BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5570
(875 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UGJ|A Chain A, Formyl Glycinamide Ribonucletide Amidotransferase From
Salmonella Typhimurum: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 104/206 (50%), Gaps = 27/206 (13%)
Query: 573 KISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQ-- 630
+ + N++ V +E TL + W T++++++L+ N +CAD+E+ + P +
Sbjct: 971 RFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLS 1030
Query: 631 -PVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSA 689
+ +DI + T PK +AVLRE+G+N EM+A
Sbjct: 1031 FDINEDIAAPYI---ATGARPK---------------------VAVLREQGVNSHVEMAA 1066
Query: 690 MAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749
GF+ D+ + DLL +I L F LV GGFSY D LG+ +GWA S+L N ++
Sbjct: 1067 AFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRD 1126
Query: 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775
+ F R T + GVCNGCQ+M+ L
Sbjct: 1127 EFETFFHRPQTLALGVCNGCQMMSNL 1152
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 72/132 (54%), Gaps = 6/132 (4%)
Query: 70 NISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHND 129
+I++ A+ V+ L +V K FL DR VTG++A+ Q VGP P+AD AV +
Sbjct: 638 DITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLDS 697
Query: 130 LRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFS 189
G A SIGE+ L+D AR+AV EALTN+ +I D+K + S+ ++ +
Sbjct: 698 YYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSA------NWMAA 751
Query: 190 GRFAFKNHGIYD 201
++ G+YD
Sbjct: 752 AGHPGEDAGLYD 763
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 32/135 (23%)
Query: 452 QCAESFYDRMTECVYSSPLTS----FNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGL 507
Q A +DRM E V+SS LT F H +P P VD++G+G+ AL + N +LG
Sbjct: 134 QVAAELHDRMMETVFSS-LTDAEKLFIHH-QPAPVSSVDLLGEGRQALIDANLRLG---- 187
Query: 508 LFIYFIVQRTKLCIVQRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHS 567
LA E +++Y + F KL RNP +E + AQ+NSEH
Sbjct: 188 ---------------------LALAEDEIDYLQEAF-TKLGRNPNDIELYMFAQANSEHC 225
Query: 568 RHWFFKISVAVNNEP 582
RH F ++ +P
Sbjct: 226 RHKIFNADWIIDGKP 240
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 171 LKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNG 230
L+ + S I + H GR ++ L+ + +RYVD+ K+TE YP NPNG
Sbjct: 1190 LQGMVGSQMPIAVSHGE--GRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNG 1247
Query: 231 SP 232
SP
Sbjct: 1248 SP 1249
>pdb|1T3T|A Chain A, Structure Of Formylglycinamide Synthetase
pdb|3UJN|A Chain A, Formyl Glycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium : Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
pdb|3UMM|A Chain A, Formylglycinamide Ribonucleotide Amidotransferase From
Salmonella Typhimurium: Role Of The Atp Complexation And
Glutaminase Domain In Catalytic Coupling
Length = 1303
Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/203 (32%), Positives = 102/203 (50%), Gaps = 27/203 (13%)
Query: 576 VAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQ---PV 632
+ N++ V +E TL + W T++++++L+ N +CAD+E+ + P + +
Sbjct: 974 ITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLSFDI 1033
Query: 633 RDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSAMAQ 692
+DI + T PK +AVLRE+G+N EM+A
Sbjct: 1034 NEDIAAPYI---ATGARPK---------------------VAVLREQGVNSHVEMAAAFH 1069
Query: 693 VCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752
GF+ D+ + DLL +I L F LV GGFSY D LG+ +GWA S+L N ++ +
Sbjct: 1070 RAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFE 1129
Query: 753 KFIARSDTFSFGVCNGCQLMNLL 775
F R T + GV NGCQ+M+ L
Sbjct: 1130 TFFHRPQTLALGVXNGCQMMSNL 1152
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 60/103 (58%)
Query: 70 NISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHND 129
+I++ A+ V+ L +V K FL DR VTG++A+ Q VGP P+AD AV +
Sbjct: 638 DITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLDS 697
Query: 130 LRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 172
G A SIGE+ L+D AR+AV EALTN+ +I D+K
Sbjct: 698 YYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIK 740
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 32/135 (23%)
Query: 452 QCAESFYDRMTECVYSSPLTS----FNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGL 507
Q A +DRM E V+SS LT F H +P P VD++G+G+ AL + N +LG
Sbjct: 134 QVAAELHDRMMETVFSS-LTDAEKLFIHH-QPAPVSSVDLLGEGRQALIDANLRLG---- 187
Query: 508 LFIYFIVQRTKLCIVQRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHS 567
LA E +++Y + F KL RNP +E + AQ+NSEH
Sbjct: 188 ---------------------LALAEDEIDYLQEAF-TKLGRNPNDIELYMFAQANSEHC 225
Query: 568 RHWFFKISVAVNNEP 582
RH F ++ +P
Sbjct: 226 RHKIFNADWIIDGKP 240
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 171 LKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNG 230
L+ + S I + H GR ++ L+ + +RYVD+ K+TE YP NPNG
Sbjct: 1190 LQGMVGSQMPIAVSHGE--GRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNG 1247
Query: 231 SP 232
SP
Sbjct: 1248 SP 1249
>pdb|3IHI|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase
pdb|3IHI|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase
pdb|4E5O|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|E Chain E, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4E5O|F Chain F, Crystal Structure Of Mouse Thymidylate Synthase In Complex
With Dump
pdb|4EB4|A Chain A, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|B Chain B, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|C Chain C, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
pdb|4EB4|D Chain D, Crystal Structure Of Mouse Thymidylate Synthase In Ternary
Complex With Dump And Tomudex
Length = 307
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 248 YGHGAVQKGMPFKDYHGK-TGRVFNVTQHAVGVIVNKRVRTRII-----PKSAEKISSSV 301
YG G +KD +G+ + Q + I RII PK ++
Sbjct: 129 YGFQWRHFGAEYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPP 188
Query: 302 SRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C QFYV +G+LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGLQ
Sbjct: 189 CHALC--QFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQ 238
>pdb|1RTS|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|1RTS|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|A Chain A, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|B Chain B, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|C Chain C, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
pdb|2TSR|D Chain D, Thymidylate Synthase From Rat In Ternary Complex With Dump
And Tomudex
Length = 307
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 64/112 (57%), Gaps = 8/112 (7%)
Query: 248 YGHGAVQKGMPFKDYHGK-TGRVFNVTQHAVGVIVNKRVRTRII-----PKSAEKISSSV 301
YG G +KD +G+ + Q + I RII PK ++
Sbjct: 129 YGFQWRHFGADYKDMDSDYSGQGVDQLQKVIDTIKTNPDDRRIIMCAWNPKDLPLMALPP 188
Query: 302 SRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C QFYV +G+LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGLQ
Sbjct: 189 CHALC--QFYVVNGELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLQ 238
>pdb|3EGY|X Chain X, Crystal Structure Of Human Thymidyalte Synthase A191k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALXQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1HW3|A Chain A, Structure Of Human Thymidylate Synthase Suggests
Advantages Of Chemotherapy With Noncompetitive
Inhibitors
pdb|1YPV|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|2ONB|A Chain A, Human Thymidylate Synthase At Low Salt Conditions With
Pdpa Bound
Length = 313
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALXQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3N5G|A Chain A, Crystal Structure Of Histidine-Tagged Human Thymidylate
Synthase
Length = 325
Score = 86.7 bits (213), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 ALXQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|3EBU|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3N5E|A Chain A, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|4E28|A Chain A, Structure Of Human Thymidylate Synthase In Inactive
Conformation With A Novel Non-Peptidic Inhibitor
Length = 325
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|3N5E|B Chain B, Crystal Structure Of Human Thymidylate Synthase Bound To A
Peptide Inhibitor
Length = 325
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 209 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 256
>pdb|3EHI|X Chain X, Crystal Structure Of Human Thymidyalte Synthase M190k With
Loop 181- 197 Stabilized In The Inactive Conformation
Length = 313
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALXQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3EAW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALXQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1HW4|A Chain A, Structure Of Thymidylate Synthase Suggests Advantages Of
Chemotherapy With Noncompetitive Inhibitors
Length = 355
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 239 ALXQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 286
>pdb|3GH2|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|2RD8|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
Length = 313
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1JU6|A Chain A, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|B Chain B, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|C Chain C, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JU6|D Chain D, Human Thymidylate Synthase Complex With Dump And Ly231514,
A Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|A Chain A, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|B Chain B, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|C Chain C, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
pdb|1JUJ|D Chain D, Human Thymidylate Synthase Bound To Dump And Ly231514, A
Pyrrolo(2,3-D)pyrimidine-Based Antifolate
Length = 313
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|2RD8|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|A Chain A, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|B Chain B, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|C Chain C, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|D Chain D, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|E Chain E, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|2RDA|F Chain F, Human Thymidylate Synthase Stabilized In Active
Conformation By R163k Mutation: Asymmetry And Reactivity
Of Cys195
pdb|3H9K|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3H9K|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|A Chain A, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|B Chain B, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|C Chain C, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|D Chain D, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3HB8|E Chain E, Structures Of Thymidylate Synthase R163k With Substrates
And Inhibitors Show Subunit Asymmetry
pdb|3OB7|A Chain A, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|B Chain B, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|C Chain C, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|D Chain D, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
pdb|3OB7|E Chain E, Human Thymidylate Synthase R163k With Cys 195 Covalently
Modified By Glutathione
Length = 313
Score = 85.9 bits (211), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3EF9|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GH0|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|4GYH|A Chain A, Structure Of Human Thymidylate Synthase At High Salt
Conditions
pdb|4H1I|A Chain A, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|B Chain B, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|C Chain C, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
pdb|4H1I|D Chain D, Structure Of Human Thymidylate Synthase At Low Salt
Conditions
Length = 318
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3EDW|X Chain X, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3EJL|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|3GG5|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|B Chain B, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|C Chain C, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
pdb|3GG5|D Chain D, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 313
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 197 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 244
>pdb|1HVY|A Chain A, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|B Chain B, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|C Chain C, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
pdb|1HVY|D Chain D, Human Thymidylate Synthase Complexed With Dump And
Raltitrexed, An Antifolate Drug, Is In The Closed
Conformation
Length = 288
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 172 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 219
>pdb|1HZW|A Chain A, Crystal Structure Of Human Thymidylate Synthase
pdb|1HZW|B Chain B, Crystal Structure Of Human Thymidylate Synthase
pdb|1I00|A Chain A, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
pdb|1I00|B Chain B, Crystal Structure Of Human Thymidylate Synthase, Ternary
Complex With Dump And Tomudex
Length = 290
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 174 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 221
>pdb|3ED7|A Chain A, Replacement Of Val3 In Human Thymidylate Synthase Affects
Its Kinetic Properties And Intracellular Stability
Length = 295
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 179 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 226
>pdb|3UWL|A Chain A, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|C Chain C, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 242 GRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVI-VNKRVRTRIIPKSAEKISSS 300
+ KYG G ++ + K G + + + +I N R I+ + S
Sbjct: 132 AEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLIVSAWNPEDVPS 191
Query: 301 VSRKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
++ C + QFYV +GKLSCQLYQRSAD+ LGVPFNIASY+LLT++IAH TGL+
Sbjct: 192 MALPPCHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLE 246
>pdb|3IX6|A Chain A, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
pdb|3IX6|B Chain B, Crystal Structure Of Thymidylate Synthase Thya From
Brucella Melitensis
Length = 360
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 44/48 (91%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
CL QFYVA+G+LSCQLYQRSAD+ LGVPFNIASY+LLT MIA VTGL+
Sbjct: 244 CLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLK 291
>pdb|3UWL|B Chain B, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
pdb|3UWL|D Chain D, Crystal Structure Of Enteroccocus Faecalis Thymidylate
Synthase (efts) In Complex With 5-formyl
Tetrahydrofolate
Length = 315
Score = 83.6 bits (205), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 242 GRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS--AEKISS 299
+ KYG G ++ + K G + + + +I R+I + E + S
Sbjct: 132 AEFAEKYGELGNIYGAQWRHWETKDGSFIDQLANVIEMIKTNPDSRRLIVSAWNPEDVPS 191
Query: 300 -SVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
++ + QFYV +GKLSCQLYQRSAD+ LGVPFNIASY+LLT++IAH TGL+
Sbjct: 192 MALPPXHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLE 246
>pdb|3KGB|A Chain A, Crystal Structure Of Thymidylate Synthase 12 FROM
ENCEPHALITOZOON Cuniculi At 2.2 A Resolution
Length = 294
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 41/48 (85%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QF V DGKLSC +YQRS DMGLGVPFNIASYSLLT ++AH+TGLQ
Sbjct: 176 VLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQ 223
>pdb|1BO8|A Chain A, Thymidylate Synthase R178t Mutant
Length = 316
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I TR+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSTRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1BP6|A Chain A, Thymidylate Synthase R23i, R179t Double Mutant
Length = 316
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 236 ERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVI-VNKRVRTRIIPKSA 294
+R + KYG + G ++ +H G + + I + RT I+
Sbjct: 127 DRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRTLIVSAWN 186
Query: 295 EKISSSVSRKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 352
+ +++ C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL
Sbjct: 187 PEDVPTMALPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGL 246
Query: 353 Q 353
+
Sbjct: 247 E 247
>pdb|1BO7|A Chain A, Thymidylate Synthase R179t Mutant
Length = 316
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 65/113 (57%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVI-VNKRVRTRIIPKSAEKISSSVS 302
+ KYG + G ++ +H G + + I + RT I+ + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRTLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|4DQ1|A Chain A, Thymidylate Synthase From Staphylococcus Aureus.
pdb|4DQ1|B Chain B, Thymidylate Synthase From Staphylococcus Aureus
Length = 321
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 3/122 (2%)
Query: 235 RERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIV-NKRVRTRIIPKS 293
++R + + ++G G ++D+ K G F+ + + I N R I+
Sbjct: 132 KQRILEDDTFAKQFGDLGNVYGKQWRDWVDKDGNHFDQLKTVIEQIKHNPDSRRHIVSAW 191
Query: 294 AEKISSSVSRKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTG 351
+++ C + QFYV DGKLSCQLYQRSAD+ LGVPFNIASY+LLT++IA G
Sbjct: 192 NPTEIDTMALPPCHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAKECG 251
Query: 352 LQ 353
L+
Sbjct: 252 LE 253
>pdb|3INV|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3INV|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph, Dump And C-448 Antifolate
pdb|3IRM|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRM|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Cycloguanil
pdb|3IRN|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRN|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Cycloguanil
pdb|3IRO|A Chain A, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|B Chain B, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|C Chain C, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
pdb|3IRO|D Chain D, Trypanosoma Cruzi Dihydrofolate Reductase-Thymidylate
Synthase Complexed With Nadph And Q-8 Antifolate
Length = 521
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
LAQFYV++G+LSC LYQRS DMGLGVPFNIASY+LLT +IA TGL+
Sbjct: 406 LAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452
>pdb|2H2Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|2H2Q|B Chain B, Crystal Structure Of Trypanosoma Cruzi Dihydrofolate
Reductase- Thymidylate Synthase
pdb|3CL9|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Mtx
pdb|3CLB|A Chain A, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|B Chain B, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|C Chain C, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3CLB|D Chain D, Structure Of Bifunctional Tcdhfr-Ts In Complex With Tmq
pdb|3HBB|A Chain A, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|B Chain B, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|C Chain C, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3HBB|D Chain D, Structures Of Dihydrofolate Reductase-Thymidylate Synthase
Of Trypanosoma Cruzi In The Folate-Free State And In
Complex With Two Antifolate Drugs, Trimetrexate And
Methotrexate
pdb|3KJS|A Chain A, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|B Chain B, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|C Chain C, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
pdb|3KJS|D Chain D, Crystal Structure Of T. Cruzi Dhfr-Ts With 3 High Affinity
D Inhibitors: Dq1 Inhibitor Complex
Length = 521
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/47 (76%), Positives = 42/47 (89%)
Query: 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
LAQFYV++G+LSC LYQRS DMGLGVPFNIASY+LLT +IA TGL+
Sbjct: 406 LAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452
>pdb|1TSV|A Chain A, Thymidylate Synthase R179a Mutant
pdb|1TSW|A Chain A, Thymidylate Synthase R179a Mutant
Length = 316
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVI-VNKRVRTRIIPKSAEKISSSVS 302
+ KYG + G ++ +H G + + I + R I+ + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRALIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1TSX|A Chain A, Thymidylate Synthase R179e Mutant
Length = 316
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVI-VNKRVRTRIIPKSAEKISSSVS 302
+ KYG + G ++ +H G + + I + R I+ + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRELIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|2G8D|A Chain A, Lactobacillus Casei Thymidylate Synthase Y261w-dump
Complex
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|2G86|A Chain A, L. Casei Thymidylate Synthase Y261f In Complex With
Substrate, Dump
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1TSY|A Chain A, Thymidylate Synthase R179k Mutant
pdb|1TSZ|A Chain A, Thymidylate Synthase R179k Mutant
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVI-VNKRVRTRIIPKSAEKISSSVS 302
+ KYG + G ++ +H G + + I + R I+ + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRKLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|2G8A|A Chain A, Lactobacillus Casei Y261m In Complex With Substrate, Dump
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|2G89|A Chain A, L. Casei Thymidylate Synthase Y261a In Complex With
Substrate, Dump
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1LCA|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Cb3717
pdb|1LCB|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dtmp And H2folate
pdb|1LCE|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Ch2thf
pdb|1NJE|A Chain A, Thymidylate Synthase With 2'-Deoxycytidine
5'-Monophosphate (Dcmp)
pdb|1THY|A Chain A, Refined Structures Of Substrate-Bound And Phosphate-Bound
Thymidylate Synthase From Lactobacillus Casei
pdb|1TSL|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|1TSM|A Chain A, L. Casei Thymidylate Synthase With Species Specific
Inhibitor
pdb|2TDM|A Chain A, Structure Of Thymidylate Synthase
pdb|4TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|3BNZ|A Chain A, Crystal Structure Of Thymidylate Synthase Ternary Complex
With Dump And 8a Inhibitor
pdb|3BYX|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00 In Multiple
Binding Modes
pdb|3BZ0|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative C00
pdb|3C06|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 1
pdb|3C0A|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And The Phtalimidic Derivative 14c In Multiple
Binding Modes-Mode 2
pdb|3IJZ|A Chain A, Lactobacillus Casei Thymidylate Synthase Ternary Complex
With Dump And Pthalimidic Derivative 15c
pdb|3IK0|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 7c1
pdb|3IK1|A Chain A, Lactobacillus Casei Thymidylate Synthase In Ternary
Complex With Dump And The Phtalimidic Derivative 20c
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1VZA|A Chain A, Thymidylate Synthase E60d Mutant Binary Complex With 2'-
Deoxyuridine 5'-Monophosphate (Dump)
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1BP0|A Chain A, Thymidylate Synthase R23i Mutant
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1VZB|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Dump
pdb|1VZC|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Binary Complex
With Fdump
pdb|1VZD|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Fdump And Cb3717
pdb|1VZE|A Chain A, L. Casei Thymidylate Synthase Mutant E60q Ternary Complex
With Dump And Cb3717
Length = 316
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1TDA|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDB|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|1TDC|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
pdb|2TDD|A Chain A, Structures Of Thymidylate Synthase With A C-Terminal
Deletion: Role Of The C-Terminus In Alignment Of DUMP
AND CH2H4FOLATE
Length = 315
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|3UM5|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM5|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts-T994) COMPLEXED WITH Pyrimethamine, Nadph,
And Dump
pdb|3UM6|A Chain A, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
pdb|3UM6|B Chain B, Double Mutant (A16v+s108t) Plasmodium Falciparum Dhfr-Ts
(T994) Complexed With Cycloguanil, Nadph And Dump
Length = 608
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 39/47 (82%)
Query: 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 493 LCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>pdb|3QGT|A Chain A, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3QGT|B Chain B, Crystal Structure Of Wild-Type Pfdhfr-Ts Complexed With
Nadph, Dump And Pyrimethamine
pdb|3UM8|A Chain A, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|3UM8|B Chain B, Wild-Type Plasmodium Falciparum Dhfr-Ts Complexed With
Cycloguanil And Nadph
pdb|4DPD|A Chain A, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
pdb|4DPD|B Chain B, Wild Type Plasmodium Falciparum Dihydrofolate
Reductase-Thymidylate Synthase (Pfdhfr-Ts), Dhf Complex,
Nadp+, Dump
Length = 608
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 39/47 (82%)
Query: 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 493 LCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>pdb|3JSU|A Chain A, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3JSU|B Chain B, Quadruple Mutant(N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate
Synthase(Pfdhfr-Ts) Complexed With Qn254, Nadph, And
Dump
pdb|3QG2|A Chain A, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|3QG2|B Chain B, Plasmodium Falciparum Dhfr-Ts Qradruple Mutant
(N51i+c59r+s108n+i164l, V1S) PYRIMETHAMINE COMPLEX
pdb|4DP3|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DP3|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P218 And Nadph
pdb|4DPH|A Chain A, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
pdb|4DPH|B Chain B, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With P65 And Nadph
Length = 608
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 39/47 (82%)
Query: 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 493 LCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>pdb|1BPJ|A Chain A, Thymidylate Synthase R178t, R179t Double Mutant
Length = 316
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/113 (39%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I T +I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSTTLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>pdb|1NJC|A Chain A, Thymidylate Synthase, Mutation, N229d With
2'-Deoxycytidine 5'- Monophosphate (Dcmp)
pdb|1NJD|A Chain A, Thymidylate Synthase, Mutation, N229d With 2'-Deoxyuridine
5'- Monophosphate (Dump)
Length = 316
Score = 77.0 bits (188), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPF+IASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFDIASYALLTHLVAHECGLE 247
>pdb|1J3I|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3I|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With Wr99210,
Nadph, And Dump
pdb|1J3J|C Chain C, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3J|D Chain D, Double Mutant (C59r+s108n) Plasmodium Falciparum
Dihydrofolate Reductase-Thymidylate Synthase (Pfdhfr-Ts)
Complexed With Pyrimethamine, Nadph, And Dump
pdb|1J3K|C Chain C, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|1J3K|D Chain D, Quadruple Mutant (n51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-thymidylate Synthase
(pfdhfr-ts) Complexed With Wr99210, Nadph, And Dump
pdb|3DG8|C Chain C, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DG8|D Chain D, Quadruple Mutant (N51i+c59r+s108n+i164l) Plasmodium
Falciparum Dihydrofolate Reductase-Thymidylate Synthase
(Pfdhfr-Ts) Complexed With Rjf670, Nadph, And Dump
pdb|3DGA|C Chain C, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
pdb|3DGA|D Chain D, Wild-Type Plasmodium Falciparum Dihydrofolate Reductase-
Thymidylate Synthase (Pfdhfr-Ts) Complexed With
Rjf01302, Nadph, And Dump
Length = 328
Score = 77.0 bits (188), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 39/47 (82%)
Query: 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 213 LCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 259
>pdb|1JMI|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVW|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPF+IASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFSIASYALLTHLVAHECGLE 247
>pdb|3QJ7|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|C Chain C, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
pdb|3QJ7|D Chain D, Crystal Structure Of The Mycobacterium Tuberculosis
Thymidylate Synthase (Thya) Bound To Dump
Length = 264
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 256 GMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISS--SVSRKTCLA--QFY 311
G+ ++ + +G + A+ ++ RII SA + ++ C A QFY
Sbjct: 96 GVQWRSWPAPSGEHIDQISAALDLLRTDPDSRRII-VSAWNVGEIERMALPPCHAFFQFY 154
Query: 312 VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 352
VADG+LSCQLYQRSAD+ LGVPFNIASY+LLT+M+A GL
Sbjct: 155 VADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGL 195
>pdb|3I3R|A Chain A, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3I3R|B Chain B, X-Ray Structure Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis At 2.35a Resolution
pdb|3K2H|A Chain A, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3K2H|B Chain B, Co-Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE From Babesia Bovis With Dump, Pemetrexed And
Nadp
pdb|3KJR|A Chain A, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
pdb|3KJR|B Chain B, Crystal Structure Of Dihydrofolate ReductaseTHYMIDYLATE
SYNTHASE FROM Babesia Bovis Determined Using Slipchip
Based Microfluidics
Length = 511
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 352
C QFYV+D KLSC ++QRS D+GLGVPFNIASYS+LT M+A V GL
Sbjct: 395 CFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGL 441
>pdb|1JMG|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPF IASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFGIASYALLTHLVAHECGLE 247
>pdb|3NRR|A Chain A, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
pdb|3NRR|B Chain B, Co-Crystal Structure Of Dihydrofolate
Reductase-Thymidylate Synthase From Babesia Bovis With
Dump, Raltitrexed And Nadp
Length = 515
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 352
C QFYV+D KLSC ++QRS D+GLGVPFNIASYS+LT M+A V GL
Sbjct: 399 CFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGL 445
>pdb|1JMF|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
pdb|1TVU|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPF IASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFAIASYALLTHLVAHECGLE 247
>pdb|2ZKR|QQ Chain q, Structure Of A Mammalian Ribosomal 60s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 160
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/43 (72%), Positives = 38/43 (88%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIK 400
MTN+KG RRGTR +FSRPFR+HG +PL+ YM++YK GDIVDIK
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIK 43
Score = 75.5 bits (184), Expect = 1e-13, Method: Composition-based stats.
Identities = 43/84 (51%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK---- 292
R K G + G G VQKGMP K YHGKTGRV+NVTQHAVG+IVNK+V+ +I+ K
Sbjct: 32 RIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINV 91
Query: 293 SAEKISSSVSRKTCLAQFYVADGK 316
E I S SR + L + D K
Sbjct: 92 RIEHIKHSKSRDSFLKRVKENDQK 115
>pdb|1NJA|A Chain A, Thymidylate Synthase, Mutation, N229c With
2'-deoxycytidine 5'- Monophosphate (dcmp)
pdb|1NJB|A Chain A, Thymidylate Synthase
pdb|1TVV|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPF IASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFCIASYALLTHLVAHECGLE 247
>pdb|1JMH|A Chain A, Contributions Of Orientation And Hydrogen Bonding To
Catalysis In Asn- 229 Mutants Of Thymidylate Synthase
Length = 316
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 244 YLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAE-KISSSVS 302
+ KYG + G ++ +H G + + I R+I + + +++
Sbjct: 135 FAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRRLIVSAWNPEDVPTMA 194
Query: 303 RKTC--LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C L QFYV DGKLS QLYQRSAD+ LGVPF IASY+LLT+++AH GL+
Sbjct: 195 LPPCHTLYQFYVNDGKLSLQLYQRSADIFLGVPFIIASYALLTHLVAHECGLE 247
>pdb|3BGX|A Chain A, E. Coli Thymidylate Synthase C146s Mutant Complexed With
Dtmp And Mtf
pdb|1TYS|A Chain A, Water-Mediated Substrate(Slash)product Discrimination: The
Product Complex Of Thymidylate Synthase At 1.83
Angstroms
Length = 264
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 211 IRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVF 270
I Y+ +NN D + NG G +G + P D GR
Sbjct: 69 IAYLHENNVTIWDEWADENGDLGPV--------------YGKQWRAWPTPD-----GRHI 109
Query: 271 NVTQHAVGVIVNKRVRTRIIPKS---AEKISSSVSRKTCLAQFYVADGKLSCQLYQRSAD 327
+ + + N RII + E +++ QFYVADGKLSCQLYQRS D
Sbjct: 110 DQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPSHAFFQFYVADGKLSCQLYQRSCD 169
Query: 328 MGLGVPFNIASYSLLTYMIAHVTGLQ 353
+ LG+PFNIASY+LL +M+A L+
Sbjct: 170 VFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1QQQ|A Chain A, Crystal Structure Analysis Of Ser254 Mutant Of Escherichia
Coli Thymidylate Synthase
Length = 264
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 211 IRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVF 270
I Y+ +NN D + NG G +G + P D GR
Sbjct: 69 IAYLHENNVTIWDEWADENGDLGPV--------------YGKQWRAWPTPD-----GRHI 109
Query: 271 NVTQHAVGVIVNKRVRTRIIPKS---AEKISSSVSRKTCLAQFYVADGKLSCQLYQRSAD 327
+ + + N RII + E +++ QFYVADGKLSCQLYQRS D
Sbjct: 110 DQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRSXD 169
Query: 328 MGLGVPFNIASYSLLTYMIAHVTGLQ 353
+ LG+PFNIASY+LL +M+A L+
Sbjct: 170 VFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|2G8M|A Chain A, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8M|B Chain B, Escherichia Coli Thymidylate Synthase Y209w In Complex
With Substrate, Dump, And A Cofactor Analog, Cb3717
pdb|2G8X|A Chain A, Escherichia Coli Y209w Apoprotein
pdb|2G8X|B Chain B, Escherichia Coli Y209w Apoprotein
pdb|4GEV|A Chain A, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
pdb|4GEV|B Chain B, E. Coli Thymidylate Synthase Y209w Variant In Complex With
Substrate And A Cofactor Analog
Length = 264
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|3BFI|A Chain A, E. Coli Thymidylate Synthase Y209m Mutant Complexed With
5-nitro-dump
Length = 264
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2FTN|A Chain A, E. Coli Thymidylate Synthase Y94f Mutant
pdb|2FTO|X Chain X, Y94f Mutant Of Thymidylate Synthase Bound To
Thymidine-5'-Phosphate And 10-Propargyl-5,8-Dideazafolid
Acid
Length = 264
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1F4D|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
pdb|1F4D|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase C146s,
L143c Covalently Modified At C143 With
N-[tosyl-D-Prolinyl]amino- Ethanethiol
Length = 264
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1AIQ|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AIQ|B Chain B, Crystal Structure Of Thymidylate Synthase R126e Mutant
pdb|1AJM|A Chain A, Crystal Structure Of Thymidylate Synthase R126e Mutant
Length = 264
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1KCE|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1KCE|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1TLS|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1TLS|B Chain B, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|1F4B|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
pdb|1F4C|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4C|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Covalently Modified At C146 With
N-[tosyl-D-Prolinyl]amino-Ethanethiol
pdb|1F4E|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Tosyl-D-Proline
pdb|1F4F|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1F4F|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 722
pdb|1JTQ|A Chain A, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTQ|B Chain B, E. Coli Ts Complex With Dump And The
Pyrrolo(2,3-D)pyrimidine-Based Antifolate Ly341770
pdb|1JTU|A Chain A, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JTU|B Chain B, E. Coli Thymidylate Synthase In A Complex With Dump And
Ly338913, A Polyglutamylated
Pyrrolo(2,3-d)pyrimidine-based Antifolate
pdb|1JUT|A Chain A, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1JUT|B Chain B, E. Coli Thymidylate Synthase Bound To Dump And Ly338529, A
Pyrrolo(2, 3-d)pyrimidine-based Antifolate
pdb|1KZI|A Chain A, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|1KZI|B Chain B, Crystal Structure Of EctsDUMPTHF COMPLEX
pdb|2A9W|A Chain A, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|B Chain B, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|C Chain C, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2A9W|D Chain D, E. Coli Ts Complexed With Dump And Inhibitor Ga9
pdb|2FTQ|A Chain A, E. Coli Thymidylate Synthase At 1.8 A Resolution
pdb|1TSN|A Chain A, Thymidylate Synthase Ternary Complex With Fdump And
Methylenetetrahydrofolate
pdb|3B9H|A Chain A, E. Coli Thymidylate Synthase Complexed With
5-Nitro-2'-Deoxy Uridine
pdb|3BHL|A Chain A, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHL|B Chain B, E.Coli Thymidylate Synthase Complexes With 5-No2dump And
Tetrahydrofolate At 1.4 A Resolution
pdb|3BHR|A Chain A, E. Coli Ts Complexed With 5-No2dump And Tetrahydrofolate
At 1.9 A Resolution (Space Group 152)
pdb|4IW5|A Chain A, Thymidylate Synthase Ternary Complex With Dump And Cb3717
pdb|4IW5|B Chain B, Thymidylate Synthase Ternary Complex With Dump And Cb3717
Length = 264
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2TSC|A Chain A, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
pdb|2TSC|B Chain B, Structure, Multiple Site Binding, And Segmental
Accomodation In Thymidylate Synthase On Binding DUMP AND
An Anti-Folate
Length = 264
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1TLC|A Chain A, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TLC|B Chain B, Thymidylate Synthase Complexed With Dgmp And Folate Analog
1843u89
pdb|1TSD|A Chain A, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1TSD|B Chain B, Thymidylate Synthase Complex With 2'-deoxyuridine 5'-
Monophosphate (dump) And Folate Analog 1843u89
pdb|1DDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1DDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2', 5'-Dideoxyuridine (Ddurd)
pdb|1TDU|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1TDU|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717 And
2'- Deoxyuridine (durd)
pdb|1AN5|A Chain A, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AN5|B Chain B, E. Coli Thymidylate Synthase In Complex With Cb3717
pdb|1AXW|A Chain A, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1AXW|B Chain B, E. Coli Thymidylate Synthase In Complex With Methotrexate
(Mtx) And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BDU|A Chain A, E. Coli Thymidylate Synthase Complexed With Durd
pdb|1BID|A Chain A, E. Coli Thymidylate Synthase Complexed With Dump
pdb|1TJS|A Chain A, E. Coli Thymidylate Synthase
pdb|1TRG|A Chain A, E. Coli Thymidylate Synthase In Symmetric Complex With
Cb3717 And 2'- Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|A Chain A, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1SYN|B Chain B, E. Coli Thymidylate Synthase In Complex With Bw1843u89 And
2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 265
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 152 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 196
>pdb|2BBQ|A Chain A, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2BBQ|B Chain B, Structural Basis For Recognition Of Polyglutamyl Folates
By Thymidylate Synthase
pdb|2KCE|A Chain A, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|2KCE|B Chain B, Binding Of The Anticancer Drug Zd1694 To E. Coli
Thymidylate Synthase: Assessing Specificity And Affinity
pdb|3TMS|A Chain A, Plastic Adaptation Toward Mutations In Proteins:
Structural Comparison Of Thymidylate Synthases
pdb|1AOB|A Chain A, E. Coli Thymidylate Synthase Complexed With Ddurd
Length = 264
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2VF0|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
pdb|2VF0|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With 5no2dump And Bw1843u89
Length = 264
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1ZPR|A Chain A, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1ZPR|B Chain B, E. Coli Thymidylate Synthase Mutant E58q In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
Length = 264
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2VET|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
Complexed With Dump
pdb|3B5B|A Chain A, Crystal Structure Of The Thymidylate Synthase K48q
pdb|3B5B|B Chain B, Crystal Structure Of The Thymidylate Synthase K48q
Length = 264
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1JG0|A Chain A, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
pdb|1JG0|B Chain B, Crystal Structure Of Escherichia Coli Thymidylate Synthase
Complexed With 2'-Deoxyuridine-5'-Monophosphate And
N,O-Didansyl-L-Tyrosine
Length = 264
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1KZJ|A Chain A, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|B Chain B, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|C Chain C, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|D Chain D, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|E Chain E, Crystal Structure Of Ects W80g/dump/cb3717 Complex
pdb|1KZJ|F Chain F, Crystal Structure Of Ects W80g/dump/cb3717 Complex
Length = 264
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1EVF|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 211 IRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVF 270
I Y+ +NN D + NG G +G + P D GR
Sbjct: 69 IAYLHENNVTIWDEWADENGDLGPV--------------YGKQWRAWPTPD-----GRHI 109
Query: 271 NVTQHAVGVIVNKRVRTRIIPKS---AEKISSSVSRKTCLAQFYVADGKLSCQLYQRSAD 327
+ + + N RII + E +++ QFYVADGKLSCQLYQR+ D
Sbjct: 110 DQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRTXD 169
Query: 328 MGLGVPFNIASYSLLTYMIAHVTGLQ 353
+ LG+PFNIASY+LL +M+A L+
Sbjct: 170 VFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|1EVG|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli With Unmodified Catalytic Cysteine
Length = 264
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQR+ D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRTCDVFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|1EV5|A Chain A, Crystal Structure Analysis Of Ala167 Mutant Of Escherichia
Coli
Length = 264
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQR+ D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRAXDVFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|1F4G|A Chain A, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
pdb|1F4G|B Chain B, Crystal Structure Of E. Coli Thymidylate Synthase
Complexed With Sp- 876
Length = 264
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 37/45 (82%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMXAQQCDLE 195
>pdb|1CI7|A Chain A, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1CI7|B Chain B, Ternary Complex Of Thymidylate Synthase From Pneumocystis
Carinii
pdb|1F28|A Chain A, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|B Chain B, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|C Chain C, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
pdb|1F28|D Chain D, Crystal Structure Of Thymidylate Synthase From
Pneumocystis Carinii Bound To Dump And Bw1843u89
Length = 297
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 291 PKSAEKISSSVSRKTCLAQFYVA------DGKLSCQLYQRSADMGLGVPFNIASYSLLTY 344
P EK++ C QFYV +LSCQLYQRS DMGLGVPFNIASY+LLT
Sbjct: 162 PADLEKMALPPCHMFC--QFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTC 219
Query: 345 MIAHVTGL 352
MIAHV L
Sbjct: 220 MIAHVCDL 227
>pdb|1EV8|A Chain A, Crystal Structure Analysis Of Cys167 Mutant Of Escherichia
Coli
Length = 264
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 67/146 (45%), Gaps = 22/146 (15%)
Query: 211 IRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVF 270
I Y+ +NN D + NG G +G + P D GR
Sbjct: 69 IAYLHENNVTIWDEWADENGDLGPV--------------YGKQWRAWPTPD-----GRHI 109
Query: 271 NVTQHAVGVIVNKRVRTRIIPKS---AEKISSSVSRKTCLAQFYVADGKLSCQLYQRSAD 327
+ + + N RII + E +++ QFYVADGKLSCQLYQR D
Sbjct: 110 DQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPXHAFFQFYVADGKLSCQLYQRCXD 169
Query: 328 MGLGVPFNIASYSLLTYMIAHVTGLQ 353
+ LG+PFNIASY+LL +M+A L+
Sbjct: 170 VFLGLPFNIASYALLVHMMAQQXDLE 195
>pdb|1FFL|A Chain A, Crystal Structure Of The Apo-Thymidylate Synthase R166q
Mutant
pdb|1FWM|A Chain A, Crystal Structure Of The Thymidylate Synthase R166q Mutant
pdb|1FWM|B Chain B, Crystal Structure Of The Thymidylate Synthase R166q Mutant
Length = 264
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQ+S D+ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQQSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1DNA|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1DNA|B Chain B, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
pdb|1BJG|A Chain A, D221(169)n Mutant Does Not Promote Opening Of The Cofactor
Imidazolidine Ring
Length = 264
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 38/45 (84%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS ++ LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCNVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|1BQ1|A Chain A, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ1|B Chain B, E. Coli Thymidylate Synthase Mutant N177a In Complex With
Cb3717 And 2'-Deoxyuridine 5'-Monophosphate (Dump)
pdb|1BQ2|A Chain A, E. Coli Thymidylate Synthase Mutant N177a
Length = 264
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PF IASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCDVFLGLPFAIASYALLVHMMAQQCDLE 195
>pdb|1NCE|A Chain A, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
pdb|1NCE|B Chain B, Crystal Structure Of A Ternary Complex Of E. Coli
Thymidylate Synthase D169c With Dump And The Antifolate
Cb3717
Length = 264
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 37/45 (82%)
Query: 309 QFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS + LG+PFNIASY+LL +M+A L+
Sbjct: 151 QFYVADGKLSCQLYQRSCCVFLGLPFNIASYALLVHMMAQQCDLE 195
>pdb|2AAZ|A Chain A, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|B Chain B, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|C Chain C, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|D Chain D, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|E Chain E, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|F Chain F, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|G Chain G, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|H Chain H, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|I Chain I, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|J Chain J, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|K Chain K, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|L Chain L, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|M Chain M, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|N Chain N, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|O Chain O, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
pdb|2AAZ|P Chain P, Cryptococcus Neoformans Thymidylate Synthase Complexed
With Substrate And An Antifolate
Length = 317
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 78/175 (44%), Gaps = 21/175 (12%)
Query: 248 YGHGAVQKGMPFKDYHGK-TGRVFNVTQHAVGVIVNKRVRTRII-----PKSAEKISSSV 301
YG G + D G G+ + Q + I N RII PK ++
Sbjct: 127 YGFQWRHFGAEYTDADGDYKGKGVDQLQRVIDTIKNNPTDRRIILSAWNPKDLPLMALPP 186
Query: 302 SRKTCLAQFYV----ADG-----KLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 352
C QF+V AD KLSC +YQRS D+GLGVPFNIASY+LLT+MIA +T
Sbjct: 187 CHMFC--QFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDT 244
Query: 353 QRTS---NMTNSKGYRRGTRDLFSRPFRRHGTIP-LSVYMKVYKVGDIVDIKCAE 403
+ M ++ YR L ++ R P L ++GDI K +
Sbjct: 245 EPHEFILQMGDAHVYRDHVEPLKTQLEREPRDFPKLKWARSKEEIGDIDGFKVED 299
>pdb|2OIP|A Chain A, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|B Chain B, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|C Chain C, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|D Chain D, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|2OIP|E Chain E, Crystal Structure Of The S290g Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 519
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 282 NKRVRTRIIPKSAEKISSSVSRKTC--LAQFYVA-DGKLSCQLYQRSADMGLGVPFNIAS 338
N + R I+ S ++ C L+Q+YV D LSC LYQRS D+GLG PFNIAS
Sbjct: 376 NPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIAS 435
Query: 339 YSLLTYMIAHVTGLQ 353
Y++LT M+A V G +
Sbjct: 436 YAILTMMLAQVCGYE 450
>pdb|3HJ3|A Chain A, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|B Chain B, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|C Chain C, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
pdb|3HJ3|D Chain D, Crystal Structure Of The Chts-Dhfr F207a Non-Active Site
Mut
Length = 521
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 307 LAQFYVA-DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L+Q+YV D LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 405 LSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452
>pdb|1QZF|A Chain A, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|B Chain B, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|C Chain C, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|D Chain D, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1QZF|E Chain E, Crystal Structure Of Dhfr-Ts From Cryptosporidium Hominis
pdb|1SEJ|A Chain A, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|B Chain B, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|C Chain C, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|D Chain D, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
pdb|1SEJ|E Chain E, Crystal Structure Of Dihydrofolate Reductase-Thymidylate
Synthase From Cryptosporidium Hominis Bound To
1843u89NADPHDUMP
Length = 521
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 282 NKRVRTRIIPKSAEKISSSVSRKTC--LAQFYVA-DGKLSCQLYQRSADMGLGVPFNIAS 338
N + R I+ S ++ C L+Q+YV D LSC LYQRS D+GLG PFNIAS
Sbjct: 378 NPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIAS 437
Query: 339 YSLLTYMIAHVTGLQ 353
Y++LT M+A V G +
Sbjct: 438 YAILTMMLAQVCGYE 452
>pdb|3DL6|A Chain A, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|B Chain B, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|C Chain C, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|D Chain D, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
pdb|3DL6|E Chain E, Crystal Structure Of The A287fS290G ACTIVE SITE MUTANT OF
Ts-Dhfr From Cryptosporidium Hominis
Length = 521
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 282 NKRVRTRIIPKSAEKISSSVSRKTC--LAQFYVA-DGKLSCQLYQRSADMGLGVPFNIAS 338
N + R I+ S ++ C L+Q+YV D LSC LYQRS D+GLG PFNIAS
Sbjct: 378 NPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIAS 437
Query: 339 YSLLTYMIAHVTGLQ 353
Y++LT M+A V G +
Sbjct: 438 YAILTMMLAQVCGYE 452
>pdb|3DL5|A Chain A, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|B Chain B, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|C Chain C, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|D Chain D, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
pdb|3DL5|E Chain E, Crystal Structure Of The A287f Active Site Mutant Of Ts-
Dhfr From Cryptosporidium Hominis
Length = 521
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 282 NKRVRTRIIPKSAEKISSSVSRKTC--LAQFYVA-DGKLSCQLYQRSADMGLGVPFNIAS 338
N + R I+ S ++ C L+Q+YV D LSC LYQRS D+GLG PFNIAS
Sbjct: 378 NPKDRRHILTAWNPSALSQMALPPCHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIAS 437
Query: 339 YSLLTYMIAHVTGLQ 353
Y++LT M+A V G +
Sbjct: 438 YAILTMMLAQVCGYE 452
>pdb|1S1I|Q Chain Q, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is
In File 1s1h
Length = 100
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAES--------FYDRM 409
M S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK S FY
Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 410 TECVYSSPLTS 420
T VY+ +S
Sbjct: 61 TGVVYNVTKSS 71
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 251 GAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
G++QKGMP K Y GKTG V+NVT+ +VGVI+NK V R + K
Sbjct: 46 GSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEK 87
>pdb|3IZS|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O58|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O5H|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 60s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5E|T Chain T, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|T Chain T, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|T Chain T, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 160
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 8/71 (11%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAES--------FYDRM 409
M S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK S FY
Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60
Query: 410 TECVYSSPLTS 420
T VY+ +S
Sbjct: 61 TGVVYNVTKSS 71
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 240 KTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISS 299
K G + +G++QKGMP K Y GKTG V+NVT+ +VGVI+NK V R + K
Sbjct: 35 KVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVE 94
Query: 300 SVSRKTCLAQF 310
+ C +F
Sbjct: 95 HIKHSKCRQEF 105
>pdb|3JYW|Q Chain Q, Structure Of The 60s Proteins For Eukaryotic Ribosome
Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome
At 8.9a Resolution
Length = 116
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 361 SKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAES--------FYDRMTEC 412
S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK S FY T
Sbjct: 3 SHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGV 62
Query: 413 VYSSPLTS 420
VY+ +S
Sbjct: 63 VYNVTKSS 70
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 251 GAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
G++QKGMP K Y GKTG V+NVT+ +VGVI+NK V R + K
Sbjct: 45 GSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEK 86
>pdb|3IZR|U Chain U, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 164
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 44/74 (59%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEK 296
R K G ++ +GAV KGMP K YHG+TGRV+NVT+ A+GV +NK+V RII K
Sbjct: 32 RTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHV 91
Query: 297 ISSSVSRKTCLAQF 310
V C +F
Sbjct: 92 RVEHVQPSRCNEEF 105
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
M G R TRDLF+RPFR+ G IPL+ Y++ YKVG+ VD+K + + M Y
Sbjct: 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFY 57
>pdb|4F2V|A Chain A, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
pdb|4F2V|B Chain B, Crystal Structure Of De Novo Designed Serine Hydrolase,
Northeast Structural Genomics Consortium (Nesg) Target
Or165
Length = 272
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 61/146 (41%), Gaps = 22/146 (15%)
Query: 211 IRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVF 270
I Y+ +NN D + NG G HG + P D GR
Sbjct: 69 IAYLHENNVTILDEWADENGDLGPV--------------HGKQWRAWPTPD-----GRHI 109
Query: 271 NVTQHAVGVIVNKRVRTRIIPKS---AEKISSSVSRKTCLAQFYVADGKLSCQLYQRSAD 327
+ + + N RII + E + + QFYVADGKLSCQLY RS D
Sbjct: 110 DQITTVLNQLKNDPDSRRIIVSAWNVGELDKXANAPSHAFFQFYVADGKLSCQLYARSED 169
Query: 328 MGLGVPFNIASYSLLTYMIAHVTGLQ 353
+ L +PF IAS +LL + A L+
Sbjct: 170 VFLSLPFAIASGALLVHXXAQQCDLE 195
>pdb|3ZF7|U Chain U, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 159
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 38/71 (53%)
Query: 240 KTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISS 299
K G Y+ AV+ GMP K YHG+TG V+NVT VGVI+NK VR R + K
Sbjct: 35 KVGDYVDVVADAAVRAGMPHKYYHGRTGIVWNVTPRGVGVIINKPVRNRTVRKRICVRFE 94
Query: 300 SVSRKTCLAQF 310
V + C F
Sbjct: 95 HVRKSRCQEAF 105
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDI 399
M +S GY+ GTR LF++ FR+HG +S + +KVGD VD+
Sbjct: 1 MVHSHGYKCGTRHLFAKKFRKHGVPSVSTILTNFKVGDYVDV 42
>pdb|4A17|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|P Chain P, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 157
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 5/85 (5%)
Query: 240 KTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK----SAE 295
K G Y+ G+ KGMP+K YHG+TG+VFNV ++GVIV++ V R I K E
Sbjct: 35 KVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIE 94
Query: 296 KISSSVSRKTCLAQFYVADGKLSCQ 320
+ S + KT L++ Y A+ + +
Sbjct: 95 HVRPS-NVKTALSKRYQANDQAKAE 118
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
MT+S GYRR TR F++ ++ G + +S Y+ YKVG+ VDI S + M +Y
Sbjct: 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLY 57
>pdb|1TIS|A Chain A, Crystal Structure Of Thymidylate Synthase From T4 Phage
Length = 286
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 14/100 (14%)
Query: 263 HGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSS--------VSRKTC--LAQFYV 312
+GK R F + VI R + +P +I S+ ++ C QF V
Sbjct: 109 YGKQWRDFGGVDQIIEVID----RIKKLPNDRRQIVSAWNPAELKYMALPPCHMFYQFNV 164
Query: 313 ADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGL 352
+G L Q YQRS D+ LG+PFNIASY+ L +++A + L
Sbjct: 165 RNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNL 204
>pdb|1B02|A Chain A, Crystal Structure Of Thymidylate Synthase A From Bacillus
Subtilis
Length = 279
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 308 AQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
Q+YV GKL ++ RS DM LG PFN+ Y++L MIA VTG +
Sbjct: 165 TQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYE 210
>pdb|1BKO|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|C Chain C, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKO|D Chain D, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BKP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSF|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|A Chain A, Thermostable Thymidylate Synthase A From Bacillus Subtilis
pdb|1BSP|B Chain B, Thermostable Thymidylate Synthase A From Bacillus Subtilis
Length = 278
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 30/46 (65%)
Query: 308 AQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
Q+YV GKL ++ RS DM LG PFN+ Y++L MIA VTG +
Sbjct: 164 TQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYE 209
>pdb|3V8H|A Chain A, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|B Chain B, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|C Chain C, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
pdb|3V8H|D Chain D, Crystal Structure Of Thymidylate Synthase From
Burkholderia Thailandensis
Length = 327
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 316 KLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTG 351
++S LY RS D+GLG PFN+A + L ++ +TG
Sbjct: 210 EISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLTG 245
>pdb|3D54|D Chain D, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|H Chain H, Stucture Of Purlqs From Thermotoga Maritima
pdb|3D54|L Chain L, Stucture Of Purlqs From Thermotoga Maritima
Length = 213
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 12/99 (12%)
Query: 680 GINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAA 739
G N DR+ ++ GFE + + D LD ++ ++ PGGFSY D L
Sbjct: 12 GSNCDRDAYHALEINGFEPSYVGLDD------KLDDYELIILPGGFSYGDYL-----RPG 60
Query: 740 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778
++ E I ++ K R G+ NG Q++ +G
Sbjct: 61 AVAAREKIAFEIAKAAERG-KLIMGIXNGFQILIEMGLL 98
>pdb|1JPM|A Chain A, L-ala-d/l-glu Epimerase
pdb|1JPM|B Chain B, L-ala-d/l-glu Epimerase
pdb|1JPM|C Chain C, L-ala-d/l-glu Epimerase
pdb|1JPM|D Chain D, L-ala-d/l-glu Epimerase
pdb|1TKK|A Chain A, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|B Chain B, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|C Chain C, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|D Chain D, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|E Chain E, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|F Chain F, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|G Chain G, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
pdb|1TKK|H Chain H, The Structure Of A Substrate-Liganded Complex Of The
L-Ala- DL-Glu Epimerase From Bacillus Subtilis
Length = 366
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 623 IGPKYQYQPV-RDDIVGATLGKKVTR------IGPKYQYQPVRDDIVGATLGKKVISIAV 675
+G + QPV +DD+ G KKVT + + + P + V T +I+I +
Sbjct: 213 LGIELVEQPVHKDDLAGL---KKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKL 269
Query: 676 LREEGINGDREMSAMAQVCGFEVWDITVQDLLENKI 711
++ GI+G +++AMA+ CG E V ++E K+
Sbjct: 270 MKAGGISGAEKINAMAEACGVECM---VGSMIETKL 302
>pdb|3J21|R Chain R, Promiscuous Behavior Of Proteins In Archaeal Ribosomes
Revealed By Cryo-em: Implications For Evolution Of
Eukaryotic Ribosomes (50s Ribosomal Proteins)
Length = 97
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 17/75 (22%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSP 417
+ + +RR TR S+ RR G PL+ +++ ++VG V I S++ M
Sbjct: 2 VQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGM-------- 53
Query: 418 LTSFNHGIKPDPWFY 432
PDP F+
Sbjct: 54 ---------PDPRFH 59
>pdb|1Y1X|A Chain A, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
pdb|1Y1X|B Chain B, Structural Analysis Of A Homolog Of Programmed Cell Death
6 Protein From Leishmania Major Friedlin
Length = 191
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 465 VYSSPLTSFNHGIKPDPWF-YVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQ 523
VY+ N + WF VD G G +++ E+N L G+ F ++ +
Sbjct: 15 VYAPSARHMNDNQELMEWFRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDK 74
Query: 524 RHEVGLAFDEW-DLEYYTDIFRNKLKRNPTS 553
H + FDE+ DL ++ R ++ +S
Sbjct: 75 NHSGEITFDEFKDLHHFILSMREGFRKRDSS 105
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 761 FSFGVCNGCQLMNLLGWFSVSTQARQPYIKSRVRCPPLKKEKS 803
FSF + CQ +++ G +S + R Y K+R P L+++K+
Sbjct: 478 FSFELLCACQAVDIRGTAGLSKRTRALYDKTRTLVPYLEEDKT 520
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T++R + + +P G + A +GS K S L G+KT ++ I
Sbjct: 115 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 173
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T++R + + +P G + A +GS K S L G+KT ++ I
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T++R + + +P G + A +GS K S L G+KT ++ I
Sbjct: 116 TKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAI 174
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 30.4 bits (67), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 117 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 175
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1CG3|A Chain A, Structure Of The Mutant (R143l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQC----- 208
MAVA+ LT++V +SDL A R + G +HG Y ++ S
Sbjct: 191 MAVADILTSMVV-DVSDL-LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGV 248
Query: 209 -----LPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGH 250
L RYVD I + Y P E +TG +L K G+
Sbjct: 249 ATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGN 295
>pdb|1CG4|A Chain A, Structure Of The Mutant (R303l) Of Adenylosuccinate
Synthetase From E. Coli Complexed With, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQC----- 208
MAVA+ LT++V +SDL A R + G +HG Y ++ S
Sbjct: 191 MAVADILTSMVV-DVSDL-LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGV 248
Query: 209 -----LPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGH 250
L RYVD I + Y P E +TG +L K G+
Sbjct: 249 ATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGN 295
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 115 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1HON|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HON|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degree Celsius
pdb|1HOP|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
pdb|1HOP|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From Escherichia Coli At Ph
6.5 And 25 Degrees Celsius
Length = 431
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQC----- 208
MAVA+ LT++V +SDL A R + G +HG Y ++ S
Sbjct: 191 MAVADILTSMVV-DVSDL-LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGV 248
Query: 209 -----LPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGH 250
L RYVD I + Y P E +TG +L K G+
Sbjct: 249 ATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGN 295
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 119 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 177
>pdb|1CG1|A Chain A, Structure Of The Mutant (K16q) Of Adenylosuccinate
Synthetase From E. Coli Complexed With Hadacidin, Gdp,
6-Phosphoryl-Imp, And Mg2+
Length = 431
Score = 30.0 bits (66), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQC----- 208
MAVA+ LT++V +SDL A R + G +HG Y ++ S
Sbjct: 191 MAVADILTSMVV-DVSDL-LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGV 248
Query: 209 -----LPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGH 250
L RYVD I + Y P E +TG +L K G+
Sbjct: 249 ATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGN 295
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 267 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 270 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 325
>pdb|1CG0|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Hadacidin, Gdp, 6-Phosphoryl-Imp, And
Mg2+
pdb|1CH8|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With A Stringent Effector, Ppg2':3'p
pdb|1QF4|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1QF5|A Chain A, Design, Synthesis, And X-Ray Crystal Structure Of An
Enzyme Bound Bisubstrate Hybrid Inhibitor Of
Adenylosuccinate Synthetase
pdb|1CIB|A Chain A, Structure Of Adenylosuccinate Synthetase From E. Coli
Complexed With Gdp, Imp, Hadacidin, And No3
pdb|2GCQ|A Chain A, Fully Ligated E.Coli Adenylosuccinate Synthetase With Gtp,
2'-Deoxy- Imp And Hadacidin
pdb|1SON|A Chain A, Adenylosuccinate Synthetase In Complex With The Natural
Feedback Inhibitor Amp
pdb|1SOO|A Chain A, Adenylosuccinate Synthetase Inhibited By Hydantocidin
5'-Monophosphate
pdb|1ADE|A Chain A, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADE|B Chain B, Structure Of Adenylosuccinate Synthetase Ph 7 At 25
Degrees Celsius
pdb|1ADI|A Chain A, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1ADI|B Chain B, Structure Of Adenylosuccinate Synthetase At Ph 6.5 And 25
Degrees Celsius
pdb|1HOO|A Chain A, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1HOO|B Chain B, Structure Of Guanine Nucleotide (Gppcp) Complex Of
Adenylosuccinate Synthetase From E. Coli At Ph 6.5 And
25 Degrees Celsius
pdb|1GIM|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 100k (Ph 6.5)
pdb|1GIN|A Chain A, Crystal Structure Of Adenylosuccinate Synthetase From
Escherichia Coli Complexed With Gdp, Imp, Hadacidin,
No3-, And Mg2+. Data Collected At 298k (Ph 6.5).
pdb|1KSZ|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli, Data Collected At 298k
pdb|1NHT|A Chain A, Entrapment Of 6-Thiophosphoryl-Imp In The Active Site Of
Crystalline Adenylosuccinate Synthetase From Escherichia
Coli Data Collected At 100k
pdb|1JUY|A Chain A, Refined Crystal Structure Of Adenylosuccinate Synthetase
From Escherichia Coli Complexed With Hydantocidin 5'-
Phosphate Gdp, Hpo4(2-), Mg2+, And Hadacidin
Length = 431
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQC----- 208
MAVA+ LT++V +SDL A R + G +HG Y ++ S
Sbjct: 191 MAVADILTSMVV-DVSDL-LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGV 248
Query: 209 -----LPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGH 250
L RYVD I + Y P E +TG +L K G+
Sbjct: 249 ATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGN 295
>pdb|1KJX|A Chain A, Imp Complex Of E. Coli Adenylosuccinate Synthetase
pdb|1KKB|A Chain A, Complex Of Escherichia Coli Adenylosuccinate Synthetase
With Imp And Hadacidin
pdb|1KKF|A Chain A, Complex Of E. Coli Adenylosuccinate Synthetase With Imp,
Hadacidin, Pyrophosphate, And Mg
Length = 432
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 43/107 (40%), Gaps = 12/107 (11%)
Query: 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQC----- 208
MAVA+ LT++V +SDL A R + G +HG Y ++ S
Sbjct: 192 MAVADILTSMVV-DVSDL-LDQARQRGDFVMFEGAQGTLLDIDHGTYPYVTSSNTTAGGV 249
Query: 209 -----LPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGH 250
L RYVD I + Y P E +TG +L K G+
Sbjct: 250 ATGSGLGPRYVDYVLGILKAYSTRVGAGPFPTELFDETGEFLCKQGN 296
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFK-----GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 136 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 194
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 30.0 bits (66), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 29.6 bits (65), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 118 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 173
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 118 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 176
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 125 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 183
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 705 DLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 137 DLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 192
>pdb|2VYU|A Chain A, Crystal Structure Of Choline Binding Protein F From
Streptococcus Pneumoniae In The Presence Of A
Peptidoglycan Analogue (Tetrasaccharide-Pentapeptide)
Length = 338
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 478 KPDPWFYVDVMGKGKVALQEVNQKLGQIG 506
KP PW+Y+D GK Q+VN K G
Sbjct: 204 KPAPWYYLDASGKMLTDWQKVNGKWYYFG 232
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 122 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 180
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 702 TVQDLLENKITLDRFKG-----LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755
T DL ++K T+++ K + +P G + A +G+ K S L G+KT ++ I
Sbjct: 142 TKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAI 200
>pdb|2V04|A Chain A, Crystal Structure Of Choline Binding Protein F From
Streptococcus Pneumoniae
pdb|2V05|A Chain A, Crystal Structure Of Choline Binding Protein F From
Streptococcus Pneumoniae. Crystal Form Ii.
pdb|2X8M|A Chain A, Crystal Structure Of Cbpf In Complex With Ipratropium By
Soaking
pdb|2X8O|A Chain A, Crystal Structure Of Cbpf In Complex With Atropine By
Soaking
pdb|2X8P|A Chain A, Crystal Structure Of Cbpf In Complex With Atropine By Co-
Crystallization
Length = 311
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 478 KPDPWFYVDVMGKGKVALQEVNQKLGQIG 506
KP PW+Y+D GK Q+VN K G
Sbjct: 177 KPAPWYYLDASGKMLTDWQKVNGKWYYFG 205
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 636 IVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGI 681
+VGA + + ++ + Y Y P + ++G +LG V A R G+
Sbjct: 125 VVGAQVAQMLSMLSANYSYSPSQVQLIGHSLGAHVAGEAGSRTPGL 170
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 29.3 bits (64), Expect = 9.7, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 214 VDDNNKITEDYPMNPNGSPG-----KRERKKKTGRYLGKYGHGAVQKGMPFKD 261
++ + ++T + P+N +GS G K + ++TG LG + + G FKD
Sbjct: 19 LESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKD 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,425,319
Number of Sequences: 62578
Number of extensions: 1059773
Number of successful extensions: 2293
Number of sequences better than 100.0: 146
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 2148
Number of HSP's gapped (non-prelim): 174
length of query: 875
length of database: 14,973,337
effective HSP length: 107
effective length of query: 768
effective length of database: 8,277,491
effective search space: 6357113088
effective search space used: 6357113088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)