RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5568
(685 letters)
>d1t3ta4 d.79.4.1 (A:221-429) FGAM synthase PurL, PurM-like module,
N1 and N2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 209
Score = 151 bits (382), Expect = 1e-42
Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 288 FKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPG 347
F I+DG K LF+MI +T + + + + DN++ ++G G
Sbjct: 2 FNADWIIDGKPQPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGS---AVGRYFADHNTG 58
Query: 348 PYTITNQDLDIIFTAETHNFPTGVSPFSGATTGTGGRIRDVQAVGRGGNCIAGTAGYCVG 407
Y + I+ ETHN PT +SP+ GA TG+GG IRD A GRG AG G+ V
Sbjct: 59 RYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVGFSVS 118
Query: 408 NLNIPGYKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNI 449
NL IPG++ PWE++ +G P T L+I+ E G + + N
Sbjct: 119 NLRIPGFEQPWEED-FGKPERIVTALDIMTEGPLGGAAFNNE 159
Score = 69.3 bits (169), Expect = 5e-14
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 5/84 (5%)
Query: 1 YKLPWEDEQYGYPNNFATPLNILIEASNGASDYGNKFGEPLILGFARSYGQHCN----GE 56
++ PWE++ +G P T L+I+ E G + + N+FG P + G+ R+Y + N E
Sbjct: 125 FEQPWEED-FGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTYEEKVNSHNGEE 183
Query: 57 RREWIKPIMFSGGIGTMKHELKEK 80
R + KPIM +GGIG ++ + +K
Sbjct: 184 LRGYHKPIMLAGGIGNIRADHVQK 207
Score = 37.4 bits (86), Expect = 0.003
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 534 GNTRREWIKPIMFSGGIGTMKHELKEK 560
G R + KPIM +GGIG ++ + +K
Sbjct: 181 GEELRGYHKPIMLAGGIGNIRADHVQK 207
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 68
Score = 98.7 bits (246), Expect = 8e-26
Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 219 KPDPWFYVDVMGKGKVALQEVNQKLGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQS 278
+P P VD++G+G+ AL + N +LGLA E +++Y + F KL RNP +E + AQ+
Sbjct: 2 QPAPVSSVDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFT-KLGRNPNDIELYMFAQA 60
Query: 279 NSEHSRH 285
NSEH RH
Sbjct: 61 NSEHCRH 67
>d1t3ta5 d.79.4.1 (A:617-816) FGAM synthase PurL, PurM-like module,
N1 and N2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 200
Score = 89.4 bits (221), Expect = 4e-21
Identities = 50/137 (36%), Positives = 68/137 (49%), Gaps = 15/137 (10%)
Query: 454 NDRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKCSGNWMWAAKLPG 513
+ A SIGE+ L+D AR+AV EALTN+ +I D+K +K S NWM AA PG
Sbjct: 73 SYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANWMAAAGHPG 132
Query: 514 EGAALFDACQAMSWVLPARMGNTRREWIKPIMFSGGIGTMK------HELKEKASPNVGS 567
E A L+DA +A+ + I +MK +E +E SP S
Sbjct: 133 EDAGLYDAVKAV-------GEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSP--LS 183
Query: 568 LVISTYAPCPDIRQVVT 584
LVIS +A D+R +T
Sbjct: 184 LVISAFARVEDVRHTLT 200
>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine
synthase II, domains 1 and 3 {Thermotoga maritima
[TaxId: 2336]}
Length = 165
Score = 75.1 bits (184), Expect = 2e-16
Identities = 35/151 (23%), Positives = 51/151 (33%), Gaps = 43/151 (28%)
Query: 255 YTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHS 314
Y +I + KL R PT VE + SEH + K K+
Sbjct: 4 YLNILKEKLGREPTFVELQAFSVMWSEHCGYSHTK----------------------KYI 41
Query: 315 NQNNVIKFNDNSSAIQGYRDLPAITPTNPGAPGPYTITNQDLDIIFTAETHNFPTGVSPF 374
+ F N+ + + F E+HN P+ + P+
Sbjct: 42 RRLPKTGFEGNAGVVNLDDYYS---------------------VAFKIESHNHPSAIEPY 80
Query: 375 SGATTGTGGRIRDVQAVGRGGNCIAGTAGYC 405
+GA TG GG IRDV A+G I +
Sbjct: 81 NGAATGVGGIIRDVLAMGARPTAIFDSLHMS 111
Score = 41.2 bits (96), Expect = 1e-04
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 21 NILIEASNGASDYGNKFGEPLILGFARSYGQHCNGERREWIKPIMFSGGIGTMKHE 76
I+ G +DYGN G P + G R + + P++ G ++++
Sbjct: 112 RIIDGIIEGIADYGNSIGVPTVGGELRISSLYAH-------NPLVNVLAAGVVRND 160
Score = 40.4 bits (94), Expect = 2e-04
Identities = 19/118 (16%), Positives = 39/118 (33%), Gaps = 8/118 (6%)
Query: 442 GASDYGNIEPCSNDRAIATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKDVKC 501
G + + ++A I ++P GA V + + V A + +
Sbjct: 48 GFEGNAGVVNLDDYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRD-VLAMGARPTAIFD 106
Query: 502 SGNWMWAAKLPGEGAALFDACQAMSWVLPARMGNTR---REWIKPIMFSGGIGTMKHE 556
S + EG A D ++ +P G R P++ G ++++
Sbjct: 107 SLHMSRIIDGIIEGIA--DYGNSIG--VPTVGGELRISSLYAHNPLVNVLAAGVVRND 160
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like
module, C1 and C2 domains {Salmonella typhimurium
[TaxId: 90371]}
Length = 217
Score = 73.7 bits (180), Expect = 2e-15
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 585 PDIKSPRLGYSSSLLWIDLSCGQHRVGGSALSQVLAEVRGPSPDVEDAAALVRAFNVTQR 644
P + + ++LL IDL G + +G +AL+QV ++ DV D A L ++ Q
Sbjct: 1 PQLSTE----DNALLLIDLGKGHNALGATALAQVYRQLGDKPADVRDVAQLKGFYDAMQA 56
Query: 645 LIQDGQVLSGHDISDGGLLICLLEM 669
L+ ++L+ HD SDGGLL+ L EM
Sbjct: 57 LVAARKLLAWHDRSDGGLLVTLAEM 81
>d1t3ta3 d.284.1.2 (A:1-152) FGAM synthase PurL, PurS-like domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 152
Score = 71.6 bits (175), Expect = 3e-15
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 30/129 (23%)
Query: 106 KKLKAVPKVISDIESELCYNIEISRELTPVELDKLHWILNSSFECRKLSSHTNFKDNSNV 165
+ +A + +I +E + +++ L E +L +L ++ +
Sbjct: 21 ARFQAANLQVHNIYAEYVHFADLNAPLNDSEQAQLTRLLQYGPAL------SSHTPAGKL 74
Query: 166 IEVGPRLNFSTPFCSNVLSICQSI------------------------QLHSCAESFYDR 201
+ V PR +P+ S I + Q A +DR
Sbjct: 75 LLVTPRPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEASTLTAEQWRQVAAELHDR 134
Query: 202 MTECVYSSP 210
M E V+SS
Sbjct: 135 MMETVFSSL 143
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 29.2 bits (65), Expect = 1.3
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 466 PIKGLVDPKRGARMAVAEAL 485
PI + D + ++++ E +
Sbjct: 3 PIAAIFDTENLEKISITEGI 22
>d2a9sa1 c.51.5.1 (A:1-167) Competence/damage-inducible protein CinA
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 167
Score = 27.8 bits (61), Expect = 2.8
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 474 KRGARMAVAEALT-NLVFAKISD-------LKDVKCSGNWMWAAKLPGEGAALFDACQAM 525
G ++ AE+ T L+ +++ + + + G G A+
Sbjct: 21 PLGLMVSTAESCTGGLIAGALTEIAGSSAVVDRGFVTYTNDAKRDMLGVGTETLTTFGAV 80
Query: 526 SWVLPARMGNTRREWIKPIMFSGGIGTMKHELKEKASPNVGSLVISTYAP 575
S +M + + G P VG + ++T A
Sbjct: 81 SRQTALQMAHGALYRSRANFAVAVTGIAGPGGGSAEKP-VGLVHLATKAR 129
>d1lm7a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 240
Score = 28.0 bits (62), Expect = 3.2
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 462 IGEQPIKGLVDPKRGARMAVAEAL 485
G I G+ + ++ + EA+
Sbjct: 47 QGSSCIAGIYNETTKQKLGIYEAM 70
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 27.0 bits (59), Expect = 4.7
Identities = 10/61 (16%), Positives = 23/61 (37%)
Query: 273 FDLAQSNSEHSRHWFFKGKMIVDGIESDKCLFEMIMDTTKHSNQNNVIKFNDNSSAIQGY 332
A + + K K+I + +T+ H +V+ F+D+++ G
Sbjct: 24 LATAAKLKANPQPELLKHKVIASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGK 83
Query: 333 R 333
+
Sbjct: 84 K 84
>d3etja3 d.142.1.2 (A:79-276) N5-carboxyaminoimidazole
ribonucleotide synthetase PurK (AIRC), domain 2
{Escherichia coli [TaxId: 562]}
Length = 198
Score = 27.0 bits (58), Expect = 5.8
Identities = 22/180 (12%), Positives = 48/180 (26%), Gaps = 8/180 (4%)
Query: 14 NNFATPLNILIEASNGASDYGNKFGEPLILGFARSYGQHCNGERREWIKPIMFSGGIGTM 73
+ T L+ + ++ GE I+ R +
Sbjct: 12 LHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGE 71
Query: 74 KHELKEKASPNVVQMAIIRYYSKPGIGAGE-KTKKLKAVPKVISDIESELCYNIEISREL 132
+ V + R + + + + + E+
Sbjct: 72 CIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQARAEEM 131
Query: 133 TPVELDKLHWILNSSFECRKLSSHTNFKDNSNVIEVGPRLNFSTPFCSNVLSICQSIQLH 192
+ +L ++ + EC + E+ PR++ S + N SI Q +LH
Sbjct: 132 LSAIMQELGYVGVMAMECF------VTPQGLLINELAPRVHNSGHWTQNGASISQ-FELH 184
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 27.4 bits (60), Expect = 6.0
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 456 RAIATSIGEQPIKGLVDPKRGARMAVAEAL 485
A + ++ L +P R+A+A L
Sbjct: 204 LAAVEHASLEALRELDEPDPEVRLAIAGRL 233
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 26.8 bits (58), Expect = 9.3
Identities = 17/156 (10%), Positives = 42/156 (26%), Gaps = 6/156 (3%)
Query: 141 HWILNSSFECRKLSSHTNFKDNSNVIEVGPRLNFSTPFCSNVLSICQSIQLHSCAESFYD 200
+++ + ++ N K+ V E+G T + + I + + ++
Sbjct: 10 NFLTSEKV-LNQIIKQLNLKETDTVYEIGTGKGHLT---TKLAKISKQVTSIELDSHLFN 65
Query: 201 RMTECVYSSPLTSFNHGIKPDPWFYVDVMGK--GKVALQEVNQKLGLAFDEWDLEYYTDI 258
+E + + + H F K G + Q + E I
Sbjct: 66 LSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYLI 125
Query: 259 FRNKLKRNPTSVECFDLAQSNSEHSRHWFFKGKMIV 294
+ + +++ S K
Sbjct: 126 VEEGFYKRTLDIHRTLGLLLHTQVSIQQLLKLPAEC 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.419
Gapped
Lambda K H
0.267 0.0394 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,654,014
Number of extensions: 127545
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 288
Number of HSP's successfully gapped: 22
Length of query: 685
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 594
Effective length of database: 1,158,166
Effective search space: 687950604
Effective search space used: 687950604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)