RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5569
         (110 letters)



>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain. 
          Length = 225

 Score = 71.7 bits (176), Expect = 1e-16
 Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 4/59 (6%)

Query: 53  LNAEKQFVAEVDDIE-PGTEWERIAKLCDFNPKVGRTNKDVSRMRSIILQLK---QTPL 107
               +QF+AE DD   PGTEWER+AKLCDFNPK  +  +D SR R I+L LK   Q P 
Sbjct: 166 RKEAEQFLAERDDFSSPGTEWERVAKLCDFNPKGSKQGRDKSRFREILLSLKGDEQAPG 224



 Score = 30.1 bits (68), Expect = 0.17
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 5  GDNFDDNVDPAAEFLAREQNQLAG 28
          G     + DPAA+FLAREQ  L  
Sbjct: 16 GVADVADEDPAADFLAREQELLGD 39


>gnl|CDD|183956 PRK13293, PRK13293, F420-0--gamma-glutamyl ligase; Reviewed.
          Length = 245

 Score = 26.8 bits (60), Expect = 2.4
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 55 AEKQFVAEVDDIEPGTEWERIAKLCDFNPKV 85
          AE + V ++DDI P      IAK    +P+ 
Sbjct: 46 AEGR-VIDLDDITPSERAIEIAKKLGKDPRF 75


>gnl|CDD|223022 PHA03248, PHA03248, DNA packaging tegument protein UL25;
           Provisional.
          Length = 583

 Score = 26.9 bits (60), Expect = 2.7
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 2   DAFGDNFDDNVDPAA-EFLAREQNQLAGLEDELQPAVAVNATINGMTNSLLFL 53
           D     + D V+ AA  FL R QN L  +ED+      + ATIN +T +LL L
Sbjct: 344 DPDQVAYVDEVNRAAAAFLGRAQN-LFLMEDQTL----LRATINTIT-ALLLL 390


>gnl|CDD|215030 PLN00019, PLN00019, photosystem I reaction center subunit III;
           Provisional.
          Length = 223

 Score = 26.3 bits (58), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 7/35 (20%)

Query: 16  AEFLAREQNQLAGLEDELQ-------PAVAVNATI 43
             F  RE+ ++  LE  L+       PA+A+NATI
Sbjct: 76  KAFAKREKQEIKKLESRLKLYAPDSAPALALNATI 110


>gnl|CDD|224805 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
          Length = 307

 Score = 25.7 bits (57), Expect = 6.0
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 8   FDDNVDPAAEFLAREQNQLAGLEDELQPAV--------AVNATINGMTNSL 50
                D   + LA    + AGLE EL P +         VNA IN +T  L
Sbjct: 149 LRGGRDELVKALAELFKE-AGLEVELHPDILAAIWRKLVVNAAINPLTALL 198


>gnl|CDD|184363 PRK13879, PRK13879, conjugal transfer protein TrbJ; Provisional.
          Length = 253

 Score = 25.4 bits (56), Expect = 6.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 8/50 (16%)

Query: 23  QNQLAGLEDELQPAVA--------VNATINGMTNSLLFLNAEKQFVAEVD 64
           Q QL   E+ LQ  +A          +TING+ N++  LN  K  +  +D
Sbjct: 58  QTQLQQYENMLQNTMAPAAYIWDQAQSTINGLMNAVDTLNYYKNQLGSLD 107


>gnl|CDD|182860 PRK10949, PRK10949, protease 4; Provisional.
          Length = 618

 Score = 25.4 bits (56), Expect = 8.1
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 2   DAFGDNFDDNVDPAAEFLAREQNQLAGLEDE 32
           D+ GD FDD V  AAE    +Q  L    DE
Sbjct: 524 DSLGD-FDDAVAKAAELAKLKQWHLNWYVDE 553


>gnl|CDD|236185 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
           Reviewed.
          Length = 583

 Score = 25.4 bits (56), Expect = 8.3
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 7/58 (12%)

Query: 54  NAEKQFVAEVDDIEPGTEWERIAKL-------CDFNPKVGRTNKDVSRMRSIILQLKQ 104
           N E   V  V+D+      ER+A +        D N  V RT + + +  + I  LK+
Sbjct: 429 NPEAMVVEWVEDLLSEHGNERVADIRGELQQSMDNNASVFRTEETLKQALTDIHALKE 486


>gnl|CDD|184025 PRK13394, PRK13394, 3-hydroxybutyrate dehydrogenase; Provisional.
          Length = 262

 Score = 25.2 bits (55), Expect = 8.6
 Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 9   DDNVDPAAEFLAREQNQLAGLEDELQPAVAVNATINGMTNSL-----LFLNAEKQFVAEV 63
            D  +  A+ + +   +  G+  ++    AVNA I+ +         L  NA  Q V  +
Sbjct: 41  QDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSVDILVSNAGIQIVNPI 100

Query: 64  DDIEPGTEWERI 75
           ++     +W+++
Sbjct: 101 ENY-SFADWKKM 111


>gnl|CDD|237585 PRK14015, pepN, aminopeptidase N; Provisional.
          Length = 875

 Score = 25.1 bits (56), Expect = 9.0
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 3/28 (10%)

Query: 10  DNVDPAAEFLARE--QNQLA-GLEDELQ 34
           + +DP A   ARE  +  LA  L+DEL 
Sbjct: 633 EVIDPDAIHAAREALRRALATALKDELL 660


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.315    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0673    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,691,623
Number of extensions: 483799
Number of successful extensions: 419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 418
Number of HSP's successfully gapped: 23
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.3 bits)