RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy5568
         (685 letters)



>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
           glutaminase, thioester intermediate, ligas; HET: ADP;
           1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
           3umm_A*
          Length = 1303

 Score =  368 bits (946), Expect = e-113
 Identities = 109/369 (29%), Positives = 172/369 (46%), Gaps = 37/369 (10%)

Query: 106 KKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNV 165
            + +A    + +I +E  +  +++  L   E  +L  +L          + ++      +
Sbjct: 29  ARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYG------PALSSHTPAGKL 82

Query: 166 IEVGPRLNFSTPFCSNVLSICQSI------------------------QLHSCAESFYDR 201
           + V PR    +P+ S    I  +                         Q    A   +DR
Sbjct: 83  LLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEASTLTAEQWRQVAAELHDR 142

Query: 202 MTECVYSSP--LTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGLAFDEWDLEYYTDIF 259
           M E V+SS           +P P   VD++G+G+ AL + N +LGLA  E +++Y  + F
Sbjct: 143 MMETVFSSLTDAEKLFIHHQPAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAF 202

Query: 260 RNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNV 319
             KL RNP  +E +  AQ+NSEH RH  F    I+DG    K LF+MI +T + +    +
Sbjct: 203 -TKLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPKSLFKMIKNTFETTPDYVL 261

Query: 320 IKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATT 379
             + DN++ ++G   +      +    G Y    +   I+   ETHN PT +SP+ GA T
Sbjct: 262 SAYKDNAAVMEGSA-VGRYFADHN--TGRYDFHQEPAHILMKVETHNHPTAISPWPGAAT 318

Query: 380 GTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYKLPWEDEQYGYPNNFATPLNILIEA 439
           G+GG IRD  A GRG    AG  G+ V NL IPG++ PWE++ +G P    T L+I+ E 
Sbjct: 319 GSGGEIRDEGATGRGAKPKAGLVGFSVSNLRIPGFEQPWEED-FGKPERIVTALDIMTEG 377

Query: 440 SNGASDYGN 448
             G + + N
Sbjct: 378 PLGGAAFNN 386



 Score =  210 bits (536), Expect = 1e-57
 Identities = 78/226 (34%), Positives = 118/226 (52%), Gaps = 19/226 (8%)

Query: 456 RAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPGEG 515
              A SIGE+    L+D    AR+AV EALTN+   +I D+K +K S NWM AA  PGE 
Sbjct: 699 YGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPGED 758

Query: 516 AALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTM------KHELKEKASPNVGSLV 569
           A L+DA +A+   L  ++G         +    G  +M      +   +++   +  SLV
Sbjct: 759 AGLYDAVKAVGEELCPQLG---------LTIPVGKDSMSMKTRWQEGNEQREMTSPLSLV 809

Query: 570 ISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDV 629
           IS +A   D+R  +TP + +      ++LL IDL  G + +G +AL+QV  ++     DV
Sbjct: 810 ISAFARVEDVRHTLTPQLSTE----DNALLLIDLGKGHNALGATALAQVYRQLGDKPADV 865

Query: 630 EDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGANS 675
            D A L   ++  Q L+   ++L+ HD SDGGLL+ L EM    + 
Sbjct: 866 RDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHC 911



 Score = 85.9 bits (212), Expect = 2e-17
 Identities = 30/89 (33%), Positives = 50/89 (56%), Gaps = 5/89 (5%)

Query: 1   YKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNKFGEPLILGFARSYGQ----HCNGE 56
           ++ PWE++ +G P    T L+I+ E   G + + N+FG P + G+ R+Y +    H   E
Sbjct: 353 FEQPWEED-FGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEE 411

Query: 57  RREWIKPIMFSGGIGTMKHELKEKASPNV 85
            R + KPIM +GGIG ++ +  +K    V
Sbjct: 412 LRGYHKPIMLAGGIGNIRADHVQKGEIVV 440



 Score = 48.1 bits (114), Expect = 1e-05
 Identities = 33/136 (24%), Positives = 54/136 (39%), Gaps = 21/136 (15%)

Query: 534 GNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLG 593
           G   R + KPIM +GGIG ++ +  +K    VG+ +I    P  +I             G
Sbjct: 409 GEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNI---------GLGGG 459

Query: 594 YSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLS 653
            +SS+            G S      A V+  +P++E         +   +L     +L 
Sbjct: 460 AASSMA----------SGQSDADLDFASVQRDNPEMERRCQ--EVIDRCWQLGDANPILF 507

Query: 654 GHDISDGGLLICLLEM 669
            HD+  GGL   + E+
Sbjct: 508 IHDVGAGGLSNAMPEL 523


>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
           ATP-binding, ligase, nucleotide-binding, biosynthesis;
           HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
          Length = 725

 Score = 77.3 bits (191), Expect = 7e-15
 Identities = 54/265 (20%), Positives = 86/265 (32%), Gaps = 79/265 (29%)

Query: 441 NGASDYGNIEPCSNDRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVK 500
            G  D   +        +A  + + P    + P+ GA  A+AEA  N+            
Sbjct: 426 PGKGDAAVLWIKGTRLGVAAKVDQNPRYSRLHPRLGAMHALAEACRNVS----------- 474

Query: 501 CSG----------NW--------MWAAKLPGEGAALFDACQAMSWVLPARMGN------T 536
             G          N             +L    A L +A +A+   +P   GN      +
Sbjct: 475 VVGAKPLAYTDGLNLGSPETPEGYH--ELAETIAGLKEASEALG--VPVVSGNVSLYNES 530

Query: 537 RREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSS 596
             + I P    G +G +                        ++ +      + P      
Sbjct: 531 GGKRIPPTAMVGVVGVL------------------------EVDKRAEMGFRRP----GE 562

Query: 597 SLLWIDLSCGQHRVGGSALSQVLAEVRG---PSPDVEDAAALVRAFNVTQRLIQDGQVLS 653
            LL I    G+   G S +  +L        P  D+    A+  A    + LIQ G   +
Sbjct: 563 VLLLIGEERGEL--GASEVLYLLTGKEFGHPPRLDLGREKAVQEAI---RDLIQRGLTRT 617

Query: 654 GHDISDGGLLICLLEM----DVGAN 674
            HD+++GGLL+ L EM     VGA 
Sbjct: 618 AHDVAEGGLLLALAEMTFPYGVGAT 642



 Score = 66.1 bits (162), Expect = 2e-11
 Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 63/213 (29%)

Query: 236 LQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVD 295
           ++ + +++G+   E     Y +I   +L R P  VE        SEH  +          
Sbjct: 1   MEALAKEIGIPEGE-----YREI-VQRLGREPNRVELLLFKVMWSEHCAY---------- 44

Query: 296 GIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQD 355
             ++ + L + +    +      +    +N+  ++                       + 
Sbjct: 45  --KNSRPLLKALPKEGEAV----LQGPGENAGVVR---------------------VGEG 77

Query: 356 LDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVGNLNIPGYK 415
             + F  E+HN P+ V PF GA TG GG +RD+ ++  G   IA       G        
Sbjct: 78  WAVAFKIESHNHPSAVEPFQGAATGVGGILRDIMSM--GARPIALLDSLRFGPPEEA--- 132

Query: 416 LPWEDEQYGYPNNFATPLNILIEASNGASDYGN 448
                              +L    +G + YGN
Sbjct: 133 ---------------RSRYLLKGVVSGIAFYGN 150



 Score = 32.3 bits (74), Expect = 0.56
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 11  GYPNNFATPLNILIEASNGASDYGNKFGEPLILG---FARSYGQHCNGERREWIKPIMFS 67
           G P   A    +L    +G + YGN  G P + G   F   Y             P++ +
Sbjct: 127 GPPEE-ARSRYLLKGVVSGIAFYGNAIGVPTVGGDLYFHEGY----RE------NPLVNA 175

Query: 68  GGIGTMKHE--LKEKASPN 84
             +G ++ E   + +AS  
Sbjct: 176 MCLGLLREEHLKRSRASLG 194


>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
           genomics, JCSG, PSI, protein structure initiative; 2.15A
           {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
           d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
           2hry_A*
          Length = 615

 Score = 57.7 bits (140), Expect = 7e-09
 Identities = 40/191 (20%), Positives = 61/191 (31%), Gaps = 66/191 (34%)

Query: 237 QEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDG 296
           +  +    +     +      I + KL R PT VE    +   SEH  +   K       
Sbjct: 5   KIHHHHHHMKLRYLN------ILKEKLGREPTFVELQAFSVMWSEHCGYSHTK------- 51

Query: 297 IESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDL 356
                          K+  +     F  N+  +                       +   
Sbjct: 52  ---------------KYIRRLPKTGFEGNAGVVN---------------------LDDYY 75

Query: 357 DIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVG----------RGGN----CIAGTA 402
            + F  E+HN P+ + P++GA TG GG IRDV A+G                   I G A
Sbjct: 76  SVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTAIFDSLHMSRIIDGIIEGIA 135

Query: 403 GYCVGN-LNIP 412
            Y  GN + +P
Sbjct: 136 DY--GNSIGVP 144



 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 33/226 (14%), Positives = 56/226 (24%), Gaps = 73/226 (32%)

Query: 454 NDRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG 513
            D   +     +    L D   G  +AV E++   +      L    C  N+      P 
Sbjct: 408 RDGGYSLVTHSRADLALQDTYWGTLIAVLESVRKTLSVGAEPLAITNCV-NYGDPDVDPV 466

Query: 514 EGA----ALFDACQAMSWVLPARMGN------TRREWIKPIMFSGGIGTMKHELKEKASP 563
             +    AL +AC+     +P   GN       + + I P +  G +G +          
Sbjct: 467 GLSAMMTALKNACEFSG--VPVASGNASLYNTYQGKPIPPTLVVGMLGKV---------- 514

Query: 564 NVGSLVISTYAPCPDIRQVVTPDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVR 623
                           +                S ++         VG            
Sbjct: 515 -------------NPQKVAKPKP----------SKVFA--------VGW----------- 532

Query: 624 GPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEM 669
               ++E    L RA       I+         +S   LL      
Sbjct: 533 -NDFELEREKELWRA-------IRKLSEEGAFILSSSQLLTRTHVE 570



 Score = 32.7 bits (75), Expect = 0.50
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 13/59 (22%)

Query: 21  NILIEASNGASDYGNKFGEPLILG---FARSYGQHCNGERREWIKPIMFSGGIGTMKHE 76
            I+     G +DYGN  G P + G    +  Y             P++     G ++++
Sbjct: 125 RIIDGIIEGIADYGNSIGVPTVGGELRISSLY----AH------NPLVNVLAAGVVRND 173



 Score = 30.4 bits (69), Expect = 2.5
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 15  NFATPLN---ILIEASNGASDYGNKFGEPLILGFARSYGQHCNGERREWIKPIMFSGGIG 71
           N+  P      L        +     G P+  G A  Y    N  + + I P +  G +G
Sbjct: 457 NYGDPDVDPVGLSAMMTALKNACEFSGVPVASGNASLY----NTYQGKPIPPTLVVGMLG 512

Query: 72  TMKHELKEKASPNVV 86
            +  +   K  P+ V
Sbjct: 513 KVNPQKVAKPKPSKV 527


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 45.8 bits (108), Expect = 5e-05
 Identities = 51/320 (15%), Positives = 91/320 (28%), Gaps = 117/320 (36%)

Query: 229  MGKGKVALQEVNQKLGLAFDEWD------LEYY----TDIFRNKLKRNPTSVEC-FDLAQ 277
            MG       ++ +    A D W+       + Y     DI  N    NP ++   F   +
Sbjct: 1631 MGM------DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN----NPVNLTIHFGGEK 1680

Query: 278  SNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPA 337
                   +     + IVDG    + +F+ I + +          F      +        
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS------YTFRSEKGLL----SATQ 1730

Query: 338  IT-PTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVG--RG 394
             T P    A             +   E        + F            D+++ G    
Sbjct: 1731 FTQP----A-------------LTLME-------KAAF-----------EDLKSKGLIPA 1755

Query: 395  GNCIAG------TAGYCVGNLNIPGYKLPWED-----EQYGYPNNFATPLNILIEASNGA 443
                AG       A   + ++      +  E         G     A P         G 
Sbjct: 1756 DATFAGHSLGEYAALASLADV------MSIESLVEVVFYRGMTMQVAVP-----RDELGR 1804

Query: 444  SDYGNIEPCSNDRAIATSIGEQPIKGLVDP--KR--------------------GARMAV 481
            S+YG I    N   +A S  ++ ++ +V+   KR                    G   A+
Sbjct: 1805 SNYGMIA--INPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862

Query: 482  AEALTN-LVFAKISDLKDVK 500
             + +TN L F K+  +  ++
Sbjct: 1863 -DTVTNVLNFIKLQKIDIIE 1881



 Score = 33.5 bits (76), Expect = 0.28
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 37/107 (34%)

Query: 539  EWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAPCPDIR-QVVTPDIK-----SPRL 592
            E      F    G +     +   P   +L +   A   D++ + + P        S  L
Sbjct: 1712 EHSTSYTFRSEKGLLS--ATQFTQP---ALTLMEKAAFEDLKSKGLIPADATFAGHS--L 1764

Query: 593  G-YSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDVEDAAALVRA 638
            G Y++      L+          L+ V+         +E    +V  
Sbjct: 1765 GEYAA------LAS---------LADVM--------SIESLVEVVFY 1788


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 38.7 bits (89), Expect = 0.007
 Identities = 43/315 (13%), Positives = 85/315 (26%), Gaps = 117/315 (37%)

Query: 101 AGEKTKKL-----KAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFEC----- 150
              + + L        P+ +S I   +   +        V  DKL  I+ SS        
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 151 -RKL-SSHTNFKDNSNVIEVGPRLNFSTPFCSNVLSI--CQSIQLHSCAESFYDRMTECV 206
            RK+    + F  ++++    P         + +LS+     I+  S        + +  
Sbjct: 371 YRKMFDRLSVFPPSAHI----P---------TILLSLIWFDVIK--SDVMVV---VNKLH 412

Query: 207 YSS-------PLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKL------GLAFDEWDL- 252
             S         T     I      Y+++  K +     +++ +         FD  DL 
Sbjct: 413 KYSLVEKQPKESTISIPSI------YLELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 253 -----EYY----------------TDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGK 291
                +Y+                  +FR             D            F + K
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF---------LDFR----------FLEQK 506

Query: 292 MIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTI 351
           +  D    +      I++T                  ++ Y+    I   +P     Y  
Sbjct: 507 IRHDSTAWNAS--GSILNT-----------LQQ----LKFYKPY--ICDNDP----KYER 543

Query: 352 TNQDL-DIIFTAETH 365
               + D +   E +
Sbjct: 544 LVNAILDFLPKIEEN 558


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 29.7 bits (66), Expect = 2.3
 Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 231 KGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSE 281
             KV  QE  +K     +EW+      + +NK   N  + + F   Q +++
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNK-INNRIADKAF-YQQPDAD 152


>3mpy_A Ethanolamine utilization protein EUTM; bacterial microcompartment,
           shell protein, ethanolamine AMMO lyase, carboxysome,
           membrane protein; 2.00A {Escherichia coli} PDB: 3mpw_G
           3i6p_A
          Length = 103

 Score = 28.5 bits (64), Expect = 2.7
 Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 9/53 (16%)

Query: 621 EVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGA 673
           E RG    +E + A+V+A  V          L G     GGL   ++  DV A
Sbjct: 8   ETRGLVALIEASDAMVKAARVK---------LVGVKQIGGGLCTAMVRGDVAA 51


>3bn4_A Carbon dioxide-concentrating mechanism protein CC 1; hexamer,
           structural protein; 2.00A {Synechocystis SP}
          Length = 122

 Score = 28.7 bits (64), Expect = 2.8
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 619 LAEVRGPSPDVEDAAALVRAFNVTQRLIQDGQVLSGHDISDGGLLICLLEMDVGA 673
           + E  G    VE A ++V+A  VT         L G++    G +  ++  DV  
Sbjct: 7   MIETLGFPAVVEAADSMVKAARVT---------LVGYEKIGSGRVTVIVRGDVSE 52


>3h2g_A Esterase; xanthomonas oryzae PV. oryzae, cell WALL degrading
           enzyme, RICE, virulence, innate immune responses,
           pathogenesis; 1.86A {Xanthomonas oryzae PV} PDB: 3h2j_A
           3h2k_A* 3h2h_A 3h2i_A
          Length = 397

 Score = 29.5 bits (65), Expect = 4.1
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 512 PGEGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMKH--ELKEKASPNVGSLV 569
             E +A  DA +A   VL         + +      GG   M    E++   S     + 
Sbjct: 142 ASEASATIDAMRAARSVLQHLKTPLSGKVMLSGYSQGGHTAMATQREIEAHLSKEFHLVA 201

Query: 570 ISTYAPCPDIRQVVTPDIKSP 590
            +  +    + Q         
Sbjct: 202 SAPISGPYALEQTFLDSWSGS 222


>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl
           transferase, structural genomics, PSI, protein structure
           initiative; HET: B1M; 1.70A {Moorella thermoacetica}
          Length = 210

 Score = 28.0 bits (63), Expect = 9.0
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 610 VGGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQRLIQ 647
           VGG+ LSQ  A+  G      DAA    A  + ++L++
Sbjct: 176 VGGAPLSQDFADEIGADGYAPDAA---SATELCRQLLE 210


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0598    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,733,098
Number of extensions: 658317
Number of successful extensions: 1254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1245
Number of HSP's successfully gapped: 27
Length of query: 685
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 585
Effective length of database: 3,909,693
Effective search space: 2287170405
Effective search space used: 2287170405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.6 bits)