RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5569
         (110 letters)



>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit
           (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId:
           10116]}
          Length = 277

 Score = 23.9 bits (51), Expect = 4.8
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 32  ELQPAVAVNATINGMTNSLLFLNA----EKQFVAEVDDIEPGTEWERIAKLCDFNPKVGR 87
            +   V + + ++GM      +N     EKQ     D+     +       C F+  V  
Sbjct: 37  HVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRL 96

Query: 88  TNKDVSRMRSIILQLKQTPL 107
           +  D  R  S I    +  L
Sbjct: 97  SKFDSERSISFIPPDGEFEL 116


>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
           (Solanum tuberosum) [TaxId: 4113]}
          Length = 364

 Score = 23.8 bits (50), Expect = 7.3
 Identities = 5/29 (17%), Positives = 16/29 (55%)

Query: 76  AKLCDFNPKVGRTNKDVSRMRSIILQLKQ 104
            +    +P    ++K+V+R++ ++   K+
Sbjct: 319 VRSIVNDPSKNVSSKEVARLKKLVSYWKE 347


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 395,561
Number of extensions: 15845
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 4
Length of query: 110
Length of database: 2,407,596
Length adjustment: 69
Effective length of query: 41
Effective length of database: 1,460,226
Effective search space: 59869266
Effective search space used: 59869266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)