPEELLLSESQERMVLVPKEGKEKALEEVFGRWGLDCVPVARTIPERVFRVLFRGEVVAEV 355 (725)
T ss_dssp TTSEEEEEGGGSCBSSSSCCHHHHHHCCCSSEEEEEECTTCHHHHHHHHHHTTCCEEEEEEEESSSEEEEEETTEEEEEE
T ss_pred cCCeEEEEeccCCCCcCCCCHHHHHhcCCcCcEEEEEChHHHHHHHHHHHHcCCCEEEEEEEEeCCeEEEEECCcEEEEc
Confidence 000 11
Q ss_pred ----------------------------C-C---C---------------------------------------C-----
Q psy5568 452 ----------------------------C-S---N---------------------------------------D----- 455 (685)
Q Consensus 452 ----------------------------c-~---~---------------------------------------D----- 455 (685)
- . + |
T Consensus 356 ~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~v~sK~~i~~~~D~~v~~~tv~~pg~~DaaVi~ 435 (725)
T 3ac6_A 356 PTEALAEAPTYVRVGREDPEVRRLRETPIPPLEADPQEVLRRLLASPNLASREAVYERYDHQVGTRTALLPGKGDAAVLW 435 (725)
T ss_dssp EHHHHHSCCCCCCCCCCCHHHHHHHTSCCCCCCCCHHHHHHHHHTSTTTSCCHHHHTTCCCCBCSSEEECCSCCSSEEEE
T ss_pred CHHHHhcCCcccccccCccccccccccccCCCccCHHHHHHHHhcCCCccCchhHHHhhccccCCceeecCCCCceEEEE
Confidence 0 0 0 1
Q ss_pred -----ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhh
Q psy5568 456 -----RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLP 530 (685)
Q Consensus 456 -----~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~ 530 (685)
+++|+++|++|+++.+|||.+|++||+||++||+++|++|+..+++ +||+.|++ |+.+++|+++++||+++|+
T Consensus 436 ~~~~~~~la~s~d~~~~~~~~dP~~~g~~AVaeav~di~a~Ga~Pl~~~~~-l~~g~~~~-~~~~~~l~~~v~Gi~~a~~ 513 (725)
T 3ac6_A 436 IKGTRLGVAAKVDQNPRYSRLHPRLGAMHALAEACRNVSVVGAKPLAYTDG-LNLGSPET-PEGYHELAETIAGLKEASE 513 (725)
T ss_dssp ETTSSEEEEEEEECCHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EECSCSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred eCCCCeEEEEEEcCCCCeeeeCHHHHHHHHHHHHHHHHHHcCCcceEEEEE-EEcCCCCC-hhHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999999996655 79988744 5557899999999999999
Q ss_pred hhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc
Q psy5568 531 ARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV 610 (685)
Q Consensus 531 ~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l 610 (685)
++ |+|++|||+||||++.+ ..++||++++++|.++ .++.+|++++++| | .|+++ +....++
T Consensus 514 ~~----------gv~ivgG~ts~~~~~~~--~~i~ptl~i~~vG~v~-~~~~i~~~~~~~G-D---~lil~--g~~g~~~ 574 (725)
T 3ac6_A 514 AL----------GVPVVSGNVSLYNESGG--KRIPPTAMVGVVGVLE-VDKRAEMGFRRPG-E---VLLLI--GEERGEL 574 (725)
T ss_dssp HH----------TCCEEEEEEECCCEETT--EECCCEEEEEEEEEEE-GGGCCBSSCCSTT-C---EEEEE--SCSCCBC
T ss_pred Hh----------CCCeeeeeeeecCCCCC--CccCCceEEEEEEEec-hhhccChhhCCCC-C---EEEEE--cCCCCCc
Confidence 99 99999999999998865 3667999999999997 7889999999999 5 55554 7777899
Q ss_pred chhHHHH-HhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEEe
Q psy5568 611 GGSALSQ-VLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWVK 681 (685)
Q Consensus 611 GGS~la~-~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~~ 681 (685)
|||.|++ ++++.++..|++ |++.++.+++.+++|+++++|+|+||+|+|||+++|+|||+++++|++|+.
T Consensus 575 ggs~l~~~~~~~~~~~~p~~-d~~~~~~~~~~v~~l~~~~~v~a~~Dis~GGL~~~L~ema~~~~~G~~i~~ 645 (725)
T 3ac6_A 575 GASEVLYLLTGKEFGHPPRL-DLGREKAVQEAIRDLIQRGLTRTAHDVAEGGLLLALAEMTFPYGVGATVEV 645 (725)
T ss_dssp TTCHHHHHHHSCCCSCCCCC-CHHHHHHHHHHHHHHHHTTSCSBEEECCTTHHHHHHHHTTTTTCCCEEEEC
T ss_pred cHHHHHHHHhcccCCCCCCC-CHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcHHHHHHHHHhcCCCcEEEEe
Confidence 9999988 578777778888 799999999999999999999999999999999999999999999999973
No 3
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=100.00 E-value=5.2e-55 Score=500.92 Aligned_cols=170 Identities=13% Similarity=0.099 Sum_probs=152.1
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
+|+++++|++|+++..|||.+|++||+||++||+|+|++|+.. .+++||+||++ |+ . +|+++++|+.++|++|
T Consensus 410 ~~~~~t~d~~~~~~~~dP~~~g~~Avaealsdl~A~Ga~p~~~-~~~l~~~~~~~-~~-~-~l~~~~~G~~~~~~~~--- 482 (615)
T 1vk3_A 410 GGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAI-TNCVNYGDPDV-DP-V-GLSAMMTALKNACEFS--- 482 (615)
T ss_dssp EEEEEEEECCHHHHTTCHHHHHHHHHHHHHHHHHHTTCEEEEE-EEEEECSCTTT-CH-H-HHHHHHHHHHHHHHHH---
T ss_pred cEEEEEecCCCcccccCHHHHHHHHHHHHHHHHHHcCCcccee-EEEEecCCCCC-ch-H-HHHHHHHHHHHHHHHc---
Confidence 5899999999999999999999999999999999999999995 44589999976 55 4 9999999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|++||||||||++.+ +++|||++++++|.+++ ++++| +++| + |+++ |
T Consensus 483 -------g~~~igG~~S~~~~~~~--~~~ppt~~i~a~G~v~~-~~~~~---~~~G----d-l~l~--g----------- 531 (615)
T 1vk3_A 483 -------GVPVASGNASLYNTYQG--KPIPPTLVVGMLGKVNP-QKVAK---PKPS----K-VFAV--G----------- 531 (615)
T ss_dssp -------TCCEEEEEEECCCEETT--EECCCEEEEEEEEEECG-GGCCC---CCSE----E-EEEE--E-----------
T ss_pred -------CCCcccccccccCcCCC--CcCCCeeEEEEEEEecC-Ccccc---CCCC----e-EEEE--C-----------
Confidence 99999999999998754 57899999999999998 78787 7888 4 6655 2
Q ss_pred HHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcC-CcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDG-QVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~g-lv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.|.+ |++.++++++.+.++++++ +|.|+||||+| +|+|| + +++|++|+
T Consensus 532 ----------~~~~-~~~~~~~~~~~~~~~~~~~~~v~a~~DvSdG----~l~em-~-s~~g~~i~ 580 (615)
T 1vk3_A 532 ----------WNDF-ELEREKELWRAIRKLSEEGAFILSSSQLLTR----THVET-F-REYGLKIE 580 (615)
T ss_dssp ----------ESSC-CHHHHHHHHHHHHHHHHTTCEEECCTTSSCH----HHHHH-H-HHTTCEEE
T ss_pred ----------CCCC-CHHHHHHHHHHHHHHHhCCCeEEEEEECCCC----HHHHH-h-CCCcEEEE
Confidence 2445 7899999999999999999 99999999998 99999 8 99999885
No 4
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=99.81 E-value=1.6e-19 Score=207.20 Aligned_cols=255 Identities=15% Similarity=0.118 Sum_probs=195.9
Q ss_pred CCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhhhcccccccccceeEEECCccChHhHHHHhhhhccccCCCceeecccc
Q psy5568 246 AFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDN 325 (685)
Q Consensus 246 al~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~~~~~~~v~~~~dn 325 (685)
-|.++|+++|+ +.|||||||+||+||+|+|||||||| ++++||+++++ . +.+||
T Consensus 12 ~~~~~~~~~~~----~~l~r~pt~~el~~~~~~~sehc~~k------------~~~~~~~~~~~----~------g~gdD 65 (615)
T 1vk3_A 12 HMKLRYLNILK----EKLGREPTFVELQAFSVMWSEHCGYS------------HTKKYIRRLPK----T------GFEGN 65 (615)
T ss_dssp --CHHHHHHHH----HHHTSCCCHHHHHHHHHHTSHHHHCT------------TTHHHHHTSCB----C------TTSSS
T ss_pred hchHHHHHHHH----HhcCCCCCHHHHHHHhhhcCCccccC------------chHHHHhhccC----C------CCCCc
Confidence 35678877775 58999999999999999999999999 68899998743 1 12688
Q ss_pred cceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceE
Q psy5568 326 SSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYC 405 (685)
Q Consensus 326 a~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~ 405 (685)
|+||+..
T Consensus 66 Aavi~~~------------------------------------------------------------------------- 72 (615)
T 1vk3_A 66 AGVVNLD------------------------------------------------------------------------- 72 (615)
T ss_dssp TTEEESS-------------------------------------------------------------------------
T ss_pred eEEEEeC-------------------------------------------------------------------------
Confidence 8887710
Q ss_pred eccCCCCCCCCCCCcccCCCCCCCcchHHHHHHhcccccCCCCCCCCCCCceeEEecccCCceeecCHHHHHHHHHHHHH
Q psy5568 406 VGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNIEPCSNDRAIATSIGEQPIKGLVDPKRGARMAVAEAL 485 (685)
Q Consensus 406 ~g~l~ip~~~~pwe~~~~~~p~~~~~~~~i~~~~~~G~s~YgN~~Pc~~D~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl 485 (685)
+ +..++++++.+.+.+.+|||.+|+.+|++++
T Consensus 73 -------~-----------------------------------------~~~l~~t~e~h~~p~~~~P~~gg~~av~~~l 104 (615)
T 1vk3_A 73 -------D-----------------------------------------YYSVAFKIESHNHPSAIEPYNGAATGVGGII 104 (615)
T ss_dssp -------S-----------------------------------------SEEEEEEEEECHHHHHHCHHHHHHHHHHHHH
T ss_pred -------C-----------------------------------------CeEEEEEecccCCccccChhHHHHHHHHHHh
Confidence 0 0356888888888889999999999999999
Q ss_pred hhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeeceeeccccCCcccCC
Q psy5568 486 TNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNV 565 (685)
Q Consensus 486 ~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ip 565 (685)
||++++|++|+..+++ ++|+ ..|.++++|++++|+++ |+|++||++.....+.+ .
T Consensus 105 rDi~a~GA~P~a~l~~-l~~g---------~~l~~~~~Gi~~~~~~~----------GvplvGG~t~~~~~y~~-----~ 159 (615)
T 1vk3_A 105 RDVLAMGARPTAIFDS-LHMS---------RIIDGIIEGIADYGNSI----------GVPTVGGELRISSLYAH-----N 159 (615)
T ss_dssp HHHHHTTCEEEEEEEE-EEES---------SCCHHHHHHHHHHHHHH----------TCCEEEEEEEECGGGTT-----C
T ss_pred ccccccCceehhhhhh-hhHH---------HHHHHHHHHHHHHHHHc----------CCCEeEEEEEEecCCCC-----C
Confidence 9999999999987776 6663 24788999999999999 99999999985444432 3
Q ss_pred cceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCC--CcCccchhHHHH-Hh-hhh--cCCCCCcCCHHHHHHHH
Q psy5568 566 GSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSC--GQHRVGGSALSQ-VL-AEV--RGPSPDVEDAAALVRAF 639 (685)
Q Consensus 566 pTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~--~~~~lGGS~la~-~~-~~~--g~~~P~v~d~~~~k~~~ 639 (685)
|++.++++|.++. .+.++...+++| | .|+++ |. +...++|..++. .+ +.. ...++. .++..++++.
T Consensus 160 p~~~~~~vG~v~~-~~~~~~~~~~~G-D---~Iil~--G~~tg~~G~~g~~~~~~~~~~~~~~~~~v~~-~~~~~e~~~~ 231 (615)
T 1vk3_A 160 PLVNVLAAGVVRN-DMLVDSKASRPG-Q---VIVIF--GGATGRDGIHGASFASEDLTGDKATKLSIQV-GDPFAEKMLI 231 (615)
T ss_dssp CEEEEEEEEEEET-TSCCCSSCCSTT-C---EEEEE--ESCBCSCC----------------CGGGCCC-CCHHHHHHHH
T ss_pred ceEEEEEEEEEcH-HHccCccCCCCc-C---EEEEE--CCCCCCCcccHHHHHHHHhhcccccccccCc-CCHHHHHHHH
Confidence 7899999999974 677888888899 5 56665 43 223355554432 22 211 112333 3788888999
Q ss_pred HHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 640 NVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 640 ~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+.+.+++++++|.++||+|.|||+.+|.|||.++++|++|+
T Consensus 232 ~~~~~l~~~~~i~a~~Dis~gGL~~~l~ema~~sg~G~~Id 272 (615)
T 1vk3_A 232 EAFLEMVEEGLVEGAQDLGAGGVLSATSELVAKGNLGAIVH 272 (615)
T ss_dssp HHHHHHHHHTCCSEEEECCTTHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHhcCCeeEEEeCCCccHHHHHHHHHHhCCceEEEE
Confidence 99999999999999999999999999999999999999986
No 5
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=99.80 E-value=2e-19 Score=190.25 Aligned_cols=192 Identities=11% Similarity=0.004 Sum_probs=138.9
Q ss_pred ceeEEecccC---CceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhh
Q psy5568 456 RAIATSIGEQ---PIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPAR 532 (685)
Q Consensus 456 ~G~A~s~G~~---p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L 532 (685)
..++++++.. |++. +|+..|+.||+++++||+++|++|+..+++ ++| |++. +.++|.+.+++|.++|+++
T Consensus 28 ~~l~~t~D~~v~~~~~~--~~~~iG~~ava~~~sDiaamGA~P~~~~~~-l~~--p~~~--~~~~l~~i~~Gi~~~~~~~ 100 (314)
T 3vti_C 28 GNITLTTDSFTVKPLFF--PGGDIGKLAVCGTVNDASMRGAKPLFLTAA-FII--EEGF--PVEDLKKIVKSMAEAAKEA 100 (314)
T ss_dssp TTEEEEEEEECCSSSEE--TTEEHHHHHHHHHHHHTTTTTEEEEEEEEE-EEE--ETTC--CHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEecCCccCCccc--CccHHHHHHHHHHHHHHHHcCCccceeEEE-EEc--CCCC--CHHHHHHHHHHHHHHHHHc
Confidence 3578999977 7774 889999999999999999999999986654 454 6553 2588999999999999999
Q ss_pred hcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccch
Q psy5568 533 MGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGG 612 (685)
Q Consensus 533 ~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGG 612 (685)
|+|++||+++.+++.. .-.|++.++++|.+++ .+.+++...++| | +|++ .+.. ...|
T Consensus 101 ----------g~~lvGGdt~~~~~g~----~~~~~i~~t~vG~v~~-~~~~~~~~a~~G-D----~i~~-tg~~--G~~~ 157 (314)
T 3vti_C 101 ----------GVKIVAGDTKVVEKGS----VDRIFINTSGIGVLYE-GANVSIKNAKPG-D----IVLI-SGTI--GDHG 157 (314)
T ss_dssp ----------TCEEEEEEEEEECTTS----BSSEEEEEEEEEEECT-TCCCCTTCCCTT-C----EEEE-SSCS--SHHH
T ss_pred ----------CCeEEeeeeEEccCCC----cCCeEEEEEEEEEECC-CccccccCCCCC-C----EEEE-ECCh--HHHH
Confidence 9999999999876321 1257889999999986 567888888999 6 5555 3321 2223
Q ss_pred hHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHc-CCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 613 SALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQD-GQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 613 S~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~-glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
..+........ ..+.++. ..+.+...+.++++. +.|.|+||+|+|||+.+|.|||+++++|++|+
T Consensus 158 ~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~l~~~~~~v~a~~DiS~GGL~~~L~e~a~~sgvg~~I~ 223 (314)
T 3vti_C 158 MAVMSAREELQ-FDTPIFS--DVAPLNGLIEKLMTLGEAIKVLRDPTRGGVAEVLYEISKMSGVGIKIY 223 (314)
T ss_dssp HHHHHHHTTCC-CSSCCCC--CCCCCHHHHHHHGGGGGGEEEEECCCTTHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHhhcCCC-cchhhHH--hhccHHHHHHHHHhccCCcEEEEeCCCcHHHHHHHHHHHHcCCeEEEe
Confidence 33433322111 1122210 011111223445544 68999999999999999999999999999987
No 6
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=99.79 E-value=1.3e-19 Score=193.29 Aligned_cols=189 Identities=11% Similarity=0.029 Sum_probs=137.2
Q ss_pred eeEEecccCCceeecCHH-----HHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 457 AIATSIGEQPIKGLVDPK-----RGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 457 G~A~s~G~~p~~~~~DP~-----~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
.++++++..+ .||+ ..|+.||+++++||+|+|++|+..+++ ++| |++.+ .++|.+.+++|.++|++
T Consensus 50 ~l~~t~D~~~----~dp~~~~~~~iG~~ava~~lsDlaamGA~P~~~~~~-l~~--p~~~~--~~~l~~i~~Gi~~~~~~ 120 (334)
T 2rb9_A 50 RLAFSTDSYV----IDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCG-FIL--EEGLP--METLKAVVTSMAETART 120 (334)
T ss_dssp EEEEEEEEEC----CSSSEETTEEHHHHHHHHHHHHHHTTTCCCCEEEEE-EEE--ETTCC--HHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCcc----cCCccCCcccHHHHHHHHHHHHHHHCCCchHHhEEE-Eec--CCCCC--HHHHHHHHHHHHHHHHH
Confidence 6888888764 3554 569999999999999999999986654 454 75532 37899999999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++.+++.. . -+|++.++++|.+++ .+.+++..+++| | +|++ .|.. ...
T Consensus 121 ~----------g~~lvGGdt~~~~~g~---~-~~~~i~~t~vG~v~~-~~~~~~~~a~~G-D----~Iiv-tg~~--G~~ 177 (334)
T 2rb9_A 121 A----------GIAIVTGDTKVVQRGA---A-DKLFINTAGMGAIPT-NIHWGAQTLTAG-D----ILLV-SGTL--GDH 177 (334)
T ss_dssp T----------TCEEEEEEEEEECTTS---B-SSEEEEEEEEEEECT-TCCCCGGGCCTT-C----EEEE-SSCS--SHH
T ss_pred c----------CCEEEeeEeEEccCCC---C-CceEEEEEEEEEECc-ccccccccCCCC-C----EEEE-ECCc--hHH
Confidence 9 9999999999776321 1 168999999999976 455676667899 6 5555 3322 222
Q ss_pred hhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 612 GSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 612 GS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+.+......+. ..+.+. +..+.+.+.++++++++.|.|+||+|+|||+.+|.|||.++++|++|+
T Consensus 178 g~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~l~~~~~v~a~~Dis~GGL~~~l~ema~~s~vg~~i~ 243 (334)
T 2rb9_A 178 GATILNLREQLG-LDGELV--SDCAVLTPLIQTLRDIPGVKALRDATRGGVNAVVHEFAAACGCGIEIS 243 (334)
T ss_dssp HHHHHHHHHTCS-CTTTCC--CCCCCCHHHHHTTTTCTTEEEEEECCTTHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhhccCC-CChHHH--HhhhhhHHHHHHHHhcCCeEEEEECCCccHHHHHHHHHHHcCCeEEEe
Confidence 455554432221 122221 112223344556666788999999999999999999999999999987
No 7
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=99.79 E-value=3.3e-19 Score=187.93 Aligned_cols=184 Identities=14% Similarity=0.012 Sum_probs=130.8
Q ss_pred ceeEEecccCCc----eeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 456 RAIATSIGEQPI----KGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 456 ~G~A~s~G~~p~----~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
.+++++++..+. +...||+.+|+.||+++++||+++|++|+..+ ++|++|++. + .++|.+++++|.++|++
T Consensus 40 ~~lv~ttD~~~~~~~f~~~~~p~~~G~~ava~~lsDlaa~Ga~P~~~~---~~~~~p~~~-~-~~~l~~~~~Gi~~~~~~ 114 (311)
T 2yxz_A 40 RAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPLGFT---LGLFLPEDL-E-EGFVLELVRGAAEAAKR 114 (311)
T ss_dssp EEEEEEEEEEEHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTEEEEEEE---EEEEECTTC-B-HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCcCCCccccCCCCCHHHHHHHHHHHHHHHHHHcCChhhhhe---eeEeCCCCC-C-HHHHHHHHHHHHHHHHH
Confidence 679999999887 67899999999999999999999999998654 458999774 3 48899999999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++.. + ++++.+ +|.+++.+ .++ ..+++| | +|++ .+......+
T Consensus 115 ~----------g~~lvGG~t~~~--------~-~~~i~~--tG~v~~~~-~~~-~~a~~G-D----~i~~-~g~~~G~~~ 165 (311)
T 2yxz_A 115 L----------GAFLLGGDTNRG--------V-EVALTV--SGYALAEA-PLP-RKALPG-D----LLYL-AGDRWGRTG 165 (311)
T ss_dssp T----------TCEEEEEEEEEC--------S-SCEEEE--EEEEEESS-CCC-SCCCTT-C----EEEE-ESSCTTHHH
T ss_pred c----------CCeEEceecCCC--------C-CcEEEE--EeeeCCCC-ccc-cCCCCC-C----EEEE-eCCCcchHH
Confidence 9 999999999842 1 344444 49987643 466 557899 5 4444 242323333
Q ss_pred hhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHH---HHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 612 GSALSQVLAEVRGPSPDVEDAAALVRAFNVTQ---RLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 612 GS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~---~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
++..+.. ...+ .+. ......+...-.. ++++++.|.|+||+|+ ||+.+|.|||. +++|++|+
T Consensus 166 ~~~~~~~-~~~~---~~~-~~~~~~~~~~p~~~~~~~l~~~~v~a~~DiSd-GL~~~l~ema~-s~~g~~i~ 230 (311)
T 2yxz_A 166 AAIRAHY-EGRS---LEG-FPKIREAAFYPLPRLELLALSGLLRGSLDSSD-GLAETLWQLAD-LGVGVEVE 230 (311)
T ss_dssp HHHHHHH-HTCC---CTT-CHHHHHHHHCCCCCGGGGGGTTTCSEEEEESS-CHHHHHHHHHT-TTCEEEEC
T ss_pred HHHHHHh-cCCC---cch-hHHHHHHHhCchhhHHHHHHhcCCEEEEeChH-HHHHHHHHHHH-cCCcEEEE
Confidence 3332221 1111 011 1111222221111 4566777899999998 99999999999 99999997
No 8
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=99.78 E-value=2.4e-18 Score=187.76 Aligned_cols=191 Identities=15% Similarity=0.135 Sum_probs=135.8
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCch--HHHHHHHHHHHHHHhhhhh
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGE--GAALFDACQAMSWVLPARM 533 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~--~~~L~~av~g~~d~c~~L~ 533 (685)
..++++++... ....|||..|+.||+.+++||+++|++|+..+..+++| |...+.+ .+.|.+.+++|.++|+++
T Consensus 82 ~~lv~ttD~f~-p~~~dP~~~G~~Ava~~lsDiaAmGA~P~~~~l~~l~~--p~~~~~~~~~~~l~~i~~Gi~~~~~~~- 157 (394)
T 3fd5_A 82 LSLVQTTDYIY-PIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGV--SNKMTDRERDKVMPLIIQGFKDAAEEA- 157 (394)
T ss_dssp CEEEEEEEEEC-CCSSCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEEEEE--ETTSCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred cEEEEEeeccC-CcCCCHHHHHHHHHHHHHHHHHHCCchhHHHHhhhEec--CCCCChhHHHHHHHHHHHHHHHHHHHh-
Confidence 57899999874 35689999999999999999999999998743222454 4433322 268999999999999999
Q ss_pred cCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchh
Q psy5568 534 GNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGS 613 (685)
Q Consensus 534 ~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS 613 (685)
|+|++||+++.+. -|++.++++|.+++ .+.+++..+++| | +|++ .+ .+|.+
T Consensus 158 ---------gv~lvGGdT~~~p---------~~~i~~t~~G~v~~-~~~l~~~~a~~G-D----~Iil-tg----~lG~~ 208 (394)
T 3fd5_A 158 ---------GTSVTGGQTVLNP---------WIVLGGVATTVCQP-NEFIMPDNAVPG-D----VLVL-TK----PLGTQ 208 (394)
T ss_dssp ---------TCCEEEEEEEEES---------SCEEEEEEEEEECG-GGCCCTTCCCTT-C----EEEE-SS----CBCHH
T ss_pred ---------CCcEEeeeEEEcC---------CcEEEEEEEEEEcC-CceecCCCCCCC-C----EEEE-EC----CccHH
Confidence 9999999999642 15777889999975 677888888999 6 5555 22 24544
Q ss_pred HHHHH---hh------hhcCCCCCcCCHHH-HHHHH-------HHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCC
Q psy5568 614 ALSQV---LA------EVRGPSPDVEDAAA-LVRAF-------NVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSP 676 (685)
Q Consensus 614 ~la~~---~~------~~g~~~P~v~d~~~-~k~~~-------~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G 676 (685)
.+... ++ .+.+..+.. +++. ..+.. +...+++.++.|+|+||||+|||+.+|.|||.++++|
T Consensus 209 ~~~~~~~~l~~~~~~~~l~~~~~~~-~l~~~~~~~~~~~~~l~~~~~~l~~~~~v~A~~DvT~gGL~~~L~ema~aSgvg 287 (394)
T 3fd5_A 209 VAVAVHQWLDIPEKWNKIKLVVTQE-DVELAYQEAMMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNE 287 (394)
T ss_dssp HHHHHHHC------------CCCHH-HHHHHHHHHHHHHHSCSHHHHHHHHHTTCCEEEECCTTHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHhhccchhhhhhccCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCceEEEeCCCcHHHHHHHHHHHhcCCc
Confidence 33221 11 112222221 1111 11111 2234566778899999999999999999999999999
Q ss_pred eEEE
Q psy5568 677 KGWV 680 (685)
Q Consensus 677 ~~I~ 680 (685)
++|+
T Consensus 288 ~~I~ 291 (394)
T 3fd5_A 288 VSFV 291 (394)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9886
No 9
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=99.78 E-value=3.6e-19 Score=190.52 Aligned_cols=189 Identities=14% Similarity=0.031 Sum_probs=135.3
Q ss_pred eeEEecccCCceeecCHHHH-----HHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 457 AIATSIGEQPIKGLVDPKRG-----ARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 457 G~A~s~G~~p~~~~~DP~~g-----a~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
.++++++..+ .||+.+ |+.||+++++||+++|++|+..+++ ++| |++.+ ..+|.+.+++|.++|++
T Consensus 50 ~lv~ttD~~~----~~p~~~~~~~iG~~ava~~lsDlaamGA~P~~~~~~-l~~--p~~~~--~~~l~~i~~Gi~~~~~~ 120 (343)
T 2z1u_A 50 PLAMSTDSYT----VDPIFFPGGDIGTLAVHGTVNDVSMLGARPRYLSCG-FIL--EEGLD--MDILERVVASMGKAARE 120 (343)
T ss_dssp SEEEEEEEEC----CSSSEETTEEHHHHHHHHHHHHHHTTTEEEEEEEEE-EEE--ETTCC--HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCC----cCCeecCCccHHHHHHHHHHHHHHHcCCeeHHhhee-eec--CCCCC--HHHHHHHHHHHHHHHHH
Confidence 6888888664 345544 9999999999999999999986654 454 75542 35799999999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++.+++.. .. +|++.++++|.+++ .+.+++...++| | +|++ .+.. ...
T Consensus 121 ~----------g~~lvGGdt~~~~~g~---~~-~~~i~~t~vG~v~~-~~~~~~~~a~~G-D----~I~v-tg~~--G~~ 177 (343)
T 2z1u_A 121 A----------GVFIVTGDTKVVPRGA---CD-KMFINTTGIGEILV-DPAPSGDRARPG-D----AILI-SGSM--GDH 177 (343)
T ss_dssp H----------TCEEEEEEEEEECTTS---SS-SEEEEEEEEEEECC-SSCCCGGGCCTT-C----EEEE-CSCS--SHH
T ss_pred h----------CCEEECcEEEEcCCCC---CC-CeEEEEEEEEEECC-CccccccCCCCC-C----EEEE-ECCc--cHH
Confidence 9 9999999999876421 11 58999999999986 455677667899 6 5555 3322 222
Q ss_pred hhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHHc-CCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 612 GSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQD-GQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 612 GS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~~-glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+.|......+. ..+.+. +..+.+.+.++++++. +.|.|+||+|+|||+.+|.|||.++++|++|+
T Consensus 178 g~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~v~a~~Dis~GGL~~~L~e~a~~s~vg~~I~ 244 (343)
T 2z1u_A 178 GLTILSQRQGLN-FAADVC--SDSASLNRVVEKLVLEVGDIHVLRDPTRGGLATTLNEIAGQSQAVCHVL 244 (343)
T ss_dssp HHHHHHHTTTCC-CCTTCC--CCCCCCHHHHHHHHHHTCCCCEEECCCTTHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHhcccC-cchHHH--HhhhhHHHHHHHHHhccCCceEEEeCCCchHHHHHHHHHHhCCceEEEe
Confidence 455554432221 112221 1122233334445544 78999999999999999999999999999997
No 10
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=99.78 E-value=7.7e-19 Score=188.22 Aligned_cols=195 Identities=11% Similarity=0.002 Sum_probs=135.0
Q ss_pred eEEecccCCcee-----ecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhh
Q psy5568 458 IATSIGEQPIKG-----LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPAR 532 (685)
Q Consensus 458 ~A~s~G~~p~~~-----~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L 532 (685)
++++++.-.... .-+|+..++.||+++++||+++|++|+..+++ ++ +| +. ....|.+.+++|.++|+++
T Consensus 59 lv~stD~~~~~~~~~~~~~~~~~iG~~ava~~vsDlaa~Ga~P~~~~~~-l~--~~-~~--~~~~l~~i~~Gi~~~~~~~ 132 (348)
T 2z01_A 59 LISGTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLFFLDY-IA--CG-KA--VPEKIAAIVKGVADGCVEA 132 (348)
T ss_dssp EEEEEEECCTHHHHHHHHTCCSSHHHHHHHHHHHHHHTTTCEEEEEEEE-EE--ES-SC--CHHHHHHHHHHHHHHHHHH
T ss_pred eeeecccccchHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCChHHHHHH-hc--CC-CC--CHHHHHHHHHHHHHHHHHc
Confidence 566666543322 22678999999999999999999999987654 44 34 32 2356999999999999999
Q ss_pred hcCCCccccCCeeeeeeeceeecc-ccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 533 MGNTRREWIKPIMFSGGIGTMKHE-LKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 533 ~~~~~~~~~~gipivgGkdSm~~~-~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
|+|++||+++.... |+. .+.++.++++|.+++ .+.+++..+++| | .|+++ +......+
T Consensus 133 ----------g~~lvGGdt~~~~~~y~~----~~~~i~~t~vG~v~~-~~~l~~~~a~~G-D---~ii~~--g~~G~~~~ 191 (348)
T 2z01_A 133 ----------GCALIGGETAEMPGMYDE----DEYDLAGFAVGVAEK-ERLITGETIQAG-D---ALVGL--PSSGLHSN 191 (348)
T ss_dssp ----------TCEEEECCEEC------------CEEEEEEEEEEEEG-GGCCCSTTCCTT-C---EEEEE--ECSSSTTS
T ss_pred ----------CCEEECceeeecCCcccC----CCeeEEEEEEEEEcc-ccccCccCCCCC-C---EEEEE--CCchHHHh
Confidence 99999999983211 111 134677899999986 678898888999 6 45544 43334456
Q ss_pred hhHHHH-HhhhhcCCCC--Cc-CCHHHHHH--------HHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEE
Q psy5568 612 GSALSQ-VLAEVRGPSP--DV-EDAAALVR--------AFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGW 679 (685)
Q Consensus 612 GS~la~-~~~~~g~~~P--~v-~d~~~~k~--------~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I 679 (685)
|+.+.+ .+.+..+..+ ++ ++...+.+ ..+.++++++++.|+|+||+|+|||+.+|.||| ++++|++|
T Consensus 192 g~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~p~~~~~~~~~~l~~~~~v~a~~DiSdGGL~~~L~em~-~s~vg~~I 270 (348)
T 2z01_A 192 GYSLVRRIVFEQAKLSLDEIYEPLDVPLGEELLKPTRIYAKLLRSVRERFTIKGMAHITGGGLIENIPRML-PPGIGARI 270 (348)
T ss_dssp CHHHHHHHHHTTSCCCTTSCCTTCSSCHHHHHHCCCCCCHHHHHHHHHHSCCCEEEECCTTHHHHHHHHHS-CTTEEEEE
T ss_pred HHHHHHHHHhhhccCCcccccccccchHHHHHhhHHHHHHHHHHHHHhcCCceEEEeCCCCcHHHHHHHHh-ccCceEEE
Confidence 665544 4443222111 11 11111222 234456677788899999999999999999999 89999998
Q ss_pred E
Q psy5568 680 V 680 (685)
Q Consensus 680 ~ 680 (685)
+
T Consensus 271 ~ 271 (348)
T 2z01_A 271 Q 271 (348)
T ss_dssp E
T ss_pred e
Confidence 7
No 11
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=99.78 E-value=2.7e-18 Score=184.28 Aligned_cols=184 Identities=14% Similarity=0.103 Sum_probs=138.4
Q ss_pred eEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCC-CCchHHHHHHHHHHHHHHhhhhhcCC
Q psy5568 458 IATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAK-LPGEGAALFDACQAMSWVLPARMGNT 536 (685)
Q Consensus 458 ~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~-~p~~~~~L~~av~g~~d~c~~L~~~~ 536 (685)
++++++..++ ...|||..++.||+++++||+++|++|+..+++ ++ +|+. . ..++|.+.+++|.++|+++
T Consensus 64 lv~ttD~~~~-~~~~p~~~G~~ava~~lsDlaamGa~P~~~l~~-l~--~p~~~~--~~~~l~~i~~Gi~~~~~~~---- 133 (345)
T 2yyd_A 64 WVYTVDIITP-VVNDPYLWGAISTANALSDVYAMGGIPVNALAI-SC--FNNCEL--DIEIFREVIRGALDKLREA---- 133 (345)
T ss_dssp EEEEEEEECC-SSSCHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EE--ECTTTC--CHHHHHHHHHHHHHHHHHT----
T ss_pred EEEEeCCCCC-ccCCHHHHHHHHHHHHHHHHHHcCCchHHHhee-Ee--CCCCCC--CHHHHHHHHHHHHHHHHHc----
Confidence 8899998776 678999999999999999999999999986554 44 4543 2 2478999999999999999
Q ss_pred CccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHH
Q psy5568 537 RREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALS 616 (685)
Q Consensus 537 ~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la 616 (685)
|+|++||+++.++ .|++.++++|.+++ .+.+++..+++| | +|++ .+ .+|.+.+.
T Consensus 134 ------gv~lvGGdt~~~~---------~~~i~~t~vG~v~~-~~~~~~~~a~~G-D----~Iiv-tg----~lG~~~~~ 187 (345)
T 2yyd_A 134 ------KTVLLGGHTIDDK---------EPKFGLSVAGICPE-GKYITQSGAQVG-Q----LLIL-TK----PIGTGILI 187 (345)
T ss_dssp ------TCEEEEEEEEECS---------SCEEEEEEEEECGG-GCCCCSSCCCTT-C----EEEE-CS----CBCHHHHH
T ss_pred ------CCEEEeeEcccCC---------CceEEEEEEEEEcC-CceecCCCCCCC-C----EEEE-EC----CCcHHHHH
Confidence 9999999998542 26889999999976 677888888999 6 5555 23 25655443
Q ss_pred HHhhhhcCCCCCcCCHHHHHHHHH----HHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 617 QVLAEVRGPSPDVEDAAALVRAFN----VTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 617 ~~~~~~g~~~P~v~d~~~~k~~~~----~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
..+. .+..+.. +.+...+.+. ....+++++.++|+||+|+|||+.+|+|||.++++|++|+
T Consensus 188 ~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~a~~DiS~gGL~~~L~e~a~~sgvg~~I~ 252 (345)
T 2yyd_A 188 KGLK--EGILKEE-DINEAIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIF 252 (345)
T ss_dssp HHHH--TTSSCGG-GGHHHHHHHHSCSHHHHHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHH--hcCCCHH-HHHHHHHHHhcccHHHHHHHHhcCCeEEEECCCcHHHHHHHHHHHHcCCcEEEE
Confidence 3221 1112211 2222222221 2334667888999999999999999999999999999886
No 12
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=99.77 E-value=1.5e-18 Score=184.90 Aligned_cols=186 Identities=13% Similarity=0.078 Sum_probs=131.1
Q ss_pred ceeEEecccCCceeecCHH-----HHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhh
Q psy5568 456 RAIATSIGEQPIKGLVDPK-----RGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLP 530 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~-----~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~ 530 (685)
..++++++... .||+ ..++.||+++++||+++|++|+..++ +++||++.+ .++|.+.+++|.++|+
T Consensus 52 ~~lv~ttD~~~----~~~~~~~~~~iG~~ava~~lsDl~a~Ga~P~~~~~---~l~~p~~~~--~~~l~~~~~Gi~~~~~ 122 (338)
T 2z1e_A 52 KHIVFTIDGHT----VKPLFFPGGDIGRLAVSGTVNDLAVMGAEPIALAN---SMIIGEGLD--MEVLKRVLKSMDETAR 122 (338)
T ss_dssp EEEEEEEEEEC----CSSSEETTEEHHHHHHHHHHHHHHTTTCEEEEEEE---EEEEETTCC--HHHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCc----cCccccCCccHHHHHHHHHHHHHHHcCCchhHhEE---EEecCCCCC--HHHHHHHHHHHHHHHH
Confidence 46788887552 3444 34999999999999999999986443 455676543 5789999999999999
Q ss_pred hhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc
Q psy5568 531 ARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV 610 (685)
Q Consensus 531 ~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l 610 (685)
++ |+|++||+++.+++ + . ++++.++++|.+++. . ++..+++| | +|++ .+ .-. .
T Consensus 123 ~~----------g~~lvGGdt~~~~~--~---~-~~~i~~t~~G~v~~~--~-~~~~a~~G-D----~i~v-tg-~~G-~ 175 (338)
T 2z1e_A 123 EV----------PVPIVTGDTKVVED--K---I-EMFVITAGIGIAEHP--V-SDAGAKVG-D----AVLV-SG-TIG-D 175 (338)
T ss_dssp HT----------TCCEEEEEEEEESS--S---C-CEEEEEEEEEEESSC--C-CTTCCCTT-C----EEEE-SS-CSS-H
T ss_pred Hc----------CCEEECcEEEEcCC--C---C-ceEEEEEEEEEECCc--c-CccCCCCC-C----EEEE-EC-Ccc-H
Confidence 99 99999999997643 1 1 567888999999864 2 77778899 5 5555 33 211 2
Q ss_pred chhHHHHHhhhhcCCCCCcCCHHHHHHHHHHHHHHHH-c-C-CcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 611 GGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQ-D-G-QVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 611 GGS~la~~~~~~g~~~P~v~d~~~~k~~~~~v~~li~-~-g-lv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+|..+......+.- .+.+. ...+.+++.++++++ . + .|+|+||+|+|||+.+|.|||+++++|++|+
T Consensus 176 ~g~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~v~a~~Dis~GGL~~~l~ema~~s~~g~~I~ 245 (338)
T 2z1e_A 176 HGIALMSHREGIAF-ETELK--SDVAPIWDVVKAVAETIGWENIHAMKDPTRAGLSNALNEIARKSNVGILVR 245 (338)
T ss_dssp HHHHHHHHHTTCCC-SSCCC--CCCCCCHHHHHHHHHHHCGGGEEEEECCCTTHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHhhhccCCC-ChhHH--HhhhhHHHHHHHHHHhcccCceEEEEeCCCChHHHHHHHHHHhcCCeEEEE
Confidence 22233333322211 11110 011333445556665 5 3 7999999999999999999999999999986
No 13
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=99.76 E-value=1.7e-18 Score=185.97 Aligned_cols=187 Identities=14% Similarity=0.098 Sum_probs=138.1
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccC-CCCCchHHHHHHHHHHHHHHhhhhhc
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWA-AKLPGEGAALFDACQAMSWVLPARMG 534 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p-~~~p~~~~~L~~av~g~~d~c~~L~~ 534 (685)
..++++++..++ ...|||..|+.||+++++||+++|++|+..+++ ++| | ++. ..+.|.+.+++|.++|+++
T Consensus 61 ~~lv~ttD~~~~-~~~~p~~~G~~ava~~lsDiaamGA~P~~~l~~-l~~--p~~~~--~~~~l~~i~~Gi~~~~~~~-- 132 (347)
T 3u0o_A 61 TSVISTTDFFMP-IVDNPFDFGRIAATNAISDIFAMGGKPIMAIAI-LGW--PINKL--SPEIAREVTEGGRYACRQA-- 132 (347)
T ss_dssp EEEEEEEEEESC-CSSCHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EEE--CTTTS--CHHHHHHHHHHHHHHHHHT--
T ss_pred cEEEEEecCCCC-CccCHHHHHHHHHHHHHHHHHHcCCchHHHHhh-eeC--CCCCC--CHHHHHHHHHHHHHHHHHc--
Confidence 568899998754 468999999999999999999999999986654 444 5 332 2468999999999999999
Q ss_pred CCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhH
Q psy5568 535 NTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSA 614 (685)
Q Consensus 535 ~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~ 614 (685)
|+|++||+++.++ -+++.++++|.+++ .+.+++...++| | +|++ .+ .+|.+.
T Consensus 133 --------gv~lvGGdt~~~~---------~~~~~~t~vG~v~~-~~~~~~~~a~~G-D----~iil-tg----~~G~~~ 184 (347)
T 3u0o_A 133 --------GIALAGGHSIDAP---------EPIFGLAVTGIVPT-ERVKKNSTAQAG-C----KLFL-TK----PLGIGV 184 (347)
T ss_dssp --------TCCEEEEEEEECS---------SCEEEEEEEEEEEG-GGCCCSSCCCTT-C----EEEE-SS----CBCHHH
T ss_pred --------CCEEEcceeccCC---------CcEEEEEEEEEECC-cceecCCCCCCC-C----EEEE-eC----CccHHH
Confidence 9999999999642 15678899999975 677888888999 6 5555 23 255554
Q ss_pred HHHHh--hhhcCCCCCcCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 615 LSQVL--AEVRGPSPDVED-AAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 615 la~~~--~~~g~~~P~v~d-~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+...+ +.+.. +..+. .+...+......++.+.+.|+|+||+|+|||+.+|.|||.++++|++|+
T Consensus 185 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~v~a~~DiT~gGL~~~L~e~a~~sgvg~~I~ 251 (347)
T 3u0o_A 185 LTTAEKKSLLKP--EHQGLATEVMCRMNIAGASFANIEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVD 251 (347)
T ss_dssp HHHHHHTTCCCG--GGTTHHHHHHHSCCTHHHHHTTCTTEEEEEECCSSHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhCcCCh--HHHHHHHHHHHhhchHHHHHHhcCCCEEEEcCCCcHHHHHHHHHHHHcCCeEEEe
Confidence 43322 21211 11100 1222222223445667778999999999999999999999999999986
No 14
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=99.76 E-value=8.4e-18 Score=196.32 Aligned_cols=202 Identities=15% Similarity=0.110 Sum_probs=147.0
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
..+++++..+.....+|||.+|+.+|+.++||++++|++|+..++. ++|..|.. |+..+.|.+.++|++++|+++
T Consensus 78 ~~l~~~ve~h~~p~~~~P~~gg~~~v~~~l~Di~amGA~P~~~l~~-l~~~~~~~-~~~~~~l~~~~~Gi~~~~~~~--- 152 (725)
T 3ac6_A 78 WAVAFKIESHNHPSAVEPFQGAATGVGGILRDIMSMGARPIALLDS-LRFGPPEE-ARSRYLLKGVVSGIAFYGNAI--- 152 (725)
T ss_dssp EEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EEESCTTS-HHHHHHHHHHHHHHHHHHHHH---
T ss_pred eEEEEEeCcCCCCcccChHHHHHHHHhhhhhhhhccCChhHhheee-EEcCCCCC-ccHHHHHHHHHHHHHHHHHHh---
Confidence 4578888877777889999999999999999999999999986664 56644322 333567899999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|++||+++++..+. ..|++.++++|.++. .+.+ ....++| | .|++++-..+...+||+.+
T Consensus 153 -------G~~lvgG~t~~~~~~~-----~~~~i~~~~vG~v~~-~~~~-~~~a~~G-D---~ii~~G~~~g~~G~gg~~~ 214 (725)
T 3ac6_A 153 -------GVPTVGGDLYFHEGYR-----ENPLVNAMCLGLLRE-EHLK-RSRASLG-R---PIYYAGAKTGRDGIGGAAF 214 (725)
T ss_dssp -------TCCEEEEEEEECGGGS-----SSCEEEEEEEEEEEG-GGCC-CBCCCTT-C---EEEEEESCBCSCCC-----
T ss_pred -------CCCeeEEEEEEeCCcC-----CCceEEEEEEEEeCh-hhcc-cCCCCCC-C---EEEEECCCCCCCcchHHHH
Confidence 9999999999765443 247899999999975 3433 3445678 5 5555521134567888876
Q ss_pred HHH-hhh-hcCCCCCc--CCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQV-LAE-VRGPSPDV--EDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~-~~~-~g~~~P~v--~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
+.. +.. .....|.+ .++..++++.+.+.++.+.+.|.++||+|.|||+.+|.|||.++++|++|+
T Consensus 215 ~~~~~~~~~~~~~p~v~~g~~~~e~~~~~~~~~l~~~~~i~a~~Di~~gGL~~~l~ema~~sg~g~~i~ 283 (725)
T 3ac6_A 215 ASRELKEEKAEDRPAVQVGDPFLGKLLMEATLEAIELDLVEGVQDMGAAGLTSSLSELAHKSGLGVELH 283 (725)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHhhccccccCCcccccCCHHHHHHHHHHHHHHHhcCCeeEEEeCCCChHHHHHHHHHHhcCCeEEEE
Confidence 542 221 11223433 367777888888889999999999999999999999999999999999986
No 15
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=99.74 E-value=5.9e-18 Score=181.24 Aligned_cols=181 Identities=15% Similarity=0.049 Sum_probs=128.9
Q ss_pred CHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeec
Q psy5568 472 DPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIG 551 (685)
Q Consensus 472 DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkd 551 (685)
+|+..++.||+++++||+++|++|+..+++ +++ | +. ....|.+.+++|.++|+++ |+|++||++
T Consensus 76 ~~~~iG~~ava~~vsDi~a~Ga~P~~~l~~-l~~--~-~~--~~~~l~~i~~Gi~~~~~~~----------g~~lvGGdt 139 (346)
T 2btu_A 76 KHDTIGIDAVAMCVNDIVVQGAEPLFFLDY-IAC--G-KA--EPSKIENIVKGISEGCRQA----------GCALIGGET 139 (346)
T ss_dssp CCSSHHHHHHHHHHHHHHTTTCEEEEEEEE-EEE--S-SC--CHHHHHHHHHHHHHHHHHH----------TCEEEEEEE
T ss_pred CcchHHHHHHHHHHHHHHHcCCChHHHHHH-Hhc--C-CC--CHHHHHHHHHHHHHHHHHh----------CCeEeeeEE
Confidence 467789999999999999999999987654 443 3 32 2356999999999999999 999999999
Q ss_pred eeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHHHH-Hhhhhc--C---C
Q psy5568 552 TMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQ-VLAEVR--G---P 625 (685)
Q Consensus 552 Sm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~-~~~~~g--~---~ 625 (685)
+.....-++ .+..+.++++|.+++ .+.+++..+++| | .|+++ +......+|+.+.+ .+.+.+ . +
T Consensus 140 ~~~~~~y~~---~~~~i~~t~vG~v~~-~~~~~~~~a~~G-D---~ii~~--g~~G~~~~g~~l~~~~~~~~g~~~~~~~ 209 (346)
T 2btu_A 140 AEMPGMYST---EEYDLAGFTVGIVDK-KKIVTGEKIEAG-H---VLIGL--ASSGIHSNGYSLVRKVLLEDGELSLDRI 209 (346)
T ss_dssp EECSTTSCS---SCEEEEEEEEEEEET-TSCCCSTTCCTT-C---EEEEE--ECSSSTTSCHHHHHHHHHSSCCC----C
T ss_pred EEcCCcccC---CCccEEEEEEEEEcc-ccccCccCCCCC-C---EEEEE--CCchhhhhHHHHHHHHHhhccccccCcc
Confidence 843211011 124678899999987 678899888999 6 55555 43334456665544 443222 1 1
Q ss_pred CCCcCCHHHHHH-------HHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 626 SPDVEDAAALVR-------AFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 626 ~P~v~d~~~~k~-------~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.++..+. ...+ ..+.++++++++.|+|+||+|+|||+.+|.||| ++++|++|+
T Consensus 210 ~~~~~~~-l~~~~l~p~~~~~~~~~~ll~~~~v~a~~DiS~GGL~~~L~ema-~s~vg~~I~ 269 (346)
T 2btu_A 210 YGRLELP-LGEELLKPTKIYVKPILELLKNHEVYGMAHITGGGFIENIPRML-PEGIGAEIE 269 (346)
T ss_dssp CSSSCSC-HHHHHTCCCCCCHHHHHHHHHHSCCCCCEECCTTHHHHHTGGGC-CTTEEEEEC
T ss_pred chhhhhH-HHHHHhhHHHHHHHHHHHHHHhCCceEEEeCCCChHHHHHHHHH-hCCeeEEEe
Confidence 1111011 1111 234566777888999999999999999999999 899999886
No 16
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=99.73 E-value=6e-17 Score=171.78 Aligned_cols=181 Identities=14% Similarity=0.072 Sum_probs=131.4
Q ss_pred ceeEEecccC---C-ceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 456 RAIATSIGEQ---P-IKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 456 ~G~A~s~G~~---p-~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
..++++++.. + .+...|||..|+.||+++++||+++|++|+..+++ ++ +|+ .+ ..+|.+.+++|.++|++
T Consensus 37 ~~lv~ttD~~~~~~hf~~~~~p~~~G~~ava~~lsDiaamGa~P~~~l~~-l~--~p~-~~--~~~l~~i~~Gi~~~~~~ 110 (319)
T 3mcq_A 37 MELAVSADMLVANTHFYPNIDPWLIGWKSLAVNISDMAAMGAQPRWATLT-IA--LPE-AD--EDWISKFAAGFFACAAQ 110 (319)
T ss_dssp CEEEEEEEEEECCTTSCCCSCHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EE--ESS-CC--HHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecccCcccCCCCCCCHHHHHHHHHHHHHHHHHHcCCchHHhEEE-EE--CCC-CC--HHHHHHHHHHHHHHHHH
Confidence 5788888852 3 23446999999999999999999999999976654 44 464 32 35799999999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++- + +|++.++++|.+++ .+.++...+++| | +|++ .+ .+|
T Consensus 111 ~----------g~~lvGGdt~~-----~-----~~~i~~t~iG~v~~-~~~~~~~~a~~G-D----~ii~-tg----~~G 159 (319)
T 3mcq_A 111 F----------DIALIGGDTTR-----G-----PLTISVQIMGETPP-GASLLRSTARAD-D----DIWV-SG----PLG 159 (319)
T ss_dssp T----------TCEEEEEEEEE-----S-----SCEEEEEEEEEECT-TCCCCSSCCCTT-E----EEEE-CS----CCS
T ss_pred c----------CCeEEeeEcCC-----C-----CeEEEEEEEEeeCC-CcccccCCCCCC-C----EEEE-EC----Ccc
Confidence 9 99999999972 2 48999999999976 567888888999 5 5555 23 244
Q ss_pred hhH--HHHHhhhhcCCCCCcCCHHHHHHHHHHHHH--------HHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 612 GSA--LSQVLAEVRGPSPDVEDAAALVRAFNVTQR--------LIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 612 GS~--la~~~~~~g~~~P~v~d~~~~k~~~~~v~~--------li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.+. ++...+.. .+ +.+....+.+.+.+ ...++.++|+||||+ ||+.+|.|||.++++|++|+
T Consensus 160 ~~~~g~~~~~~~~-----~~-~~~~~~~~~~~~~~p~~~~~~~~~l~~~v~a~~DiS~-GL~~~L~e~a~~s~vg~~i~ 231 (319)
T 3mcq_A 160 DAALALAAIQGRY-----PL-SDTELAACGKALHQPQPRVVLGQALRGLAHSALDISD-GLLADLGHILEHSQVGAEVW 231 (319)
T ss_dssp HHHHHHHHHTTSS-----CC-CHHHHHHHHHHHHCCCCCHHHHHHTTTTEEEEEECSS-CHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHhcCC-----CC-ChHHHHHHHHHHhCCCccHHHHHHHhccCcEEEEccH-hHHHHHHHHHHHcCCcEEEe
Confidence 433 22222211 11 12222222222111 123568999999999 99999999999999999986
No 17
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=99.70 E-value=7e-17 Score=172.83 Aligned_cols=189 Identities=12% Similarity=0.061 Sum_probs=135.4
Q ss_pred ceeEEecccCCceeecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcC
Q psy5568 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGN 535 (685)
Q Consensus 456 ~G~A~s~G~~p~~~~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~ 535 (685)
.-++++++...... .|||..++.||+.+++||+++|++|+..+.+ ++|..++ . ..+.|.+.+++|.++|+++
T Consensus 62 ~~lv~ttD~~~~~v-~~P~~~G~~Av~~~lsDiaAmGa~P~~~l~~-l~~p~~~-~--~~~~l~~~~~Gi~~~~~~~--- 133 (345)
T 2zod_A 62 IIWVYTVDIITPVV-NDPYLWGAISTANALSDVYAMGGIPVNALAI-SCFNNCE-L--DIEIFREVIRGALDKLREA--- 133 (345)
T ss_dssp EEEEEEEEEECCSS-SCHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EEECTTT-C--CHHHHHHHHHHHHHHHHHT---
T ss_pred cEEEEEecCCCCcc-cCHHHHHHHHHHHHHHHHHHcCCCchhhhhh-hhcCCCc-C--CHHHHHHHHHHHHHHHHhc---
Confidence 55778888665444 4999999999999999999999999876654 4553222 2 2467999999999999999
Q ss_pred CCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH
Q psy5568 536 TRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL 615 (685)
Q Consensus 536 ~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l 615 (685)
|+|++||+++.++ .|++.++++|.++. .+.+++.-.++| | +|++ +. .+|++.+
T Consensus 134 -------gv~lvGGdt~~~~---------~~~i~~t~~G~~~~-~~~~~~~~a~~G-D----~iiv--tg---~lG~~~~ 186 (345)
T 2zod_A 134 -------KTVLLGGHTIDDK---------EPKFGLSVAGICPE-GKYITQSGAQVG-Q----LLIL--TK---PIGTGIL 186 (345)
T ss_dssp -------TCEEEEEEEEECS---------SCEEEEEEEEECGG-GCCCCSSCCCTT-C----EEEE--CS---CBCHHHH
T ss_pred -------cCcccCCceEECC---------cCcccceeEEEecC-ccccccccCCCC-C----eEEE--cC---CCcchhH
Confidence 9999999997431 37888999999864 567787778899 5 5665 32 3566654
Q ss_pred HHH--hhhhcCCCCCcCCHHHHHHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 616 SQV--LAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 616 a~~--~~~~g~~~P~v~d~~~~k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
... .+......... ..+..........++.....+.|+||+|+|||+.+|.|||.++++|++|+
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~a~~Dit~~GL~~~L~eia~~S~vg~~I~ 252 (345)
T 2zod_A 187 IKGLKEGILKEEDINE-AIENMLALNDKARNLMLSLDATACTDVTGFGLLGHAWNICKNSNIGARIF 252 (345)
T ss_dssp HHHHHTTSSCGGGGHH-HHHHHHSCSHHHHHHHHHTTCSEEEECCTTHHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHhhccccchhhhh-hHHhhhccchhHhhhhcccccceeeccccchHHHHHHHHHhccCCCeEee
Confidence 332 22111110000 11112222233445566778999999999999999999999999999885
No 18
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=99.70 E-value=3.6e-17 Score=174.65 Aligned_cols=180 Identities=13% Similarity=0.080 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeece
Q psy5568 473 PKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGT 552 (685)
Q Consensus 473 P~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdS 552 (685)
++..++.||+++++||+|+|++|+..+++ +++ + +. ....|.+.+++|.++|+++ |+|++||+++
T Consensus 49 ~~~iG~~ava~~vsDiaamGA~P~~~l~~-l~~--~-~~--~~~~l~~i~~Gi~~~~~~~----------g~~lvGGdT~ 112 (334)
T 2v9y_A 49 HDTIGQDLVAMCVNDILAQGAEPLFFLDY-FSC--G-KL--DLSVTEAVVAGIAKACGKA----------GCALLGGETA 112 (334)
T ss_dssp CTTHHHHHHHHHHHHHHTTTCEEEEEEEE-EEE--S-SC--CHHHHHHHHHHHHHHHHHH----------TCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHCCCcHHHHHHH-hcC--C-CC--CHHHHHHHHHHHHHHHHHh----------CCeEEeEEeE
Confidence 58899999999999999999999988775 554 3 22 2356899999999999999 9999999998
Q ss_pred eecc-ccCCcccCCcceEEEEEeeeCCCCcccCC-CCcCCCCCCcceEEEEEcCCCcCccchhHHHH-Hh---hh-hcCC
Q psy5568 553 MKHE-LKEKASPNVGSLVISTYAPCPDIRQVVTP-DIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQ-VL---AE-VRGP 625 (685)
Q Consensus 553 m~~~-~~~~~v~ippTlvisa~g~v~d~~~~vtp-~~k~~G~d~~s~lv~i~lg~~~~~lGGS~la~-~~---~~-~g~~ 625 (685)
.... +. .....+.++++|.+++ .+.+++ ...++| | .|+++ +.......|+.+.+ .+ +. ....
T Consensus 113 ~~~~~y~----~~~~~i~~t~vG~v~~-~~~~~~~~~a~~G-D---~Ii~~--g~~G~~~~g~~~~~~~~~~~~~~~~~~ 181 (334)
T 2v9y_A 113 EMPDMYP----PGEYDLAGFAVGAMER-DQKLPHLERITEG-D---VVVGI--ASSGLHSNGFSLVRKIVAKSSLQYSSP 181 (334)
T ss_dssp ECTTTSC----TTCEEEEEEEEEEEEG-GGCSCCGGGCCTT-C---EEEEE--ECSSSTTSSHHHHHHHHHHSSCCTTSB
T ss_pred EcCCccc----CCceeEEEEEEEEEcc-ccccccccCCCCC-C---EEEEE--CCccHHHHHHHHHHhHhhhccCccccc
Confidence 3211 10 0012355669999976 567787 778999 6 45544 43334445555443 22 11 1222
Q ss_pred CCC-c--CCHHHH-----HHHHHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 626 SPD-V--EDAAAL-----VRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 626 ~P~-v--~d~~~~-----k~~~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
.|. + .++... ++..+.+.++++++.+.|+||+|+|||+.+|.||| ++++|++|+
T Consensus 182 ~~~d~~~~~l~~~~~~p~~~~~~~~~~l~~~~~v~a~~DiS~GGL~~~L~ema-~s~vg~~I~ 243 (334)
T 2v9y_A 182 APDGCGDQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITGGGLLENIPRVL-PEKLGVDLD 243 (334)
T ss_dssp CCTTSCSSBHHHHHTCCCCCCHHHHHHHHHTTCCCEEEECCTTHHHHHSGGGS-CTTEEEEEE
T ss_pred cccccchhHHHHHHhhhhHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHh-hcCeEEEEe
Confidence 332 2 122221 11244667788888899999999999999999999 999999986
No 19
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=99.68 E-value=1.6e-16 Score=170.28 Aligned_cols=187 Identities=10% Similarity=-0.040 Sum_probs=129.4
Q ss_pred ceeEEeccc---CCcee-ecCHHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhh
Q psy5568 456 RAIATSIGE---QPIKG-LVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPA 531 (685)
Q Consensus 456 ~G~A~s~G~---~p~~~-~~DP~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~ 531 (685)
..++++++. ++.+. ..||+..++.||+++++||+++|++|+..+++ +++|++. ..++|.+.+++|.++|++
T Consensus 72 ~~lv~ttD~~~~~~~f~~~~~p~~iG~~ava~~vsDlaamGA~P~~~l~~---l~~p~~~--~~~~l~~i~~Gi~~~~~~ 146 (342)
T 3c9u_A 72 KKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANGGLPKWALIS---LNLPEDL--EVSYVERFYIGVKRACEF 146 (342)
T ss_dssp EEEEEEEEEEEBTTTBCTTSCHHHHHHHHHHHHHHHHHHTTCEEEEEEEE---EEECTTS--BHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCccCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCchHHhEEE---EecCCCC--CHHHHHHHHHHHHHHHHH
Confidence 568888876 67663 67899999999999999999999999976554 4456553 357899999999999999
Q ss_pred hhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccc
Q psy5568 532 RMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVG 611 (685)
Q Consensus 532 L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lG 611 (685)
+ |+|++||+++.. .+|++.++++|. + .+.+++...+|| | .|+++ |.......
T Consensus 147 ~----------gv~lvGGdT~~~---------~~~~i~vt~vG~-~--~~~l~~~~a~~G-D---~Iivt--G~~G~~~~ 198 (342)
T 3c9u_A 147 Y----------KCEVVGGNISKS---------EKIGISVFLVGE-T--ERFVGRDGARLG-D---SVFVS--GTLGDSRA 198 (342)
T ss_dssp H----------TCEEEEEEEEEC---------SSCEEEEEEEEE-E--SSCCCSSCCCTT-C---EEEEE--SCSSHHHH
T ss_pred c----------CCeEEeeEeeec---------CCeEEEEEEEEe-c--CccccccCCCCC-C---EEEEE--CchhHHHH
Confidence 9 999999999831 158999999998 3 366777778999 6 44443 43322222
Q ss_pred hhHHHHHhhhhcCCCCCcCCHHHHHHHHHH---H-HHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 612 GSALSQVLAEVRGPSPDVEDAAALVRAFNV---T-QRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 612 GS~la~~~~~~g~~~P~v~d~~~~k~~~~~---v-~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
|+.+.+ .+... .... ......+..+- + ..++..+.+.++||+|+ ||+.+|.|||.++++|++|+
T Consensus 199 g~~~l~-~~~~~--~~~~-~~~~~~~~~~p~~~~~~~~~~~~~v~a~~DiSd-GL~~~L~eia~~sgvg~~Id 266 (342)
T 3c9u_A 199 GLELLL-MEKEE--YEPF-ELALIQRHLRPTARIDYVKHIQKYANASMDISD-GLVADANHLAQRSGVKIEIL 266 (342)
T ss_dssp HHHHHH-TTCSC--CCHH-HHHHHHHHHSCCCCGGGHHHHHHHCSEEEEESS-CHHHHHHHHHHHHTCEEEEC
T ss_pred HHHHHh-cCCcc--cccc-cHHHHHHHhCchhhHHHHHHhhccCeEEEECCc-hHHHHHHHHHHHhCCeEEEe
Confidence 333322 11110 1111 00111111100 1 01222345899999999 99999999999999999986
No 20
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=99.65 E-value=1.5e-15 Score=163.22 Aligned_cols=197 Identities=11% Similarity=0.079 Sum_probs=134.1
Q ss_pred ceeEEecccCCcee----ecCH-HHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhh
Q psy5568 456 RAIATSIGEQPIKG----LVDP-KRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLP 530 (685)
Q Consensus 456 ~G~A~s~G~~p~~~----~~DP-~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~ 530 (685)
..++++++....+. ..|+ +..++.||+.+++||+++|++|+..+++ +++ + +. ....+.+.+++|.++|+
T Consensus 61 ~~lv~stD~~~~k~~~a~~~~~~~~iG~~ava~~vsDiaamGA~P~~~l~~-l~~--~-~~--~~~~l~~i~~Gi~~~~~ 134 (350)
T 3m84_A 61 PVLVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPITFLDY-VAH--D-KL--DPAIMEELVKGMSKACA 134 (350)
T ss_dssp EEEEEEEECCTTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCEEEEEEEE-EEE--S-SC--CHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCcCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcHHHHHHH-hcC--C-CC--CHHHHHHHHHHHHHHHH
Confidence 34677777665443 3455 8889999999999999999999987765 454 2 32 23568999999999999
Q ss_pred hhhcCCCccccCCeeeeeeeceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCcc
Q psy5568 531 ARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRV 610 (685)
Q Consensus 531 ~L~~~~~~~~~~gipivgGkdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~l 610 (685)
++ |+|++||+++.+++...+ . ...+.++++|.+++ .+.++....++| | .|+++ +......
T Consensus 135 ~~----------g~~lvGGdT~~~p~~~~~--~-~~~l~gt~vG~v~~-~~~l~~~~a~~G-D---~Ii~t--g~~G~~~ 194 (350)
T 3m84_A 135 EC----------GVSLVGGETAEMPGVYQA--G-EIDMVGVITGIVDR-KRIINGENIKEG-D---IVFGL--SSSGLHT 194 (350)
T ss_dssp HT----------TCEEEEEEEEECTTTBCT--T-CEEEEEEEEEEEEG-GGCCCSTTCCTT-C---EEEEE--ECSSSTT
T ss_pred Hh----------CCeEEeeeeeEcCCcccC--C-cccEEEEEEEEEeC-CcccccccCCCC-C---EEEEe--cCchHHH
Confidence 99 999999999965432111 1 12466679999975 677888888999 6 45544 3221222
Q ss_pred chhH-HHHHh-hh----hcCCCCCcCCHHHHH-HH-------HHHHHHHHH-cCCcEEEEcCCcchHHHHHHHHHhcCCC
Q psy5568 611 GGSA-LSQVL-AE----VRGPSPDVEDAAALV-RA-------FNVTQRLIQ-DGQVLSGHDISDGGLLICLLEMDVGANS 675 (685)
Q Consensus 611 GGS~-la~~~-~~----~g~~~P~v~d~~~~k-~~-------~~~v~~li~-~glv~A~HDvSdGGL~~aLaEMa~ag~~ 675 (685)
.|.. +.+++ ++ +....|.++. +.+. ++ .+.+.++++ ++.|+|+||+|.|||+.+|.||| ++++
T Consensus 195 ~g~~l~r~~~~~~~~~~~~~~~~~~~~-~~l~~~ll~p~r~~~~~~~~l~~~~~~v~a~~DiTggGL~~~L~ei~-~sgv 272 (350)
T 3m84_A 195 NGYSFARKLFFDVAGNKHTDTYPELEG-KTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIENIPRVL-PQGL 272 (350)
T ss_dssp SSHHHHHHHHHTTSCCCTTCCCGGGTT-CCHHHHHTCCCCCCHHHHHHHHHTTCCCCEEEECCTTHHHHHHHHHS-CTTC
T ss_pred HHHHHHHHHhhhhhcCCccccccccch-hHHHHHHhhhhhhhHHHHHHHHhccCCeeEEEeCCCccHHHHHHHHh-hhCc
Confidence 2333 33333 22 1222222100 1111 11 134556777 78999999999999999999999 8999
Q ss_pred CeEEE
Q psy5568 676 PKGWV 680 (685)
Q Consensus 676 G~~I~ 680 (685)
|++|+
T Consensus 273 g~~I~ 277 (350)
T 3m84_A 273 GAQID 277 (350)
T ss_dssp EEEEC
T ss_pred eEEEE
Confidence 99886
No 21
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=99.61 E-value=2.9e-15 Score=161.03 Aligned_cols=181 Identities=10% Similarity=0.033 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHhhhhccCCccccccccccccccCCCCCchHHHHHHHHHHHHHHhhhhhcCCCccccCCeeeeeeece
Q psy5568 473 PKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGT 552 (685)
Q Consensus 473 P~~ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~~~p~~~~~L~~av~g~~d~c~~L~~~~~~~~~~gipivgGkdS 552 (685)
|...++.||+.+++||+++|++|+..+++ +++ + +. ....+.+.+++|.++|+++ |+|++||+++
T Consensus 84 ~~~iG~~aVa~~vsDiaamGA~P~~~l~~-l~~--~-~~--~~~~l~~i~~Gi~~~~~~~----------g~~lvGGdT~ 147 (349)
T 3p4e_A 84 HDTIGIDLVAMCVNDLIVQGAEPLFFLDY-YAT--G-KL--DVDTAAEVISGIADGCLQA----------GCALIGGETA 147 (349)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCEEEEEEEE-EEE--S-SC--CHHHHHHHHHHHHHHHHHH----------TCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHh-hcC--C-CC--CHHHHHHHHHHHHHHHHHc----------CCEEEcceeE
Confidence 45789999999999999999999998765 454 2 22 2357899999999999999 9999999999
Q ss_pred eeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEEEcCCCcCccchhHH-HHHhhhhcCCC-CCcC
Q psy5568 553 MKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSAL-SQVLAEVRGPS-PDVE 630 (685)
Q Consensus 553 m~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i~lg~~~~~lGGS~l-a~~~~~~g~~~-P~v~ 630 (685)
.++....+ .. -.++++++|.+++ .+.++....++| | .|+++ +.......|..+ .+++.+.+-.. +.++
T Consensus 148 ~~~~~~~~--~~-~~l~gt~vG~v~~-~~~~~~~~a~~G-D---~Ii~t--g~~G~~~~g~~l~~~~~~~~~~~~~~~~~ 217 (349)
T 3p4e_A 148 EMPGMYEG--ED-YDVAGFCVGVVEK-EEIIDGSKVQVG-D---ALIAV--GSSGPHSNGYSLVRKILEVSKADKNERLA 217 (349)
T ss_dssp ECBTTBCT--TC-EEEEEEEEEEEEG-GGCCCSTTCCTT-C---EEEEE--ECSSSTTSSHHHHHHHHHHHTCCTTCEET
T ss_pred ECCCcccC--Cc-ccEEEEEEEEEcC-cccccCCCCCCC-C---EEEEc--CCcchhhhHHHHHHHHHhhccCCcccccc
Confidence 65532211 11 1355678999975 577888888999 6 45554 332222334333 33433222111 1121
Q ss_pred CHHHHHHH-------HHHHHHHHHcCCcEEEEcCCcchHHHHHHHHHhcCCCCeEEE
Q psy5568 631 DAAALVRA-------FNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANSPKGWV 680 (685)
Q Consensus 631 d~~~~k~~-------~~~v~~li~~glv~A~HDvSdGGL~~aLaEMa~ag~~G~~I~ 680 (685)
......++ .+.+.++++++.|.|+||||.|||+.+|.||| ++++|++|+
T Consensus 218 ~~~l~~~ll~p~r~~~~~~~~l~~~~~v~a~~DiTggGL~~~L~e~a-~sgvg~~Id 273 (349)
T 3p4e_A 218 GKTIGEHLLAPTKIYIKSGLKLIAEHDIHAISHITGGGFWENIPRVL-PEGTKAVID 273 (349)
T ss_dssp TEEHHHHHHCCCCCCHHHHHHHHHHSCCCEEEECCTTHHHHHGGGGC-CTTEEEEEC
T ss_pred hhHHHHHHhhhhHHhHHHHHHHHhcCCceEEEeCCcchHHHHHHHHh-hhCceEEEe
Confidence 00111111 13456677888999999999999999999999 899999886
No 22
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.58 E-value=2.9e-16 Score=191.53 Aligned_cols=91 Identities=34% Similarity=0.699 Sum_probs=82.1
Q ss_pred CCCCCCCCCCCCCCCcChhHHHhhcCCccccccCcCCcccccceeeeeccccC----ccccccccceeeecCCccccccc
Q psy5568 2 KLPWEDEQYGYPNNFATPLNILIEASNGASDYGNKFGEPLILGFARSYGQHCN----GERREWIKPIMFSGGIGTMKHEL 77 (685)
Q Consensus 2 ~~pwe~~~~~~p~~~a~~l~i~~~~~~ga~~~~n~fg~p~~~g~~rt~~~~~~----~~~~~~~kpim~agg~g~~~~~~ 77 (685)
.+|||+ +++||.|++||++||++|++|+|+|||+||+|+|+||||+|++..+ |++||||||||++||+|.|++.+
T Consensus 354 ~~p~e~-~~g~p~~~~~~~~i~~~g~~G~s~ygN~~Gvp~V~G~~~~~~~~~~~~~~~~~~g~~kp~v~~~gvG~i~~~~ 432 (1303)
T 3ugj_A 354 EQPWEE-DFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEELRGYHKPIMLAGGIGNIRADH 432 (1303)
T ss_dssp CCTTCC-CCCCCTTSCCHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECEEEEEETTEEEEEECSSCEEEEEEEEEECGGG
T ss_pred CCcccc-ccCCchhccChhhhhhcccchHHHHHHhcCCCCcceEEEEEeeeccccccccccccCCceeEEEEEEEEehHH
Confidence 589997 6899999999999999999999999999999999999999997653 68899999999999999999999
Q ss_pred cccCCCCccceEEEEEc
Q psy5568 78 KEKASPNVVQMAIIRYY 94 (685)
Q Consensus 78 ~~k~~~~~~~m~ml~l~ 94 (685)
+.|..+.+| +.++.+-
T Consensus 433 ~~~~~~~~G-d~Iiv~G 448 (1303)
T 3ugj_A 433 VQKGEIVVG-AKLIVLG 448 (1303)
T ss_dssp SSCCCCCTT-CEEEEEE
T ss_pred cccccCCCC-CEEEEEC
Confidence 998888775 5655553
No 23
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=98.16 E-value=2.3e-05 Score=85.21 Aligned_cols=102 Identities=13% Similarity=0.026 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccccCC-CCCchHHHHHHHHHHHHHHh---hhhhcCCCccccCC--eeeeee
Q psy5568 476 GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAA-KLPGEGAALFDACQAMSWVL---PARMGNTRREWIKP--IMFSGG 549 (685)
Q Consensus 476 ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~-~~p~~~~~L~~av~g~~d~c---~~L~~~~~~~~~~g--ipivgG 549 (685)
-++.+|+-++++|+++||+|+.-++. -++..+ .. ....+.+.+++|.+.| ++. | ++++||
T Consensus 82 IG~daVam~VNDIaamGA~Pl~~L~~--a~g~l~~~~--~~e~l~~Iv~Gi~e~~~~~~~a----------Gvg~~LVGG 147 (394)
T 3kiz_A 82 IAQDAVIMNIDDLICVGAVDNILLSS--TIGRNKNLI--PGEVLAAIINGTEEVLQMLRDN----------GIGIYSTGG 147 (394)
T ss_dssp HHHHHHHHHHHHHGGGTCCSSEEEEE--EEEECTTTS--CHHHHHHHHHHHHHHHHHHHHT----------TCCEEEEEE
T ss_pred hhhhheEeeHHHHHhCcCchHHHHHh--hcCcCccCC--CHHHHHHHHHHHHHHHHHHHHh----------CCCceEEee
Confidence 48999999999999999999865543 232211 11 1356888999999988 588 8 799999
Q ss_pred eceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEE
Q psy5568 550 IGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWI 601 (685)
Q Consensus 550 kdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i 601 (685)
++.-.. + ...++.+..+++|.++. .+.++..-.++| | .||.+
T Consensus 148 eTae~p---~--l~~~~~i~~t~vGiV~~-~~ii~~~~ak~G-D---~IIgl 189 (394)
T 3kiz_A 148 ETADVG---D--LVRTIIVDSTVTCRMKR-QDVISNENIKAG-N---VIVGF 189 (394)
T ss_dssp EEEECT---T--TBSSEEEEEEEEEEEEG-GGCCCGGGCCTT-C---EEEEE
T ss_pred eeeEcC---C--cccCccEEEEEEEEEcc-CcccccccCCCC-C---EEEEE
Confidence 996221 1 22245677899998864 567888777899 6 56655
No 24
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=97.97 E-value=4.2e-05 Score=83.00 Aligned_cols=102 Identities=10% Similarity=-0.026 Sum_probs=73.1
Q ss_pred HHHHHHHHHHhhhhccCCccccccccccccccCC-CCCchHHHHHHHHHHHHHHhh---hhhcCCCccccCC--eeeeee
Q psy5568 476 GARMAVAEALTNLVFAKISDLKDVKCSGNWMWAA-KLPGEGAALFDACQAMSWVLP---ARMGNTRREWIKP--IMFSGG 549 (685)
Q Consensus 476 ga~~AV~EAl~Nl~a~Ga~pl~~v~~s~N~~~p~-~~p~~~~~L~~av~g~~d~c~---~L~~~~~~~~~~g--ipivgG 549 (685)
-++.+|+-++++|+++||+|+.-++. -++..+ .. ....+.+.+++|.++|+ +. | ++++||
T Consensus 81 IG~daVamnVNDIaamGA~Pl~~L~~--a~g~l~~~~--~~e~l~~Iv~Gi~e~c~~~~~a----------Gigv~LVGG 146 (389)
T 3mdo_A 81 IAQDALIMNIDDLLCVGAVDNILVSS--TIGRNKLLV--PGEVISAIINGTDELLAELREM----------GVGCYATGG 146 (389)
T ss_dssp HHHHHHHHHHHHHHTTTCCSSEEEEE--EEEECTTTS--CHHHHHHHHHHHHHHHHHHHHT----------TCCEEEEEE
T ss_pred HHhHheEeeHHHHHhCcCChHHHHHh--hcCcCccCC--CHHHHHHHHHHHHHHHHHHHHh----------CCCcEEeCc
Confidence 48999999999999999999765543 232221 11 23578889999999884 77 7 999999
Q ss_pred eceeeccccCCcccCCcceEEEEEeeeCCCCcccCCCCcCCCCCCcceEEEE
Q psy5568 550 IGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWI 601 (685)
Q Consensus 550 kdSm~~~~~~~~v~ippTlvisa~g~v~d~~~~vtp~~k~~G~d~~s~lv~i 601 (685)
++.-.. + ...++.+..+++|.++. .+.++..-.+|| | .||.+
T Consensus 147 eTae~p---~--l~~~~~v~~t~vGiV~~-~~ii~~~~ak~G-D---~IIgl 188 (389)
T 3mdo_A 147 ETADVG---D--LVRTIIVDSTVTCRMKR-SDVIDNKNIQGG-D---VIVGL 188 (389)
T ss_dssp EEEECT---T--TBSSEEEEEEEEEEEEG-GGCCCGGGCCTT-C---EEEEE
T ss_pred cceECC---C--cccCccEEEEEEEEEcc-ccccccccCCCC-C---EEEEE
Confidence 996221 1 22245677899998864 567887767899 6 56655
No 25
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=96.56 E-value=0.00031 Score=75.08 Aligned_cols=94 Identities=18% Similarity=0.160 Sum_probs=62.8
Q ss_pred hhcccccccccceeEEECCccChHhHHHH-hhhh-ccccCCCceeec--ccccceeeccccCCccccCCCCCCCCceecc
Q psy5568 278 SNSEHSRHWFFKGKMIVDGIESDKCLFEM-IMDT-TKHSNQNNVIKF--NDNSSAIQGYRDLPAITPTNPGAPGPYTITN 353 (685)
Q Consensus 278 ~wSEHCrhk~F~~~~~idg~~~~~sL~~~-i~~t-~~~~~~~~v~~~--~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~ 353 (685)
++..||..| .+..+++. +... ....++++++++ +|+++|++..
T Consensus 12 ~~~~gc~~K------------~~~~~l~~~l~~~~~~~~~~~v~vg~~~gdDaavi~~~--------------------- 58 (347)
T 3u0o_A 12 SHGAGCGCK------------ISPKVLETILHSEQAKFVDPNLLVGNETRDDAAVYDLG--------------------- 58 (347)
T ss_dssp -----------------------------CCCCSCCSSCCCSSBCSCSSCCSSEEEECT---------------------
T ss_pred cCCCCceee------------cCHHHHHHHHHhcCCCCCCCCeEECCCCCCceEEEEeC---------------------
Confidence 355677667 45555554 3331 123457888888 8999999942
Q ss_pred cceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEec
Q psy5568 354 QDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVG 407 (685)
Q Consensus 354 ~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g 407 (685)
++..++++..+ |+|...+||.++...+.+.+||+.+| ||+|++.++.+++.
T Consensus 59 ~~~~lv~ttD~-~~~~~~~p~~~G~~ava~~lsDiaam--GA~P~~~l~~l~~p 109 (347)
T 3u0o_A 59 NGTSVISTTDF-FMPIVDNPFDFGRIAATNAISDIFAM--GGKPIMAIAILGWP 109 (347)
T ss_dssp TSEEEEEEEEE-ESCCSSCHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEEEEC
T ss_pred CCcEEEEEecC-CCCCccCHHHHHHHHHHHHHHHHHHc--CCchHHHHhheeCC
Confidence 24678888887 68999999999999999999999999 99999999999884
No 26
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=96.02 E-value=0.00056 Score=72.19 Aligned_cols=69 Identities=20% Similarity=0.320 Sum_probs=58.2
Q ss_pred CCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeC-----CCCCCccccCCCCccccccceeeeecc
Q psy5568 316 QNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAE-----THNFPTGVSPFSGATTGTGGRIRDVQA 390 (685)
Q Consensus 316 ~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~E-----THNhPsai~Pf~GAaTG~GG~iRD~~~ 390 (685)
++++.+++|+++|++.. ++..+++++. +|.+|. ++||..+...+-..+||+.+
T Consensus 18 ~~~~~g~GdDaavi~~~---------------------~~~~lv~ttD~~~~~~hf~~~-~~p~~~G~~ava~~lsDiaa 75 (319)
T 3mcq_A 18 PSAVLGVGDDAALIQPS---------------------PGMELAVSADMLVANTHFYPN-IDPWLIGWKSLAVNISDMAA 75 (319)
T ss_dssp ECTTTCCCGGGGCCCCC---------------------TTCEEEEEEEEEECCTTSCCC-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCCCCEEEEeeC---------------------CCCeEEEEecccCcccCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 36677899999999842 1356777776 599988 59999999999999999999
Q ss_pred cCCCCeeeecccceEecc
Q psy5568 391 VGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 391 ~GrGa~pia~~~~~~~g~ 408 (685)
| ||+|++-++.+++++
T Consensus 76 m--Ga~P~~~l~~l~~p~ 91 (319)
T 3mcq_A 76 M--GAQPRWATLTIALPE 91 (319)
T ss_dssp T--TCEEEEEEEEEEESS
T ss_pred c--CCchHHhEEEEECCC
Confidence 9 999999999999863
No 27
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=95.43 E-value=0.0012 Score=70.63 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=52.9
Q ss_pred cCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCC
Q psy5568 314 SNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGR 393 (685)
Q Consensus 314 ~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~Gr 393 (685)
.+++++.+++|++++++.. ++. ++++..+ ++|...+||..+...+...+||+.+|
T Consensus 42 ~~~~v~~g~GdDaAvi~~~---------------------~~~-lv~ttD~-~~~~~~~p~~~G~~ava~~lsDlaam-- 96 (345)
T 2yyd_A 42 TDESTLVSIGDDAGVYEHN---------------------GII-WVYTVDI-ITPVVNDPYLWGAISTANALSDVYAM-- 96 (345)
T ss_dssp CC---------CCCEEEET---------------------TEE-EEEEEEE-ECCSSSCHHHHHHHHHHHHHHHHHHT--
T ss_pred CCCCeeecCCCCeEEEEEC---------------------CCe-EEEEeCC-CCCccCCHHHHHHHHHHHHHHHHHHc--
Confidence 4577888999999999942 234 8888887 68989999999999999999999999
Q ss_pred CCeeeecccceEecc
Q psy5568 394 GGNCIAGTAGYCVGN 408 (685)
Q Consensus 394 Ga~pia~~~~~~~g~ 408 (685)
||+|++.++.+++++
T Consensus 97 Ga~P~~~l~~l~~p~ 111 (345)
T 2yyd_A 97 GGIPVNALAISCFNN 111 (345)
T ss_dssp TCEEEEEEEEEEECT
T ss_pred CCchHHHheeEeCCC
Confidence 999999999999875
No 28
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=93.56 E-value=0.0069 Score=63.26 Aligned_cols=81 Identities=14% Similarity=0.224 Sum_probs=63.7
Q ss_pred hHhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCC----CccccCCC
Q psy5568 300 DKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNF----PTGVSPFS 375 (685)
Q Consensus 300 ~~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNh----Psai~Pf~ 375 (685)
+..|.+.|.+ ... .++++.+.+|++++++. . +..++++..++.. +...+||.
T Consensus 8 e~~li~~i~~-~~~-~~~~~~g~gdDaavi~~-~---------------------~~~lv~ttD~~~~~~~f~~~~~p~~ 63 (311)
T 2yxz_A 8 ERALLARLAP-LGY-PPEAPLPPGDDAGGVWA-E---------------------GRAWLLKTDGFLYREVALKGMGPFE 63 (311)
T ss_dssp HHHHHHHHTT-TTC-CTTCSSCTTSSSEEEEE-T---------------------TEEEEEEEEEEEHHHHCCTTCCHHH
T ss_pred HHHHHHHHHh-cCC-CCCcccCCCCCEEEEec-C---------------------CCeEEEEeCcCCCccccCCCCCHHH
Confidence 3445555444 332 46677889999999984 1 4568888888876 67899999
Q ss_pred CccccccceeeeecccCCCCeeeecccceEe
Q psy5568 376 GATTGTGGRIRDVQAVGRGGNCIAGTAGYCV 406 (685)
Q Consensus 376 GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~ 406 (685)
++...+...+||+.+| ||+|++.++.|+.
T Consensus 64 ~G~~ava~~lsDlaa~--Ga~P~~~~~~~~~ 92 (311)
T 2yxz_A 64 VGFRGVAATASDLLAK--MGRPLGFTLGLFL 92 (311)
T ss_dssp HHHHHHHHHHHHHHHT--TEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHc--CChhhhheeeEeC
Confidence 9999999999999999 9999999888654
No 29
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=93.48 E-value=0.0076 Score=64.04 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=54.7
Q ss_pred HhhhhhhcccccccccceeEEECCccChHhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceec
Q psy5568 273 FDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTIT 352 (685)
Q Consensus 273 ~~~aq~wSEHCrhk~F~~~~~idg~~~~~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~ 352 (685)
+...-++...|--|+= +..|-+.++.......++++.+++|+|+|++..
T Consensus 12 ~l~~~~~~~GCg~K~~-----------~~~L~~~l~~l~~~~~~~~~~g~GDDaAvi~~~-------------------- 60 (345)
T 2zod_A 12 ELLKLVRSSGCAAKVG-----------PGDLQEILKGFNIYTDESTLVSIGDDAGVYEHN-------------------- 60 (345)
T ss_dssp CGGGGCC---------------------CCCCHHHHHSCCCCC---------CCCEEEET--------------------
T ss_pred HHHHHhccCCcccccC-----------HHHHHHHHHhcCCCCCCccccCCCCCeEEEecC--------------------
Confidence 3344556667777732 222222233223335578899999999999842
Q ss_pred ccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeeeecccceEec
Q psy5568 353 NQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVG 407 (685)
Q Consensus 353 ~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g 407 (685)
+..++++.- +++|.--+||..+-..+-+.++|+.+| ||+|++.++.+++.
T Consensus 61 --~~~lv~ttD-~~~~~v~~P~~~G~~Av~~~lsDiaAm--Ga~P~~~l~~l~~p 110 (345)
T 2zod_A 61 --GIIWVYTVD-IITPVVNDPYLWGAISTANALSDVYAM--GGIPVNALAISCFN 110 (345)
T ss_dssp --TEEEEEEEE-EECCSSSCHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEEEEC
T ss_pred --CcEEEEEec-CCCCcccCHHHHHHHHHHHHHHHHHHc--CCCchhhhhhhhcC
Confidence 234555554 456666689999999999999999999 99999999888874
No 30
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=91.82 E-value=0.024 Score=60.37 Aligned_cols=60 Identities=15% Similarity=0.164 Sum_probs=51.7
Q ss_pred ccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCC-----CCCCccccCCCCccccccceeeeecccCCCCee
Q psy5568 323 NDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAET-----HNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNC 397 (685)
Q Consensus 323 ~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ET-----HNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~p 397 (685)
+|++++++.. +..++++..+ |.+|. ++||.++...+.+.+||+.+| ||+|
T Consensus 61 GdDaAvi~~~----------------------~~~lv~ttD~~~~~~~f~~~-~~p~~iG~~ava~~vsDlaam--GA~P 115 (342)
T 3c9u_A 61 GDDTAPVEYC----------------------SKKLLLTTDVLNEGVHFLRS-YIPEAVGWKAISVNVSDVIAN--GGLP 115 (342)
T ss_dssp TSSSEEEEET----------------------TEEEEEEEEEEEBTTTBCTT-SCHHHHHHHHHHHHHHHHHHT--TCEE
T ss_pred CCceEEEecC----------------------CCeEEEEeCccCCCcccCCC-CCHHHHHHHHHHHHHHHHHHC--CCch
Confidence 8999999841 2456777766 88887 779999999999999999999 9999
Q ss_pred eecccceEec
Q psy5568 398 IAGTAGYCVG 407 (685)
Q Consensus 398 ia~~~~~~~g 407 (685)
++.++.++++
T Consensus 116 ~~~l~~l~~p 125 (342)
T 3c9u_A 116 KWALISLNLP 125 (342)
T ss_dssp EEEEEEEEEC
T ss_pred HHhEEEEecC
Confidence 9999999985
No 31
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=90.85 E-value=0.042 Score=59.68 Aligned_cols=67 Identities=15% Similarity=0.145 Sum_probs=56.3
Q ss_pred eeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeecccCCCCeee
Q psy5568 319 VIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCI 398 (685)
Q Consensus 319 v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~GrGa~pi 398 (685)
....+|+++|++.. +.+..++++..++ +|...+||.++...+...+||+.+| ||+|+
T Consensus 65 ~l~~GdDaAV~~~~--------------------~~~~~lv~ttD~f-~p~~~dP~~~G~~Ava~~lsDiaAm--GA~P~ 121 (394)
T 3fd5_A 65 RLGIGMDTCVIPLR--------------------HGGLSLVQTTDYI-YPIVDDPYMMGRIACANVLSDLYAM--GVTEC 121 (394)
T ss_dssp CBCTTSSSEEEECS--------------------STTCEEEEEEEEE-CCCSSCHHHHHHHHHHHHHHHHHHT--TCCCC
T ss_pred cccCCCCeeEEecC--------------------CCCcEEEEEeecc-CCcCCCHHHHHHHHHHHHHHHHHHC--CchhH
Confidence 34678999999842 1256788999997 8999999999999999999999999 99999
Q ss_pred e-cccceEecc
Q psy5568 399 A-GTAGYCVGN 408 (685)
Q Consensus 399 a-~~~~~~~g~ 408 (685)
+ -++.+++++
T Consensus 122 ~~~l~~l~~p~ 132 (394)
T 3fd5_A 122 DNMLMLLGVSN 132 (394)
T ss_dssp SEEEEEEEEET
T ss_pred HHHhhhEecCC
Confidence 8 468888864
No 32
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=89.96 E-value=0.31 Score=42.67 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=27.4
Q ss_pred cEEEEecCCCcCChhhhhHHHHHHHcCcch
Q psy5568 164 NVIEVGPRLNFSTPFCSNVLSICQSIQLHS 193 (685)
Q Consensus 164 ~~ieV~PR~G~~spwss~a~~i~~~~gl~~ 193 (685)
..|+|.+|||+.||.+......++.+|+..
T Consensus 18 ~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~ 47 (94)
T 1vq3_A 18 FAIDVQYRSNVRDPRGETIERVLREEKGLP 47 (94)
T ss_dssp EEEEEEECTTSCCHHHHHHHHHHHHTTCCC
T ss_pred EEEEEEECCCCcCcHHHHHHHHHHHcCCCc
Confidence 458999999999999999999999999864
No 33
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=89.58 E-value=0.37 Score=40.97 Aligned_cols=28 Identities=4% Similarity=0.044 Sum_probs=25.6
Q ss_pred EEEEecCCCcCChhhhhHHHHHHHcCcc
Q psy5568 165 VIEVGPRLNFSTPFCSNVLSICQSIQLH 192 (685)
Q Consensus 165 ~ieV~PR~G~~spwss~a~~i~~~~gl~ 192 (685)
.|+|.+|+|+.||.+......++.+|+.
T Consensus 5 ~V~V~lK~gvlDpqG~av~~al~~lG~~ 32 (83)
T 2yx5_A 5 TVIIKLKKGVLNPEGRTIQRALNFLGFN 32 (83)
T ss_dssp EEEEEECTTCCCHHHHHHHHHHHHTTCT
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCC
Confidence 5899999999999999888889999985
No 34
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=89.21 E-value=0.1 Score=54.95 Aligned_cols=64 Identities=27% Similarity=0.431 Sum_probs=48.4
Q ss_pred CCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCC--CCcccc---ccceeeeecc
Q psy5568 316 QNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPF--SGATTG---TGGRIRDVQA 390 (685)
Q Consensus 316 ~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf--~GAaTG---~GG~iRD~~~ 390 (685)
++++.+.+|++++++.. +..+++++.+|. .+|| +|...| +...++|+.+
T Consensus 34 ~~~~~~~gdDaav~~~~----------------------~~~lv~ttD~~~----~~~~~~~~~~iG~~ava~~lsDl~a 87 (338)
T 2z1e_A 34 GGIGLDALDDGATIPFG----------------------DKHIVFTIDGHT----VKPLFFPGGDIGRLAVSGTVNDLAV 87 (338)
T ss_dssp -------CCSCEEEEET----------------------TEEEEEEEEEEC----CSSSEETTEEHHHHHHHHHHHHHHT
T ss_pred cccCcCCCCceEEEEeC----------------------CCEEEEEeCCCc----cCccccCCccHHHHHHHHHHHHHHH
Confidence 46777889999999841 247889999986 6786 787778 8999999999
Q ss_pred cCCCCeeeecccceEec
Q psy5568 391 VGRGGNCIAGTAGYCVG 407 (685)
Q Consensus 391 ~GrGa~pia~~~~~~~g 407 (685)
| ||+|++.++.+++.
T Consensus 88 ~--Ga~P~~~~~~l~~p 102 (338)
T 2z1e_A 88 M--GAEPIALANSMIIG 102 (338)
T ss_dssp T--TCEEEEEEEEEEEE
T ss_pred c--CCchhHhEEEEecC
Confidence 9 99999999999984
No 35
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=89.09 E-value=0.42 Score=40.74 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=26.2
Q ss_pred EEEEecCCCcCChhhhhHHHHHHHcCcch
Q psy5568 165 VIEVGPRLNFSTPFCSNVLSICQSIQLHS 193 (685)
Q Consensus 165 ~ieV~PR~G~~spwss~a~~i~~~~gl~~ 193 (685)
.++|.+|+|+.||.+.....+++.+|+..
T Consensus 5 ~V~V~lK~gVlDpqG~av~~al~~LG~~~ 33 (84)
T 1t4a_A 5 KVYVSLKESVLDPQGSAVQHALHSMTYNE 33 (84)
T ss_dssp EEEEEECTTSCCHHHHHHHHHHHHTTCTT
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCCCC
Confidence 58999999999999998889999999953
No 36
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=87.84 E-value=0.51 Score=40.29 Aligned_cols=27 Identities=4% Similarity=0.070 Sum_probs=24.7
Q ss_pred EEEEecCCCcCChhhhhHHHHHHHcCc
Q psy5568 165 VIEVGPRLNFSTPFCSNVLSICQSIQL 191 (685)
Q Consensus 165 ~ieV~PR~G~~spwss~a~~i~~~~gl 191 (685)
.|+|.+|+|+.||.+......++.+|+
T Consensus 6 ~V~V~lK~gVlDpqG~av~~al~~LG~ 32 (85)
T 1gtd_A 6 EVRIRLKKGMLNPEAATIERALALLGY 32 (85)
T ss_dssp EEEEEECTTSCCHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHcCC
Confidence 589999999999999988888899998
No 37
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=86.20 E-value=0.46 Score=41.27 Aligned_cols=29 Identities=7% Similarity=-0.063 Sum_probs=25.9
Q ss_pred cEEEEecCCCcCChhhhhHHHHHHHcCcc
Q psy5568 164 NVIEVGPRLNFSTPFCSNVLSICQSIQLH 192 (685)
Q Consensus 164 ~~ieV~PR~G~~spwss~a~~i~~~~gl~ 192 (685)
..|+|.+|+|+.||.+.....+++.+|+.
T Consensus 8 ~~V~V~lK~gVlDPqG~av~~al~~LG~~ 36 (92)
T 2zw2_A 8 VELIITNKEGVRDPEGETIQRYVVSRFSD 36 (92)
T ss_dssp EEEEEEECTTSCCHHHHHHHHHTHHHHCT
T ss_pred EEEEEEECCCCcCcHHHHHHHHHHHcCCC
Confidence 35899999999999999888999999885
No 38
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=85.76 E-value=0.064 Score=56.70 Aligned_cols=79 Identities=11% Similarity=0.187 Sum_probs=55.4
Q ss_pred HhHHHHhhhhccccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCcc--
Q psy5568 301 KCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGAT-- 378 (685)
Q Consensus 301 ~sL~~~i~~t~~~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAa-- 378 (685)
+-.|+.|.+.++ +++.+.+|++++++..+ ....+..+++++.+|+ .+||-+..
T Consensus 15 ~~~~~~i~~~~~----~~~l~~gdDaavi~~~~-----------------~~~~~~~l~~t~D~~~----~dp~~~~~~~ 69 (334)
T 2rb9_A 15 QLINSLFMEAFA----NPWLAEQEDQARLDLAQ-----------------LVAEGDRLAFSTDSYV----IDPLFFPGGN 69 (334)
T ss_dssp HHHHHHHHHHHC----CTTTTTCCSSEEEEHHH-----------------HHHHCSEEEEEEEEEC----CSSSEETTEE
T ss_pred HHHHHHHHHhcC----ccccCCCCceEEEecCc-----------------ccCCCceEEEEecCcc----cCCccCCccc
Confidence 445666655442 24567889999998420 0000357899999997 68886522
Q ss_pred ---ccccceeeeecccCCCCeeeecccceEe
Q psy5568 379 ---TGTGGRIRDVQAVGRGGNCIAGTAGYCV 406 (685)
Q Consensus 379 ---TG~GG~iRD~~~~GrGa~pia~~~~~~~ 406 (685)
-.+...+||+.+| ||+|++.++.+++
T Consensus 70 iG~~ava~~lsDlaam--GA~P~~~~~~l~~ 98 (334)
T 2rb9_A 70 IGKLAICGTANDVAVS--GAIPRYLSCGFIL 98 (334)
T ss_dssp HHHHHHHHHHHHHHTT--TCCCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHC--CCchHHhEEEEec
Confidence 2356789999999 9999999999998
No 39
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=84.88 E-value=0.94 Score=38.56 Aligned_cols=29 Identities=7% Similarity=0.066 Sum_probs=25.5
Q ss_pred cEEEEecCCCcCChhhhhHHHHHHHcCcc
Q psy5568 164 NVIEVGPRLNFSTPFCSNVLSICQSIQLH 192 (685)
Q Consensus 164 ~~ieV~PR~G~~spwss~a~~i~~~~gl~ 192 (685)
..|+|.+|+|+.||.+......++.+|++
T Consensus 6 ~~V~V~lK~gVlDpqG~av~~al~~LG~~ 34 (84)
T 2dgb_A 6 ATLLIELKKGILDPQGRAVEGVLKDLGHP 34 (84)
T ss_dssp EEEEEEECTTSCCHHHHHHHHHHHHTTCC
T ss_pred EEEEEEECCCCcChHHHHHHHHHHHCCCC
Confidence 35899999999999998888888999984
No 40
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=83.60 E-value=0.091 Score=54.96 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=52.1
Q ss_pred CceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCC-CccccCCCCccccccceeeeecccCCCC
Q psy5568 317 NNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNF-PTGVSPFSGATTGTGGRIRDVQAVGRGG 395 (685)
Q Consensus 317 ~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNh-Psai~Pf~GAaTG~GG~iRD~~~~GrGa 395 (685)
+.+.+.+|++++++ . .+++++.+|++ |...+||.++.-.+...+||+.+| ||
T Consensus 14 ~~~l~~gdDaav~~--~-----------------------~l~~t~D~~v~~~~~~~~~~iG~~ava~~~sDiaam--GA 66 (314)
T 3vti_C 14 NEYIRAMEDAALLF--G-----------------------NITLTTDSFTVKPLFFPGGDIGKLAVCGTVNDASMR--GA 66 (314)
T ss_dssp SHHHHHTCSSEEET--T-----------------------TEEEEEEEECCSSSEETTEEHHHHHHHHHHHHTTTT--TE
T ss_pred CcCcCCCCCeEEec--C-----------------------ceEEEecCCccCCcccCccHHHHHHHHHHHHHHHHc--CC
Confidence 34567788888887 1 36677777765 777789999999999999999999 99
Q ss_pred eeeecccceEe
Q psy5568 396 NCIAGTAGYCV 406 (685)
Q Consensus 396 ~pia~~~~~~~ 406 (685)
+|++-++.+++
T Consensus 67 ~P~~~~~~l~~ 77 (314)
T 3vti_C 67 KPLFLTAAFII 77 (314)
T ss_dssp EEEEEEEEEEE
T ss_pred ccceeEEEEEc
Confidence 99999999988
No 41
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=79.25 E-value=0.22 Score=52.78 Aligned_cols=62 Identities=15% Similarity=0.267 Sum_probs=49.9
Q ss_pred CceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCC-----ccccccceeeeeccc
Q psy5568 317 NNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSG-----ATTGTGGRIRDVQAV 391 (685)
Q Consensus 317 ~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~G-----AaTG~GG~iRD~~~~ 391 (685)
+++.+.+|++++++. . + .++++..++. .+||-+ +...+-..+||+.+|
T Consensus 33 ~~~~~~GdDaav~~~---------------------~-~-~lv~ttD~~~----~~p~~~~~~~iG~~ava~~lsDlaam 85 (343)
T 2z1u_A 33 NPILGTLNDAARLDL---------------------T-G-PLAMSTDSYT----VDPIFFPGGDIGTLAVHGTVNDVSML 85 (343)
T ss_dssp CHHHHTCSSSCCCCC---------------------C-S-SEEEEEEEEC----CSSSEETTEEHHHHHHHHHHHHHHTT
T ss_pred CcCCCCCCceEEEEC---------------------C-C-eEEEEeCCCC----cCCeecCCccHHHHHHHHHHHHHHHc
Confidence 456678899998883 1 3 6888888886 678766 566678899999999
Q ss_pred CCCCeeeecccceEec
Q psy5568 392 GRGGNCIAGTAGYCVG 407 (685)
Q Consensus 392 GrGa~pia~~~~~~~g 407 (685)
||+|++.++.+++.
T Consensus 86 --GA~P~~~~~~l~~p 99 (343)
T 2z1u_A 86 --GARPRYLSCGFILE 99 (343)
T ss_dssp --TEEEEEEEEEEEEE
T ss_pred --CCeeHHhheeeecC
Confidence 99999999999983
No 42
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=76.84 E-value=6.9 Score=33.18 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=42.5
Q ss_pred EEEEccCCCCChHHH--HHHHhcCCCCcceEEEEEEEEEecCCCCCH---HHHHHHH-hhccccccc
Q psy5568 90 IIRYYSKPGIGAGEK--TKKLKAVPKVISDIESELCYNIEISRELTP---VELDKLH-WILNSSFEC 150 (685)
Q Consensus 90 ml~l~G~~als~fr~--l~~l~~~~~~V~~Vrte~vY~Vel~~~Ls~---ee~~~L~-~LLs~~~~~ 150 (685)
+.+.+.+.-+.+--. .+.|..++.+|.+||+..+|.++.+....+ ++.+.++ .||++|+.+
T Consensus 7 V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK~~~l~~~~~~~~~a~~~v~~~~~~LLaNpVie 73 (85)
T 1gtd_A 7 VRIRLKKGMLNPEAATIERALALLGYEVEDTDTTDVITFTMDEDSLEAVEREVEDMCQRLLCNPVIH 73 (85)
T ss_dssp EEEEECTTSCCHHHHHHHHHHHHHTCCCEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTTCCTTTE
T ss_pred EEEEECCCCcCcHHHHHHHHHHHcCCChheEEEEEEEEEEecCCCHHHHHHHHHHHHHHhcCCCcce
Confidence 444455555666554 777777777999999999999986543333 4566665 599998754
No 43
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=73.23 E-value=0.12 Score=54.75 Aligned_cols=77 Identities=10% Similarity=0.030 Sum_probs=50.6
Q ss_pred CCCceeecccccceeeccc--c-CCccccCCCCCCCCceecccceeEEEeeCCCCCCccccCCCCccccccceeeeeccc
Q psy5568 315 NQNNVIKFNDNSSAIQGYR--D-LPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAV 391 (685)
Q Consensus 315 ~~~~v~~~~dna~vi~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNhPsai~Pf~GAaTG~GG~iRD~~~~ 391 (685)
.+.++.+.+|.+++++... + ...+.- ..+...++.|+.++.++|++.-.. .+...+||+.+|
T Consensus 31 ~~~v~~giGdd~a~~~~~~~~~~~~~lv~-------~tD~~~~~~~~~~~~~~~~~iG~~--------ava~~vsDi~a~ 95 (346)
T 2btu_A 31 RKEVLGGLGGFGGMFDLSKFALEEPVLVS-------GTDGVGTKLMLAFMADKHDTIGID--------AVAMCVNDIVVQ 95 (346)
T ss_dssp CTTEECC---CCCEEECTTCCCSSEEEEE-------EEEECCTTHHHHHHHCCCSSHHHH--------HHHHHHHHHHTT
T ss_pred CCCccccccceEEEEecCccCCCCceEEE-------ecccCCchHHHHHHhcCcchHHHH--------HHHHHHHHHHHc
Confidence 4678888999999998421 0 000110 123334567777788888876433 688899999999
Q ss_pred CCCCeeeecccceEecc
Q psy5568 392 GRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 392 GrGa~pia~~~~~~~g~ 408 (685)
||+|++.++.+++++
T Consensus 96 --Ga~P~~~l~~l~~~~ 110 (346)
T 2btu_A 96 --GAEPLFFLDYIACGK 110 (346)
T ss_dssp --TCEEEEEEEEEEESS
T ss_pred --CCChHHHHHHHhcCC
Confidence 999999999888754
No 44
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=65.31 E-value=23 Score=29.82 Aligned_cols=60 Identities=8% Similarity=0.133 Sum_probs=41.6
Q ss_pred EEEEccCCCCChHHH--HHHHhcCCC-CcceEEEEEEEEEecCCCCC---HHHHHHHH-hhccccccc
Q psy5568 90 IIRYYSKPGIGAGEK--TKKLKAVPK-VISDIESELCYNIEISRELT---PVELDKLH-WILNSSFEC 150 (685)
Q Consensus 90 ml~l~G~~als~fr~--l~~l~~~~~-~V~~Vrte~vY~Vel~~~Ls---~ee~~~L~-~LLs~~~~~ 150 (685)
+.+.+.+.-+.+--. .+-+..++. +|.+||+..+|.++.+.+ . .++.+.++ .||++|+.+
T Consensus 6 V~V~lK~gVlDpqG~av~~al~~LG~~~v~~VR~gK~~~l~~~~~-~~~a~~~v~~~~~~LLaNpVie 72 (84)
T 1t4a_A 6 VYVSLKESVLDPQGSAVQHALHSMTYNEVQDVRIGKYMELTIEKS-DRDLDVLVKEMCEKLLANTVIE 72 (84)
T ss_dssp EEEEECTTSCCHHHHHHHHHHHHTTCTTEEEEEEEEEEEEEECCC-SSCHHHHHHHHHHHTTCCTTTE
T ss_pred EEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEEEEEEEecCc-hHHHHHHHHHHHHHhcCCCcce
Confidence 444455555666554 555556888 799999999999976543 2 35666775 599998754
No 45
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=65.09 E-value=9 Score=32.28 Aligned_cols=61 Identities=11% Similarity=0.141 Sum_probs=42.0
Q ss_pred EEEEccCCCCChHHH--HHHHhcCCC-CcceEEEEEEEEEecCCCCCH---HHHHHHH-hhccccccc
Q psy5568 90 IIRYYSKPGIGAGEK--TKKLKAVPK-VISDIESELCYNIEISRELTP---VELDKLH-WILNSSFEC 150 (685)
Q Consensus 90 ml~l~G~~als~fr~--l~~l~~~~~-~V~~Vrte~vY~Vel~~~Ls~---ee~~~L~-~LLs~~~~~ 150 (685)
+.+.+.+.-+.+--. .+.|+.++. +|.+||+..+|.++.+....+ ++.+.++ .||++|+.+
T Consensus 6 V~V~lK~gvlDpqG~av~~al~~lG~~~v~~Vr~gk~~~l~~~~~~~~~a~~~v~~~~~~LLaNpVie 73 (83)
T 2yx5_A 6 VIIKLKKGVLNPEGRTIQRALNFLGFNNVKEVQTYKMIDIIMEGENEEKVKEEVEEMCKKLLANPVIH 73 (83)
T ss_dssp EEEEECTTCCCHHHHHHHHHHHHTTCTTCCCCCCCEEEEEEEC-CCHHHHHHHHHHHHHHTTCCTTTE
T ss_pred EEEEECCCCcCcHHHHHHHHHHHcCCCChhhEEEEEEEEEEecCCCHHHHHHHHHHHHHHhccCCcce
Confidence 444455555666554 777888888 799999999999976543333 4555665 599998754
No 46
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=64.70 E-value=26 Score=30.50 Aligned_cols=69 Identities=12% Similarity=0.043 Sum_probs=48.2
Q ss_pred CCCccceEEEEEccCCCCChHHH--HHHHhcCCC-CcceEEEEEEEEEecCCCC---CHHHHHHHH-hhccccccc
Q psy5568 82 SPNVVQMAIIRYYSKPGIGAGEK--TKKLKAVPK-VISDIESELCYNIEISREL---TPVELDKLH-WILNSSFEC 150 (685)
Q Consensus 82 ~~~~~~m~ml~l~G~~als~fr~--l~~l~~~~~-~V~~Vrte~vY~Vel~~~L---s~ee~~~L~-~LLs~~~~~ 150 (685)
...+-+..+.+.+.+.-|.+--. ++.|+.++. +|++||+-.+|.++.+.+- .+++.+.++ .||++|+.+
T Consensus 12 ~~~~~~~~V~V~lKpgVlDPqG~aV~~aL~~LG~~~V~~VR~GK~~el~~~~~~~~~a~~~v~~mc~kLLaNpVIE 87 (94)
T 1vq3_A 12 HLPLFKFAIDVQYRSNVRDPRGETIERVLREEKGLPVKKLRLGKSIHLEVEAENKEKAYEIVKKACEELLVNPVVE 87 (94)
T ss_dssp CCCEEEEEEEEEECTTSCCHHHHHHHHHHHHTTCCCEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTTSCTTTE
T ss_pred ccceEEEEEEEEECCCCcCcHHHHHHHHHHHcCCCccceeeeeeEEEEEecCCCHHHHHHHHHHHHHHHcCCCcce
Confidence 33433445677777777887776 777777777 6999999999999865321 144556665 699998754
No 47
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=59.28 E-value=2.2 Score=45.05 Aligned_cols=88 Identities=6% Similarity=-0.102 Sum_probs=50.0
Q ss_pred hHHHHhhhhccc-cCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEeeCCCCC-----CccccCCC
Q psy5568 302 CLFEMIMDTTKH-SNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNF-----PTGVSPFS 375 (685)
Q Consensus 302 sL~~~i~~t~~~-~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~ETHNh-----Psai~Pf~ 375 (685)
.+++.|+...+. ..+.++.+.+|++++++... . . .++..++++..+.-. +..=.|+.
T Consensus 19 ~~~~~i~~~~~~~~~~~v~~g~GdD~av~~~~~-~------------~----~~~~~lv~stD~~~~~~~~~~~~~~~~~ 81 (348)
T 2z01_A 19 QAVALMKEHVQKTMRPEVLGGIGGFGGLFDLSA-L------------G----YRQPVLISGTDGVGTKLKLAFLLDRHDT 81 (348)
T ss_dssp CHHHHHHHHHHHHCCTTEECC-----CEECGGG-G------------C----CSSEEEEEEEEECCTHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHhhCCCCceeccCCccEEEecCc-c------------c----CCCcceeeecccccchHHHHHHhCCHHH
Confidence 355555422211 24668888999999998421 0 0 012235555554321 11114577
Q ss_pred CccccccceeeeecccCCCCeeeecccceEecc
Q psy5568 376 GATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 376 GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~ 408 (685)
-+.-.+...++|+.+| ||+|++.++.+++++
T Consensus 82 iG~~ava~~vsDlaa~--Ga~P~~~~~~l~~~~ 112 (348)
T 2z01_A 82 IGIDCVAMCVNDIIVQ--GAEPLFFLDYIACGK 112 (348)
T ss_dssp HHHHHHHHHHHHHHTT--TCEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHhc--CCChHHHHHHhcCCC
Confidence 7777888899999999 999999999888653
No 48
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=53.48 E-value=22 Score=30.62 Aligned_cols=61 Identities=8% Similarity=-0.015 Sum_probs=40.9
Q ss_pred EEEEccCCCCChHHH--HHHHhcCCC-CcceEEEEEEEEEecCCCCCH---HHHHHHH-hh-ccccccc
Q psy5568 90 IIRYYSKPGIGAGEK--TKKLKAVPK-VISDIESELCYNIEISRELTP---VELDKLH-WI-LNSSFEC 150 (685)
Q Consensus 90 ml~l~G~~als~fr~--l~~l~~~~~-~V~~Vrte~vY~Vel~~~Ls~---ee~~~L~-~L-Ls~~~~~ 150 (685)
+.+.+.+.-+.+--. .+-+..++. +|.+||+..+|.++++....+ ++.+.++ .| |++|+.+
T Consensus 10 V~V~lK~gVlDPqG~av~~al~~LG~~~V~~VR~gK~~~l~~~~~~~~~a~~~v~~~~~~LrLaNpVie 78 (92)
T 2zw2_A 10 LIITNKEGVRDPEGETIQRYVVSRFSDKIIETRAGKYLVFRVNSSSQQEATELVKKLADEMRLYNPIVH 78 (92)
T ss_dssp EEEEECTTSCCHHHHHHHHHTHHHHCTTEEEEEEEEEEEEEEECSSHHHHHHHHHHHHHHTTSSCTTTE
T ss_pred EEEEECCCCcCcHHHHHHHHHHHcCCCChhheEEEEEEEEEecCCCHHHHHHHHHHHHhhccccCccee
Confidence 444455556666654 454555777 799999999999986543222 4556665 59 9998754
No 49
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=53.12 E-value=39 Score=28.38 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=40.5
Q ss_pred EEEEccCCCCChHHH--HHHHhcCCCCcceEEEEEEEEEecCCCCC---HHHHHHHHhhccccccc
Q psy5568 90 IIRYYSKPGIGAGEK--TKKLKAVPKVISDIESELCYNIEISRELT---PVELDKLHWILNSSFEC 150 (685)
Q Consensus 90 ml~l~G~~als~fr~--l~~l~~~~~~V~~Vrte~vY~Vel~~~Ls---~ee~~~L~~LLs~~~~~ 150 (685)
+.+.+.+.-+.+--. .+.+..++.+|.+||+..+|.++.+.+.. .++.+.+..||++|+.+
T Consensus 8 V~V~lK~gVlDpqG~av~~al~~LG~~v~~VR~gK~~~l~~~~~~~~~a~~~v~~~~~LLaNpVie 73 (84)
T 2dgb_A 8 LLIELKKGILDPQGRAVEGVLKDLGHPVEEVRVGKVLEIVFPAENLLEAEEKAKAMGALLANPVME 73 (84)
T ss_dssp EEEEECTTSCCHHHHHHHHHHHHTTCCCSEEEEEEEEEEEEECSSHHHHHHHHHHHHHHHSCTTTE
T ss_pred EEEEECCCCcChHHHHHHHHHHHCCCChhhEEEEEEEEEEecCCCHHHHHHHHHHHHHHhCCccce
Confidence 444445555666554 66677788889999999999998653211 12244444789998754
No 50
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=41.66 E-value=6.6 Score=41.62 Aligned_cols=89 Identities=11% Similarity=-0.006 Sum_probs=46.9
Q ss_pred hHhHHHHhhhhcc-ccCCCceeecccccceeeccccCCccccCCCCCCCCceecccceeEEEee---CCCCCCcc-cc-C
Q psy5568 300 DKCLFEMIMDTTK-HSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTA---ETHNFPTG-VS-P 373 (685)
Q Consensus 300 ~~sL~~~i~~t~~-~~~~~~v~~~~dna~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~k~---ETHNhPsa-i~-P 373 (685)
...|.+.|+...+ ...+.++.+.+|.+++++... .| ++..+++.. =||=.... .+ |
T Consensus 23 ~~~~v~~i~~~~~~t~~~~v~~giGddaav~~~~~--------------~~----~~~~lv~~tD~~g~~~~~a~~~~~~ 84 (349)
T 3p4e_A 23 GNALVERIKGAVKRTRRPEVMGGLGGFGALCELPT--------------KY----KHPVLVSGTDGVGTKLRLALDMKKH 84 (349)
T ss_dssp HHHHHHHHHHHHHHTCCTTEEC------CEECCCT--------------TC----SSEEEEEEEECCTHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhccCCCCccccCCCCeEEEEccc--------------cC----CCceEEEEcCCCCcchhHHHhcCCH
Confidence 3556666653322 234678889999999998421 00 011223322 22211110 12 3
Q ss_pred CCCccccccceeeeecccCCCCeeeecccceEecc
Q psy5568 374 FSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 374 f~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~ 408 (685)
+...-=.+...+||+.+| ||+|++-++.+.+++
T Consensus 85 ~~iG~~aVa~~vsDiaam--GA~P~~~l~~l~~~~ 117 (349)
T 3p4e_A 85 DTIGIDLVAMCVNDLIVQ--GAEPLFFLDYYATGK 117 (349)
T ss_dssp SSHHHHHHHHHHHHHHTT--TCEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHc--CCcHHHHHHhhcCCC
Confidence 455556677789999999 999999998776654
No 51
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.28 E-value=61 Score=26.82 Aligned_cols=28 Identities=11% Similarity=0.240 Sum_probs=23.6
Q ss_pred hhhHHHHHHHHHhhcCCCCcHHHHHhhhhh
Q psy5568 249 EWDLEYYTDIFRNKLKRNPTSVECFDLAQS 278 (685)
Q Consensus 249 ~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~ 278 (685)
++.+..+..|| .+...||..|+..||+.
T Consensus 14 k~ql~~Lk~yF--~~n~~Ps~eei~~LA~~ 41 (71)
T 2da7_A 14 KDHMSVLKAYY--AMNMEPNSDELLKISIA 41 (71)
T ss_dssp THHHHHHHHHH--HHCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCCCHHHHHHHHHH
Confidence 34588899999 56899999999999975
No 52
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=22.58 E-value=30 Score=28.71 Aligned_cols=41 Identities=12% Similarity=0.228 Sum_probs=34.3
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHHH
Q psy5568 232 GKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVEC 272 (685)
Q Consensus 232 ~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvEl 272 (685)
+...|.++++.+|+.|..+|.+.+--+....|||-|..-|-
T Consensus 15 G~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Gd~ 55 (83)
T 3llb_A 15 ALTPVDAFNDFFGSEFSDEEFDTVGGLVMSAFGHLPKRNEV 55 (83)
T ss_dssp TTCBHHHHHHHHCCCCCTTTCSBHHHHHHHHHSSCCCTTCE
T ss_pred ccCCHHHHHHHhCCCCCCCCCcCHHHHHHHHhCcCCCCCCE
Confidence 45568899999999998888888888887889999987553
No 53
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=21.87 E-value=14 Score=38.84 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=28.4
Q ss_pred CCCccccccceeeeecccCCCCeeeecccceEecc
Q psy5568 374 FSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGN 408 (685)
Q Consensus 374 f~GAaTG~GG~iRD~~~~GrGa~pia~~~~~~~g~ 408 (685)
|.++.-.+-..+||+.+| ||+|++.++.+++++
T Consensus 50 ~~iG~~ava~~vsDiaam--GA~P~~~l~~l~~~~ 82 (334)
T 2v9y_A 50 DTIGQDLVAMCVNDILAQ--GAEPLFFLDYFSCGK 82 (334)
T ss_dssp TTHHHHHHHHHHHHHHTT--TCEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHC--CCcHHHHHHHhcCCC
Confidence 777778888999999999 999999999777543
No 54
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=21.19 E-value=84 Score=25.96 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=27.8
Q ss_pred CCChhhHHHHHHHHHhhcCCCCcHHHHHhhhhh
Q psy5568 246 AFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQS 278 (685)
Q Consensus 246 al~~~e~~~i~~~f~~~l~R~PtdvEl~~~aq~ 278 (685)
+++.+.+..++.+| ...++.|+..+...||+.
T Consensus 13 ~~s~eQL~~Lqs~f-~~~~~yPd~~~r~~La~~ 44 (71)
T 1wi3_A 13 KISLEALGILQSFI-HDVGLYPDQEAIHTLSAQ 44 (71)
T ss_dssp CCCSHHHHHHHHHH-HHHCSCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-HhcCCCCCHHHHHHHHHH
Confidence 67889999999999 455899999999999875
No 55
>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}
Probab=21.12 E-value=1.1e+02 Score=27.40 Aligned_cols=31 Identities=13% Similarity=0.130 Sum_probs=24.3
Q ss_pred cccccccceeEEECCccChHhHHHHhhhhcc
Q psy5568 282 HSRHWFFKGKMIVDGIESDKCLFEMIMDTTK 312 (685)
Q Consensus 282 HCrhk~F~~~~~idg~~~~~sL~~~i~~t~~ 312 (685)
|.|.|...|++.|+...+...||++|-...+
T Consensus 68 yPrdw~~~GRVrV~~~~sK~~Llk~IA~~I~ 98 (109)
T 3ktw_A 68 YPRDRKINFLIAVKKVKSKNYTLKIIHNALM 98 (109)
T ss_dssp CSSCTTCCCEEEEECSSSHHHHHHHHHHHHC
T ss_pred CCcccCCCCEEEEecCCCHHHHHHHHHHHHH
Confidence 5666778899999877788899998875554
No 56
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=20.43 E-value=30 Score=28.90 Aligned_cols=40 Identities=13% Similarity=0.301 Sum_probs=33.9
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHH
Q psy5568 232 GKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVE 271 (685)
Q Consensus 232 ~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvE 271 (685)
+...|.++|+.+|+.|..++.+.+--+....|||-|..-|
T Consensus 14 G~~~l~dl~~~l~~~l~~~~~dTl~G~v~~~lg~iP~~Gd 53 (87)
T 2rk5_A 14 GTMTLNDFNEYFETDLESDNVDTIAGFYLTGVGTIPSQEE 53 (87)
T ss_dssp TTSBHHHHHHHHTCCCCCTTCCBHHHHHHHHHCSCCCSSS
T ss_pred ccCCHHHHHHHhCCCCCCCCcccHHHHHHHHhCcCCCCCC
Confidence 5567889999999999888888888888888999998655
No 57
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=20.07 E-value=31 Score=28.41 Aligned_cols=40 Identities=18% Similarity=0.355 Sum_probs=34.0
Q ss_pred CHHHHHHHHHhcCCCCChhhHHHHHHHHHhhcCCCCcHHH
Q psy5568 232 GKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVE 271 (685)
Q Consensus 232 ~~~~L~~~~~~~gLal~~~e~~~i~~~f~~~l~R~PtdvE 271 (685)
+...|.++++.+|+.|..+|.+.+--+....|||-|..-|
T Consensus 15 g~~~l~dl~~~l~~~l~~~~~~Tl~G~i~~~lg~iP~~Gd 54 (81)
T 3lae_A 15 GSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGT 54 (81)
T ss_dssp TTCBHHHHHHHHCCCCCCSSCSBHHHHHHHHCSSCCCTTC
T ss_pred eeCCHHHHHHHhCCCCCCCCCccHHHHHHHHhCCCCCCCC
Confidence 4557889999999999888888888888888999998755
Done!