BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5569
(110 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VWA1|CLC_DROME Clathrin light chain OS=Drosophila melanogaster GN=Clc PE=2 SV=1
Length = 219
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/60 (68%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 50 LLFLNAEKQFVA-EVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLK 108
L NAEKQ E IEPGTEWERIAKLCDFNPKV + KDVSRMRSI L LKQ P++
Sbjct: 155 LASRNAEKQAATLENGTIEPGTEWERIAKLCDFNPKVNKAGKDVSRMRSIYLHLKQNPIQ 214
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Query: 4 FGDNF--DDNVDPAAEFLAREQNQLAGLEDELQPAVA 38
FGD+F ++VDPAAEFLAREQ+ L LE E+ A
Sbjct: 3 FGDDFAAKEDVDPAAEFLAREQSALGDLEAEITGGSA 39
>sp|O08585|CLCA_MOUSE Clathrin light chain A OS=Mus musculus GN=Clta PE=1 SV=2
Length = 235
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 45/56 (80%)
Query: 52 FLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
++ AE+ FV ++D+ PGTEWER+A+LCDFNPK + KDVSRMRS+++ LKQ PL
Sbjct: 178 YVAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 233
>sp|P08081|CLCA_RAT Clathrin light chain A OS=Rattus norvegicus GN=Clta PE=1 SV=1
Length = 248
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 34 QPAVAVNATINGMTNSLLFLN--AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKD 91
QP V + + + L AE+ FV ++D+ PGTEWER+A+LCDFNPK + KD
Sbjct: 171 QPFADVIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKD 230
Query: 92 VSRMRSIILQLKQTPL 107
VSRMRS+++ LKQ PL
Sbjct: 231 VSRMRSVLISLKQAPL 246
>sp|P09496|CLCA_HUMAN Clathrin light chain A OS=Homo sapiens GN=CLTA PE=1 SV=1
Length = 248
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/76 (48%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 34 QPAVAVNATINGMTNSLLFLN--AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKD 91
QP V + + + L AE+ FV ++D+ PGTEWER+A+LCDFNPK + KD
Sbjct: 171 QPFADVIGYVTNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKD 230
Query: 92 VSRMRSIILQLKQTPL 107
VSRMRS+++ LKQ PL
Sbjct: 231 VSRMRSVLISLKQAPL 246
>sp|P04973|CLCA_BOVIN Clathrin light chain A OS=Bos taurus GN=CLTA PE=1 SV=1
Length = 243
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Query: 34 QPAVAVNATINGMTNSLLFLN--AEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKD 91
QP V + + + L AE+ FV ++++ PGTEWER+A+LCDFNPK + KD
Sbjct: 166 QPFADVIGYVTNINHPCYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKD 225
Query: 92 VSRMRSIILQLKQTPL 107
VSRMRS+++ LKQ PL
Sbjct: 226 VSRMRSVLISLKQAPL 241
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 3 AFGDNFDDNVDPAAEFLAREQNQLAGLEDE 32
A G+ DPAA FLA++++++AG+E++
Sbjct: 15 ALGNGVAGEEDPAAAFLAQQESEIAGIEND 44
>sp|P08082|CLCB_RAT Clathrin light chain B OS=Rattus norvegicus GN=Cltb PE=1 SV=1
Length = 229
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 48/62 (77%)
Query: 48 NSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
+++ ++ +E+ FV E + PGTEWE++A+LCDFNPK + KDVSR+RS+++ LKQTPL
Sbjct: 168 DTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
Query: 108 KK 109
+
Sbjct: 228 SR 229
>sp|Q6IRU5|CLCB_MOUSE Clathrin light chain B OS=Mus musculus GN=Cltb PE=2 SV=1
Length = 229
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 48/62 (77%)
Query: 48 NSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
+++ ++ +E+ FV E + PGTEWE++A+LCDFNPK + KDVSR+RS+++ LKQTPL
Sbjct: 168 DTIGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
Query: 108 KK 109
+
Sbjct: 228 SR 229
>sp|P09497|CLCB_HUMAN Clathrin light chain B OS=Homo sapiens GN=CLTB PE=1 SV=1
Length = 229
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 50 LLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
+ ++ +E+ FV E + PGTEWE++A+LCDFNPK + KDVSR+RS+++ LKQTPL +
Sbjct: 170 IGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 229
>sp|P04975|CLCB_BOVIN Clathrin light chain B OS=Bos taurus GN=CLTB PE=1 SV=1
Length = 228
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 46/60 (76%)
Query: 50 LLFLNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLKK 109
+ ++ +E+ FV E + PGTEWE++A+LCDFNPK + KDVSR+RS+++ LKQTPL +
Sbjct: 169 IGYVASEEAFVKESKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPLSR 228
>sp|Q8MN58|CLC_DICDI Clathrin light chain OS=Dictyostelium discoideum GN=clc PE=1 SV=1
Length = 194
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 72 WERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPL 107
WE + + D K NKD SRMR I+++LK P+
Sbjct: 158 WESVVSMIDLQAKPNPANKDTSRMREILIRLKNQPI 193
>sp|Q1EHB3|ATS7_RAT A disintegrin and metalloproteinase with thrombospondin motifs 7
OS=Rattus norvegicus GN=Adamts7 PE=1 SV=1
Length = 1595
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 12 VDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTE 71
V+P A FL E++ + E L A+++GM S+ N ++ V E +P T
Sbjct: 1130 VNPLANFLTEEESPIGAPELGLPSVSWPPASVDGMVTSVAPGNPDELLVREDTQSQPSTP 1189
Query: 72 WERIAKLC-DFNP 83
W KL D NP
Sbjct: 1190 WSDRNKLSKDGNP 1202
>sp|Q1CS74|SYH_HELPH Histidine--tRNA ligase OS=Helicobacter pylori (strain HPAG1)
GN=hisS PE=3 SV=1
Length = 442
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 22 EQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDF 81
E+ L G+E+EL+ +N+ LL + KQ DD+ +E+IA L D+
Sbjct: 189 EKIGLNGVEEELKKECDLNSN---TIKELLEMVQIKQ-----DDLSHAEFFEKIAYLKDY 240
Query: 82 NPKVGRTNKDVSRMRSII--LQLKQTPLKKD 110
N + + +D+ R+ ++ LQ+ Q K D
Sbjct: 241 NENLKKGIQDLERLYQLLGDLQISQNLYKID 271
>sp|P56455|SYH_HELPY Histidine--tRNA ligase OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=hisS PE=3 SV=1
Length = 442
Score = 30.4 bits (67), Expect = 3.8, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 22 EQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWERIAKLCDF 81
E+ L G+E+EL+ +N+ LL L KQ +D+ +E+IA L D+
Sbjct: 189 EKIGLNGVEEELKKECGLNSN---TIKELLELIQIKQ-----NDLSHAEFFEKIAYLKDY 240
Query: 82 NPKVGRTNKDVSRMRSII--LQLKQTPLKKD 110
N + + +D+ R+ ++ LQ+ Q K D
Sbjct: 241 NENLKKGIQDLERLYQLLGDLQISQNLYKID 271
>sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009 OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=CT0009 PE=3
SV=1
Length = 483
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 18 FLAREQNQLAGLEDELQPAVA---VNATINGMTNSLLFLNAEKQFVAEVDDIEP 68
+LAR Q G+E ++ AV +NA +NG++N++ F K F A + +EP
Sbjct: 350 YLARHCKQAIGIE-VVESAVKDAEMNAELNGLSNTVFFQADLKNFHAMQEALEP 402
>sp|Q9LVT3|DRL38_ARATH Probable disease resistance protein At5g47260 OS=Arabidopsis
thaliana GN=At5g47260 PE=3 SV=2
Length = 948
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 5 GDNFDDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLF------------ 52
G+NF A FL ++ L LE L+ V +N M N LL
Sbjct: 2 GNNFSVESPSLAPFLCGKRKYLYNLERNLEALHKVMQDLNAMRNDLLKRLSKEEEIGLQG 61
Query: 53 LNAEKQFVAEVDDIEP 68
L K++++ V++IEP
Sbjct: 62 LQEVKEWISMVEEIEP 77
>sp|Q3AQZ8|MUTS_CHLCH DNA mismatch repair protein MutS OS=Chlorobium chlorochromatii
(strain CaD3) GN=mutS PE=3 SV=1
Length = 873
Score = 29.3 bits (64), Expect = 8.5, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 15 AAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFLNAEKQFVAEVDDIEPGTEWER 74
A A ++LA LE+ L+ V NAT+ ++FL ++ V D G E +
Sbjct: 735 AKTLFATHYHELAELEERLKGVVNYNATVVETAERVIFL---RKIVRGATDNSYGIEVAK 791
Query: 75 IAKLCDFNPKVGRTNKDVSRMRSIILQLKQ 104
+A G N +SR R I+ L++
Sbjct: 792 MA---------GMPNDVISRAREILAGLEK 812
>sp|Q9USP6|CLC1_SCHPO Clathrin light chain OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=clc1 PE=1 SV=1
Length = 229
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 70 TEWERIAKLCDFNPKVGRTNKDVSRMRSIILQL 102
T WERI KL D + K + R R +++ L
Sbjct: 179 TSWERILKLIDLSDKPEAHGRSTERFRELLISL 211
>sp|B9LM83|ILVD_CHLSY Dihydroxy-acid dehydratase OS=Chloroflexus aurantiacus (strain ATCC
29364 / DSM 637 / Y-400-fl) GN=ilvD PE=3 SV=1
Length = 561
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 33 LQPAVAVNATINGMTNSLLFLNA---EKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTN 89
L+ A+AV + G TN++L L A +DD E T +R+ LCD P
Sbjct: 258 LENAIAVVMALGGSTNAVLHLLAIAHAADVPLTIDDFE--TIRQRVPVLCDLKPSGRYVA 315
Query: 90 KDVSRM 95
D+ R+
Sbjct: 316 TDLHRV 321
>sp|A9WF68|ILVD_CHLAA Dihydroxy-acid dehydratase OS=Chloroflexus aurantiacus (strain ATCC
29366 / DSM 635 / J-10-fl) GN=ilvD PE=3 SV=1
Length = 561
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 33 LQPAVAVNATINGMTNSLLFLNA---EKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTN 89
L+ A+AV + G TN++L L A +DD E T +R+ LCD P
Sbjct: 258 LENAIAVVMALGGSTNAVLHLLAIAHAADVPLTIDDFE--TIRQRVPVLCDLKPSGRYVA 315
Query: 90 KDVSRM 95
D+ R+
Sbjct: 316 TDLHRV 321
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,321,953
Number of Sequences: 539616
Number of extensions: 1420223
Number of successful extensions: 3383
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3362
Number of HSP's gapped (non-prelim): 32
length of query: 110
length of database: 191,569,459
effective HSP length: 78
effective length of query: 32
effective length of database: 149,479,411
effective search space: 4783341152
effective search space used: 4783341152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)