Query psy5569
Match_columns 110
No_of_seqs 114 out of 135
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 20:51:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvh_D LCB, clathrin light cha 98.8 7.3E-11 2.5E-15 91.8 -3.6 36 1-36 2-45 (205)
2 3lvg_D LCB, clathrin light cha 92.7 0.0046 1.6E-07 47.5 -3.6 69 11-79 83-165 (190)
3 1xi4_J LCA, clathrin light cha 85.0 0.37 1.3E-05 31.5 1.6 50 11-60 7-70 (70)
4 2yum_A ZZZ3 protein, zinc fing 70.6 9.7 0.00033 23.5 5.0 50 53-107 13-67 (75)
5 3sjm_A Telomeric repeat-bindin 64.2 3.5 0.00012 25.5 1.9 43 54-99 17-59 (64)
6 2cqq_A RSGI RUH-037, DNAJ homo 63.6 12 0.00042 23.7 4.5 44 52-101 12-57 (72)
7 2cjj_A Radialis; plant develop 61.6 17 0.00059 24.2 5.1 43 52-99 12-57 (93)
8 2cu7_A KIAA1915 protein; nucle 58.7 23 0.00078 21.8 5.0 48 53-107 14-62 (72)
9 1w0t_A Telomeric repeat bindin 52.9 4.5 0.00016 23.6 0.9 28 70-99 23-50 (53)
10 2cqr_A RSGI RUH-043, DNAJ homo 49.5 19 0.00066 22.9 3.6 29 52-80 22-52 (73)
11 1ity_A TRF1; helix-turn-helix, 43.2 7.8 0.00027 23.7 0.9 44 54-100 16-59 (69)
12 2b7e_A PRE-mRNA processing pro 42.9 21 0.00072 22.4 2.9 27 54-80 4-32 (59)
13 3hxi_C Eukaryotic translation 40.8 13 0.00043 19.3 1.3 12 96-107 10-21 (21)
14 1wgx_A KIAA1903 protein; MYB D 40.0 23 0.0008 22.8 2.9 29 52-80 12-42 (73)
15 1ik9_C DNA ligase IV; DNA END 32.2 18 0.00062 20.4 1.2 14 2-15 12-25 (37)
16 2yus_A SWI/SNF-related matrix- 28.1 38 0.0013 21.6 2.4 27 52-80 22-48 (79)
17 1x41_A Transcriptional adaptor 26.0 53 0.0018 19.3 2.6 27 53-80 13-39 (60)
18 1uzc_A Hypothetical protein FL 25.5 60 0.0021 20.5 2.9 32 52-83 14-47 (71)
19 4eef_G F-HB80.4, designed hema 22.8 34 0.0012 22.5 1.4 38 52-94 24-63 (74)
20 2dod_A Transcription elongatio 21.6 86 0.0029 20.3 3.2 30 54-83 18-49 (82)
21 2obp_A Putative DNA-binding pr 20.3 33 0.0011 22.9 0.9 36 66-108 31-66 (96)
No 1
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}
Probab=98.84 E-value=7.3e-11 Score=91.83 Aligned_cols=36 Identities=36% Similarity=0.606 Sum_probs=0.0
Q ss_pred CCcCC------C--CCCCCCChHHHHHHHHHHHhhCcccccchh
Q psy5569 1 MDAFG------D--NFDDNVDPAAEFLAREQNQLAGLEDELQPA 36 (110)
Q Consensus 1 m~~~~------d--~f~~~~dpaaeflAreq~~la~~ede~~~~ 36 (110)
|++|| . .+..|+||||+||||+|+.|||||++...+
T Consensus 2 ~ddFg~~~~~~~g~~~~~EeDPAAaFLAqqeseIAGIEnDegf~ 45 (205)
T 3lvh_D 2 ADDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFG 45 (205)
T ss_dssp --------------------------------------------
T ss_pred cccccccccccCCCCCccccChHHHHHHhhHHHhcccccccccC
Confidence 57777 2 233499999999999999999999985433
No 2
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}
Probab=92.72 E-value=0.0046 Score=47.53 Aligned_cols=69 Identities=9% Similarity=0.043 Sum_probs=47.6
Q ss_pred CCChHHHHHHHHHHHhhCcccccchh-----hhhhhhcccccch---------hhcHHHHHHHHHhhccCCCCChhHHHH
Q psy5569 11 NVDPAAEFLAREQNQLAGLEDELQPA-----VAVNATINGMTNS---------LLFLNAEKQFVAEVDDIEPGTEWERIA 76 (110)
Q Consensus 11 ~~dpaaeflAreq~~la~~ede~~~~-----~~~~~~i~~~~~~---------~~NR~~Ee~fl~~~~~~~~gt~WERIa 76 (110)
|+...=++..+....|+.+....... ++|...|+.+|.. .+||.+|++||++++++..|..|.--.
T Consensus 83 EPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKnKa~NR~aEEeFLaqRddttiGyV~~~~~ 162 (190)
T 3lvg_D 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIXXXXXXXX 162 (190)
T ss_dssp STTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSTTTSSHHHHHHHCCTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCccchhhhhccccc
Confidence 55555566666555555442222111 5667778888864 899999999999999999999998554
Q ss_pred hhh
Q psy5569 77 KLC 79 (110)
Q Consensus 77 kLi 79 (110)
...
T Consensus 163 ~~~ 165 (190)
T 3lvg_D 163 XXX 165 (190)
T ss_dssp HHH
T ss_pred ccc
Confidence 444
No 3
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=84.97 E-value=0.37 Score=31.48 Aligned_cols=50 Identities=8% Similarity=0.095 Sum_probs=35.1
Q ss_pred CCChHHHHHHHHHHHhhCcccccchh-----hhhhhhcccccch---------hhcHHHHHHHH
Q psy5569 11 NVDPAAEFLAREQNQLAGLEDELQPA-----VAVNATINGMTNS---------LLFLNAEKQFV 60 (110)
Q Consensus 11 ~~dpaaeflAreq~~la~~ede~~~~-----~~~~~~i~~~~~~---------~~NR~~Ee~fl 60 (110)
++.+.-++..+....|+.+....... ..|.-.|++||.. .+||.++++||
T Consensus 7 EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl 70 (70)
T 1xi4_J 7 EPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY 70 (70)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 56666677777777776654333211 5667779999874 89999999996
No 4
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.59 E-value=9.7 Score=23.50 Aligned_cols=50 Identities=20% Similarity=0.415 Sum_probs=31.8
Q ss_pred HHHHHHHHHhhccCCC----CChhHHHHhhhcCCCCCCCCcch-HHHHHHHHHHhhcCCC
Q psy5569 53 LNAEKQFVAEVDDIEP----GTEWERIAKLCDFNPKVGRTNKD-VSRMRSIILQLKQTPL 107 (110)
Q Consensus 53 R~~Ee~fl~~~~~~~~----gt~WERIakLiDf~~K~sk~~kD-lSRMR~iLL~LK~~p~ 107 (110)
.++++.|+........ ...|..||+.+. + ++.++ ..|....|..+.+.+.
T Consensus 13 ~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~--~---Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 13 VEEQKKLEQLLIKYPPEEVESRRWQKIADELG--N---RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp HHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS--S---SCHHHHHHHHHHHHGGGSTTCS
T ss_pred HHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC--C---CCHHHHHHHHHHHHHHHHhcCC
Confidence 3455566664433322 278999999983 3 43444 5688788888776654
No 5
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=64.20 E-value=3.5 Score=25.51 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=24.2
Q ss_pred HHHHHHHHhhccCCCCChhHHHHhhhcCCCCCCCCcchHHHHHHHH
Q psy5569 54 NAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSII 99 (110)
Q Consensus 54 ~~Ee~fl~~~~~~~~gt~WERIakLiDf~~K~sk~~kDlSRMR~iL 99 (110)
++++.+++..... +...|..|++.+.|.+...+.+ ..|.|.++
T Consensus 17 eED~~L~~~V~~~-G~~~W~~Ia~~~~~~~Rt~~qc--r~Rw~nl~ 59 (64)
T 3sjm_A 17 EESEWVKAGVQKY-GEGNWAAISKNYPFVNRTAVMI--KDRWRTMK 59 (64)
T ss_dssp HHHHHHHHHHHHH-CTTCHHHHHHHSCCSSCCHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHHcc-CCCchHHHHhhcCCCCCCHHHH--HHHHHHHh
Confidence 4444555433222 2246999999987765433333 34666654
No 6
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=63.57 E-value=12 Score=23.71 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=26.8
Q ss_pred cHHHHHHHHHhhccCCC--CChhHHHHhhhcCCCCCCCCcchHHHHHHHHHH
Q psy5569 52 FLNAEKQFVAEVDDIEP--GTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQ 101 (110)
Q Consensus 52 NR~~Ee~fl~~~~~~~~--gt~WERIakLiDf~~K~sk~~kDlSRMR~iLL~ 101 (110)
++++.+.|......... ..-|+.||+.+ + |+.+++-+.=..|..
T Consensus 12 T~eE~k~fe~al~~~p~~t~~RW~~IA~~l---g---Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 12 TEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---G---RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---T---SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---C---CCHHHHHHHHHHHHH
Confidence 45666666665444432 35799999997 2 556776554444443
No 7
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=61.59 E-value=17 Score=24.21 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=26.6
Q ss_pred cHHHHHHHHHhhccC--CCCChhHHHHhhhcCCCCCCCCcch-HHHHHHHH
Q psy5569 52 FLNAEKQFVAEVDDI--EPGTEWERIAKLCDFNPKVGRTNKD-VSRMRSII 99 (110)
Q Consensus 52 NR~~Ee~fl~~~~~~--~~gt~WERIakLiDf~~K~sk~~kD-lSRMR~iL 99 (110)
++++++.|+...... ..+.-|+.||+.|. + ++.++ ..|...++
T Consensus 12 T~eEd~~L~~al~~~~~~~~~rW~~IA~~vp--G---RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 12 SAKENKAFERALAVYDKDTPDRWANVARAVE--G---RTPEEVKKHYEILV 57 (93)
T ss_dssp CHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--T---CCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHcC--C---CCHHHHHHHHHHHH
Confidence 356666776644333 23678999999994 2 44455 45666654
No 8
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=58.68 E-value=23 Score=21.75 Aligned_cols=48 Identities=23% Similarity=0.330 Sum_probs=30.1
Q ss_pred HHHHHHHHHhhccCCCCChhHHHHhhhcCCCCCCCCcch-HHHHHHHHHHhhcCCC
Q psy5569 53 LNAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKD-VSRMRSIILQLKQTPL 107 (110)
Q Consensus 53 R~~Ee~fl~~~~~~~~gt~WERIakLiDf~~K~sk~~kD-lSRMR~iLL~LK~~p~ 107 (110)
.++++.|+..... -|+.|..||+++. + ++... ..|...+|..+.+.++
T Consensus 14 ~eEd~~l~~~~~~--~G~~W~~Ia~~~~--~---Rt~~q~k~r~~~~l~~~~~~g~ 62 (72)
T 2cu7_A 14 IEEKELFEQGLAK--FGRRWTKISKLIG--S---RTVLQVKSYARQYFKNKVKCGL 62 (72)
T ss_dssp HHHHHHHHHHHHH--TCSCHHHHHHHHS--S---SCHHHHHHHHHHHHHHHSCSCT
T ss_pred HHHHHHHHHHHHH--HCcCHHHHHHHcC--C---CCHHHHHHHHHHHHHHHHhcCC
Confidence 3555666664332 3559999999883 3 32333 5677788887766554
No 9
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=52.86 E-value=4.5 Score=23.57 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=17.4
Q ss_pred ChhHHHHhhhcCCCCCCCCcchHHHHHHHH
Q psy5569 70 TEWERIAKLCDFNPKVGRTNKDVSRMRSII 99 (110)
Q Consensus 70 t~WERIakLiDf~~K~sk~~kDlSRMR~iL 99 (110)
..|..|++.+.|++.+.+.+ ..|.+.+|
T Consensus 23 ~~W~~Ia~~~~~~~Rt~~qc--r~Rw~~~~ 50 (53)
T 1w0t_A 23 GNWSKILLHYKFNNRTSVML--KDRWRTMK 50 (53)
T ss_dssp TCHHHHHHHSCCSSCCHHHH--HHHHHHHH
T ss_pred CCHHHHHHHcCCCCCCHHHH--HHHHHHHH
Confidence 58999999997654332222 34555544
No 10
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=49.49 E-value=19 Score=22.87 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=18.8
Q ss_pred cHHHHHHHHHhhccCC--CCChhHHHHhhhc
Q psy5569 52 FLNAEKQFVAEVDDIE--PGTEWERIAKLCD 80 (110)
Q Consensus 52 NR~~Ee~fl~~~~~~~--~gt~WERIakLiD 80 (110)
+.++++.|+....... .+.-|..||++|.
T Consensus 22 T~eEd~~L~~al~~~g~~~~~rW~~IA~~vp 52 (73)
T 2cqr_A 22 TQNQQKLLELALQQYPRGSSDCWDKIARCVP 52 (73)
T ss_dssp CHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS
T ss_pred CHHHHHHHHHHHHHcCCCCCchHHHHHHHcC
Confidence 3556666665433332 3578999999994
No 11
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=43.21 E-value=7.8 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.293 Sum_probs=24.2
Q ss_pred HHHHHHHHhhccCCCCChhHHHHhhhcCCCCCCCCcchHHHHHHHHH
Q psy5569 54 NAEKQFVAEVDDIEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIIL 100 (110)
Q Consensus 54 ~~Ee~fl~~~~~~~~gt~WERIakLiDf~~K~sk~~kDlSRMR~iLL 100 (110)
++++.++...... +...|..|++.+.|++.+.+.+ ..|.+.+|-
T Consensus 16 eED~~L~~~v~~~-G~~~W~~Ia~~~~~~~Rt~~qc--r~Rw~~~l~ 59 (69)
T 1ity_A 16 EEDKNLRSGVRKY-GEGNWSKILLHYKFNNRTSVML--KDRWRTMKK 59 (69)
T ss_dssp HHHHHHHHHHHHH-CSSCHHHHHHHSCCSSCCHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCcHHHHHHHcCcCCCCHHHH--HHHHHHHcC
Confidence 3444444433222 2358999999997754332222 346666653
No 12
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=42.88 E-value=21 Score=22.36 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=21.8
Q ss_pred HHHHHHHHhh--ccCCCCChhHHHHhhhc
Q psy5569 54 NAEKQFVAEV--DDIEPGTEWERIAKLCD 80 (110)
Q Consensus 54 ~~Ee~fl~~~--~~~~~gt~WERIakLiD 80 (110)
++|+.|.+.. ....+.-+||++-+.|.
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i~ 32 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISELG 32 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHhc
Confidence 6789999943 34578999999999983
No 13
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=40.82 E-value=13 Score=19.31 Aligned_cols=12 Identities=17% Similarity=0.719 Sum_probs=10.2
Q ss_pred HHHHHHhhcCCC.....
Q psy5569 96 RSIILQLKQTPL..... 107 (110)
Q Consensus 96 R~iLL~LK~~p~..... 107 (110)
|..||++++.|+
T Consensus 10 R~fLl~~rnSP~..... 21 (21)
T 3hxi_C 10 RKFLMECRNSPVxxxxx 26 (26)
T ss_pred HHHHHHhccCCC.....
Confidence 678999999985
No 14
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.99 E-value=23 Score=22.81 Aligned_cols=29 Identities=7% Similarity=0.125 Sum_probs=18.0
Q ss_pred cHHHHHHHHHhhccC--CCCChhHHHHhhhc
Q psy5569 52 FLNAEKQFVAEVDDI--EPGTEWERIAKLCD 80 (110)
Q Consensus 52 NR~~Ee~fl~~~~~~--~~gt~WERIakLiD 80 (110)
++++++.|....... ..-.-|++||..|.
T Consensus 12 T~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~ 42 (73)
T 1wgx_A 12 NEKELQKLHCAFASLPKHKPGFWSEVAAAVG 42 (73)
T ss_dssp CHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCCCccHHHHHHHHcC
Confidence 455666665543222 23468999999984
No 15
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=32.20 E-value=18 Score=20.44 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=11.5
Q ss_pred CcCCCCCCCCCChH
Q psy5569 2 DAFGDNFDDNVDPA 15 (110)
Q Consensus 2 ~~~~d~f~~~~dpa 15 (110)
|.|||.|..++||-
T Consensus 12 D~yGDSY~rd~t~~ 25 (37)
T 1ik9_C 12 DCYGDSYFIDTDLN 25 (37)
T ss_dssp CTTSCBSSSCCCHH
T ss_pred ccccccccCcCCHH
Confidence 67999998888864
No 16
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=28.12 E-value=38 Score=21.57 Aligned_cols=27 Identities=4% Similarity=0.243 Sum_probs=18.9
Q ss_pred cHHHHHHHHHhhccCCCCChhHHHHhhhc
Q psy5569 52 FLNAEKQFVAEVDDIEPGTEWERIAKLCD 80 (110)
Q Consensus 52 NR~~Ee~fl~~~~~~~~gt~WERIakLiD 80 (110)
+.++++.|++..... |.-|..||+.|.
T Consensus 22 T~eEd~~Ll~~v~~~--G~~W~~IA~~v~ 48 (79)
T 2yus_A 22 TEQETLLLLEALEMY--KDDWNKVSEHVG 48 (79)
T ss_dssp CHHHHHHHHHHHHHS--SSCHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHh--CCCHHHHHHHcC
Confidence 446677777754432 378999999994
No 17
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=25.97 E-value=53 Score=19.35 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhccCCCCChhHHHHhhhc
Q psy5569 53 LNAEKQFVAEVDDIEPGTEWERIAKLCD 80 (110)
Q Consensus 53 R~~Ee~fl~~~~~~~~gt~WERIakLiD 80 (110)
.++++.++...... +-..|..||+.+.
T Consensus 13 ~eED~~L~~~v~~~-G~~~W~~Ia~~~~ 39 (60)
T 1x41_A 13 AQEEMALLEAVMDC-GFGNWQDVANQMC 39 (60)
T ss_dssp HHHHHHHHHHHHHT-CTTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH-CcCcHHHHHHHhC
Confidence 35555666543322 2257999999993
No 18
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=25.52 E-value=60 Score=20.48 Aligned_cols=32 Identities=19% Similarity=0.356 Sum_probs=23.8
Q ss_pred cHHHHHHHHHhhc--cCCCCChhHHHHhhhcCCC
Q psy5569 52 FLNAEKQFVAEVD--DIEPGTEWERIAKLCDFNP 83 (110)
Q Consensus 52 NR~~Ee~fl~~~~--~~~~gt~WERIakLiDf~~ 83 (110)
--++++.|..... .+.+..+|+.+.+.|-..|
T Consensus 14 ~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~Dp 47 (71)
T 1uzc_A 14 KEEAKQAFKELLKEKRVPSNASWEQAMKMIINDP 47 (71)
T ss_dssp HHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSG
T ss_pred HHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCc
Confidence 3456778888543 4679999999999886554
No 19
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=22.84 E-value=34 Score=22.47 Aligned_cols=38 Identities=16% Similarity=0.367 Sum_probs=21.6
Q ss_pred cHHHHHHHHHhhccC--CCCChhHHHHhhhcCCCCCCCCcchHHH
Q psy5569 52 FLNAEKQFVAEVDDI--EPGTEWERIAKLCDFNPKVGRTNKDVSR 94 (110)
Q Consensus 52 NR~~Ee~fl~~~~~~--~~gt~WERIakLiDf~~K~sk~~kDlSR 94 (110)
++++.+.|....... ....-|++||..|. + |+..++-+
T Consensus 24 T~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp--G---KT~eEVk~ 63 (74)
T 4eef_G 24 KFSENIAFEIALSFTNKDTPDRWKKVAQYVK--G---RTPEEVKK 63 (74)
T ss_dssp CTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC--S---SCHHHHHG
T ss_pred CHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC--C---CCHHHHHH
Confidence 344555555543222 23578999999985 2 44455544
No 20
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=21.57 E-value=86 Score=20.31 Aligned_cols=30 Identities=23% Similarity=0.353 Sum_probs=23.0
Q ss_pred HHHHHHHHhhc--cCCCCChhHHHHhhhcCCC
Q psy5569 54 NAEKQFVAEVD--DIEPGTEWERIAKLCDFNP 83 (110)
Q Consensus 54 ~~Ee~fl~~~~--~~~~gt~WERIakLiDf~~ 83 (110)
++++.|..... .+.+..+|+.+...|-..|
T Consensus 18 ea~~~Fk~LL~e~~V~p~~tWe~~~~~i~~Dp 49 (82)
T 2dod_A 18 ARMKQFKDMLLERGVSAFSTWEKELHKIVFDP 49 (82)
T ss_dssp HHHHHHHHHHHHTTCCSSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCcCCCCCHHHHHHHHccCC
Confidence 45778888543 4679999999999887665
No 21
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=20.30 E-value=33 Score=22.88 Aligned_cols=36 Identities=22% Similarity=0.381 Sum_probs=28.0
Q ss_pred CCCCChhHHHHhhhcCCCCCCCCcchHHHHHHHHHHhhcCCCC
Q psy5569 66 IEPGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLKQTPLK 108 (110)
Q Consensus 66 ~~~gt~WERIakLiDf~~K~sk~~kDlSRMR~iLL~LK~~p~~ 108 (110)
..+|..| ++++|++.-. -|.|.++.+|-+|.+.+++
T Consensus 31 ~~~g~~~-s~~eLa~~l~------l~~stLsR~l~rLe~~GLV 66 (96)
T 2obp_A 31 ENGATPW-SLPKIAKRAQ------LPMSVLRRVLTQLQAAGLA 66 (96)
T ss_dssp STTCCCC-BHHHHHHHHT------CCHHHHHHHHHHHHHTTSE
T ss_pred hCCCCCc-CHHHHHHHhC------CchhhHHHHHHHHHHCCCE
Confidence 4466778 8888887533 5688999999999988875
Done!