Query psy5570
Match_columns 875
No_of_seqs 500 out of 3408
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 20:54:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5570.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5570hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03206 phosphoribosylformylg 100.0 2E-101 4E-106 952.1 44.4 607 1-833 546-1228(1307)
2 TIGR01735 FGAM_synt phosphorib 100.0 1.5E-99 3E-104 941.3 43.6 613 1-833 552-1236(1310)
3 PRK05297 phosphoribosylformylg 100.0 8.9E-99 2E-103 937.5 44.5 614 1-834 546-1216(1290)
4 KOG1907|consensus 100.0 4.3E-97 9E-102 845.1 28.5 615 3-830 570-1238(1320)
5 TIGR01857 FGAM-synthase phosph 100.0 6.7E-94 1.4E-98 879.0 41.7 566 1-834 548-1172(1239)
6 PHA03366 FGAM-synthase; Provis 100.0 2.1E-90 4.5E-95 860.8 42.6 607 2-832 491-1220(1304)
7 TIGR01739 tegu_FGAM_synt herpe 100.0 8.2E-87 1.8E-91 826.2 43.2 608 1-832 399-1121(1202)
8 COG0046 PurL Phosphoribosylfor 100.0 1.5E-53 3.3E-58 497.1 21.1 389 1-596 327-742 (743)
9 PRK01213 phosphoribosylformylg 100.0 3.8E-41 8.2E-46 405.8 21.7 385 1-603 312-722 (724)
10 COG0047 PurL Phosphoribosylfor 100.0 4.7E-39 1E-43 330.1 16.8 151 670-833 2-167 (231)
11 TIGR01736 FGAM_synth_II phosph 100.0 5.1E-36 1.1E-40 361.1 21.4 390 1-601 301-713 (715)
12 PF13507 GATase_5: CobB/CobQ-l 100.0 9.1E-37 2E-41 325.5 11.2 165 670-834 1-186 (259)
13 PRK14090 phosphoribosylformylg 100.0 2.6E-31 5.6E-36 310.5 9.7 196 1-244 283-492 (601)
14 PRK01175 phosphoribosylformylg 100.0 7.5E-30 1.6E-34 273.0 17.6 162 670-834 3-186 (261)
15 cd01740 GATase1_FGAR_AT Type 1 99.9 6E-25 1.3E-29 232.7 14.6 152 673-832 1-171 (238)
16 PRK03619 phosphoribosylformylg 99.9 2.6E-24 5.6E-29 225.4 16.1 148 671-832 1-164 (219)
17 TIGR01737 FGAM_synth_I phospho 99.9 1.7E-23 3.6E-28 220.3 16.6 148 671-832 1-163 (227)
18 cd02193 PurL Formylglycinamide 99.8 3.4E-20 7.3E-25 200.0 11.8 88 132-232 2-90 (272)
19 cd02204 PurL_repeat2 PurL subu 99.8 4.4E-19 9.5E-24 189.6 14.6 100 119-231 1-101 (264)
20 KOG1907|consensus 99.8 9E-20 1.9E-24 211.8 7.3 207 457-703 143-359 (1320)
21 PLN03206 phosphoribosylformylg 99.8 2.9E-19 6.4E-24 223.4 6.3 187 457-680 129-319 (1307)
22 PRK04306 50S ribosomal protein 99.7 7.6E-19 1.7E-23 160.5 1.9 68 358-425 2-71 (98)
23 TIGR01735 FGAM_synt phosphorib 99.7 6.8E-17 1.5E-21 203.6 17.7 291 130-593 288-621 (1310)
24 PTZ00189 60S ribosomal protein 99.7 2.8E-18 6.1E-23 168.5 1.9 68 358-425 1-70 (160)
25 PLN00190 60S ribosomal protein 99.7 2.9E-18 6.3E-23 168.2 1.7 68 358-425 1-70 (158)
26 PRK14090 phosphoribosylformylg 99.7 2.7E-16 5.9E-21 184.9 17.0 279 117-595 49-339 (601)
27 COG0118 HisH Glutamine amidotr 99.7 1.1E-16 2.3E-21 163.4 7.6 96 671-782 2-107 (204)
28 PF01157 Ribosomal_L21e: Ribos 99.7 1.9E-17 4.1E-22 152.1 1.7 63 359-421 1-64 (99)
29 TIGR03267 methan_mark_2 putati 99.7 2.5E-15 5.3E-20 166.3 18.6 125 73-227 2-134 (323)
30 COG2139 RPL21A Ribosomal prote 99.6 3.2E-16 6.9E-21 141.0 2.6 67 360-426 2-70 (98)
31 cd02203 PurL_repeat1 PurL subu 99.6 5.5E-15 1.2E-19 162.7 11.7 95 131-231 26-121 (313)
32 PRK05297 phosphoribosylformylg 99.6 4.7E-16 1E-20 196.6 2.3 174 457-668 127-308 (1290)
33 PRK13526 glutamine amidotransf 99.5 2.1E-14 4.6E-19 145.8 6.6 108 671-800 3-114 (179)
34 TIGR01857 FGAM-synthase phosph 99.4 1.8E-13 3.9E-18 170.9 6.5 59 523-584 179-237 (1239)
35 PRK13142 hisH imidazole glycer 99.4 7.5E-13 1.6E-17 136.4 6.7 86 673-776 2-87 (192)
36 PRK11780 isoprenoid biosynthes 99.3 4.1E-12 8.8E-17 133.4 11.3 154 671-827 2-210 (217)
37 CHL00188 hisH imidazole glycer 99.3 1.5E-12 3.3E-17 136.0 7.9 96 671-782 2-106 (210)
38 PRK14004 hisH imidazole glycer 99.3 2E-12 4.4E-17 135.1 7.5 87 673-775 2-88 (210)
39 PRK13146 hisH imidazole glycer 99.3 2.8E-12 6E-17 133.9 7.4 94 670-776 1-94 (209)
40 TIGR01736 FGAM_synth_II phosph 99.3 1.9E-11 4.2E-16 148.6 13.3 118 438-593 230-355 (715)
41 COG0693 ThiJ Putative intracel 99.3 2.2E-11 4.7E-16 124.1 11.2 146 671-828 3-185 (188)
42 PTZ00189 60S ribosomal protein 99.3 6.2E-13 1.3E-17 131.2 -0.4 74 237-310 32-109 (160)
43 PLN02832 glutamine amidotransf 99.3 7.7E-12 1.7E-16 133.4 7.8 88 670-775 1-88 (248)
44 PLN00190 60S ribosomal protein 99.3 1.2E-12 2.6E-17 128.9 1.4 75 237-311 32-110 (158)
45 cd00396 PurM-like AIR (aminoim 99.3 1.8E-11 3.9E-16 128.0 9.9 81 133-231 2-84 (222)
46 cd02192 PurM-like3 AIR synthas 99.3 8.1E-11 1.7E-15 128.3 15.2 90 117-229 35-126 (283)
47 PRK13152 hisH imidazole glycer 99.2 1.6E-11 3.5E-16 127.1 8.4 87 673-775 2-89 (201)
48 PRK13143 hisH imidazole glycer 99.2 1.7E-11 3.8E-16 126.9 7.7 87 671-775 1-87 (200)
49 PRK05731 thiamine monophosphat 99.2 5.5E-11 1.2E-15 131.2 10.7 94 117-228 25-123 (318)
50 PRK13170 hisH imidazole glycer 99.2 2.5E-11 5.5E-16 125.4 7.2 86 671-775 1-86 (196)
51 PLN02617 imidazole glycerol ph 99.2 5E-11 1.1E-15 139.8 9.5 98 669-782 5-112 (538)
52 KOG1732|consensus 99.2 1.1E-11 2.4E-16 122.9 3.2 65 358-422 1-66 (160)
53 PRK01213 phosphoribosylformylg 99.2 1.6E-10 3.5E-15 140.8 13.7 115 440-592 243-365 (724)
54 PRK13181 hisH imidazole glycer 99.2 5E-11 1.1E-15 123.2 7.4 87 673-775 2-88 (199)
55 TIGR01379 thiL thiamine-monoph 99.1 2.7E-10 5.8E-15 125.8 13.2 95 117-229 24-122 (317)
56 TIGR03800 PLP_synth_Pdx2 pyrid 99.1 6.7E-11 1.5E-15 121.3 7.3 86 672-775 1-86 (184)
57 cd03133 GATase1_ES1 Type 1 glu 99.1 2.2E-10 4.8E-15 120.0 11.2 144 678-827 11-207 (213)
58 TIGR01382 PfpI intracellular p 99.1 3.6E-10 7.8E-15 112.5 11.4 129 672-814 1-154 (166)
59 PRK13527 glutamine amidotransf 99.1 1.5E-10 3.3E-15 119.7 9.1 91 671-775 1-93 (200)
60 cd01750 GATase1_CobQ Type 1 gl 99.1 1.8E-10 3.9E-15 118.9 8.3 89 673-776 1-89 (194)
61 cd03134 GATase1_PfpI_like A ty 99.1 9.3E-10 2E-14 109.5 11.4 127 672-812 1-153 (165)
62 cd01748 GATase1_IGP_Synthase T 99.0 3.1E-10 6.7E-15 117.1 7.4 85 676-775 3-87 (198)
63 cd02194 ThiL ThiL (Thiamine-mo 99.0 1.3E-09 2.8E-14 118.8 12.4 92 117-229 24-121 (291)
64 cd03169 GATase1_PfpI_1 Type 1 99.0 1.4E-09 3.1E-14 110.2 11.8 129 672-814 1-169 (180)
65 COG0207 ThyA Thymidylate synth 99.0 1.6E-10 3.4E-15 123.0 4.8 50 304-353 150-199 (268)
66 PF01157 Ribosomal_L21e: Ribos 99.0 7.9E-11 1.7E-15 108.7 2.2 65 237-301 31-99 (99)
67 PRK13525 glutamine amidotransf 99.0 4.1E-10 8.8E-15 115.9 6.8 87 670-774 1-87 (189)
68 cd02196 PurM PurM (Aminoimidaz 99.0 1.5E-09 3.2E-14 119.0 11.2 95 115-227 2-104 (297)
69 cd03147 GATase1_Ydr533c_like T 99.0 1E-09 2.3E-14 116.4 8.9 115 688-814 31-220 (231)
70 KOG0623|consensus 99.0 9.6E-10 2.1E-14 118.8 8.6 95 673-782 3-107 (541)
71 cd02195 SelD Selenophosphate s 99.0 1.4E-09 3E-14 118.7 8.9 96 116-228 40-136 (287)
72 cd03130 GATase1_CobB Type 1 gl 99.0 1.4E-09 3.1E-14 112.6 8.6 88 674-774 2-90 (198)
73 PRK04155 chaperone protein Hch 99.0 3.3E-09 7.2E-14 115.9 11.7 115 688-814 83-270 (287)
74 TIGR02124 hypE hydrogenase exp 99.0 3.8E-09 8.2E-14 117.0 12.3 91 117-230 21-116 (320)
75 KOG0673|consensus 99.0 5E-10 1.1E-14 115.6 4.8 50 304-353 175-224 (293)
76 PRK13141 hisH imidazole glycer 98.9 1.9E-09 4.1E-14 111.9 8.0 87 673-775 2-88 (205)
77 TIGR01855 IMP_synth_hisH imida 98.9 1.9E-09 4.1E-14 111.4 6.5 85 675-775 2-87 (196)
78 cd03135 GATase1_DJ-1 Type 1 gl 98.9 9.3E-09 2E-13 101.6 11.0 119 673-803 1-142 (163)
79 PRK11574 oxidative-stress-resi 98.8 2.8E-08 6.2E-13 102.0 12.5 131 670-812 2-159 (196)
80 PRK13821 thyA thymidylate synt 98.8 3.6E-09 7.9E-14 116.0 4.8 50 304-353 192-243 (323)
81 cd03148 GATase1_EcHsp31_like T 98.8 2.2E-08 4.9E-13 106.4 10.6 100 678-789 20-165 (232)
82 COG0046 PurL Phosphoribosylfor 98.8 3.4E-08 7.3E-13 118.0 13.0 320 74-593 50-381 (743)
83 TIGR01383 not_thiJ DJ-1 family 98.8 2.5E-08 5.5E-13 100.4 10.0 105 672-788 1-125 (179)
84 cd02197 HypE HypE (Hydrogenase 98.8 1.2E-08 2.5E-13 111.7 8.1 86 118-226 27-117 (293)
85 KOG2764|consensus 98.8 2.5E-08 5.3E-13 103.9 9.9 156 672-841 7-190 (247)
86 cd03141 GATase1_Hsp31_like Typ 98.8 2.9E-08 6.4E-13 104.5 10.2 124 678-814 17-210 (221)
87 TIGR03284 thym_sym thymidylate 98.8 4.7E-09 1E-13 114.1 4.3 50 304-353 178-227 (296)
88 PF01965 DJ-1_PfpI: DJ-1/PfpI 98.7 9.7E-09 2.1E-13 101.0 5.5 97 707-814 29-135 (147)
89 cd03140 GATase1_PfpI_3 Type 1 98.7 4.3E-08 9.4E-13 98.7 9.4 99 673-785 1-117 (170)
90 cd03137 GATase1_AraC_1 AraC tr 98.7 1.1E-07 2.4E-12 96.6 12.3 100 673-785 1-122 (187)
91 PRK04306 50S ribosomal protein 98.7 6.7E-09 1.4E-13 95.7 3.0 63 237-301 33-97 (98)
92 cd03132 GATase1_catalase Type 98.7 7.4E-08 1.6E-12 93.9 10.5 98 671-780 2-116 (142)
93 cd01749 GATase1_PB Glutamine A 98.7 3.5E-08 7.5E-13 101.0 8.4 85 673-775 1-85 (183)
94 cd01742 GATase1_GMP_Synthase T 98.7 3.3E-08 7.1E-13 100.2 7.9 88 676-781 3-90 (181)
95 TIGR00888 guaA_Nterm GMP synth 98.7 3.9E-08 8.6E-13 100.7 7.6 86 676-781 3-90 (188)
96 KOG1732|consensus 98.7 9E-09 2E-13 102.5 2.1 76 236-311 31-110 (160)
97 cd03139 GATase1_PfpI_2 Type 1 98.6 1.1E-07 2.3E-12 96.1 9.2 100 673-785 1-120 (183)
98 TIGR00878 purM phosphoribosyla 98.6 1.6E-07 3.5E-12 104.7 11.2 92 116-226 36-135 (332)
99 cd06061 PurM-like1 AIR synthas 98.6 6.2E-08 1.3E-12 105.8 7.1 89 117-230 32-122 (298)
100 PRK01827 thyA thymidylate synt 98.6 3.1E-08 6.6E-13 106.9 4.2 50 304-353 146-195 (264)
101 cd01745 GATase1_2 Subgroup of 98.6 7.1E-08 1.5E-12 99.2 6.4 90 685-775 22-116 (189)
102 PF00117 GATase: Glutamine ami 98.6 1.1E-07 2.3E-12 97.2 7.2 87 675-775 1-88 (192)
103 COG2144 Selenophosphate synthe 98.5 5.1E-07 1.1E-11 97.1 11.8 87 117-225 43-130 (324)
104 PTZ00164 bifunctional dihydrof 98.5 4.9E-08 1.1E-12 114.1 4.2 50 304-353 396-445 (514)
105 PRK00784 cobyric acid synthase 98.5 1.4E-07 3E-12 110.4 7.9 90 670-775 251-341 (488)
106 PRK00758 GMP synthase subunit 98.5 2.1E-07 4.5E-12 95.1 7.9 85 673-781 2-87 (184)
107 PRK06490 glutamine amidotransf 98.5 4.8E-07 1E-11 96.7 10.8 98 668-775 5-102 (239)
108 PRK06895 putative anthranilate 98.5 3E-07 6.4E-12 94.6 8.7 91 671-781 2-92 (190)
109 PRK06278 cobyrinic acid a,c-di 98.5 1.6E-07 3.4E-12 109.3 7.0 80 671-775 1-81 (476)
110 cd03136 GATase1_AraC_ArgR_like 98.5 8.5E-07 1.8E-11 90.1 11.6 99 673-785 1-121 (185)
111 PRK01077 cobyrinic acid a,c-di 98.5 4.9E-07 1.1E-11 104.9 11.0 92 670-774 245-337 (451)
112 TIGR00379 cobB cobyrinic acid 98.5 4.9E-07 1.1E-11 104.8 10.7 92 670-774 244-336 (449)
113 PF00586 AIRS: AIR synthase re 98.5 8.3E-08 1.8E-12 87.9 2.8 91 118-226 2-95 (96)
114 cd01744 GATase1_CPSase Small c 98.4 5.7E-07 1.2E-11 91.6 7.9 83 674-774 2-84 (178)
115 cd03138 GATase1_AraC_2 AraC tr 98.4 1.4E-06 3E-11 89.3 10.4 101 673-785 1-130 (195)
116 PRK06186 hypothetical protein; 98.4 1.3E-06 2.7E-11 92.7 9.7 87 672-774 3-98 (229)
117 PRK05385 phosphoribosylaminoim 98.4 9.5E-07 2.1E-11 98.3 8.8 92 117-226 37-135 (327)
118 cd00351 TS_Pyrimidine_HMase Th 98.4 2.9E-07 6.3E-12 96.9 4.2 50 304-353 144-193 (215)
119 cd03144 GATase1_ScBLP_like Typ 98.3 5.9E-07 1.3E-11 85.6 5.7 87 672-771 1-89 (114)
120 PRK08250 glutamine amidotransf 98.3 1.9E-06 4.1E-11 91.9 10.2 99 671-775 1-100 (235)
121 cd01741 GATase1_1 Subgroup of 98.3 2.3E-06 5E-11 87.4 9.4 97 673-781 2-101 (188)
122 PRK07053 glutamine amidotransf 98.3 3.5E-06 7.6E-11 89.8 10.6 97 671-775 3-99 (234)
123 cd01653 GATase1 Type 1 glutami 98.3 3.5E-06 7.6E-11 74.5 8.9 89 673-772 1-92 (115)
124 TIGR00313 cobQ cobyric acid sy 98.3 1.1E-06 2.4E-11 102.6 6.6 87 671-774 248-334 (475)
125 cd01746 GATase1_CTP_Synthase T 98.2 3.3E-05 7.1E-10 82.6 16.2 88 672-774 2-99 (235)
126 TIGR03283 thy_syn_methano thym 98.2 8.8E-07 1.9E-11 92.2 4.1 50 304-353 129-178 (199)
127 PLN02347 GMP synthetase 98.2 3.5E-06 7.6E-11 99.6 9.2 93 672-781 12-106 (536)
128 PRK00074 guaA GMP synthase; Re 98.2 2.3E-06 4.9E-11 100.9 7.5 89 672-781 5-95 (511)
129 TIGR01815 TrpE-clade3 anthrani 98.2 4.3E-06 9.3E-11 101.7 10.1 89 669-775 515-604 (717)
130 PRK13896 cobyrinic acid a,c-di 98.2 4.8E-06 1E-10 96.1 9.9 89 671-774 234-323 (433)
131 PRK05380 pyrG CTP synthetase; 98.2 4.4E-06 9.6E-11 97.6 9.7 91 669-774 287-387 (533)
132 PRK00956 thyA thymidylate synt 98.2 1.1E-06 2.4E-11 92.1 4.2 50 304-353 132-181 (208)
133 PLN02327 CTP synthase 98.2 7.2E-06 1.6E-10 96.1 10.7 91 669-774 296-406 (557)
134 PF07685 GATase_3: CobB/CobQ-l 98.2 3.4E-06 7.3E-11 84.5 6.8 56 710-774 2-57 (158)
135 PRK00943 selenophosphate synth 98.2 1.7E-05 3.7E-10 89.2 13.2 94 110-226 44-140 (347)
136 cd01743 GATase1_Anthranilate_S 98.2 6.8E-06 1.5E-10 83.9 8.9 82 678-775 5-87 (184)
137 PF00303 Thymidylat_synt: Thym 98.2 1.6E-06 3.6E-11 94.2 4.6 50 304-353 151-200 (269)
138 PRK11249 katE hydroperoxidase 98.1 1.1E-05 2.5E-10 97.8 11.0 101 668-779 595-711 (752)
139 cd03146 GAT1_Peptidase_E Type 98.1 6E-06 1.3E-10 86.6 7.3 98 668-775 29-130 (212)
140 PRK07765 para-aminobenzoate sy 98.1 1.1E-05 2.3E-10 85.0 8.7 89 671-774 1-91 (214)
141 COG0518 GuaA GMP synthase - Gl 98.1 1.5E-05 3.2E-10 83.1 9.4 97 672-781 3-99 (198)
142 PF07722 Peptidase_C26: Peptid 98.1 5.5E-06 1.2E-10 87.3 6.1 88 685-774 27-121 (217)
143 TIGR00337 PyrG CTP synthase. C 98.0 1.6E-05 3.5E-10 93.0 10.1 91 669-774 288-387 (525)
144 cd02691 PurM-like2 AIR synthas 98.0 3.6E-05 7.8E-10 86.7 12.5 91 115-226 34-126 (346)
145 PRK12564 carbamoyl phosphate s 98.0 1.4E-05 3E-10 90.3 9.2 88 670-775 177-264 (360)
146 PRK09393 ftrA transcriptional 98.0 2.6E-05 5.5E-10 86.4 11.0 101 671-785 10-132 (322)
147 PRK13566 anthranilate synthase 98.0 1.6E-05 3.4E-10 97.0 10.0 90 668-775 524-614 (720)
148 PF01174 SNO: SNO glutamine am 98.0 1.4E-05 3.1E-10 82.0 8.0 76 683-774 7-83 (188)
149 PLN02335 anthranilate synthase 98.0 1.5E-05 3.2E-10 84.5 8.2 91 668-774 16-106 (222)
150 cd03128 GAT_1 Type 1 glutamine 98.0 1.7E-05 3.7E-10 66.9 7.1 88 674-772 2-92 (92)
151 PF13278 DUF4066: Putative ami 98.0 2.4E-05 5.3E-10 78.1 9.3 97 676-785 1-119 (166)
152 COG0311 PDX2 Predicted glutami 98.0 1.8E-05 3.8E-10 80.7 8.2 86 671-774 1-87 (194)
153 CHL00101 trpG anthranilate syn 97.9 2.8E-05 6.1E-10 80.2 8.5 91 673-781 2-92 (190)
154 COG2139 RPL21A Ribosomal prote 97.9 6E-06 1.3E-10 75.3 2.9 65 239-303 33-97 (98)
155 PRK05665 amidotransferase; Pro 97.9 6.3E-05 1.4E-09 80.7 11.0 94 670-775 2-107 (240)
156 PRK05637 anthranilate synthase 97.9 3.3E-05 7.2E-10 81.1 8.2 86 672-775 3-89 (208)
157 PRK12838 carbamoyl phosphate s 97.9 2.9E-05 6.4E-10 87.5 8.3 84 670-774 167-252 (354)
158 CHL00197 carA carbamoyl-phosph 97.9 3.8E-05 8.2E-10 87.3 9.1 88 670-775 192-279 (382)
159 PRK05670 anthranilate synthase 97.9 3.3E-05 7.1E-10 79.4 7.9 86 673-775 2-88 (189)
160 TIGR01368 CPSaseIIsmall carbam 97.8 3.1E-05 6.8E-10 87.4 7.4 85 670-775 173-259 (358)
161 PRK11366 puuD gamma-glutamyl-g 97.8 3.8E-05 8.1E-10 83.0 7.4 85 687-775 31-123 (254)
162 cd01747 GATase1_Glutamyl_Hydro 97.8 3.7E-05 8E-10 83.9 7.3 80 687-774 25-107 (273)
163 PRK07649 para-aminobenzoate/an 97.8 5.9E-05 1.3E-09 78.3 8.1 91 673-781 2-92 (195)
164 COG0504 PyrG CTP synthase (UTP 97.8 4.3E-05 9.3E-10 87.6 7.4 164 671-851 289-496 (533)
165 PF02769 AIRS_C: AIR synthase 97.8 2.1E-05 4.5E-10 77.2 3.9 98 436-565 38-145 (153)
166 TIGR00566 trpG_papA glutamine 97.7 9.3E-05 2E-09 76.3 8.1 91 673-781 2-92 (188)
167 PRK07567 glutamine amidotransf 97.7 0.00017 3.6E-09 77.5 9.6 88 685-775 18-109 (242)
168 PRK06774 para-aminobenzoate sy 97.7 0.00011 2.3E-09 75.8 7.9 81 684-781 12-92 (191)
169 PRK08007 para-aminobenzoate sy 97.6 0.00015 3.2E-09 74.8 8.2 77 684-775 12-88 (187)
170 PRK09065 glutamine amidotransf 97.6 0.00016 3.4E-09 77.4 7.4 74 690-774 30-103 (237)
171 COG0611 ThiL Thiamine monophos 97.6 0.0014 3.1E-08 72.9 14.9 90 116-225 25-120 (317)
172 PLN02771 carbamoyl-phosphate s 97.5 0.00023 5.1E-09 81.5 8.7 86 671-775 241-326 (415)
173 PRK14105 selenophosphate synth 97.5 0.00096 2.1E-08 75.1 12.5 89 117-226 47-137 (345)
174 TIGR01823 PabB-fungal aminodeo 97.3 0.00062 1.3E-08 83.8 9.4 95 669-775 4-102 (742)
175 TIGR00476 selD selenium donor 97.3 0.00079 1.7E-08 75.8 8.5 117 74-226 23-141 (347)
176 PRK08857 para-aminobenzoate sy 97.2 0.0011 2.5E-08 68.5 8.8 86 673-774 2-87 (193)
177 KOG2387|consensus 97.2 0.0012 2.6E-08 74.8 9.2 89 670-773 298-406 (585)
178 COG2071 Predicted glutamine am 97.2 0.00077 1.7E-08 71.7 7.2 87 686-774 30-122 (243)
179 COG1492 CobQ Cobyric acid synt 97.1 0.00093 2E-08 77.5 7.0 90 669-774 250-340 (486)
180 COG0512 PabA Anthranilate/para 97.1 0.002 4.3E-08 66.6 8.7 88 671-775 2-90 (191)
181 COG1797 CobB Cobyrinic acid a, 96.8 0.0049 1.1E-07 70.7 9.3 100 671-782 246-358 (451)
182 COG0505 CarA Carbamoylphosphat 96.8 0.0042 9.1E-08 69.4 8.4 85 670-774 179-265 (368)
183 PRK09522 bifunctional glutamin 96.6 0.0052 1.1E-07 73.1 8.3 88 671-775 2-93 (531)
184 PLN02889 oxo-acid-lyase/anthra 96.5 0.0068 1.5E-07 75.8 8.8 93 669-775 80-178 (918)
185 PRK14607 bifunctional glutamin 96.5 0.0047 1E-07 73.6 6.9 76 685-775 13-89 (534)
186 PRK05282 (alpha)-aspartyl dipe 96.3 0.013 2.8E-07 62.9 8.6 97 669-777 30-131 (233)
187 PF09825 BPL_N: Biotin-protein 96.2 0.0077 1.7E-07 68.4 6.6 91 671-773 1-96 (367)
188 COG3442 Predicted glutamine am 95.9 0.011 2.4E-07 62.2 5.4 75 688-774 27-102 (250)
189 KOG0370|consensus 95.2 0.063 1.4E-06 66.0 8.9 86 668-774 170-255 (1435)
190 cd03129 GAT1_Peptidase_E_like 94.9 0.083 1.8E-06 55.3 7.8 97 669-775 28-130 (210)
191 PLN02557 phosphoribosylformylg 94.5 0.58 1.3E-05 53.8 14.0 89 117-226 86-180 (379)
192 KOG1224|consensus 94.2 0.14 3E-06 59.8 8.2 96 671-784 15-117 (767)
193 KOG3210|consensus 94.2 0.11 2.4E-06 52.7 6.4 90 670-774 11-106 (226)
194 KOG1559|consensus 94.2 0.057 1.2E-06 57.6 4.6 97 669-774 51-162 (340)
195 KOG1622|consensus 93.5 0.077 1.7E-06 60.9 4.4 82 672-775 18-104 (552)
196 COG3155 ElbB Uncharacterized p 93.5 0.13 2.9E-06 51.8 5.5 60 711-774 81-143 (217)
197 KOG3179|consensus 93.4 0.12 2.6E-06 54.0 5.2 77 689-775 32-109 (245)
198 COG4977 Transcriptional regula 93.3 0.17 3.6E-06 57.0 6.6 61 713-785 74-134 (328)
199 COG4285 Uncharacterized conser 88.7 1.3 2.9E-05 46.9 7.4 86 671-769 1-92 (253)
200 PRK05368 homoserine O-succinyl 88.0 3 6.6E-05 46.6 10.1 50 713-774 97-150 (302)
201 TIGR02069 cyanophycinase cyano 87.4 2.2 4.7E-05 46.4 8.4 97 667-774 25-131 (250)
202 cd03145 GAT1_cyanophycinase Ty 87.1 1.6 3.5E-05 46.2 7.0 98 668-775 27-133 (217)
203 PF03575 Peptidase_S51: Peptid 86.5 0.62 1.3E-05 46.5 3.3 80 686-775 4-85 (154)
204 cd02203 PurL_repeat1 PurL subu 81.1 0.45 9.7E-06 53.0 -0.3 18 555-572 1-18 (313)
205 COG0309 HypE Hydrogenase matur 77.7 2.4 5.1E-05 47.9 4.0 92 450-565 218-311 (339)
206 TIGR02667 moaB_proteo molybden 77.1 8 0.00017 39.3 7.3 46 685-730 25-78 (163)
207 PRK11104 hemG protoporphyrinog 77.0 10 0.00022 38.9 8.1 83 671-768 1-87 (177)
208 PF03698 UPF0180: Uncharacteri 76.8 5.2 0.00011 36.3 5.2 44 672-726 3-46 (80)
209 cd03143 A4_beta-galactosidase_ 72.9 10 0.00023 37.4 6.9 58 685-764 29-86 (154)
210 PF06283 ThuA: Trehalose utili 71.7 7.4 0.00016 40.8 5.7 63 688-766 25-88 (217)
211 PF08532 Glyco_hydro_42M: Beta 71.4 5 0.00011 42.0 4.4 60 685-766 33-92 (207)
212 PRK09271 flavodoxin; Provision 70.7 24 0.00052 35.4 8.9 61 671-731 1-68 (160)
213 COG1973 HypE Hydrogenase matur 70.0 6.3 0.00014 44.4 4.8 85 118-225 112-200 (449)
214 PRK03094 hypothetical protein; 68.7 10 0.00023 34.4 5.1 44 672-726 3-46 (80)
215 TIGR01739 tegu_FGAM_synt herpe 67.6 27 0.00058 46.2 10.6 113 433-565 307-441 (1202)
216 TIGR01754 flav_RNR ribonucleot 65.0 31 0.00067 33.7 8.2 84 671-768 1-90 (140)
217 COG3340 PepE Peptidase E [Amin 63.6 13 0.00028 39.7 5.5 91 669-769 31-128 (224)
218 KOG3939|consensus 61.2 14 0.0003 40.2 5.2 93 119-225 2-95 (312)
219 cd03131 GATase1_HTS Type 1 glu 59.8 4.8 0.0001 41.6 1.5 54 711-774 58-113 (175)
220 KOG0026|consensus 59.6 32 0.00069 35.4 7.1 25 748-774 83-107 (223)
221 TIGR00476 selD selenium donor 58.3 6 0.00013 44.8 2.1 35 450-491 232-267 (347)
222 PRK06242 flavodoxin; Provision 58.2 35 0.00077 33.2 7.3 81 671-768 1-83 (150)
223 PF09822 ABC_transp_aux: ABC-t 58.1 40 0.00087 36.6 8.4 74 669-764 145-230 (271)
224 COG4090 Uncharacterized protei 58.0 18 0.00039 35.8 4.9 55 710-779 80-135 (154)
225 PRK05568 flavodoxin; Provision 52.9 75 0.0016 30.7 8.5 52 672-725 3-58 (142)
226 PF12724 Flavodoxin_5: Flavodo 52.0 29 0.00062 34.1 5.5 58 675-732 2-60 (143)
227 PRK06756 flavodoxin; Provision 51.2 78 0.0017 31.0 8.4 85 671-770 2-94 (148)
228 TIGR02336 1,3-beta-galactosyl- 50.3 21 0.00046 43.8 5.0 69 689-766 475-543 (719)
229 cd03142 GATase1_ThuA Type 1 gl 49.7 45 0.00097 35.7 6.8 67 685-765 26-94 (215)
230 COG0303 MoeA Molybdopterin bio 46.5 32 0.0007 40.1 5.6 46 684-729 205-256 (404)
231 PRK14690 molybdopterin biosynt 44.6 33 0.00072 40.2 5.3 45 685-729 223-273 (419)
232 TIGR01755 flav_wrbA NAD(P)H:qu 44.5 65 0.0014 33.5 7.0 59 671-729 1-82 (197)
233 COG4635 HemG Flavodoxin [Energ 42.9 80 0.0017 32.6 6.9 83 671-769 1-89 (175)
234 TIGR00200 cinA_nterm competenc 42.0 72 0.0016 37.4 7.5 77 685-762 23-110 (413)
235 PF09508 Lact_bio_phlase: Lact 41.5 41 0.0009 41.2 5.5 71 687-766 470-540 (716)
236 COG3019 Predicted metal-bindin 38.2 82 0.0018 31.7 6.1 76 672-765 27-109 (149)
237 PRK05569 flavodoxin; Provision 37.6 1.7E+02 0.0038 28.1 8.4 51 672-724 3-57 (141)
238 PF10087 DUF2325: Uncharacteri 36.1 1.4E+02 0.003 27.5 7.0 68 682-767 10-82 (97)
239 PRK10680 molybdopterin biosynt 36.0 69 0.0015 37.5 6.2 44 686-729 208-257 (411)
240 PRK03708 ppnK inorganic polyph 34.9 1.3E+02 0.0027 33.4 7.7 77 671-768 1-89 (277)
241 PRK06703 flavodoxin; Provision 33.9 1.1E+02 0.0023 30.1 6.4 50 671-722 2-55 (151)
242 PRK03767 NAD(P)H:quinone oxido 32.6 87 0.0019 32.5 5.7 61 671-731 2-85 (200)
243 PRK07116 flavodoxin; Provision 32.3 1.4E+02 0.003 29.9 6.9 32 670-701 2-34 (160)
244 PRK14497 putative molybdopteri 32.2 60 0.0013 39.5 5.0 44 686-729 210-259 (546)
245 cd00887 MoeA MoeA family. Memb 31.5 61 0.0013 37.6 4.7 45 685-729 198-248 (394)
246 PRK13337 putative lipid kinase 30.5 1.6E+02 0.0034 32.7 7.6 53 671-724 2-66 (304)
247 cd00886 MogA_MoaB MogA_MoaB fa 29.7 1.9E+02 0.0041 28.8 7.4 45 686-730 24-76 (152)
248 TIGR03521 GldG gliding-associa 28.8 2.2E+02 0.0047 34.7 9.0 78 669-764 182-267 (552)
249 PRK07308 flavodoxin; Validated 28.6 2.9E+02 0.0063 27.0 8.4 54 672-728 3-60 (146)
250 PRK01215 competence damage-ind 27.5 1.9E+02 0.0041 31.9 7.4 73 686-759 27-110 (264)
251 PRK01911 ppnK inorganic polyph 27.4 2.1E+02 0.0045 32.1 7.8 78 671-768 1-97 (292)
252 PRK14491 putative bifunctional 26.9 95 0.0021 38.2 5.5 62 669-730 366-448 (597)
253 cd08183 Fe-ADH2 Iron-containin 25.9 1E+02 0.0022 35.4 5.2 71 671-745 23-101 (374)
254 PRK02645 ppnK inorganic polyph 25.2 2.2E+02 0.0049 31.9 7.7 77 671-767 4-89 (305)
255 PRK03673 hypothetical protein; 25.2 2.1E+02 0.0046 33.4 7.7 75 685-760 24-109 (396)
256 PLN02929 NADH kinase 24.9 1.7E+02 0.0036 33.1 6.5 59 686-768 38-96 (301)
257 PRK02155 ppnK NAD(+)/NADH kina 24.7 2.3E+02 0.0051 31.6 7.6 77 672-768 7-96 (291)
258 PRK11914 diacylglycerol kinase 24.5 96 0.0021 34.3 4.6 55 669-724 7-73 (306)
259 PRK14571 D-alanyl-alanine synt 23.8 94 0.002 34.1 4.4 50 671-721 1-59 (299)
260 PRK13055 putative lipid kinase 23.6 2.5E+02 0.0055 31.6 7.8 53 671-724 3-68 (334)
261 PF10727 Rossmann-like: Rossma 22.8 1.2E+02 0.0027 29.7 4.5 33 668-703 8-41 (127)
262 PRK14498 putative molybdopteri 22.4 1.1E+02 0.0024 37.6 5.0 46 685-730 216-267 (633)
263 PRK09267 flavodoxin FldA; Vali 22.3 2.3E+02 0.0049 28.4 6.4 53 671-725 2-56 (169)
264 PRK12359 flavodoxin FldB; Prov 21.8 2.5E+02 0.0053 29.0 6.6 50 671-722 1-52 (172)
265 PRK14569 D-alanyl-alanine synt 21.2 2.2E+02 0.0047 31.5 6.6 33 670-703 3-43 (296)
266 PRK03372 ppnK inorganic polyph 21.1 3.3E+02 0.0071 30.8 7.9 77 672-768 7-105 (306)
267 PLN02699 Bifunctional molybdop 20.6 1.5E+02 0.0032 37.0 5.5 45 686-730 213-264 (659)
268 PLN02204 diacylglycerol kinase 20.5 1.4E+02 0.0031 36.7 5.2 55 670-724 159-227 (601)
269 PRK06249 2-dehydropantoate 2-r 20.4 3.7E+02 0.008 29.8 8.2 33 669-704 4-37 (313)
270 PF09897 DUF2124: Uncharacteri 20.3 63 0.0014 32.7 1.9 54 710-778 76-129 (147)
No 1
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=1.9e-101 Score=952.07 Aligned_cols=607 Identities=35% Similarity=0.517 Sum_probs=500.7
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcc-------------------cEEEecccccccCCCCc-ccc
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHA-------------------PCISHIVTLTSYISIPQ-VFT 54 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-------------------~~~~~~~~~~l~~~~P~-~~~ 54 (875)
|.|+|.|++++++.. +|+++++|+. +++++ ..++|||...|++++|+ .|+
T Consensus 546 m~l~V~p~~~~~f~~----i~~re~~~~~vVG~vT~~~rl~v~~~~~~~~~~~~g~~~~~~~~dlp~~~l~~~~P~~~~~ 621 (1307)
T PLN03206 546 DALLIKPESRDLLQS----ICDRERCSMAVIGTIDGSGRVVLVDSAAPEKCEANGLPPPPPAVDLDLEKVLGDMPQKTFE 621 (1307)
T ss_pred heeeECcccHHHHHH----HHHHcCCCeEEEEEEecCCeEEEEECCccccccccccccCceeEEEEhHHhcCCCCccccc
Confidence 899999999999999 9999999996 33232 34578988889999999 998
Q ss_pred cccCCCCCCCCCCCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEE
Q psy5570 55 LARAPGFPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAA 134 (875)
Q Consensus 55 ~~~~~~~~~~~~~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~a 134 (875)
.++.++...+.++|...+++++|+++|++||||||+||++||||+|||+||+||+|||||.|++|++|+++...+.+|+|
T Consensus 622 ~~~~~~~~~~~~~~~~~~~~~~l~~vL~~pnVaSK~~l~~~~D~~V~g~vv~~~~vGp~q~p~aD~aV~~~~~~~~~g~a 701 (1307)
T PLN03206 622 FKRVANKLEPLDIPPGITVMDALKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGPLQIPLADVAVIAQTHTGLTGGA 701 (1307)
T ss_pred cccccccccccccCCCcCHHHHHHHHhcCCccccccchhhhcccccCceEcccCccCCccCCCcceeEEEEeCCCCeEEE
Confidence 88865444444444456899999999999999999999999999999999999999999999999999998765679999
Q ss_pred EEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc----hhcccccccccc
Q psy5570 135 TSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG----IYDHLDRSQCLP 210 (875)
Q Consensus 135 ms~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~----l~~a~~a~~~~~ 210 (875)
||+|+||+++.+|||+||++||+||+|||+|++..+++++.+++||| |++++|+ ||++ |+|
T Consensus 702 ~s~G~~p~~~~~dp~~ga~~AV~Ea~~Nlvaa~~~~l~di~~s~nw~----------~~~~~p~~~~~l~~a-----v~g 766 (1307)
T PLN03206 702 CAIGEQPIKGLVDPKAMARLAVGEALTNLVWAKVTALSDVKASGNWM----------YAAKLDGEGADMYDA-----AVA 766 (1307)
T ss_pred EEecCCCceeeeCHHHHHHHHHHHHHhHhhccCCCcHHHeEEEcChh----------HhhcCCCCHHHHHHH-----HHH
Confidence 99999999999999999999999999999999877899999999999 8888886 6666 999
Q ss_pred hHHhhhhcCCcccCCCCCCCCCCc--cccccccccc-cccccccccccCCCccccCCCcceecceeeecccEEEEccccc
Q psy5570 211 IRYVDDNNKITEDYPMNPNGSPGK--RERKKKTGRY-LGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRT 287 (875)
Q Consensus 211 l~d~~~~lgiP~i~gkdsm~~~~~--~~~~~~~~~~-~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ 287 (875)
++|+|++||||+|+|||||||++. ++.+..|+|| |++++. + .+++.
T Consensus 767 ~~~~~~~Lgipii~GKdSls~~~~~~~~~~~~P~TLvIs~~~~------------------v-------------~Dv~~ 815 (1307)
T PLN03206 767 LRDAMIELGVAIDGGKDSLSMAAQAGGEVVKAPGNLVISAYVT------------------C-------------PDITK 815 (1307)
T ss_pred HHHHHHHcCCCcccCeecCCCCCCCCCCCcCCCCCEEEEEEEE------------------c-------------CCccc
Confidence 999999999999999999999875 3567777777 555542 1 12222
Q ss_pred ccccccccccCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCC
Q psy5570 288 RIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRG 367 (875)
Q Consensus 288 ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~ 367 (875)
.+
T Consensus 816 ~v------------------------------------------------------------------------------ 817 (1307)
T PLN03206 816 TV------------------------------------------------------------------------------ 817 (1307)
T ss_pred Cc------------------------------------------------------------------------------
Confidence 33
Q ss_pred ccccccccccccCCCCcceeeEEeecCCEEEE---ecccccccCccccccC-CcccccCC--CCCCCCCcccCchHHHHH
Q psy5570 368 TRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDI---KCAESFYDRMTECVYS-SPLTSFNH--GIKPDPWFYVDVMGKGKV 441 (875)
Q Consensus 368 Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I---~~~~sv~kg~p~~~~g-~~~~v~~~--G~~p~~~~~~~~~~~~~~ 441 (875)
+++||+. ||.+++ .|... .++-| .+.+++++ +..|+ +++++.+|.
T Consensus 818 -----tp~lK~~--------------G~~vlL~idlG~~~------~~LGGS~~~q~~~~~g~~~Pd----v~d~~~lK~ 868 (1307)
T PLN03206 818 -----TPDLKLG--------------DDGVLLHVDLGKGK------RRLGGSALAQAYDQIGDDCPD----LDDVAYLKK 868 (1307)
T ss_pred -----ChhhcCC--------------CCEEEEEEecCCCC------cCccccHHHHHhCccCCCCCC----CCCHHHHHH
Confidence 3334321 333222 11110 11111 12334555 44899 888999999
Q ss_pred HHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcc
Q psy5570 442 AFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQR 516 (875)
Q Consensus 442 ~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 516 (875)
+|+.++ +| +|.|+||+|| ||++||+||| |++++|++ ||+.... .
T Consensus 869 ~f~av~~Li~~glV~A~HDvSdGGL~~ALaEMA-fag~~G~~------Idl~~~~------------------------~ 917 (1307)
T PLN03206 869 AFEATQDLIAKRLISAGHDISDGGLVVTLLEMA-FAGNCGIN------VDLPSSG------------------------H 917 (1307)
T ss_pred HHHHHHHHHHCCCeeEEEeCCcCHHHHHHHHHH-hhcCCcEE------EEeCCcc------------------------c
Confidence 999999 88 8999999999 8999999999 99999999 8875311 0
Q ss_pred hhhhhhccccceee--EecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHH
Q psy5570 517 TKLCIVQRHEVGLA--FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLI 594 (875)
Q Consensus 517 ~~~~~LFsE~~G~v--v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~ 594 (875)
+.++.||+|++|++ |.+++.+.+.++++. .++.+..||+++++ ..+.|..+|+.+.+.++++|+++
T Consensus 918 ~~~~~LFsEs~G~VieV~~e~~~~v~~~l~~------~gi~~~vIG~vt~~------~~i~I~~~g~~~l~~~l~eL~~~ 985 (1307)
T PLN03206 918 SAFETLFAEELGLVLEVSRKNLDAVMEKLAA------AGVTAEVIGQVTAS------PLIEVKVDGATCLSEKTASLRDM 985 (1307)
T ss_pred hHHHHHhCCCccEEEEEehhHHHHHHHHHHH------CCCCeEEEEEECCC------CeEEEEECCEEEEecCHHHHHHH
Confidence 13478999999977 556677888898987 68889999999875 35777778888888999999999
Q ss_pred HHHHHHHHHhhhcCccchhhhhhhccccCCCcee--cCCCCcccccccccccccccCCcccCCCCccccccccccccceE
Q psy5570 595 WERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQPVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVIS 672 (875)
Q Consensus 595 w~~ts~~i~~~~~np~~a~~e~~~~~~~~~p~~~--f~p~~~~~~~~~~~~~~~~~~~thn~p~~~~p~~ga~~~~~~~k 672 (875)
|++|||+++++|+||.|+++|+..+.++.++.++ |+|... ..++ ..+.++||
T Consensus 986 W~~tS~~le~l~~~~~~~~~e~~~~~~~~~~~~~l~f~~~~~-----------------------~~~~---~~~~~~pk 1039 (1307)
T PLN03206 986 WEETSFQLEKLQRLESCVAQEKEGLKSRKAPTWKLSFTPAFT-----------------------DKKI---MNATSKPK 1039 (1307)
T ss_pred HhccChhhhhccCCchhhhHHHhhhhccCCceeecccCcccc-----------------------cccc---ccCCCCCe
Confidence 9999999999999999999998766665555332 444310 0011 12457899
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+|++|||+||++||++||+++||++++||++||.++...|++|++|+|||||||||+++++++||+++++|++++++|+
T Consensus 1040 VaVl~~pGtN~~~e~~~Af~~aGf~~~~V~~~dl~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~ 1119 (1307)
T PLN03206 1040 VAIIREEGSNGDREMAAAFYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQ 1119 (1307)
T ss_pred EEEEECCCCCCHHHHHHHHHHcCCceEEEEeeecccccccccceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHCCCceEEEEehhHHHHHhcCCCCCCc-------------cccccCCCCeEEeccEEec--cC------Cc--eEEE
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLLGWFSVST-------------QARQPYIKSRVRCPPLKKE--KS------GV--NITR 809 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~elGlLpg~~-------------~t~~~n~~~~f~~~~v~v~--~~------~~--~~~r 809 (875)
+|++++|+|+||||||||||+++|||||.. +++.+|.++||+||||.+. ++ ++ ..+.
T Consensus 1120 ~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~~p~l~~N~s~rfesr~v~v~V~~s~si~l~~~~G~~l~ 1199 (1307)
T PLN03206 1120 EFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPSQPRFVHNESGRFECRFTSVTIEDSPAIMLKGMEGSTLG 1199 (1307)
T ss_pred HHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccCCceeeecCCCCeEEeceEEEECCCCChhhcccCCCEEE
Confidence 999878999999999999999999999862 4568899999999999984 21 23 4688
Q ss_pred eecce-----eecCHHHHHHHHhCCCcee
Q psy5570 810 LSITL-----NFSTSDTLSWLLDSNTNVT 833 (875)
Q Consensus 810 ~pi~~-----~f~~~~~l~~l~~~~~~~~ 833 (875)
+||+| ||.+++++++|++|||-++
T Consensus 1200 i~vaHgEGr~~~~~~~~l~~l~~~gqva~ 1228 (1307)
T PLN03206 1200 VWAAHGEGRAYFPDESVLDEVLKSNLAPV 1228 (1307)
T ss_pred EEEEcCCCCeecCCHHHHHHHHhcCeEEE
Confidence 88999 5567778999999998653
No 2
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=100.00 E-value=1.5e-99 Score=941.26 Aligned_cols=613 Identities=29% Similarity=0.434 Sum_probs=496.1
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcc---------------------cEEEecccccccCCCCc-c
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHA---------------------PCISHIVTLTSYISIPQ-V 52 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~---------------------~~~~~~~~~~l~~~~P~-~ 52 (875)
|+++|.|++.+++.. +|+++++|+. +++++ ..++|||...|++++|+ +
T Consensus 552 ~vl~v~~~~~~~f~~----i~~~~~~~~~vIG~vt~~~~l~v~~~~~~~~~~~~~~~~~~~~~~vdl~~~~L~~~~P~~~ 627 (1310)
T TIGR01735 552 YVLLVRAENLEIFTA----ICERERCPFAVVGTATGDGRLTLVDDTPVRRNGQGDAPSHFPNNPVDLPLEVLLGKMPKMT 627 (1310)
T ss_pred EEEEECcccHHHHHH----HHHHcCCCEEEEEEECCCceEEEEecCcccccccccccccCCCeEEEeEHHHHcCCCCccc
Confidence 789999999999999 9999999985 22222 34689988889999999 9
Q ss_pred cccccCCCCCCCCCCCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEE
Q psy5570 53 FTLARAPGFPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRG 132 (875)
Q Consensus 53 ~~~~~~~~~~~~~~~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g 132 (875)
|+.++.++...++++|...+++++|+++|++||||||+||++||||+|||+||+||||||||.|++|+||++++.++.+|
T Consensus 628 ~~~~~~~~~~~~~~~~~~~~~~~~l~~vL~~pnVaSK~~l~~~~D~~V~g~tv~~~~vGp~q~p~aDaaV~~~~~~~~~G 707 (1310)
T TIGR01735 628 RFVQRKAPMLQPLDIPPGLDLHEALERVLRLPAVASKRFLITIGDRSVGGLVARDQMVGPWQTPLADVAVTAASFDTYTG 707 (1310)
T ss_pred cccccccccccccccCCCcCHHHHHHHHhcCCccccccchhhhcccccCCcEeeccCcCCCCCCCcCeEEEEecCCCceE
Confidence 99988654444445555569999999999999999999999999999999999999999999999999999998788999
Q ss_pred EEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc----hhcccccccc
Q psy5570 133 AATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG----IYDHLDRSQC 208 (875)
Q Consensus 133 ~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~----l~~a~~a~~~ 208 (875)
+|||+|+||+++.+|||+||++||+||+|||+++|+.++++|++|+||| |++++|+ ||++ |
T Consensus 708 ~ama~G~~P~~~~idP~~gA~~AV~EAl~NlaaaG~~~l~~i~~s~Nwm----------~~~~~pge~~~l~~a-----v 772 (1310)
T TIGR01735 708 EAMAIGERPPKALLDPKASARLAVGEAITNLAAALVGDLSDVKLSANWM----------AAAGHPGEDAALYDA-----V 772 (1310)
T ss_pred EEEEEcCCCCeeccCHHHHHHHHHHHHHhheeecCCcCHHHccccccch----------hhcCCCCCHHHHHHH-----H
Confidence 9999999999999999999999999999999999998999999999999 8888886 7766 8
Q ss_pred cchHHhhhhcCCcccCCCCCCCCCCcc------ccccccccc-cccccccccccCCCccccCCCcceecceeeecccEEE
Q psy5570 209 LPIRYVDDNNKITEDYPMNPNGSPGKR------ERKKKTGRY-LGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIV 281 (875)
Q Consensus 209 ~~l~d~~~~lgiP~i~gkdsm~~~~~~------~~~~~~~~~-~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v 281 (875)
+||.|+|++||||+|+|||||||.... +.+..|+++ +++++.
T Consensus 773 ~al~eac~~LGipiigGKdSls~~~~~~~~G~~~~v~~PpTlvisA~g~------------------------------- 821 (1310)
T TIGR01735 773 KAVSELCPALGIAIPVGKDSLSMKTRWQDNGETKSVTAPGSLVISAFAP------------------------------- 821 (1310)
T ss_pred HHHHHHHHHcCCCccccccccccccccccCCCcCccccCCCcEEEEEEE-------------------------------
Confidence 899999999999999999999986531 223334444 233321
Q ss_pred EcccccccccccccccCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCC
Q psy5570 282 NKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNS 361 (875)
Q Consensus 282 ~k~v~~ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~s 361 (875)
.++++..+||+++.
T Consensus 822 v~Dv~k~vTp~lk~------------------------------------------------------------------ 835 (1310)
T TIGR01735 822 VPDVRKTVTPDLKH------------------------------------------------------------------ 835 (1310)
T ss_pred ecCHhhccChhhcc------------------------------------------------------------------
Confidence 12333333333322
Q ss_pred CCccCCccccccccccccCCCCcceeeEEeecCCE--EEE-ecccccccCccccccC-CcccccCC--CCCCCCCcccCc
Q psy5570 362 KGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDI--VDI-KCAESFYDRMTECVYS-SPLTSFNH--GIKPDPWFYVDV 435 (875)
Q Consensus 362 kG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~--V~I-~~~~sv~kg~p~~~~g-~~~~v~~~--G~~p~~~~~~~~ 435 (875)
.| ||. +.| .+... .+.-| .+.+++++ +..|+ +|+
T Consensus 836 -----------------~g-------------gd~~Li~i~lg~~~------~~LGGS~laq~~~~~g~~~P~----vd~ 875 (1310)
T TIGR01735 836 -----------------DK-------------GDSHLLLVDLGPGK------NRLGGSALAQVFGQLGGDCPD----LDD 875 (1310)
T ss_pred -----------------CC-------------CCceEEEEEccCCc------ccchHHHHHHHhccccCCCCC----CCc
Confidence 10 121 221 11100 00001 12334555 44888 878
Q ss_pred hHHHHHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhh
Q psy5570 436 MGKGKVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFI 510 (875)
Q Consensus 436 ~~~~~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~ 510 (875)
.+.++.+|+.++ ++ +|+|+||+|| ||++||+||| |++++|++ ||+...+
T Consensus 876 ~~~lk~~f~~i~~li~~glV~A~HDvSdGGL~~aLaEMA-fag~~G~~------Idl~~i~------------------- 929 (1310)
T TIGR01735 876 PERLKAFFAVMQGLVAEGLLLAYHDRSDGGLVTTLLEMA-FAGHCGLD------VDLDALG------------------- 929 (1310)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEeeCCcChHHHHHHHHH-HhCCCcEE------EEeCCCC-------------------
Confidence 999999999999 78 8999999999 9999999999 99999999 9876322
Q ss_pred hhhhcchhhhhhccccceee--EecCCHHHHHHHHHhhcCCCCCCCceeecc--cccCcccccceeeEEEEECCEeeccc
Q psy5570 511 YFIVQRTKLCIVQRHEVGLA--FDEWDLEYYTDIFRNKLKRNPTSVECFDLA--QSNSEHSRHWFFKISVAVNNEPVLNE 586 (875)
Q Consensus 511 ~~~~~~~~~~~LFsE~~G~v--v~~~d~~~v~~~f~~~l~r~p~~ve~~~IG--qvnseh~~h~~~~~~i~~~g~~i~~~ 586 (875)
.++...||+|++|++ |.+++.+.+.+++++ .++.+..|| +++++ ..+.|..+++.+++.
T Consensus 930 -----~~~~~~LFsEs~G~VieV~~e~~~~v~~~l~~------~Gi~~~viGig~~~~~------~~i~I~~~g~~l~~~ 992 (1310)
T TIGR01735 930 -----DSLFAVLFNEELGAVIQVAKPDLAAVLELLRA------AGLTALILGIGTPTGH------PMIRISVNGATLLSE 992 (1310)
T ss_pred -----CcHHHHHhCCCCcEEEEEehHHHHHHHHHHHh------CCCceEEEEEEEECCC------CEEEEEeCCEEEeeC
Confidence 122467999999977 555667778888886 677777766 55544 357788899999999
Q ss_pred cHHHHHHHHHHHHHHHHhhhcCccchhhhhhhccccCCCceecCCCCcccccccccccccccCCcccCCCCccccccccc
Q psy5570 587 DLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATL 666 (875)
Q Consensus 587 ~l~~L~~~w~~ts~~i~~~~~np~~a~~e~~~~~~~~~p~~~f~p~~~~~~~~~~~~~~~~~~~thn~p~~~~p~~ga~~ 666 (875)
++++|+++|++||++++++|+||.|+++|++.+.++.+|+++.... +.. +. ....|+. .
T Consensus 993 ~~~eL~~~W~~ts~~~~~l~~~~~~~~~e~~~~~~~~~~~~~~~~~-------~~~--------~~---~~~~p~~---~ 1051 (1310)
T TIGR01735 993 KRSELRDIWEETSFQLQRLRDNPECAEEEFEGLRDRDGPGLKLPLT-------FDV--------NE---DIAAPFI---N 1051 (1310)
T ss_pred cHHHHHHHHHhhhHhhcccccCchhhhHHHhhhhcccCCCcccccc-------cCc--------cc---ccccccc---c
Confidence 9999999999999999999999999999988877777776652111 000 00 0011221 2
Q ss_pred cccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchh
Q psy5570 667 GKKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEG 746 (875)
Q Consensus 667 ~~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~ 746 (875)
...+|||+|++|||+||++||++||+++||++++||++||..+..+|++|++|++||||||||+++++++||+++++|++
T Consensus 1052 ~~~~p~vail~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~~~l~~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~ 1131 (1310)
T TIGR01735 1052 KGVRPKVAILREQGVNGDREMAAAFDRAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPR 1131 (1310)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHhCCCcEEEEEeccccCCcchhheeEEEEcCCCCCccchhHHHHHHHHHHhChH
Confidence 34679999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHCCCceEEEEehhHHHHH-hcCCCCCCc--cccccCCCCeEEeccEEec--cC------Cc--eEEEeecc
Q psy5570 747 IKTQLNKFIARSDTFSFGVCNGCQLMN-LLGWFSVST--QARQPYIKSRVRCPPLKKE--KS------GV--NITRLSIT 813 (875)
Q Consensus 747 i~~~v~~f~~r~g~~vLGICnGfQiL~-elGlLpg~~--~t~~~n~~~~f~~~~v~v~--~~------~~--~~~r~pi~ 813 (875)
++++|++|++++|+|+||||||||||+ ++||||+.. +++.+|.++||+||||.+. ++ ++ ..+.+||+
T Consensus 1132 ~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~~fe~r~~~~~v~~s~s~~~~~~~g~~l~~~va 1211 (1310)
T TIGR01735 1132 LRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSERFEARVASVRVGESPSIMLRGMAGSRLPVAVA 1211 (1310)
T ss_pred HHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCCCeEEeeeEEEECCCCChhhhhcCCCEEEEEeE
Confidence 999999999778999999999999999 999999864 5789999999999999984 21 23 46888899
Q ss_pred e-----eecCHHHHHHHHhCCCcee
Q psy5570 814 L-----NFSTSDTLSWLLDSNTNVT 833 (875)
Q Consensus 814 ~-----~f~~~~~l~~l~~~~~~~~ 833 (875)
| ||++++++++|++|||-++
T Consensus 1212 HgEGr~~~~~~~~~~~l~~~~~ia~ 1236 (1310)
T TIGR01735 1212 HGEGYAAFSSPELQAQADASGLAAL 1236 (1310)
T ss_pred cCCCCeeeCCHHHHHHHHhCCeEEE
Confidence 9 5789888999999998653
No 3
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=100.00 E-value=8.9e-99 Score=937.49 Aligned_cols=614 Identities=27% Similarity=0.364 Sum_probs=498.7
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccE--------EEecccccccCCCCc-ccccccCCCCCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPC--------ISHIVTLTSYISIPQ-VFTLARAPGFPTTA 65 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------~~~~~~~~l~~~~P~-~~~~~~~~~~~~~~ 65 (875)
|+++|.|++.+++.. +|+++++|+. ++.++.+ ++|+|...|++++|+ +++.+++++...++
T Consensus 546 mlv~V~~e~~e~~~~----i~~~~~l~~~vIG~vt~~~~l~v~~~~~g~~~vdl~~~~L~~~~p~~~~~~~~~~~~~~~~ 621 (1290)
T PRK05297 546 YVLAIAPEDLELFEA----ICERERCPFAVVGEATEERHLTLEDSHFDNKPVDLPLDVLLGKPPKMHRDVKTVKAKGPAL 621 (1290)
T ss_pred EEEEEcchhHHHHHH----HHHhcCCCEEEEEEEeCCCeEEEEecCCCceEEEEEHHHhcCCCCceecCccccccccccc
Confidence 789999999999999 9999999985 4344444 378988889999999 99988864433333
Q ss_pred CCCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccc
Q psy5570 66 HTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGL 145 (875)
Q Consensus 66 ~~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~ 145 (875)
.. +..+++++|+++|++||||||+||++||||+|||+||+||||||||.|++|+||++++.++.+|+|||+|+||+++.
T Consensus 622 ~~-~~~~~~~~l~~vL~~pnV~SK~~l~~~~D~~V~g~tv~~p~vGp~q~p~~DaaV~~~~~~~~~g~ama~G~~P~~~~ 700 (1290)
T PRK05297 622 DY-SGIDLAEAVERVLRLPTVASKSFLITIGDRSVTGLVARDQMVGPWQVPVADCAVTAASYDGYAGEAMAMGERTPVAL 700 (1290)
T ss_pred CC-CCcCHHHHHHHHhcCCccccccchhhccCcccCCCEeecCCcCCCCCCCCCeEEEEecCCCCeEEEEEEcCCCCeec
Confidence 32 24589999999999999999999999999999999999999999999999999999987889999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchH-HhhhhcCCccc
Q psy5570 146 VDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIR-YVDDNNKITED 223 (875)
Q Consensus 146 ~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~-d~~~~lgiP~i 223 (875)
+|||+||++||+||+|||+|+|+.++++|++|+||| |++++|+ .++++++ |+|++ |+|++||+|+|
T Consensus 701 ~dP~~ga~~AV~EA~~Nlvaag~~~~~~i~ls~N~~----------~~~~~p~~~a~L~~a--v~a~~~e~c~~Lgipii 768 (1290)
T PRK05297 701 LDAAASARMAVGEALTNIAAAPIGDLKRIKLSANWM----------AAAGHPGEDARLYDA--VKAVGMELCPALGITIP 768 (1290)
T ss_pred cCHHHHHHHHHHHHHhhheecCCccccceEEEEEEe----------ccCCCCchHHHHHHH--HHHHHHHHHHHcCCCcc
Confidence 999999999999999999999998999999999999 9999998 6777766 99999 99999999999
Q ss_pred CCCCCCCCCCc------cccccccccc-cccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccc
Q psy5570 224 YPMNPNGSPGK------RERKKKTGRY-LGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEK 296 (875)
Q Consensus 224 ~gkdsm~~~~~------~~~~~~~~~~-~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~ 296 (875)
+|||||||..+ .+.+..|+++ +++++. ..+++..+|
T Consensus 769 gGkdSmS~~t~yne~~~~~~v~iPpTlvisa~g~-------------------------------v~dv~~~vT------ 811 (1290)
T PRK05297 769 VGKDSLSMKTKWQEGGEDKEVTSPLSLIISAFAP-------------------------------VEDVRKTLT------ 811 (1290)
T ss_pred ccchhcCCccccccCCCCCcceeCCccEEEEEEE-------------------------------ecCcccccC------
Confidence 99999998331 1234445544 233221 122233333
Q ss_pred cCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccc
Q psy5570 297 ISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPF 376 (875)
Q Consensus 297 ~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~f 376 (875)
++|
T Consensus 812 -----------------------------------------------------------------------------p~l 814 (1290)
T PRK05297 812 -----------------------------------------------------------------------------PQL 814 (1290)
T ss_pred -----------------------------------------------------------------------------ccc
Confidence 333
Q ss_pred cccCCCCcceeeEEeecCCEEEEecccccccCccccccC-CcccccCC--CCCCCCCcccCchHHHHHHHHHHH-hH---
Q psy5570 377 RRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYS-SPLTSFNH--GIKPDPWFYVDVMGKGKVAFNSNS-LV--- 449 (875)
Q Consensus 377 r~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g-~~~~v~~~--G~~p~~~~~~~~~~~~~~~f~~~~-li--- 449 (875)
|+ +.|+.+.+...+. +. ...-| .+.+++++ +..|+ +++.+.++.+|+.++ ++
T Consensus 815 kk-------------~~g~~l~lI~lg~---~~-~~lGGS~laq~~~~~g~~~P~----v~d~~~lk~~~~~v~~li~~g 873 (1290)
T PRK05297 815 RT-------------DKDTALLLIDLGR---GK-NRLGGSALAQVYNQLGDKAPD----VDDAEDLKGFFNAIQALVAEG 873 (1290)
T ss_pred cc-------------CCCCEEEEEECCC---Cc-ccchHhHHHHHhhhhcCCCCC----CCCHHHHHHHHHHHHHHHHcC
Confidence 21 1123322211100 00 00001 12334455 44787 767999999999999 78
Q ss_pred HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccce
Q psy5570 450 FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVG 528 (875)
Q Consensus 450 ~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G 528 (875)
+|.|+||+|+ ||++||+||| |++++|++ ||+...+ .+.++.||+|++|
T Consensus 874 lv~S~HDvSdGGL~~aLaEMA-fa~~~G~~------Idl~~i~------------------------~~~~~~LFsE~~G 922 (1290)
T PRK05297 874 LLLAYHDRSDGGLLTTLAEMA-FAGHCGLD------IDLDALG------------------------DDALAALFNEELG 922 (1290)
T ss_pred CEEEEEeCCcCHHHHHHHHHH-hhCCCcEE------EEeCCCC------------------------chHHHHHhCCCce
Confidence 8999999999 9999999999 99999999 9876321 0124789999999
Q ss_pred ee--EecCCHHHHHHHHHhhcCCCCCCC--ceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHh
Q psy5570 529 LA--FDEWDLEYYTDIFRNKLKRNPTSV--ECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEK 604 (875)
Q Consensus 529 ~v--v~~~d~~~v~~~f~~~l~r~p~~v--e~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~ 604 (875)
++ |.+++.+.+.++|++ .++ .+..||+++.+ ..++|..+|+.+.+.++++|+++|++||+.+++
T Consensus 923 ~vveV~~~~~~~v~~~l~~------~gi~~~~~~IG~vt~~------~~l~I~~~~~~~~~~~l~eL~~~W~~ts~~~~~ 990 (1290)
T PRK05297 923 AVIQVRAADRDAVEAILAE------HGLSDCVHVIGKPNAG------DRIVITRNGKTVFSESRTELRRWWSETSYQMQR 990 (1290)
T ss_pred EEEEEehHHHHHHHHHHHH------cCCCCCCeEEEEECCC------ceEEEEeCCeeEeeccHHHHHHHHHhhHHHhcc
Confidence 87 555567778888876 577 88999999875 356666688888889999999999999999999
Q ss_pred hhcCccchhhhhhhccccCCCcee----cCCCCcccccccccccccccCCcccCCCCccccccccccccceEEEEEecCC
Q psy5570 605 LQMNARCADEEYNSLVTRIGPKYQ----YQPVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEG 680 (875)
Q Consensus 605 ~~~np~~a~~e~~~~~~~~~p~~~----f~p~~~~~~~~~~~~~~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~pG 680 (875)
+|+||.|+++|++.+.++.+|+++ |+|.. +. + .|+. ...++|||+|++|||
T Consensus 991 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~-------------------~--~~~~---~~~~~pkv~il~~pG 1045 (1290)
T PRK05297 991 LRDNPECADQEFDAILDQADPGLNVKLTFDPNE-DI-------------------A--APFI---ATGARPKVAILREQG 1045 (1290)
T ss_pred cccCchhHHHHHhhhccccCCCcccccccCccc-cc-------------------c--cccc---cCCCCCeEEEEECCC
Confidence 999999999999888888888776 33321 00 0 1111 123679999999999
Q ss_pred CCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCc
Q psy5570 681 INGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDT 760 (875)
Q Consensus 681 ~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~ 760 (875)
+||++||++||+++||++++|+++||..+...|++|++|++||||||||+++++++||.++++|++++++|++|++++|+
T Consensus 1046 ~N~~~e~~~Af~~aG~~~~~v~~~dl~~~~~~l~~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~ 1125 (1290)
T PRK05297 1046 VNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDT 1125 (1290)
T ss_pred CCCHHHHHHHHHHcCCCeEEEEeecCcCCCCChhhCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999988888999999999999999999999999999999999999999999987899
Q ss_pred eEEEEehhHHHHHhcC-CCCCCc--cccccCCCCeEEeccEEec--cC------Cc--eEEEeecce----eecCHHHHH
Q psy5570 761 FSFGVCNGCQLMNLLG-WFSVST--QARQPYIKSRVRCPPLKKE--KS------GV--NITRLSITL----NFSTSDTLS 823 (875)
Q Consensus 761 ~vLGICnGfQiL~elG-lLpg~~--~t~~~n~~~~f~~~~v~v~--~~------~~--~~~r~pi~~----~f~~~~~l~ 823 (875)
|+||||||||+|+++| ++|+.. +++.+|.++||+||||.+. ++ ++ ..+.+||+| +++++++++
T Consensus 1126 ~~LGiCNGfQ~L~~lg~l~p~~~~~p~l~~N~s~rfesr~~~~~v~~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~ 1205 (1290)
T PRK05297 1126 FALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSEQFEARFSLVEVQESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLA 1205 (1290)
T ss_pred eEEEEcHHHHHHHHhCCccCCCCCCCeEeecCCCCeEEeeeEEEECCCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHH
Confidence 9999999999999997 888754 6779999999999999984 22 23 478889999 666777899
Q ss_pred HHHhCCCceee
Q psy5570 824 WLLDSNTNVTV 834 (875)
Q Consensus 824 ~l~~~~~~~~~ 834 (875)
+|++|||-++.
T Consensus 1206 ~l~~~~~ia~~ 1216 (1290)
T PRK05297 1206 ALEAKGLVALR 1216 (1290)
T ss_pred HHHHCCcEEEE
Confidence 99999997643
No 4
>KOG1907|consensus
Probab=100.00 E-value=4.3e-97 Score=845.06 Aligned_cols=615 Identities=36% Similarity=0.510 Sum_probs=517.3
Q ss_pred eeeCCCCcCccccccccccccccCCCC-------CCCcc-------cEEEecccccccCCCCc-ccccccCCCCCCCCCC
Q psy5570 3 LGIHPGAFSRVPYHGAHSSQHIRAPGP-------EQRHA-------PCISHIVTLTSYISIPQ-VFTLARAPGFPTTAHT 67 (875)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~~~~~~~~~~l~~~~P~-~~~~~~~~~~~~~~~~ 67 (875)
+.+++++.+-++. ||++.|.|.+ |||-. +.-+|++...|+|++|+ .|+.++.+..+.++++
T Consensus 570 llv~a~~l~~le~----IckRERcp~svVG~vt~eqR~~l~d~~~~~~aidl~~~~llG~~pK~s~~l~~~~~~lk~l~l 645 (1320)
T KOG1907|consen 570 LLVKAEDLDILES----ICKRERCPVSVVGEVTGEQRVILLDKLAKETAIDLEMRQLLGKPPKMSRKLKRAPRVLKKLEL 645 (1320)
T ss_pred eeeCHHHHHHHHH----HHHhccCCeeEEEEEccCceEEEecCCCCCCccCCchHhhcCCCccccccccccccccccccC
Confidence 5678888888898 9999999997 54322 11278877889999999 9999998888888899
Q ss_pred CCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccC
Q psy5570 68 PPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVD 147 (875)
Q Consensus 68 p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~d 147 (875)
|++..+.+|+++||+.|+|+||+||+.+.||||+|+++|||||||||.|.+|++|+..++...+|.|+|+|++|..+.+|
T Consensus 646 p~~~~l~dAl~RVL~LpsV~SKrfLttkvDRsVtGLiaqqQ~VGPlqvplADvavt~~S~~~~tG~A~amGeqPik~Lid 725 (1320)
T KOG1907|consen 646 PSGLTLRDALERVLRLPSVASKRFLTTKVDRSVTGLIAQQQCVGPLQVPLADVAVTATSHFDTTGEAVAMGEQPIKALID 725 (1320)
T ss_pred CCCChHHHHHHHHhccccccccceeeeeccchhhheeehhhccCcccccceeeeEEEEEEeccccccccccccchHhhhC
Confidence 99889999999999999999999999999999999999999999999999999999999877799999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc----hhcccccccccchHHhhhhcCCccc
Q psy5570 148 PKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG----IYDHLDRSQCLPIRYVDDNNKITED 223 (875)
Q Consensus 148 Py~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~----l~~a~~a~~~~~l~d~~~~lgiP~i 223 (875)
|.++|+++|+||+.||+++.+..+++|++|.||| |++..|| ||+| |++||...++|||.+-
T Consensus 726 a~a~ARm~VaE~l~NLv~a~i~sL~dvK~SgNWM----------~aak~~GEGarlydA-----v~aL~~~L~eLgiAId 790 (1320)
T KOG1907|consen 726 AAASARMCVAEALMNLVAAKITSLKDVKLSGNWM----------WAAKHPGEGARLYDA-----VQALCLGLCELGIAID 790 (1320)
T ss_pred HHHHhHHHHHHHHHHhHhhcccchhheeecccee----------ecccCCCcchHHHHH-----HHHHHHHHHHhceeec
Confidence 9999999999999999999999999999999999 9999997 9999 8888876679999999
Q ss_pred CCCCCCCCCCc--cccccccccc-cccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCC
Q psy5570 224 YPMNPNGSPGK--RERKKKTGRY-LGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSS 300 (875)
Q Consensus 224 ~gkdsm~~~~~--~~~~~~~~~~-~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~s 300 (875)
+|||||||..+ ++.|+.|++| ||+|.. +. +++.++||+|+..+.-|
T Consensus 791 gGKDSlSMa~k~~ge~VkaPgtLvIsayap------------------c~-------------dv~k~vtP~Lk~~~~gs 839 (1320)
T KOG1907|consen 791 GGKDSLSMAMKWDGEVVKAPGTLVISAYAP------------------CP-------------DVTKTVTPDLKANVDGS 839 (1320)
T ss_pred CCccchhhheeeCCeEEecCceEEEEeecc------------------CC-------------CcceeecccccCCCCCC
Confidence 99999999765 5788888888 677765 22 33345678887644333
Q ss_pred CCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccC
Q psy5570 301 VSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHG 380 (875)
Q Consensus 301 k~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G 380 (875)
| .++.. ..+. +++
T Consensus 840 ~---------------~~Ll~----------------------------i~l~--------~~k---------------- 852 (1320)
T KOG1907|consen 840 K---------------TSLLW----------------------------IDLA--------NSK---------------- 852 (1320)
T ss_pred c---------------eEEEE----------------------------EEcc--------ccc----------------
Confidence 2 00000 0111 000
Q ss_pred CCCcceeeEEeecCCEEEEecccccccCccccccCCcccccCC-CC-CCCCCcccCchHHHHHHHHHHH-hH---Hhhhh
Q psy5570 381 TIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSPLTSFNH-GI-KPDPWFYVDVMGKGKVAFNSNS-LV---FFQCA 454 (875)
Q Consensus 381 ~~pls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~~~~v~~~-G~-~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~ 454 (875)
-.++| . .+.++|++ |+ .|| +++...+|.+|+.++ |+ .|+|+
T Consensus 853 ----------------~rLGg-S------------aLaQvy~QiG~d~Pd----l~~~~~lk~~f~~vqqL~~~~ii~Ag 899 (1320)
T KOG1907|consen 853 ----------------MRLGG-S------------ALAQVYSQIGDDCPD----LDNFDELKKFFSVVQQLLNEGIILAG 899 (1320)
T ss_pred ----------------cccch-H------------HHHHHHHHhCCCCCC----ccchHHHHHHHHHHHHHHhcCceeec
Confidence 11111 0 25567888 77 999 999999999999999 77 89999
Q ss_pred cccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceee--E
Q psy5570 455 ESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLA--F 531 (875)
Q Consensus 455 hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~v--v 531 (875)
||+|| ||.+|++||| |+++.|++ ||+..... .....+.||+||+|++ |
T Consensus 900 HD~SDGGLlvt~lEMA-fag~~gi~------idl~~~~~----------------------~~~~~~~LF~EElG~v~ev 950 (1320)
T KOG1907|consen 900 HDISDGGLLVTLLEMA-FAGNVGIE------IDLDSPNQ----------------------NIKLFDILFAEELGAVLEV 950 (1320)
T ss_pred ccccCCchhHHHHHHH-hhcccceE------EecCCccc----------------------cccHHHHHHHHhhCeEEEe
Confidence 99999 9999999999 99999999 99874311 1123367999999999 6
Q ss_pred ecCCHHHHHHHHHhhcCCCCCCCceeecccccCc-ccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHhhhcCcc
Q psy5570 532 DEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSE-HSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNAR 610 (875)
Q Consensus 532 ~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnse-h~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~~~~np~ 610 (875)
...|++.+.++|++ .+|.++.||.+.+- +.. ..+.+..+|..++++++..|+++|+.|||+++++|+||+
T Consensus 951 s~~dl~~v~~~~~~------~gv~~~~ig~~~~~~g~~---~~i~~~~~g~~~~~~~~s~L~~~We~tsy~l~klq~npe 1021 (1320)
T KOG1907|consen 951 SDTDLEKVLEIFSE------AGVKCEYIGKASAVFGQD---AHIKISVNGHLILNEKLSDLREEWELTSYELQKLQDNPE 1021 (1320)
T ss_pred ccccHHHHHHHHHh------cCCcceeeeeeccccCCC---ceEEEecCCeEEecchHHHHHHHHHHhHHHHHHHhhCHH
Confidence 66788999999998 89999999976210 111 468889999999999999999999999999999999999
Q ss_pred chhhhhhhccccCCCcee--cCCCCcccccccccccccccCCcccCCCCccccccccccccceEEEEEecCCCCCHHHHH
Q psy5570 611 CADEEYNSLVTRIGPKYQ--YQPVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMS 688 (875)
Q Consensus 611 ~a~~e~~~~~~~~~p~~~--f~p~~~~~~~~~~~~~~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~pG~n~~~e~~ 688 (875)
|++.|++.+.++.+|+|. |+|.. .||.. ....+..||||||++.|+|+++||+
T Consensus 1022 cae~e~~~i~~~~~p~~~l~~~P~~-----------------~~~~~--------~~l~s~~PkVAilREeGvNg~rEMa 1076 (1320)
T KOG1907|consen 1022 CAEVERECIKDNYDPQYDLYYNPAF-----------------IHNEQ--------LFLSSTAPKVAILREEGVNGDREMA 1076 (1320)
T ss_pred HHHHHHhhcccccCCCCceeeCchh-----------------hhHHH--------HhhhcCCCceEEeeccccccHHHHH
Confidence 999999999888888776 67651 11110 0123467899999999999999999
Q ss_pred HHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehh
Q psy5570 689 AMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 689 ~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
+||..+||++++|+|+||..+...|++|.+|++||||||+|.|++++|||++|+.|++++.++.+|++|+|+|.||||||
T Consensus 1077 ~af~~AgF~~~DVtmtDlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNG 1156 (1320)
T KOG1907|consen 1077 AAFYAAGFETVDVTMTDLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNG 1156 (1320)
T ss_pred HHHHHcCCceeeeeeehhhcCceeHhHhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCc-----cccccCCCCeEEeccEEec--c------CCceEEEeec--ce-----eecCHHHHHHHHhC
Q psy5570 769 CQLMNLLGWFSVST-----QARQPYIKSRVRCPPLKKE--K------SGVNITRLSI--TL-----NFSTSDTLSWLLDS 828 (875)
Q Consensus 769 fQiL~elGlLpg~~-----~t~~~n~~~~f~~~~v~v~--~------~~~~~~r~pi--~~-----~f~~~~~l~~l~~~ 828 (875)
||+|..+|+|+... .+...|.++||+||+..|. + ++++.+.+|+ +| +|-++..++.|+.+
T Consensus 1157 CQlms~Lg~i~p~~~~~p~~~l~~Nes~rfE~r~~~vkI~~~~SIml~gM~gs~LgvwvAHGEGRa~f~~e~~~e~~~~~ 1236 (1320)
T KOG1907|consen 1157 CQLMSRLGWIGPEVGKWPDVFLDHNESGRFECRFGMVKIESNVSIMLSGMAGSVLGVWVAHGEGRATFRSEQNLEHLKKE 1236 (1320)
T ss_pred hHHHHHhcccCccccCCCceeeecccccceeeeEEEEEeCCCchhhhccccCCceeeEEEecccceecCcHHHHHHHhhc
Confidence 99999999998655 2336888999999998873 3 3567666665 55 66666669999998
Q ss_pred CC
Q psy5570 829 NT 830 (875)
Q Consensus 829 ~~ 830 (875)
|+
T Consensus 1237 gl 1238 (1320)
T KOG1907|consen 1237 GL 1238 (1320)
T ss_pred Ce
Confidence 87
No 5
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=100.00 E-value=6.7e-94 Score=878.98 Aligned_cols=566 Identities=17% Similarity=0.128 Sum_probs=453.5
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccE------EEecccccccCCCCc-ccccccCCCC----CC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPC------ISHIVTLTSYISIPQ-VFTLARAPGF----PT 63 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~l~~~~P~-~~~~~~~~~~----~~ 63 (875)
|+++|.|++.+++.. +|+++++|+. +++++.+ ++|||...|++++|+ .++.++.++. ..
T Consensus 548 mlv~V~pe~~e~f~~----i~~~~~l~~~vIG~vt~~~~l~v~~~g~~v~dL~~~fL~~~gp~~~~~~~~~~~~~~~~~~ 623 (1239)
T TIGR01857 548 MAVVVSPEDVDAFLA----YCNEENLEATVVATVTEKPRLVMNWNGKTIVDLSRRFLDTNGVRQVIDAKVVDKDVKLPEE 623 (1239)
T ss_pred EEEEEChhhHHHHHH----HHHHCCCCEEEEEEECCCCeEEEEeCCceEEEeeHHHHcCCCCCCeeeccccccccccccc
Confidence 789999999999999 9999999985 3345554 399988888888888 8888875331 11
Q ss_pred CCCCCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEec---CCcEEEEEEecCC
Q psy5570 64 TAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVH---NDLRGAATSIGEQ 140 (875)
Q Consensus 64 ~~~~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~---~~~~g~ams~G~~ 140 (875)
+... ...+++++|+++|++||||||+||+|||||+|||+||++||+||||.||+|+||++++. ++++|+|||+|+|
T Consensus 624 ~~~~-~~~~~~~~l~~vL~~pnVaSK~~l~~qyD~~V~g~TV~~P~gG~~q~~~~DaaV~~~~~~~g~t~~g~ams~g~n 702 (1239)
T TIGR01857 624 RQKT-SAETLEEDWLKVLSDLNVASQKGLQERFDSSVGAGTVLMPLGGKYQLTPTEASVAKLPVLGGETHTASAIAWGFN 702 (1239)
T ss_pred cCCC-CCcCHHHHHHHHhcCCcccchhhhhhhcCcccCCCeeeCCCCCCcCCCCcceEEEEeeccCCCCCeEEEEEecCC
Confidence 2222 23589999999999999999999999999999999999999999999999999999874 4789999999999
Q ss_pred CcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcchhcccccccccchHHhhhhcCC
Q psy5570 141 PIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQCLPIRYVDDNNKI 220 (875)
Q Consensus 141 p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~l~~a~~a~~~~~l~d~~~~lgi 220 (875)
|+++.+|||+||++||+||+|||||+|+ ++.+|.|+|+.||+++-.++.+| |++.++ +.|++++|++||+
T Consensus 703 P~~~~~dPy~ga~~AV~EA~rNlva~G~-~~~~i~Lnf~~~F~k~p~~p~~w-------~~~~~a--l~ga~~a~~~lgi 772 (1239)
T TIGR01857 703 PYIAEWSPYHGAAYAVIESLAKLVAAGA-DYKKARLSFQEYFEKLDKDAERW-------GKPFAA--LLGAIKAQIDLGL 772 (1239)
T ss_pred CceeccCHHHHHHHHHHHHHhhhheeCC-cHHHEEEecccccccCCCChhHH-------hHHHHH--HHHHHHHHHHhCC
Confidence 9999999999999999999999999998 68889999988888877776666 455555 9999999999999
Q ss_pred cccCCCCCCCCCCccccccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCC
Q psy5570 221 TEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSS 300 (875)
Q Consensus 221 P~i~gkdsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~s 300 (875)
|+|||||||||++. .+.+|||+++... |+. ++
T Consensus 773 pvigGKdSmsn~~~--~v~iPPTlvi~av----------------------------gv~---Dv--------------- 804 (1239)
T TIGR01857 773 PAIGGKDSMSGTFE--ELTVPPTLISFAV----------------------------TTA---NS--------------- 804 (1239)
T ss_pred CCCcceecCccccC--CeeeCCccEEEEE----------------------------ecc---CH---------------
Confidence 99999999999653 3666777642111 100 11
Q ss_pred CCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccC
Q psy5570 301 VSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHG 380 (875)
Q Consensus 301 k~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G 380 (875)
++..+++||+
T Consensus 805 --------------------------------------------------------------------~~~vt~~~K~-- 814 (1239)
T TIGR01857 805 --------------------------------------------------------------------RRVISPEFKA-- 814 (1239)
T ss_pred --------------------------------------------------------------------hhccChhhcc--
Confidence 1234555652
Q ss_pred CCCcceeeEEeecCCEEEEecccccccCccccccCCcccccCCCCCCCCCcccCchHHHHHHHHHHH-hH---Hhhhhcc
Q psy5570 381 TIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAES 456 (875)
Q Consensus 381 ~~pls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~~~~v~~~G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~hd 456 (875)
.||.+.+.+... .....|| .+.+|.+|+.++ +| +|+|+||
T Consensus 815 ------------~G~~i~lig~~~-----------------~~~g~~d-------~~~~k~~~~~v~~li~~g~v~s~hD 858 (1239)
T TIGR01857 815 ------------AGENIYLIPGQA-----------------LEDGTID-------FDLLKENFAQIEELIADHKVVSASA 858 (1239)
T ss_pred ------------CCCEEEEEcCCc-----------------ccCCCCC-------HHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 366654433221 1111455 788999999999 88 8999999
Q ss_pred cCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceeeEecCC
Q psy5570 457 FYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEWD 535 (875)
Q Consensus 457 vsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~vv~~~d 535 (875)
+|| ||++||+||| |++++|++ ||+.. ...||+|++|++|.+..
T Consensus 859 vS~GGL~vaLaEMa-f~g~~G~~------i~l~~-----------------------------~~~LFsE~~gr~vvev~ 902 (1239)
T TIGR01857 859 VKYGGVAESLAKMT-FGNRIGAE------LNNPE-----------------------------LEDLFTAQYGSFIFESP 902 (1239)
T ss_pred CCcChHHHHHHHHH-hcCCceEE------EecCc-----------------------------HHHhhCCCCceEEEEEC
Confidence 999 9999999999 99999999 88641 15799999998855544
Q ss_pred HHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHh--hhcCccchh
Q psy5570 536 LEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEK--LQMNARCAD 613 (875)
Q Consensus 536 ~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~--~~~np~~a~ 613 (875)
.+ + .++.+..||+++++ ..+.++|..+ ++++|+++|++|++.+++ .++++.|++
T Consensus 903 ~~-----~--------~~~~~~~IG~v~~~--------~~l~~~~~~~---~~~~L~~~w~~~l~~~~~~~~~~~~~~~~ 958 (1239)
T TIGR01857 903 EE-----L--------SIANVEKIGQTTAD--------FVLKVNGEKL---DLEELESAWEGKLEEVFPSKFEDKKETVE 958 (1239)
T ss_pred hh-----h--------cCCcceEEEEECCc--------cEEEECCEEe---eHHHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 33 1 14568899999865 4466777544 699999999999999853 345554441
Q ss_pred hhhhhccccCCCceecCCCCcccccccccccccccCCcccCCCCccccccccccccceEEEEEecCCCCCHHHHHHHHHH
Q psy5570 614 EEYNSLVTRIGPKYQYQPVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSAMAQV 693 (875)
Q Consensus 614 ~e~~~~~~~~~p~~~f~p~~~~~~~~~~~~~~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~pG~n~~~e~~~A~~~ 693 (875)
. . ..++|.. .+. .....++|||+|++|||+||++||++||++
T Consensus 959 ~--------~---~~~~~~~-----~~~----------------------~~~~~~kpkvaIl~~pGtNce~d~a~Af~~ 1000 (1239)
T TIGR01857 959 V--------P---AVASEKK-----VIK----------------------AKEKVEKPRVVIPVFPGTNSEYDSAKAFEK 1000 (1239)
T ss_pred c--------c---ccCCccc-----eec----------------------cccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 0 0 0022210 000 012347899999999999999999999999
Q ss_pred cCCeeEEEEeecccccc---------cCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEE
Q psy5570 694 CGFEVWDITVQDLLENK---------ITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFG 764 (875)
Q Consensus 694 aG~~v~~V~~~dl~~~~---------~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLG 764 (875)
+||++++||++||..++ ..|++||+|++||||||||++++++||++++++|++++++|++|++ +|+|+||
T Consensus 1001 aG~~~~~v~~~dl~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~-~d~~~LG 1079 (1239)
T TIGR01857 1001 EGAEVNLVIFRNLNEEALVESVETMVDEIDKSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLA-RDGLILG 1079 (1239)
T ss_pred cCCceEEEEEecCcccccccchhhhhcccccCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHh-CCCcEEE
Confidence 99999999999988765 5789999999999999999999999999999999999999999999 5999999
Q ss_pred EehhHHHHHhcCCCCCCc--------cccccCCCCeEEeccEEec--c------CCc---eEEEeecce----eecCHHH
Q psy5570 765 VCNGCQLMNLLGWFSVST--------QARQPYIKSRVRCPPLKKE--K------SGV---NITRLSITL----NFSTSDT 821 (875)
Q Consensus 765 ICnGfQiL~elGlLpg~~--------~t~~~n~~~~f~~~~v~v~--~------~~~---~~~r~pi~~----~f~~~~~ 821 (875)
||||||+|+++||||++. +++.+|.++||+||||.+. + +++ .++.+||+| ||+++++
T Consensus 1080 ICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~N~s~rf~~r~v~~~v~~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~ 1159 (1239)
T TIGR01857 1080 ICNGFQALVKSGLLPYGNIEAANETSPTLTYNDINRHVSKIVRTRIASTNSPWLSGVSVGDIHAIPVSHGEGRFVASDEV 1159 (1239)
T ss_pred echHHHHHHHcCCCcCccccccccCCceeeecCCCCeEEeeeEEEECCCCChhHhcCCCCCEEEEEeEcCCcceecCHHH
Confidence 999999999999999743 4779999999999999984 2 123 479999999 7777777
Q ss_pred HHHHHhCCCceee
Q psy5570 822 LSWLLDSNTNVTV 834 (875)
Q Consensus 822 l~~l~~~~~~~~~ 834 (875)
|++|++|||-++.
T Consensus 1160 l~~l~~~~qva~r 1172 (1239)
T TIGR01857 1160 LAELRENGQIATQ 1172 (1239)
T ss_pred HHHHHHCCcEEEE
Confidence 9999999997754
No 6
>PHA03366 FGAM-synthase; Provisional
Probab=100.00 E-value=2.1e-90 Score=860.81 Aligned_cols=607 Identities=18% Similarity=0.228 Sum_probs=474.3
Q ss_pred eeeeCCC--------CcCccccccccccccccCCCC------CCCcccEE--------EecccccccCCCCc-c------
Q psy5570 2 YLGIHPG--------AFSRVPYHGAHSSQHIRAPGP------EQRHAPCI--------SHIVTLTSYISIPQ-V------ 52 (875)
Q Consensus 2 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--------~~~~~~~l~~~~P~-~------ 52 (875)
.|.|.++ ..+++.. +|+++|.|+. +++++.++ +|+|-..++++.|+ .
T Consensus 491 ~l~i~~~~~~~~~~~~l~~l~~----ic~rercp~~vvG~~t~~~~~~~~d~~~~~~p~dl~~~~~~~~~~k~~~~~~~~ 566 (1304)
T PHA03366 491 FLVIKNTHEGGEGVTPLDALKR----ACRLAGCPVHILGRTVPLPGIHFVNDLGNPVYGELRDDQFKPTFPLQPSRPLSP 566 (1304)
T ss_pred EEEEcCcccccccccHHHHHHH----HHHHcCCCEEEEEEEecCCcEEEEcCCCCCCCcCcchhhhcccCCCCccccccc
Confidence 5778888 8889999 9999999996 66676665 56655667666665 4
Q ss_pred ----cccccCCCCCCCCCCCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEec-
Q psy5570 53 ----FTLARAPGFPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVH- 127 (875)
Q Consensus 53 ----~~~~~~~~~~~~~~~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~- 127 (875)
++..+..+...+++++ ..++++++++||+|||||||+||++||||+|+|+||+||+|||||+|++|+||+++++
T Consensus 567 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~vL~~P~VaSK~~i~~~~Dr~V~G~ta~qqgVGP~q~PvaD~aVv~~~~~ 645 (1304)
T PHA03366 567 VSATSEDTRPSPQDESIDWA-LFNLNSTLLQILSHPTVGSKEYIVRHIDRCGNGRVAQQPGVGPLDLPVSDYSIVVHSSV 645 (1304)
T ss_pred cccccccccccCCCCCcCcc-cCCHHHHHHHHHcCCcccchhhhheecccccCCeEEeCCCcCcccCccCCEEEEEEecc
Confidence 2555555555666666 4689999999999999999999999999999999999999999999999999999953
Q ss_pred ----------------------------------------CCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccC
Q psy5570 128 ----------------------------------------NDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAK 167 (875)
Q Consensus 128 ----------------------------------------~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g 167 (875)
.+.+|+|||+|+||+++.+|||+||++||+||+|||+++|
T Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~A~siGe~p~~~~lDP~~Ga~~AVaEAl~NL~aa~ 725 (1304)
T PHA03366 646 KTRRAIETPSSTEDLTYQEADELINSPLTWFDPDDESVLHPAVPGTCSALGEQGYKVQLDPILGAKYAIVEALTNLMLAP 725 (1304)
T ss_pred cccccccccccccccccchhhhhhccccccccccccccccCCCCEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHhhcC
Confidence 2678999999999999999999999999999999999999
Q ss_pred CcccccceeccccccccccCCcccccccCcc-hhcccccccccchHHhhhhcCCcccCCCCCCCCCC--ccccccccccc
Q psy5570 168 ISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPG--KRERKKKTGRY 244 (875)
Q Consensus 168 ~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~~~--~~~~~~~~~~~ 244 (875)
+.++++|++|+||+ |+. +|+ +|++.++ |+||+|+|++||||+++|||||++++ .++.++.|+++
T Consensus 726 ~~~L~~i~lslNf~----------wP~-~p~~~a~L~ea--v~ai~e~C~~LgIpIv~G~~S~yne~~~~~~~i~~pptI 792 (1304)
T PHA03366 726 VANLEDITITLSVT----------WPP-TDQAASELYRA--LAACKEFCRELGVNFTFTSASSSPRQDQPPQPGPLFNTI 792 (1304)
T ss_pred CccchheEEEEEec----------CCC-CcchHHHHHHH--HHHHHHHHHHcCCCEeeeecccccccCCCCccccCCCeE
Confidence 99999999999999 876 576 7777777 99999999999999999999999852 23444444444
Q ss_pred -cccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCCcceEEEEEEeeCCcccccccc
Q psy5570 245 -LGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQ 323 (875)
Q Consensus 245 -~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~q 323 (875)
+++++ ..++++..
T Consensus 793 visg~~-------------------------------~~~dv~k~----------------------------------- 806 (1304)
T PHA03366 793 VFTASA-------------------------------PVPSSTPR----------------------------------- 806 (1304)
T ss_pred EEEEEE-------------------------------EccCcccc-----------------------------------
Confidence 22222 11222222
Q ss_pred cccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEeccc
Q psy5570 324 RSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAE 403 (875)
Q Consensus 324 rS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~ 403 (875)
.+++||+ .||.+.+.+..
T Consensus 807 ------------------------------------------------vTp~lk~--------------~G~~L~lIg~~ 824 (1304)
T PHA03366 807 ------------------------------------------------LTPDLKK--------------PGSALVHLSIS 824 (1304)
T ss_pred ------------------------------------------------cCcccCC--------------CCCEEEEEeCC
Confidence 3333332 23332222111
Q ss_pred ccccCccccccC-CcccccCC--CCCCCCCcccCchHHHHHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccC
Q psy5570 404 SFYDRMTECVYS-SPLTSFNH--GIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNH 475 (875)
Q Consensus 404 sv~kg~p~~~~g-~~~~v~~~--G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~ 475 (875)
. + .+.-| .+.+++++ |..|+ + +++.+|.+|+.++ +| +|.|+||+|| ||++||+||| |++++
T Consensus 825 ~---~--~~LgGS~laq~~~~~g~~~P~----v-d~~~lk~~f~~v~~Li~~glI~A~HDVSdGGL~~ALaEMA-fag~~ 893 (1304)
T PHA03366 825 P---E--YTLAGSVFEQIFGLKSGTLPD----I-SPSYLKNLFRAVQHLISEGLVVSGHDVSDGGLIACLAEMA-LAGGR 893 (1304)
T ss_pred C---C--CCcchhHHHHhhccccCCCCC----C-CHHHHHHHHHHHHHHHHcCCeEEEEECCcCHHHHHHHHHH-HhCCC
Confidence 0 0 11111 23344555 44888 6 4999999999999 88 8999999999 9999999999 99999
Q ss_pred CCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceee--EecCCHHHHHHHHHhhcCCCCCC
Q psy5570 476 GIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLA--FDEWDLEYYTDIFRNKLKRNPTS 553 (875)
Q Consensus 476 G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~v--v~~~d~~~v~~~f~~~l~r~p~~ 553 (875)
|++ ||+... .+++..||+|++|++ |.+++.+.+.+++++ .+
T Consensus 894 G~~------Idl~~~-------------------------~d~~~~LFsE~~G~VveV~~~~~~~v~~~l~~------~g 936 (1304)
T PHA03366 894 GVT------ITVPAG-------------------------EDPLQFLFSETPGVVIEVPPSHLSAVLTRLRS------RN 936 (1304)
T ss_pred cEE------EEeCCC-------------------------CCHHHHHhCCCCeEEEEEchhHHHHHHHHHHH------CC
Confidence 999 987521 123478999999966 444567778888887 78
Q ss_pred CceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHhhhcCccchhhhhhhccc---cC-CCceec
Q psy5570 554 VECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVT---RI-GPKYQY 629 (875)
Q Consensus 554 ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~~~~np~~a~~e~~~~~~---~~-~p~~~f 629 (875)
+++..||+++++..+ ..++|..+|+.+++.++++|+++|++||+++++.+.++.| ++|+..... .. .+++.
T Consensus 937 i~~~vIG~vt~~~~~---~~l~I~~~~~~l~~~~l~eL~~~W~~ts~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~- 1011 (1304)
T PHA03366 937 IICYPIGTVGPSGPS---NTFSVSHNGTVLFRESLSSLRSTWRSFSDEQFELLRPDLT-EESMYRKDYGNNEVDLGPLE- 1011 (1304)
T ss_pred CCeEEEEEEcCCCce---EEEEEEECCEEEEecCHHHHHHHHHHHHHHHHHHhcCChh-hhHHHHhhcccccccccCcc-
Confidence 899999999875210 1277777888888899999999999999999977666665 455433211 00 01111
Q ss_pred CCCCcccccccccccccccCCcccCCCCccccccccccccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeeccccc
Q psy5570 630 QPVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLEN 709 (875)
Q Consensus 630 ~p~~~~~~~~~~~~~~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~ 709 (875)
. .+. .. +. +.+ ..+.++|||+|++|||+||++||++||+++||++++|+++||..+
T Consensus 1012 -~-------~~~----------~~-~~--~~~---~~~~~~prVaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dL~~~ 1067 (1304)
T PHA03366 1012 -E-------GLT----------TS-PL--RLY---TCPDKRHRVAVLLLPGCPGPHALLAAFTNAGFDPYPVSIEELKDG 1067 (1304)
T ss_pred -c-------ccc----------CC-ch--hcc---cCCCCCCeEEEEECCCCCCHHHHHHHHHHcCCceEEEEeecCCCC
Confidence 0 000 00 00 001 113578999999999999999999999999999999999999988
Q ss_pred ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEeh-hHHHHHhcCCCCC--------
Q psy5570 710 KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCN-GCQLMNLLGWFSV-------- 780 (875)
Q Consensus 710 ~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICn-GfQiL~elGlLpg-------- 780 (875)
.. |++|++||+||||||||+++++++||+++++|++++++|++|++|+|+|+||||| |||+|+++|+||+
T Consensus 1068 ~~-l~~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~ 1146 (1304)
T PHA03366 1068 TF-LDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPG 1146 (1304)
T ss_pred Cc-cccceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCccccccc
Confidence 87 9999999999999999999999999999999999999999999888999999999 9999999999953
Q ss_pred ------CccccccCCCCeEEeccEEec--c-C------CceEEEeecce-------eecCHHHHHHHHhCCCce
Q psy5570 781 ------STQARQPYIKSRVRCPPLKKE--K-S------GVNITRLSITL-------NFSTSDTLSWLLDSNTNV 832 (875)
Q Consensus 781 ------~~~t~~~n~~~~f~~~~v~v~--~-~------~~~~~r~pi~~-------~f~~~~~l~~l~~~~~~~ 832 (875)
...++.+|.++||+|||+.+. + + ++..+++|+-. .|.+++.+++|+++||-.
T Consensus 1147 g~i~~~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~~Gs~lP~w~~g~~~~~~~~~~~~~~~l~~~~~ia 1220 (1304)
T PHA03366 1147 TETEEQWPITLEPNASGLYESRWLNFYIPETTKSVALRPLRGSVLPCWAQGTHLGFRYPNDGMEYILRNSGQIA 1220 (1304)
T ss_pred cccccCCCCeEeeeCCCCeEeeceEEEeCCCCCCccccccCCCCCCEEeCCCccccccCCHHHHHHHHhCCcEE
Confidence 125679999999999999983 2 2 35678889833 378888899999998754
No 7
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=100.00 E-value=8.2e-87 Score=826.19 Aligned_cols=608 Identities=18% Similarity=0.188 Sum_probs=465.7
Q ss_pred CeeeeCC----------CCcCccccccccccccccCCCC------CCCcccEE----------EecccccccCCCCc-cc
Q psy5570 1 MYLGIHP----------GAFSRVPYHGAHSSQHIRAPGP------EQRHAPCI----------SHIVTLTSYISIPQ-VF 53 (875)
Q Consensus 1 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~----------~~~~~~~l~~~~P~-~~ 53 (875)
++|+|.| +.++++.. +|+++|.|+. +++++.++ +||+-..+++++|+ .+
T Consensus 399 ~~LaV~~~~~~~~~~~~~~l~~~~~----ic~re~cp~~vlG~~t~~~~l~v~~~~~~~~~~~vd~~~~~~~~~~P~~~~ 474 (1202)
T TIGR01739 399 VFLTVKNTPHNTGTEGVTPLERLKT----ACRMFGCPVKVLGKLVPLPGLHIVSDLFNPVPTYPTFDFTSFTPTSPLLPL 474 (1202)
T ss_pred EEEEECCcccccccccchHHHHHHH----HHHHCCCCEEEEEEEeCCCcEEEEeCCCCCCCCCccchhhhccCCCCCccc
Confidence 3588999 78889999 9999999996 55666555 44544557899999 77
Q ss_pred c----cccCCC--CCCCCCCCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEE--
Q psy5570 54 T----LARAPG--FPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVAL-- 125 (875)
Q Consensus 54 ~----~~~~~~--~~~~~~~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~-- 125 (875)
+ ..|..+ ...+++++ ..+++++++++|+|||||||+|||+||||+|||+||++|+|||||.|++||+|+++
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~vL~~P~V~SK~~i~~q~Dr~V~G~tv~~pgVGP~d~PvaD~aVv~~~~ 553 (1202)
T TIGR01739 475 GGPEPVSRTRPMFLDESLNWQ-TLNLRSTILKILSHPTVGSKEFIVRHIDRCGNGRVAQQQGVGPLDLPVSDYSLVLHNL 553 (1202)
T ss_pred ccccccccccccccCCCCCCC-ccCHHHHHHHHhcCCcccchhhHhhhcCceeCCceeccCCcCCCCCCCCCeEEEEecc
Confidence 4 433222 12333443 46899999999999999999999999999999999999999999999999999998
Q ss_pred e---c-------------------------------CCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCccc
Q psy5570 126 V---H-------------------------------NDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDL 171 (875)
Q Consensus 126 ~---~-------------------------------~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l 171 (875)
. . ++.+|+|||+|+||+++.+|||+||++||+||+|||+|+|++++
T Consensus 554 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~G~a~a~Ge~p~~~~~DP~~ga~~AV~Ea~~Nlaaa~~~~l 633 (1202)
T TIGR01739 554 SRPTDTTEVTYSENAMDLILDPDSWLYSWENEVLENPALSCVCSALGEQTYKVQADPKRGATYAITEALLNLSLSPWNTL 633 (1202)
T ss_pred cccccccccccccccccccccccccccccccccccCCCceEEEEecCCCceEEEcCHHHHHHHHHHHHHHHHHhCCcccc
Confidence 3 0 13489999999999999999999999999999999999998899
Q ss_pred ccceeccccccccccCCcccccccCcchhcccccccccchHHhhhhcCCcccCCCCCCCCCCcccccccc-ccc-ccccc
Q psy5570 172 KFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPGKRERKKKT-GRY-LGKYG 249 (875)
Q Consensus 172 ~~i~ls~n~~~~~~~~~~~~w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~~~~~~~~~~~-~~~-~~~~~ 249 (875)
+.+.+++||+ |+...+.++++.++ +++|+|+|++||||+++||||+++. .+.+..| +++ +++++
T Consensus 634 ~pi~lt~n~~----------~P~~~~~~~~L~~a--v~ai~e~C~~Lgipiv~G~~S~s~~--~~~v~~Ptptivisa~a 699 (1202)
T TIGR01739 634 EDVIITLSVT----------WSPTDHVYSLLKDA--LRACKDFCEELGVSFTVTSAASSPT--QDSGSAPFMSIVFSASC 699 (1202)
T ss_pred CCcEEEEEec----------CCCCCchHHHHHHH--HHHHHHHHHHcCCcEEeeeccccCC--CCCccCCCCeEEEEEEE
Confidence 9999999999 87543337777777 9999999999999999999999751 1112222 222 11111
Q ss_pred ccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCCcceEEEEEEeeCCcccccccccccccc
Q psy5570 250 HGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMG 329 (875)
Q Consensus 250 ~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~ 329 (875)
..++++..
T Consensus 700 -------------------------------~v~dv~k~----------------------------------------- 707 (1202)
T TIGR01739 700 -------------------------------PVLLSAKK----------------------------------------- 707 (1202)
T ss_pred -------------------------------EecCHHhC-----------------------------------------
Confidence 11122222
Q ss_pred cchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCc
Q psy5570 330 LGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRM 409 (875)
Q Consensus 330 Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~ 409 (875)
.+++|| +.||.+.+.+... ..++
T Consensus 708 ------------------------------------------vTp~lk--------------~~G~~L~LIg~t~-~~~L 730 (1202)
T TIGR01739 708 ------------------------------------------ITPDLK--------------SHGSHLIWLSLHP-SYTL 730 (1202)
T ss_pred ------------------------------------------cCcccC--------------CCCCEEEEEcCCC-CCCc
Confidence 333443 2244433322110 0011
Q ss_pred cccccC-CcccccCC--CCCCCCCcccCchHHHHHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCC
Q psy5570 410 TECVYS-SPLTSFNH--GIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDP 481 (875)
Q Consensus 410 p~~~~g-~~~~v~~~--G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~ 481 (875)
-| .+.+++++ +..|+ + +++.++.+|+.++ ++ +|.|+||+|| ||++||+||| |++++|++
T Consensus 731 ----gGS~laq~~~~~~~~~P~----v-d~~~lk~~~~~v~~li~~glI~S~HDvSdGGL~~aLaEMA-~ag~~G~~--- 797 (1202)
T TIGR01739 731 ----AGSIFEQILGLSFIRLPA----L-SPVSLKKLLSALQTLVKEGVIVSGHDVSDGGLVACVAEMA-LSGGKGVR--- 797 (1202)
T ss_pred ----hHhHHHHhhccccCCCCC----C-CHHHHHHHHHHHHHHHhcCCEEEEEECCcCHHHHHHHHHH-HhCCCcEE---
Confidence 11 12334555 44787 6 4899999999999 77 8999999999 9999999999 99999999
Q ss_pred ceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceee--EecCCHHHHHHHHHhhcCCCCCCCceeec
Q psy5570 482 WFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLA--FDEWDLEYYTDIFRNKLKRNPTSVECFDL 559 (875)
Q Consensus 482 ~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~v--v~~~d~~~v~~~f~~~l~r~p~~ve~~~I 559 (875)
||+... .+++..||||++|++ |.+++.+.+.+++++ .++++..|
T Consensus 798 ---Idl~~~-------------------------~~p~~~LFSEs~G~VieV~~~~~~~v~~~l~~------~gi~~~vI 843 (1202)
T TIGR01739 798 ---ITLPHG-------------------------TDPLEFLCSETPGVVIEVDPSSMYAVLQFLRS------EGLVFQVI 843 (1202)
T ss_pred ---EEeCCC-------------------------CCHHHHHhCCCCcEEEEEchhHHHHHHHHHHH------CCCCeEEE
Confidence 987521 123478999999976 455667778888887 68889999
Q ss_pred ccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHhhhcCccchhhhhhhccccCCCcee---cCCCCccc
Q psy5570 560 AQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ---YQPVRDDI 636 (875)
Q Consensus 560 Gqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~~~~np~~a~~e~~~~~~~~~p~~~---f~p~~~~~ 636 (875)
|++++++++ ..++|..+|+.+.+.++++|+++|++++++++++|++..+.+ . .+..+++++ |...
T Consensus 844 G~vt~~~~~---~~l~I~~~~~~l~~~~l~~L~~~W~~ts~~~~~~~~~~~~~~----~-~~~~~~g~~~~~~~~~---- 911 (1202)
T TIGR01739 844 GRVGESGPS---PTFSVVHNSTVLFQEPLSLLQGTWRSFSDEENTLLCPNLEPR----E-MHVLDYGYNEMDFGGV---- 911 (1202)
T ss_pred EEECCCCCC---cEEEEEECCEEEEEecHHHHHHHHHHHHHHHHhhhcchhhhh----h-hcccCcCcchhhcccc----
Confidence 999863222 357777799998899999999999999999999875443332 2 222333332 1000
Q ss_pred ccccccccccccCCcccCCCCccccccccccccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCc
Q psy5570 637 VGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRF 716 (875)
Q Consensus 637 ~~~~~~~~~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~ 716 (875)
..+ +..+++.....+..+|||+|++|||+||++||++||+++||++++|+++||..+. .+++|
T Consensus 912 -~~~---------------~~~~~~~~~~~~~~~p~VaIl~~pG~N~~~e~~~Af~~aGf~~~~v~~~dl~~~~-~l~~f 974 (1202)
T TIGR01739 912 -PKG---------------LPLSPLRFFTCPDPRHQVAVLLLPGQSVPHGLLAALTNAGFDPRIVSITELKKTD-FLDTF 974 (1202)
T ss_pred -ccc---------------CcccccccccCCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCceEEEEeccCCCCC-chhhe
Confidence 000 0111111112334689999999999999999999999999999999999999887 58999
Q ss_pred cEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEeh-hHHHHHhcCCCCCCc-------------
Q psy5570 717 KGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCN-GCQLMNLLGWFSVST------------- 782 (875)
Q Consensus 717 d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICn-GfQiL~elGlLpg~~------------- 782 (875)
++||+||||||||+++++++||+++++|++++++|++|++|+|+|+||||| |||+|+++|+||+..
T Consensus 975 ~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~~~ 1054 (1202)
T TIGR01739 975 SGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEVQE 1054 (1202)
T ss_pred EEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccccC
Confidence 999999999999999999999999999999999999999888999999999 999999999997533
Q ss_pred -cccccCCCCeEEeccEEec--c-C------CceEEEeecc-e------eecCHHHHHHHHhCCCce
Q psy5570 783 -QARQPYIKSRVRCPPLKKE--K-S------GVNITRLSIT-L------NFSTSDTLSWLLDSNTNV 832 (875)
Q Consensus 783 -~t~~~n~~~~f~~~~v~v~--~-~------~~~~~r~pi~-~------~f~~~~~l~~l~~~~~~~ 832 (875)
.++.+|.++||+|||+.+. + + ++..+++|+. | +|.+++.+++|+++||-.
T Consensus 1055 ~~~l~~N~s~~fesr~~~v~i~~~s~si~~~~~~g~~lp~wv~g~~~g~~~~~~~~~~~l~~~g~va 1121 (1202)
T TIGR01739 1055 PPRLEKNASGLYESRWLNFYIPETTKSVFLRPLRGSVLPCWAQGTHLGLYHPDDGVEEELENSGQIA 1121 (1202)
T ss_pred CceeeecCCCCeEEeeeEEEeCCCCCChhhhhcCCCEeccceEeccCCcEECCHHHHHHHHhCCeEE
Confidence 3457799999999999983 2 2 3466777777 4 888888899999999854
No 8
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.5e-53 Score=497.06 Aligned_cols=389 Identities=19% Similarity=0.182 Sum_probs=285.5
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccEE------EecccccccCCCCc-ccccccCCCC-CCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPCI------SHIVTLTSYISIPQ-VFTLARAPGF-PTTAH 66 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------~~~~~~~l~~~~P~-~~~~~~~~~~-~~~~~ 66 (875)
|+|++.|++++++.+ +|+||++|+. ++..+.+. +|||...|.+++|+ +|+.+.+... ..+..
T Consensus 327 Mllvv~p~~~e~~~~----i~~k~~l~~aVVG~vT~~~~~~~~~~ge~v~dlP~~~L~~~aP~~~r~~~~~~~~~~~~~~ 402 (743)
T COG0046 327 MLLVVAPEDVEEFLE----ICEKERLPAAVVGEVTDEPRLVVDWKGEPVVDLPIDVLAGKAPKYDRPVKEPKKEEAGDVP 402 (743)
T ss_pred eEEEEccccHHHHHH----HHHHcCCCeEEEEEEecCceEEEEECCCEEEeccHHHHcCCCCeeeccccccccccccccC
Confidence 899999999999999 9999999997 55555553 99988889999999 9997765332 12223
Q ss_pred CCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCC--cEEEEEEecCCCccc
Q psy5570 67 TPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHND--LRGAATSIGEQPIKG 144 (875)
Q Consensus 67 ~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~--~~g~ams~G~~p~~~ 144 (875)
.|...+++++++++|++||||||+|||+||||+|||+||+.| || ++|++|+|++..+ .+|+|||+|+||+++
T Consensus 403 ~~~~~~l~~a~~~vL~~p~vask~~l~~qyD~~V~~~Tv~~p--G~----~~DaaV~r~~~~~~~~~g~A~t~~~np~~~ 476 (743)
T COG0046 403 EPEEPDLEEALLKVLSSPNVASKEWLYEQYDRSVGGNTVVDP--GP----VADAAVLRISEDSGTGKGLAMTTGENPRYA 476 (743)
T ss_pred CCCcccHHHHHHHHhcCcchhhhcceeeecceeeccceeecC--CC----CcceEEEEecccCCCcceEEEEcCCCCcce
Confidence 344457999999999999999999999999999999999999 76 8999999998432 348999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchHHhhhhcCCccc
Q psy5570 145 LVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITED 223 (875)
Q Consensus 145 ~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i 223 (875)
++|||+||++||+||+|||+|+|+.++. ++.|+||. +..+|+ +||++++ ++|+.|+|++||+|++
T Consensus 477 ~ldpy~Ga~~aVaEa~rNl~a~Ga~pla-~~d~lnfg-----------~pe~pE~~~q~~~a--~~g~~eac~~l~~pvv 542 (743)
T COG0046 477 LLDPYAGAKLAVAEALRNLAATGAKPLA-LTDNLNFG-----------NPEKPEVMGQFVAA--VAGLAEACRALGIPVV 542 (743)
T ss_pred EEChhHHHHHHHHHHHHHHHhhCCcchh-hhhhhccC-----------CCCChhhhhHHHHH--HHHHHHHHHHhCCCcc
Confidence 9999999999999999999999996555 66665553 223334 9999888 9999999999999999
Q ss_pred CCCCCCCCCCcccccccccccc-ccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCC
Q psy5570 224 YPMNPNGSPGKRERKKKTGRYL-GKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVS 302 (875)
Q Consensus 224 ~gkdsm~~~~~~~~~~~~~~~~-~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~ 302 (875)
+|||||||.+++. .+|+|++ .. +|.+ .++
T Consensus 543 ~GnvSlynet~~~--~i~PTpvi~~-----------------------------vg~v--~dv----------------- 572 (743)
T COG0046 543 GGNVSLYNETNGQ--PIPPTPVIGA-----------------------------VGLV--EDV----------------- 572 (743)
T ss_pred cceeeeeeccCCc--ccCCcceEEE-----------------------------EEEe--ech-----------------
Confidence 9999999977665 3344441 11 1111 111
Q ss_pred cceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccCCC
Q psy5570 303 RKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTI 382 (875)
Q Consensus 303 ~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G~~ 382 (875)
|++.+..||
T Consensus 573 ------------------------------------------------------------------~k~~~~~~~----- 581 (743)
T COG0046 573 ------------------------------------------------------------------RKVLTPELK----- 581 (743)
T ss_pred ------------------------------------------------------------------hhhcCcccc-----
Confidence 123344444
Q ss_pred CcceeeEEeecCCEEEEecccccccCccccccCCccccc-CC--CCCCCCCcccCchHHHHHHHHHHH-hH---Hhhhhc
Q psy5570 383 PLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSPLTSF-NH--GIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAE 455 (875)
Q Consensus 383 pls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~~~~v~-~~--G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~h 455 (875)
+.||.+.+.|...-.-|-+. +.+++ +. |..|. + +.+.+|.+|+.++ +| +|+|+|
T Consensus 582 ---------~~g~~i~llG~~~~~lggS~-----~~~~~~~~~~g~~p~----~-dl~~ek~~~~~i~~~i~~~~v~aah 642 (743)
T COG0046 582 ---------KAGLLLYLLGETKDELGGSE-----LAQVYHGLGDGPPPV----V-DLAEEKKFFDAIRALIADGKVLAAH 642 (743)
T ss_pred ---------CCCcEEEEeCCCccccchhH-----HHHHHhcccCCCCCC----C-CHHHHHHHHHHHHHHHhcCceEEEE
Confidence 33565444443221111121 12222 23 44555 4 5899999999999 87 899999
Q ss_pred ccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceeeEecC
Q psy5570 456 SFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEW 534 (875)
Q Consensus 456 dvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~vv~~~ 534 (875)
|+|+ ||+++|+||+ |++++|++ ||+..... .+.+..||||++|++|...
T Consensus 643 D~s~GGL~~aLaema-f~~~~G~~------i~~~~~~~-----------------------~~~~~~LFsE~~gr~i~~~ 692 (743)
T COG0046 643 DVSDGGLAVALAEMA-FAGGIGLE------IDLDELGD-----------------------DRLDALLFSESLGRVIVVV 692 (743)
T ss_pred EcccccHHHHHHHHH-hccCCceE------EEcccccc-----------------------cchhhHhhCcCCCcEEEEe
Confidence 9999 9999999999 99999999 99864321 0234689999999994332
Q ss_pred -CHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHH
Q psy5570 535 -DLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWE 596 (875)
Q Consensus 535 -d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~ 596 (875)
+.+........ .++.+..+|.++..+ .+....++.. ...++.+|.+.|+
T Consensus 693 ~~~~~~~~~~~~------~~~~~~~~G~~~~~~------~~~~~~~~~~-~~~~~~el~~~~~ 742 (743)
T COG0046 693 AEEEAEVEGAEA------VGVPLKVIGLVGGDH------EIGAAVNEFL-VPVSVEELREAWE 742 (743)
T ss_pred cchhhhhhhhhh------cCceeeeeeeccccc------eEeecccccc-ccccHHHHHHhhc
Confidence 22221222222 456788899887652 3444444433 5678999999986
No 9
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=100.00 E-value=3.8e-41 Score=405.76 Aligned_cols=385 Identities=15% Similarity=0.108 Sum_probs=280.3
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccEE------EecccccccCCCCc-ccccccCCCCCCCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPCI------SHIVTLTSYISIPQ-VFTLARAPGFPTTAHT 67 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------~~~~~~~l~~~~P~-~~~~~~~~~~~~~~~~ 67 (875)
|++.++|++.+++.. +++++++|+. +++++.++ +|+|...|.+++|+ +|+.+.++ ...+..
T Consensus 312 ml~~v~~~~~~~~~~----~~~~~~~~~~vIG~vt~~~~~~~~~~g~~v~d~~~~~l~~~~p~~~~~~~~~~-~~~~~~- 385 (724)
T PRK01213 312 MLLVVKPGKEEEVLA----IFEKWDLDAAVIGEVTDDGRLRVYHHGEVVADVPAEALADEAPVYDRPYKEPA-YLDELQ- 385 (724)
T ss_pred EEEEECHHHHHHHHH----HHHHcCCCEEEEEEEecCCeEEEEECCeEEEEeEHHHhcCCCCceeccccCcc-cccccc-
Confidence 789999999999999 9999999985 45555554 89988888999999 88875532 222221
Q ss_pred CCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccC
Q psy5570 68 PPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVD 147 (875)
Q Consensus 68 p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~d 147 (875)
+...+++++++++|++||||||+||++||||+||++||++| +.||||++++ ++.++++||+|++|+++.+|
T Consensus 386 ~~~~~l~~~~~~~l~~~~v~sk~~i~~~yD~~V~~~tv~~p--------GdDaAVi~~~-~~~~~l~~s~D~~~~~~~~~ 456 (724)
T PRK01213 386 ADPEDLKEALLKLLSSPNIASKEWVYEQYDHEVQTNTVVKP--------GGDAAVLRIR-GGGKGLALTTDCNPRYVYLD 456 (724)
T ss_pred cCCcCHHHHHHHHhcCCcccchhhhhhccCceecCCccccC--------CCCeEEEEec-CCCEEEEEEecCCCCccccC
Confidence 22348999999999999999999999999999999999866 2799999987 55789999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 148 PKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 148 Py~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
||+||++||+|+++||+|+|+.++. +.+|+||. ++ .+|+ +|++.++ ++||.++|++||+|+|||+
T Consensus 457 P~~~g~~AV~~avsdiaa~Ga~P~~-~~~~l~~~----------~p-~~~~~~~~l~~~--~~Gi~~a~~~~gvpivGG~ 522 (724)
T PRK01213 457 PYEGAKLAVAEAARNLAAVGATPLA-ITDCLNFG----------NP-EKPEVMWQFVEA--VRGLADACRALGTPVVGGN 522 (724)
T ss_pred HHHHHHHHHHHHHHHHhccCCeehh-heeeeecC----------CC-CchHHHHHHHHH--HHHHHHHHHHhCCCcccce
Confidence 9999999999999999999986544 88888874 11 3455 7778777 9999999999999999999
Q ss_pred CCCCCCCccccccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCCcceE
Q psy5570 227 NPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSRKTC 306 (875)
Q Consensus 227 dsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~~~s~ 306 (875)
+||++++... ..++++ ...++|.+- +
T Consensus 523 ~s~~n~~~~~--~i~pt~----------------------------~vt~vG~~~--~---------------------- 548 (724)
T PRK01213 523 VSLYNETGGT--AIYPTP----------------------------VIGMVGLID--D---------------------- 548 (724)
T ss_pred eeeeCCCCCc--ccCCcc----------------------------eEEEEEEec--C----------------------
Confidence 9998733211 111111 001112110 0
Q ss_pred EEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccCCCCcce
Q psy5570 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSV 386 (875)
Q Consensus 307 laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~ 386 (875)
.+.+.++.++
T Consensus 549 -------------------------------------------------------------~~~~~~~~~k--------- 558 (724)
T PRK01213 549 -------------------------------------------------------------VSKRTTSGFK--------- 558 (724)
T ss_pred -------------------------------------------------------------HhhCcChhcC---------
Confidence 0112222332
Q ss_pred eeEEeecCCEEEEecccccccCccccccCC-ccccc-CC--CCCCCCCcccCchHHHHHHHHHHH-hH---HhhhhcccC
Q psy5570 387 YMKVYKVGDIVDIKCAESFYDRMTECVYSS-PLTSF-NH--GIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAESFY 458 (875)
Q Consensus 387 ~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~-~~~v~-~~--G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~hdvs 458 (875)
+.||.+.+.+... ....|. +..++ ++ +..|+ + +.+..+..+..+. ++ .|.|+||+|
T Consensus 559 -----~~GD~I~l~g~~~------~~~ggs~~~~~~~~~~~~~~p~----~-~~~~~~~~~~~l~~l~~~g~v~a~~DvS 622 (724)
T PRK01213 559 -----KEGDLIYLLGETK------DELGGSEYLKVIHGHVGGRPPK----V-DLEAEKRLQELVREAIREGLVTSAHDVS 622 (724)
T ss_pred -----CCCCEEEEEcCCC------CCccHHHHHHHhcCCcCCCCCC----C-CHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 3477765544322 111110 11111 33 44666 4 3666788888877 66 689999999
Q ss_pred C-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceee---EecC
Q psy5570 459 D-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLA---FDEW 534 (875)
Q Consensus 459 D-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~v---v~~~ 534 (875)
| ||+.+|+||+ +++++|++ ||+.... +....||+|+.|.+ +.++
T Consensus 623 dGGL~~aL~ema-~as~~G~~------I~l~~~~-------------------------~~~~~Lf~e~~g~~v~~V~~~ 670 (724)
T PRK01213 623 EGGLAVALAEMA-IAGGLGAE------VDLSDGL-------------------------RPDALLFSESQGRYVVSVPPE 670 (724)
T ss_pred cCcHHHHHHHHH-hcCCceEE------EEeCCCC-------------------------ChHHHhhCCCCceEEEEEchh
Confidence 9 9999999999 99999999 8875211 12367999999965 5556
Q ss_pred CHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHH
Q psy5570 535 DLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELE 603 (875)
Q Consensus 535 d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~ 603 (875)
+.+.+.++++. .++++..||++++. .+++..++ .+ ++++|++.|++++..+.
T Consensus 671 ~~~~v~~~l~~------~gi~~~~IG~v~~~-------~l~i~~~~-~~---~~~~l~~~w~~~~~~~~ 722 (724)
T PRK01213 671 NEEAFEALAEA------AGVPATRIGVVGGD-------ALKVKGND-TE---SLEELREAWEGALPRLL 722 (724)
T ss_pred HHHHHHHHHHH------CCCCeEEEEEEcCC-------EEEEecCC-cc---cHHHHHHHHHHHHHHHh
Confidence 66778888876 67889999998653 35554332 22 69999999999987554
No 10
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=4.7e-39 Score=330.12 Aligned_cols=151 Identities=28% Similarity=0.466 Sum_probs=136.7
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+||||||+|||+||++||++||+++|++++.||++|+..+. +||+||+|||||||||||+ |||+++ +++++
T Consensus 2 ~~kvaVi~fpGtN~d~d~~~A~~~aG~~~~~V~~~d~~~~~----~~d~vv~pGGFSyGDyLr~--Gaiaa~---~~v~~ 72 (231)
T COG0047 2 RPKVAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLGR----DFDGVVLPGGFSYGDYLRA--GAIAAI---APVMD 72 (231)
T ss_pred CceEEEEEcCCcCchHHHHHHHHHcCCCceEEEeeecccCC----CccEEEEcCCCCcccccCc--chHHhh---HHHHH
Confidence 68999999999999999999999999999999999654332 8999999999999999995 787777 89999
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCCCeEEeccEEec--cC------Cc---eEEEeecce----
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIKSRVRCPPLKKE--KS------GV---NITRLSITL---- 814 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~~~f~~~~v~v~--~~------~~---~~~r~pi~~---- 814 (875)
+|++|++ +|+|+||||||||+|+|+|||||+ +.+|.+.||+||||.++ ++ ++ +.+++||+|
T Consensus 73 ~v~~~a~-~g~~vLGICNGfQiL~e~gLlPGa---l~~N~s~~F~cr~v~l~V~~~~t~ft~~~~~g~~i~ipVAHgEGr 148 (231)
T COG0047 73 EVREFAE-KGKPVLGICNGFQILSEAGLLPGA---LTRNESLRFECRWVYLRVENNNTPFTSGYEGGEVIPIPVAHGEGR 148 (231)
T ss_pred HHHHHHH-CCCeEEEEcchhHHHHHcCcCCcc---eecCCCCceEEEEEEEEEecCCCHHHHhcCCCceEEEEEeeccee
Confidence 9999999 599999999999999999999996 89999999999999984 32 23 689999999
Q ss_pred eecCHHHHHHHHhCCCcee
Q psy5570 815 NFSTSDTLSWLLDSNTNVT 833 (875)
Q Consensus 815 ~f~~~~~l~~l~~~~~~~~ 833 (875)
||+++++|++|++|||-|.
T Consensus 149 ~~~~~~~l~~l~~ngqvvf 167 (231)
T COG0047 149 YYADDETLAELEENGQVVF 167 (231)
T ss_pred EEccHHHHHHHhhCCeEEE
Confidence 8888889999999999664
No 11
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=100.00 E-value=5.1e-36 Score=361.13 Aligned_cols=390 Identities=15% Similarity=0.103 Sum_probs=274.0
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccE------EEecccccccCCCCc-ccccccCCCCCCCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPC------ISHIVTLTSYISIPQ-VFTLARAPGFPTTAHT 67 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~l~~~~P~-~~~~~~~~~~~~~~~~ 67 (875)
|++.+.|++.+++.. +++++++|+. +++++.+ ++|+|...|.. +|+ +|+..+++...+....
T Consensus 301 ll~~v~~~~~~~~~~----~~~~~g~~~~vIG~v~~~~~~~v~~~g~~~~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~ 375 (715)
T TIGR01736 301 MLLVVAPEDVEEVLE----IFEKYELPASVIGEVTDEGRIRLYYKGEVVADLPIELLAD-APEYERPSEPPKYPEEEKEP 375 (715)
T ss_pred EEEEEChhhHHHHHH----HHHHcCCCEEEEEEEecCCeEEEEECCceEEEeeHHHHcC-CCceeccccccccccccccc
Confidence 688999999999988 8888888885 4444444 38897766666 999 8887553211111112
Q ss_pred CCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccC
Q psy5570 68 PPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVD 147 (875)
Q Consensus 68 p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~d 147 (875)
|...++++++.++|+|||||||+||++||||+||++|+++| +.|+||++++.+..+|+++|+|++|+++.+|
T Consensus 376 ~~~~~~~~~~~~~l~~~~v~sK~~i~~~~d~~v~~~~~~~p--------gdDaaVi~~~~~~~~glv~t~D~~~~~~~~~ 447 (715)
T TIGR01736 376 EPPADLEDAFLKVLSSPNIASKEWVYRQYDHEVQTRTVVKP--------GEDAAVLRIKETGKLGLALTADCNPRYVYLD 447 (715)
T ss_pred CCcccHHHHHHHHhCCCcccChhhHHhhCCCccCCCeEecc--------CCceEEEEecCCCceEEEEEecCCCCchhcC
Confidence 22348999999999999999999999999999999999744 2399999987435678999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 148 PKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 148 Py~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
||.||++||+|+++||+|+|+.++. +.+++||. .+ .+|+ +|++.+. ++||.++|+++|+|+|||+
T Consensus 448 P~~~g~~aV~~~vsDiaa~Ga~P~~-~~~~l~~g----------~p-~~~~~~~~l~~~--~~gi~~~~~~~gv~ivGG~ 513 (715)
T TIGR01736 448 PYAGAAGAVAEAYRNLAAVGAEPLA-AVDCLNFG----------NP-ERPEVYWQFVEA--VKGLGDACRALGTPVVGGN 513 (715)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeehh-heeeeccC----------CC-CChhHHHHHHHH--HHHHHHHHHHhCCCcccce
Confidence 9999999999999999999986554 77788764 11 3344 6666666 9999999999999999999
Q ss_pred CCCCCCCccccccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCCcceE
Q psy5570 227 NPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSRKTC 306 (875)
Q Consensus 227 dsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~~~s~ 306 (875)
+||++.+... ...+++ ....+|++- +
T Consensus 514 ts~~~~~~~~--~i~pt~----------------------------~v~~~G~~~--~---------------------- 539 (715)
T TIGR01736 514 VSLYNETNGV--PIAPTP----------------------------TIGMVGLVE--D---------------------- 539 (715)
T ss_pred eeeccccCCC--CCCCcc----------------------------eEEEEEecc--C----------------------
Confidence 9998622100 000010 001111110 0
Q ss_pred EEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccCCCCcce
Q psy5570 307 LAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSV 386 (875)
Q Consensus 307 laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~ 386 (875)
.+..+++...
T Consensus 540 -------------------------------------------------------------~~~~i~~~~a--------- 549 (715)
T TIGR01736 540 -------------------------------------------------------------VEKLLTSNFK--------- 549 (715)
T ss_pred -------------------------------------------------------------hhhccCcccC---------
Confidence 0011121221
Q ss_pred eeEEeecCCEEEEecccccccCccccccCC-ccccc-CC--CCCCCCCcccCchHHHHHHHHHHH-hH---HhhhhcccC
Q psy5570 387 YMKVYKVGDIVDIKCAESFYDRMTECVYSS-PLTSF-NH--GIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAESFY 458 (875)
Q Consensus 387 ~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~-~~~v~-~~--G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~hdvs 458 (875)
+.||.+.+.+... ....|. +...+ +. +..|+ + +.+.++..+..+. ++ .+.|+||+|
T Consensus 550 -----~~Gd~i~l~g~~g------~~~~G~~~~~~~~~~~~~~~p~----~-~~~~~~~~~~~i~~l~~~g~v~a~~DiS 613 (715)
T TIGR01736 550 -----KEGDAIYLIGETK------DELGGSEYLRVIHGIVSGQVPA----V-DLEEEKELADAVREAIRAGLVSAAHDVS 613 (715)
T ss_pred -----CCCCEEEEEeCCC------CCccHHHHHHHhcCCcCCcCCC----C-CHHHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4577765544322 111111 11111 12 44666 4 3677788888777 65 689999999
Q ss_pred C-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceeeEecCCHH
Q psy5570 459 D-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEWDLE 537 (875)
Q Consensus 459 D-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~vv~~~d~~ 537 (875)
| ||+.+++||+ +++++|++ ||+...+. .+....||+|+.|++|.+.+.+
T Consensus 614 dGGL~~aL~ema-~~s~~G~~------I~l~~ip~-----------------------~~~~~~lfses~g~~v~~v~~~ 663 (715)
T TIGR01736 614 RGGLAVALAEMA-AASGIGAE------VDIDEIAS-----------------------ARPDELLFSESNGRAIVAVPEE 663 (715)
T ss_pred cChHHHHHHHHH-hCCCceEE------EEcCCCcC-----------------------cchHHHHhCCCCccEEEEECch
Confidence 9 9999999999 99999999 98764431 1234789999999774333334
Q ss_pred HHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHH
Q psy5570 538 YYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYE 601 (875)
Q Consensus 538 ~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~ 601 (875)
...+++++ .++++..||++. + ..+++..+++ ..+.++++|++.|++++.+
T Consensus 664 ~~~~~l~~------~gi~~~vIG~~~-~------~~l~i~~~~~-~~~~~~~~l~~~w~~~~~~ 713 (715)
T TIGR01736 664 KAEEAVKS------KGVPAKVIGKTG-G------DRLTIKTGDD-TISVSVKELRDAWEEALPE 713 (715)
T ss_pred HHHHHHHH------cCCCEEEEEEEC-C------CeEEEEECCE-EEEeeHHHHHHHHHHHHHh
Confidence 44556654 678899999943 3 2577888887 6788999999999998753
No 12
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=100.00 E-value=9.1e-37 Score=325.46 Aligned_cols=165 Identities=33% Similarity=0.458 Sum_probs=137.9
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
||||+|++|||+|||+|+++||+++||+++.|+++|+..++..|++||+|||||||||||++++++.||..++.++++++
T Consensus 1 kpkV~Vl~~pGtNce~e~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~ 80 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERETAAAFENAGFEPEIVHINDLLSGESDLDDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMD 80 (259)
T ss_dssp --EEEEEE-TTEEEHHHHHHHHHCTT-EEEEEECCHHHTTS--GCC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHcCCCceEEEEEecccccCchhhCcEEEECCccCccccchHHHHHHHHhhccHHHHH
Confidence 57999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcCCCCCCc-------cccccCCCCeEEeccEEecc---------CCceEEEeecc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVST-------QARQPYIKSRVRCPPLKKEK---------SGVNITRLSIT 813 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~-------~t~~~n~~~~f~~~~v~v~~---------~~~~~~r~pi~ 813 (875)
+|++|++++|+|+||||||||+|+++|||||.. .++.+|.++||+|+||.+.. .+++++++||+
T Consensus 81 ~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~~N~s~~fe~rwv~~~v~~~s~~~~~~~~~~~~lPia 160 (259)
T PF13507_consen 81 AIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALTPNASGRFESRWVNLVVNENSPSIFLRGLEGIVLPIA 160 (259)
T ss_dssp HHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE--TTSS-EEEEEEEEE--SSTTCCCTTTTCEEEEEE
T ss_pred HHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEcCCCCCCeEEEEEEEEEecCCcceecCCCCEEEEEEe
Confidence 999999977999999999999999999999932 46799999999999999831 14579999999
Q ss_pred e----eec-CHHHHHHHHhCCCceee
Q psy5570 814 L----NFS-TSDTLSWLLDSNTNVTV 834 (875)
Q Consensus 814 ~----~f~-~~~~l~~l~~~~~~~~~ 834 (875)
| |++ +++++++|+++||-+..
T Consensus 161 hgeG~~~~~~~~~l~~l~~~~qi~~~ 186 (259)
T PF13507_consen 161 HGEGRFYARDEATLEELEENGQIAFR 186 (259)
T ss_dssp ESS-EEE-SSHHHHHHHCCTTEEEEE
T ss_pred cCcceeecCCHHHHHHHHhcCeEEEE
Confidence 9 666 67779999999997653
No 13
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.97 E-value=2.6e-31 Score=310.48 Aligned_cols=196 Identities=12% Similarity=-0.006 Sum_probs=153.3
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccEE------EecccccccCCCCc-cc-ccccCCCCCCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPCI------SHIVTLTSYISIPQ-VF-TLARAPGFPTTAH 66 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~------~~~~~~~l~~~~P~-~~-~~~~~~~~~~~~~ 66 (875)
|++++.|++.+++.. +++++++++. +++++.+. +|+|...|.. .|+ ++ +.+ +..
T Consensus 283 mlv~V~~e~~~~~~~----i~~~~~l~a~vIG~Vt~~~~l~~~~~g~~v~dlp~~~L~~-~p~~~~~~~~--~~~----- 350 (601)
T PRK14090 283 MAVVTSPEKASRILE----IAKKHLLFGDIVAEVIDDPIYRVMYRDDLVMEVPVQLLAN-APEEEIVEYT--PGE----- 350 (601)
T ss_pred EEEEECHHHHHHHHH----HHHhCCCCEEEEEEEeCCceEEEEECCeEEEEccHHHHhc-CCcccccccC--ccc-----
Confidence 789999999999999 9999999864 45555543 9997766665 688 54 332 211
Q ss_pred CCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCccccc
Q psy5570 67 TPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLV 146 (875)
Q Consensus 67 ~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~ 146 (875)
++...+ ++|.+ +||+||+|||||+||++||++|+. |+||+|+. .+. |++++.++||+|+++
T Consensus 351 ~~~~~~--~~l~~-------~s~~~i~~qyD~~V~~~tv~~P~~--------~a~v~~~~-~~~-~~a~~~~~np~~~~~ 411 (601)
T PRK14090 351 IPEFKR--VEFEE-------VNAREVFEQYDHMVGTDTVLPPGF--------GAAVMRIK-RDG-GYSLVTHSRADLALQ 411 (601)
T ss_pred ccccch--HHHHH-------hhHHHHHHhcccccCCCccccCCC--------CcEEEEEc-CCC-eEEEEcCCCCceecc
Confidence 121112 23333 689999999999999999998764 48999996 344 999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcchhcccccccccchHHhhhhcCCcccCCC
Q psy5570 147 DPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 147 dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
|||+||++||+||+||++|+|+ ++..|++|+||+ +..+| -+|+.++ ++||+|+|++|++|+||||
T Consensus 412 ~p~~g~~~av~ea~rn~~~~Ga-~p~~i~~~~nf~-----------~p~~~-~~~~~~~--~~~~~~a~~~~~~p~i~G~ 476 (601)
T PRK14090 412 DTYWGTFIAVLESVRKTLSVGA-EPLAITNCVNYG-----------DPDVD-PVGLSAM--MTALKDACEFSGVPVASGN 476 (601)
T ss_pred CHHHHHHHHHHHHHhhHhhhCC-cHHHceechhcC-----------CCCCC-HHHHHHH--HHHHHHHHHHhCCCeecce
Confidence 9999999999999999999998 667799999985 11223 3477777 9999999999999999999
Q ss_pred CCCCCCCccccccccccc
Q psy5570 227 NPNGSPGKRERKKKTGRY 244 (875)
Q Consensus 227 dsm~~~~~~~~~~~~~~~ 244 (875)
|||+|++.+ +..|||+
T Consensus 477 ~S~~n~~~~--~~i~PT~ 492 (601)
T PRK14090 477 ASLYNTYQG--KPIPPTL 492 (601)
T ss_pred eccccCCCC--ccCCCCc
Confidence 999997653 4445555
No 14
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.97 E-value=7.5e-30 Score=273.04 Aligned_cols=162 Identities=25% Similarity=0.385 Sum_probs=140.8
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|||+|+++||+||++|+.+||+++|+++.+|++.++......+++||+||||||||++|+++++..|+..+. +.+++
T Consensus 3 ~~kvaVl~~pG~n~d~e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGfs~gD~l~~g~~~~~~l~--~~l~~ 80 (261)
T PRK01175 3 SIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSAGDYIRAGAIFAARLK--AVLRK 80 (261)
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCCCcccccccchhhHHHHH--HHHHH
Confidence 5799999999999999999999999999999999876665567899999999999999999999888876653 35778
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcCCCCCCc-------cccccCCCCeEEeccEEec--cC------Cc--eEEEeec
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVST-------QARQPYIKSRVRCPPLKKE--KS------GV--NITRLSI 812 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~-------~t~~~n~~~~f~~~~v~v~--~~------~~--~~~r~pi 812 (875)
.|++|+++ |+|+||||||||+|+++|||||.. .++.+|.++||+|+||.+. ++ ++ ..+++||
T Consensus 81 ~Ik~f~~~-gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s~~f~~~~~~~~v~~~~s~~~~~~~~~~~~~pi 159 (261)
T PRK01175 81 DIEEFIDE-GYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNESNRFECRPTYLKKENRKCIFTKLLKKDVFQVPV 159 (261)
T ss_pred HHHHHHHC-CCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCCCCeEEeeeEEEECCCCChhHhccCCCEEEEee
Confidence 99999995 999999999999999999999832 3689999999999999984 21 22 4688999
Q ss_pred ce----ee-cCHHHHHHHHhCCCceee
Q psy5570 813 TL----NF-STSDTLSWLLDSNTNVTV 834 (875)
Q Consensus 813 ~~----~f-~~~~~l~~l~~~~~~~~~ 834 (875)
+| || ++++++++|++|||-+.-
T Consensus 160 ah~eG~~~~~~~~~l~~l~~~~~i~~~ 186 (261)
T PRK01175 160 AHAEGRVVFSEEEILERLIENDQIVFR 186 (261)
T ss_pred EcCCcceEeCCHHHHHHHHHCCcEEEE
Confidence 99 54 798889999999997653
No 15
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.92 E-value=6e-25 Score=232.75 Aligned_cols=152 Identities=31% Similarity=0.499 Sum_probs=128.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+||+|||+||++|++.||+++|+++++|++.++...+.++++||+||||||++++|++++++.|+...+ +.+.++
T Consensus 1 v~vl~~pG~n~~~~~~~al~~aG~~v~~v~~~~~~~~~~~l~~~d~liipGG~~~~d~l~~~~~~~~~~~----~~~~l~ 76 (238)
T cd01740 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLRAGAIAAASPL----LMEEVK 76 (238)
T ss_pred CEEEEcCCcCCHHHHHHHHHHcCCCEEEEeccCCccccCCHhhCCEEEECCCCCcccccccccccccChh----HHHHHH
Confidence 6899999999999999999999999999999876555557899999999999999999998676655542 788999
Q ss_pred HHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCCCeEEecc----EEec--c------CC---ceEEEeecce---
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIKSRVRCPP----LKKE--K------SG---VNITRLSITL--- 814 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~~~f~~~~----v~v~--~------~~---~~~~r~pi~~--- 814 (875)
+|+++ |+|+||||+|||+|+++|+|+|.. ..|.+.+|.|++ +.+. + +. -..+.+|++|
T Consensus 77 ~~~~~-g~pvlGIC~G~QlL~~~gll~g~~---~~~~~~~~~~~~~~~~v~~~v~~~~si~t~~~~~g~~l~~~vaHgeG 152 (238)
T cd01740 77 EFAER-GGLVLGICNGFQILVELGLLPGAL---IRNKGLKFICRWQNRFVTLRVENNDSPFTKGYMEGEVLRIPVAHGEG 152 (238)
T ss_pred HHHhC-CCeEEEECcHHHHHHHcCCCcccc---ccCCCCceeccccCceEEEEEcCCCCceecCCCCCCEEEEEeECCce
Confidence 99985 999999999999999999999984 666777887765 6542 2 12 1468899999
Q ss_pred -eecCHHHHHHHHhCCCce
Q psy5570 815 -NFSTSDTLSWLLDSNTNV 832 (875)
Q Consensus 815 -~f~~~~~l~~l~~~~~~~ 832 (875)
||++++++++|++++|-+
T Consensus 153 ~~~~~~~~~~~l~~~~~i~ 171 (238)
T cd01740 153 RFYADDETLAELEENGQIA 171 (238)
T ss_pred eeEcCHHHHHHHHHCCCEE
Confidence 888888899999999966
No 16
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.92 E-value=2.6e-24 Score=225.35 Aligned_cols=148 Identities=24% Similarity=0.414 Sum_probs=129.5
Q ss_pred eEEEEEecCCCCCHHHHHHHHH-HcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQ-VCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~-~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
|||+||++||+||++|+.+||+ .+|+++..+++. +.+++++|+||||||++++|+++. +++..+..+.+
T Consensus 1 ~~v~Vl~~~G~n~~~d~~~a~~~~~G~~~~~v~~~-----~~~l~~~D~lvipGG~~~~d~l~~-----~~~~~~~~~~~ 70 (219)
T PRK03619 1 MKVAVIVFPGSNCDRDMARALRDLLGAEPEYVWHK-----ETDLDGVDAVVLPGGFSYGDYLRC-----GAIAAFSPIMK 70 (219)
T ss_pred CEEEEEecCCcChHHHHHHHHHhcCCCeEEEEecC-----cCCCCCCCEEEECCCCchhhhhcc-----chhhhchHHHH
Confidence 6899999999999999999999 899999999875 346889999999999999999876 44556678999
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCCCeEEeccEEec--cC------Cc---eEEEeecce----
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIKSRVRCPPLKKE--KS------GV---NITRLSITL---- 814 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~~~f~~~~v~v~--~~------~~---~~~r~pi~~---- 814 (875)
.+++|+++ |+|++|||+|+|+|+++|||+|. ..+|.+.+|+|+|+.+. ++ ++ +.+.+|++|
T Consensus 71 ~l~~~~~~-g~~ilgIC~G~qlLa~~GLL~g~---l~~n~~~~~~~~~v~v~i~~~~~~~~~~~~~g~~~~~~~aH~~~r 146 (219)
T PRK03619 71 AVKEFAEK-GKPVLGICNGFQILTEAGLLPGA---LTRNASLKFICRDVHLRVENNDTPFTSGYEKGEVIRIPIAHGEGN 146 (219)
T ss_pred HHHHHHHC-CCEEEEECHHHHHHHHcCCCCCe---EEEcCCCcEEEEEEEEEECCCCChhhcCCCCCCEEEEEEEcCccc
Confidence 99999985 99999999999999999999997 68999999999999983 21 22 357789999
Q ss_pred eecCHHHHHHHHhCCCce
Q psy5570 815 NFSTSDTLSWLLDSNTNV 832 (875)
Q Consensus 815 ~f~~~~~l~~l~~~~~~~ 832 (875)
|+++++.+++|+++||.+
T Consensus 147 ~~~~~~~~~~l~~~~~~~ 164 (219)
T PRK03619 147 YYADEETLKRLEGNGQVV 164 (219)
T ss_pred EEECHHHHHHHHhCCcEE
Confidence 788888899999999974
No 17
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.90 E-value=1.7e-23 Score=220.29 Aligned_cols=148 Identities=25% Similarity=0.434 Sum_probs=128.1
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||+|++|||+||++++++||+++|+++.++++.+ ..++++|+||||||++++|+++. +.+..+.++++.
T Consensus 1 ~~v~Vl~~~G~n~~~~~~~al~~~G~~~~~i~~~~-----~~l~~~d~lilpGG~~~~d~~~~-----~~~~~~~~~~~~ 70 (227)
T TIGR01737 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVWYED-----GSLPDYDGVVLPGGFSYGDYLRA-----GAIAAASPIMQE 70 (227)
T ss_pred CeEEEEeCCCcCcHHHHHHHHHHCCCeEEEEecCC-----CCCCCCCEEEECCCCcccccccc-----cchhcchHHHHH
Confidence 68999999999999999999999999999998753 23789999999999999999876 344556778899
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCCCeEEeccEEec--cC------Cc---eEEEeecce----e
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIKSRVRCPPLKKE--KS------GV---NITRLSITL----N 815 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~~~f~~~~v~v~--~~------~~---~~~r~pi~~----~ 815 (875)
+++|.++ |+|++|||+|||+|+++|+|+|. ..+|.+.+|+|+|+.+. ++ ++ +.+.+||+| |
T Consensus 71 l~~~~~~-g~pvlgIC~G~QlLa~~GlL~G~---l~~n~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~pi~H~eG~y 146 (227)
T TIGR01737 71 VREFAEK-GVPVLGICNGFQILVEAGLLPGA---LLPNDSLRFICRWVYLRVENADTIFTKNYKKGEVIRIPIAHGEGRY 146 (227)
T ss_pred HHHHHHc-CCEEEEECHHHHHHHHcCCCCCc---eeecCCCceEEEeEEEEECCCCChhhccCCCCCEEEEEeEcCCcCe
Confidence 9999985 99999999999999999999996 68888899999999873 21 12 468999999 8
Q ss_pred ecCHHHHHHHHhCCCce
Q psy5570 816 FSTSDTLSWLLDSNTNV 832 (875)
Q Consensus 816 f~~~~~l~~l~~~~~~~ 832 (875)
+++++++++|++++|-+
T Consensus 147 ~~~~~~l~~l~~~~~i~ 163 (227)
T TIGR01737 147 YADDETLARLESNDQVV 163 (227)
T ss_pred EcCHHHHHHHHHCCcEE
Confidence 88888899999999944
No 18
>cd02193 PurL Formylglycinamide ribonucleotide amidotransferase (FGAR-AT) catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.82 E-value=3.4e-20 Score=200.03 Aligned_cols=88 Identities=18% Similarity=0.135 Sum_probs=70.7
Q ss_pred EEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccc
Q psy5570 132 GAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLP 210 (875)
Q Consensus 132 g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~ 210 (875)
++||++|++|+++.+|||.||+.||+|+++||+|+|. +.+.+.++.|++ |+.++|. ..++.++ ++|
T Consensus 2 ~~a~~~~~~~~~~~~~p~~g~~~av~~~~~diaa~G~-~a~P~~~~~~l~----------~~~~~p~~~~~l~~~--~~g 68 (272)
T cd02193 2 GEAMKIEEHNHPAAIDPAAGAATGVGGAIRDIAATGI-DAKPIALSANWM----------ASAGHPGEDAILYDA--VKG 68 (272)
T ss_pred ccEEeecCCCCccccChHHHHHHHHHHHHhhhhhcCC-CccceEEeeecc----------cCCCCCCHHHHHHHH--HHH
Confidence 6899999999999999999999999999999999993 333445555555 3334553 2223333 999
Q ss_pred hHHhhhhcCCcccCCCCCCCCC
Q psy5570 211 IRYVDDNNKITEDYPMNPNGSP 232 (875)
Q Consensus 211 l~d~~~~lgiP~i~gkdsm~~~ 232 (875)
|.++|+++|+|+|+|++|++++
T Consensus 69 i~~a~~~~g~pivgG~~s~~~~ 90 (272)
T cd02193 69 VAELCNQLGLPIPVGKDRMSMK 90 (272)
T ss_pred HHHHhHhhCCcccCCEeccccc
Confidence 9999999999999999999973
No 19
>cd02204 PurL_repeat2 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), second repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.80 E-value=4.4e-19 Score=189.62 Aligned_cols=100 Identities=25% Similarity=0.169 Sum_probs=84.7
Q ss_pred ceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCc-
Q psy5570 119 DVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNH- 197 (875)
Q Consensus 119 DaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P- 197 (875)
|++|++++.++.+++++|+|++|+++..|||+++++||.|+++||+++|+.+. .+.++++|. |+...+
T Consensus 1 Daav~~~~~~~~~~~~~t~d~~~~~~~~~p~~~g~~av~~~~sDiaa~Ga~P~-~~~~~l~~~----------~~~~~~~ 69 (264)
T cd02204 1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPL-AITDCLNFG----------NPEKPEG 69 (264)
T ss_pred CcEEEEEeCCCCeEEEEEcCCCCceeeeCHHHHHHHHHHHHHHHHhhhCCchH-heeeceecc----------CCCCCcc
Confidence 78999987336789999999999999999999999999999999999998665 688888887 543333
Q ss_pred chhcccccccccchHHhhhhcCCcccCCCCCCCC
Q psy5570 198 GIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGS 231 (875)
Q Consensus 198 ~l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~ 231 (875)
..+++.+. ++||.++|+++|+|++||++|+++
T Consensus 70 ~~~~l~~~--~~g~~~~~~~~gv~ivGG~t~~~~ 101 (264)
T cd02204 70 EMGQLVEA--VLGLGDACRALGTPVIGGKDSLYN 101 (264)
T ss_pred hHHHHHHH--HHHHHHHHHHhCCCcccceeCCcc
Confidence 23344444 999999999999999999999987
No 20
>KOG1907|consensus
Probab=99.79 E-value=9e-20 Score=211.79 Aligned_cols=207 Identities=33% Similarity=0.458 Sum_probs=136.9
Q ss_pred cCCChHHHHhcCC--cccccCCCCCCCceEEE---eCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceeeE
Q psy5570 457 FYDRMTECVYSSP--LTSFNHGIKPDPWFYVD---VMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAF 531 (875)
Q Consensus 457 vsDGL~~al~eMa--~~~~~~G~~~~~~~~Id---l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~vv 531 (875)
++|+|++|||--- ....+---+|++...+. ....++.+|+++|++ +|+++
T Consensus 143 ~~DRMTe~ly~~~p~~~~~Fd~~~p~~~v~~~~~p~~~~~k~~L~~aNqe-------------------------lGLAl 197 (1320)
T KOG1907|consen 143 LYDRMTEALYTNEPPTMVSFDDEEPKPQVEVVFVPDKQEGKQALEKANQE-------------------------LGLAL 197 (1320)
T ss_pred HHHHHHHHHhccCCCcccccccCCCCccceeeeccchhhHHHHHHHHHHH-------------------------hcccc
Confidence 4779999999211 01111222344443333 334577888887765 79999
Q ss_pred ecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHhhhcCccc
Q psy5570 532 DEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARC 611 (875)
Q Consensus 532 ~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~~~~np~~ 611 (875)
++.|++|+.++|.++++||||+||++++||+||||||||||++.|+|||++.. .+|+++.++|.. .-.+|...
T Consensus 198 d~~dldyy~~~f~~~~kR~PTdVELFd~aQsnSEHsRHwfF~g~~~IDg~k~d----~SL~kmIr~T~~---~n~~ntii 270 (1320)
T KOG1907|consen 198 DQLDLDYYYDLFVEEVKRNPTDVELFDFAQSNSEHSRHWFFRGDWTIDGRKQD----KSLFKMIRNTHD---SNNDNTII 270 (1320)
T ss_pred CcccHHHHHHHHHHHhcCCCCceeeeeeccccchhhhhheeccceEEecccCc----hHHHHHHHHHHh---cCCCCceE
Confidence 99999999999999999999999999999999999999999999999999986 588889988874 22344444
Q ss_pred hhhhhhhccccC-CCceecCCCCccccccccccc----ccccCCcccCCCCccccccccccccceEEEEEecCCCCCHHH
Q psy5570 612 ADEEYNSLVTRI-GPKYQYQPVRDDIVGATLGKK----VTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDRE 686 (875)
Q Consensus 612 a~~e~~~~~~~~-~p~~~f~p~~~~~~~~~~~~~----~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~pG~n~~~e 686 (875)
+-+ .++.+.+. +....|.|+ ....++.... -+-..+||||||++.||+||++++ -+=|++.|..+-.+
T Consensus 271 afs-DNssa~~gf~~~~~~~P~--s~v~~~~~~~~~~~ll~~aETHN~PtAVsPfpGA~TGt----GGrIRD~~atGrGs 343 (1320)
T KOG1907|consen 271 AFS-DNSSAIRGFNSVTRFAPN--STVSPWIVIFEPSDLLFKAETHNHPTAVSPFPGATTGT----GGRIRDEGATGRGS 343 (1320)
T ss_pred Eec-cchHHhhccccceeeccc--cccccceeecCCcceEEEeeccCCCcccCCCCCCccCC----Cceeeccccccccc
Confidence 422 23333333 223336664 1222222111 233456999999999999999984 33356655554444
Q ss_pred HHHHHHHcCCeeEEEEe
Q psy5570 687 MSAMAQVCGFEVWDITV 703 (875)
Q Consensus 687 ~~~A~~~aG~~v~~V~~ 703 (875)
...| -.+|+.|-.+.+
T Consensus 344 ~~~a-gtaGysvg~Lni 359 (1320)
T KOG1907|consen 344 YEIA-GTAGYSVGDLNI 359 (1320)
T ss_pred eeee-cccccccccccC
Confidence 3322 334555555443
No 21
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.76 E-value=2.9e-19 Score=223.41 Aligned_cols=187 Identities=40% Similarity=0.624 Sum_probs=134.9
Q ss_pred cCCChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceeeEecCCH
Q psy5570 457 FYDRMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEWDL 536 (875)
Q Consensus 457 vsDGL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~vv~~~d~ 536 (875)
+||+|+++++.-..-..+...+|+++..||+...++.+|+++|. +.|++++.+|+
T Consensus 129 ~~drmte~~~~~~~~~~~~~~~p~~~~~v~~~~~~~~~L~~~~~-------------------------~~gLAl~~~ei 183 (1307)
T PLN03206 129 VHDRMTECVYPQPLTSFESGVVPEPVYTVPVMEEGRAALEEINK-------------------------EMGLAFDEQDL 183 (1307)
T ss_pred cCCCCcceecCCchHhhcCCCCCCCceEECCCCCCHHHHHHHHH-------------------------hcCCcCCHHHH
Confidence 68899999998764566788999999999998788888777654 47999999999
Q ss_pred HHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHhhhcCccchhhhh
Q psy5570 537 EYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEY 616 (875)
Q Consensus 537 ~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~~~~np~~a~~e~ 616 (875)
+|+.+.|++.++||||++|+++|+|+||||||||||+.+|.++|++.. .+|+++.+.|.... +++-..+..+
T Consensus 184 ~~~~~~F~~~~~R~PTd~El~~~aq~~SEHCRHk~F~~~~~id~~~~~----~sL~~mi~~t~~~~---~~~~~~~~~D- 255 (1307)
T PLN03206 184 DYYTRLFRDDIKRDPTNVELFDIAQSNSEHSRHWFFSGKLVIDGQPMP----KTLFQMVKDTLKAN---PNNSVIGFKD- 255 (1307)
T ss_pred HHHHHHHhhhcCCCCcHHHHHHHHhhhhhccCcceeeeEEEEcCCcCC----ccHHHHHHHHHHHC---CCCceEEeee-
Confidence 999999987799999999999999999999999999999999997764 47999999887633 2222222111
Q ss_pred hhccccCCCceecCCCCcccccccc--ccc--ccccCCcccCCCCccccccccccccceEEEEEecCC
Q psy5570 617 NSLVTRIGPKYQYQPVRDDIVGATL--GKK--VTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEG 680 (875)
Q Consensus 617 ~~~~~~~~p~~~f~p~~~~~~~~~~--~~~--~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~pG 680 (875)
++-..+....-.|-|.+.+....+. ... .+=..+|||||++++||+||+|+ --++|++++
T Consensus 256 ns~~i~g~~~~~~~~~~~~~~~~~~~~~e~~~i~fK~ETHNHPTaIePf~GAATG----vGG~IRD~~ 319 (1307)
T PLN03206 256 NSSAIRGFVVQPLRPVSPGSPSPLAPVDRDLDILLTAETHNFPCAVAPYPGAETG----AGGRIRDTH 319 (1307)
T ss_pred hhhhhccceeeEEeccCCCCCcceeEecCceEEEEEeccCCCCCccCCCCccccc----CCceeeccc
Confidence 2211111111113333211111111 111 33456799999999999999998 445555555
No 22
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=99.73 E-value=7.6e-19 Score=160.50 Aligned_cols=68 Identities=29% Similarity=0.361 Sum_probs=66.3
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GI 425 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~ 425 (875)
|++|+|+|++||++||++||++|.+|++++|++|+.||+|+|++++++||||| ++|||+||+|+|. |+
T Consensus 2 M~~s~G~R~~TR~~fsk~~R~~G~~~ls~~l~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~ 71 (98)
T PRK04306 2 MKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGR 71 (98)
T ss_pred CCCCCCccccchhhhCcCccccCCCcHHHHHHhccCCCEEEEEecCceecCCccccccCCCEEEEeecCe
Confidence 77999999999999999999999999999999999999999999999999999 9999999999998 65
No 23
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.72 E-value=6.8e-17 Score=203.60 Aligned_cols=291 Identities=9% Similarity=-0.021 Sum_probs=193.9
Q ss_pred cEEEEEEecCCCcccccCHHHHHHHHHHHHHhhcccc--CCcccccceeccccccccccCCccccc--ccCcc-hhc---
Q psy5570 130 LRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFA--KISDLKFLFASSRSIHIFHYSFSGRFA--FKNHG-IYD--- 201 (875)
Q Consensus 130 ~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~--g~~~l~~i~ls~n~~~~~~~~~~~~w~--~g~P~-l~~--- 201 (875)
..+++++...++..+.+|||.||+.+|.|++||++++ |+.++. ++.++||..++.-.....|- .++|+ +|+
T Consensus 288 ~~~i~~k~Ethnhpt~i~Py~GAatgvgg~iRD~~a~GrGa~PiA-~~d~l~fg~p~~~~~~~~~e~~~~~P~~~~~p~~ 366 (1310)
T TIGR01735 288 LVHILMKVETHNHPTAIAPFPGASTGAGGEIRDEGATGRGAKPKA-GLTGFCVSNLNIPGLEQPWEDPFQKPERIASPLD 366 (1310)
T ss_pred ceEEEEEeccCCCCCccCchhhHHHHHhHhHhChhhhCCCCeeee-eeeeeecCCCCCCCCCCccccccCCchhhccHHH
Confidence 4799999999999999999999999999999999999 876666 77888876443222224462 35787 889
Q ss_pred -ccccccccchHHhhhhcCCcccCCCCCCCCCCccccccccccccccccccccccCCCccccCCCccee---cceeeecc
Q psy5570 202 -HLDRSQCLPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRV---FNVTQHAV 277 (875)
Q Consensus 202 -a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v---~~~~~~a~ 277 (875)
++++ ++|++++|.++|+|+|+|+.|..++... ..||.+ .+.+..+
T Consensus 367 Il~e~--~~G~~~~gn~~G~P~v~G~vs~f~~~~~----------------------------~~~g~~~~~~~P~~~~- 415 (1310)
T TIGR01735 367 IMIEA--PLGAAAFNNEFGRPNLLGYFRTFELKAS----------------------------LPGGQVRGYHKPIMLA- 415 (1310)
T ss_pred HHHHH--HHHHHHHhhhhCCcccceeeeecccccc----------------------------ccccccccccCCccEE-
Confidence 8888 9999999999999999999976542110 001111 1111000
Q ss_pred cEEEEcccccccccccccccCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccccccc
Q psy5570 278 GVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSN 357 (875)
Q Consensus 278 g~~v~k~v~~ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~ 357 (875)
|.+ +.++
T Consensus 416 g~v----------------------------------------------------------------------G~i~--- 422 (1310)
T TIGR01735 416 GGI----------------------------------------------------------------------GSID--- 422 (1310)
T ss_pred EEE----------------------------------------------------------------------EEec---
Confidence 110 1110
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-----ccccCCcccccCCCCCCCCCcc
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-----ECVYSSPLTSFNHGIKPDPWFY 432 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-----~~~~g~~~~v~~~G~~p~~~~~ 432 (875)
. .. ..+.++ +.||.|.+.|..+.-.|+= ...+|....-...+.+|.
T Consensus 423 --~--------~~-~~~~~~--------------~~G~~ivllGg~~~rdglgGs~~ss~~~g~~~~~~~~~~Vq~---- 473 (1310)
T TIGR01735 423 --A--------EH-IQKGEI--------------EPGALLIVLGGPAMLIGLGGGAASSMVSGTNTADLDFASVQR---- 473 (1310)
T ss_pred --h--------hh-cccCCC--------------CCCCEEEEECCCCCCCCccHHHHHHHHhCCCcccccCCCCCC----
Confidence 0 01 112222 4578766655443222222 122222111001134444
Q ss_pred cCchHHHHHHHHHHH-hH------HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccc
Q psy5570 433 VDVMGKGKVAFNSNS-LV------FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQ 504 (875)
Q Consensus 433 ~~~~~~~~~~f~~~~-li------~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~ 504 (875)
. |++..|.+.+.+. .+ .|.|+||++. ||+.|+.||+ ..++.|++ ||+...+.. .
T Consensus 474 g-dp~~ek~~~~~i~~~~~~~~~~~i~sihD~gaGGls~al~Ema-~~~g~G~~------i~L~~vp~~--------~-- 535 (1310)
T TIGR01735 474 G-NPEMERRCQEVIDRCWQLGEKNPIISIHDVGAGGLSNALPELI-HDGGRGAV------IDLRAVPLD--------D-- 535 (1310)
T ss_pred C-CHHHHHHHHHHHHHHHHcCCCCceEEEeccCccHHHHHHHHHH-hcCCceEE------EEcCCCccc--------C--
Confidence 3 4777788776666 33 5899999999 9999999999 88889999 998754311 0
Q ss_pred cchhhhhhhhcchhhhhhccccceee---EecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEEC--
Q psy5570 505 IGLLFIYFIVQRTKLCIVQRHEVGLA---FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVN-- 579 (875)
Q Consensus 505 ~~~~~~~~~~~~~~~~~LFsE~~G~v---v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~-- 579 (875)
.+.++++.||||+.+++ |.+++.+.+.++++. .++++..||+++++ .++++..+
T Consensus 536 ---------~~m~~~eil~sESQeR~vl~v~~~~~~~f~~i~~~------~~~~~~vIG~vt~~------~~l~v~~~~~ 594 (1310)
T TIGR01735 536 ---------PGLSPLEIWCNESQERYVLLVRAENLEIFTAICER------ERCPFAVVGTATGD------GRLTLVDDTP 594 (1310)
T ss_pred ---------CCCCHHHHhhccccccEEEEECcccHHHHHHHHHH------cCCCEEEEEEECCC------ceEEEEecCc
Confidence 12256789999999976 778899999999987 78999999999976 34666663
Q ss_pred -------------CEeeccccHHHHHH
Q psy5570 580 -------------NEPVLNEDLGTLFL 593 (875)
Q Consensus 580 -------------g~~i~~~~l~~L~~ 593 (875)
|+++.+.+++-|..
T Consensus 595 ~~~~~~~~~~~~~~~~~vdl~~~~L~~ 621 (1310)
T TIGR01735 595 VRRNGQGDAPSHFPNNPVDLPLEVLLG 621 (1310)
T ss_pred ccccccccccccCCCeEEEeEHHHHcC
Confidence 55666667776643
No 24
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=99.70 E-value=2.8e-18 Score=168.55 Aligned_cols=68 Identities=40% Similarity=0.632 Sum_probs=66.3
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GI 425 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~ 425 (875)
|++|+|+|++||++||++||+||++||+++|++|+.||+|+|++++++||||| ++|||+||+|+|. |+
T Consensus 1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~~ 70 (160)
T PTZ00189 1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPR 70 (160)
T ss_pred CCCCCCccccchhhhCccccccCCCcHHHHHHHccCCCEEEEEecCCeecCCCcccccCCCeEEEeecCe
Confidence 78999999999999999999999999999999999999999999999999999 9999999999998 65
No 25
>PLN00190 60S ribosomal protein L21; Provisional
Probab=99.70 E-value=2.9e-18 Score=168.17 Aligned_cols=68 Identities=40% Similarity=0.663 Sum_probs=66.3
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GI 425 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~ 425 (875)
|++|+|+|++||++||++||+||++||+++|++|+.||+|+|++++++||||| ++|||+||+|+|. |+
T Consensus 1 M~~s~G~R~~TR~~fsk~~R~~G~~pls~~l~~yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~~ 70 (158)
T PLN00190 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKR 70 (158)
T ss_pred CCCCCCccccchhhhCccccccCCCcHHHHHHHhcCCCEEEEEecCCeecCCCcccccCCCeEEEeecCc
Confidence 78999999999999999999999999999999999999999999999999999 9999999999998 65
No 26
>PRK14090 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.69 E-value=2.7e-16 Score=184.89 Aligned_cols=279 Identities=13% Similarity=-0.002 Sum_probs=185.7
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccC
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKN 196 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~ 196 (875)
..||+|+++. ...+++++++.++..+.+|||.||+.+|.+++|+++++|+.++. +.+++++. +
T Consensus 49 gdDAaVi~~~--~~~~l~~k~Eshn~ps~idPy~GAat~Vgg~irDIaamGA~Pia-lld~L~~~----------~---- 111 (601)
T PRK14090 49 EGNAGVVNLD--DYYSIAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTA-IFDSLHMS----------R---- 111 (601)
T ss_pred CCCeEEEEeC--CCCEEEEEECccCCcccCCHHHHHHHHHHHHHhhHhhcCCChhe-eEEcCChH----------H----
Confidence 4699999984 46789999999999999999999999999999999999986655 77777662 1
Q ss_pred cchhcccccccccchHHhhhhcCCcccCCCCCCCCCCccccccccccccccccccccccCCCccccCCCcceecceeeec
Q psy5570 197 HGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHA 276 (875)
Q Consensus 197 P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a 276 (875)
. +.+. ++||.++|+++|+|+|||..+.++.+... | + ++...
T Consensus 112 --~--l~~v--v~GI~~~~n~~GVP~VGGdt~~~~~y~~~---------------------p----------l--v~vt~ 152 (601)
T PRK14090 112 --I--IDGI--IEGIADYGNSIGVPTVGGELRISSLYAHN---------------------P----------L--VNVLA 152 (601)
T ss_pred --H--HHHH--HHHHHHHHHHhCCCEeeEEEEEeCCccCC---------------------C----------c--eEEEE
Confidence 2 2223 99999999999999999987765411000 0 0 01122
Q ss_pred ccEEEEcccccccccccccccCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccc
Q psy5570 277 VGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTS 356 (875)
Q Consensus 277 ~g~~v~k~v~~ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~ 356 (875)
+|++-.
T Consensus 153 vG~v~~-------------------------------------------------------------------------- 158 (601)
T PRK14090 153 AGVVRN-------------------------------------------------------------------------- 158 (601)
T ss_pred EEEEcC--------------------------------------------------------------------------
Confidence 232110
Q ss_pred cccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCccccccCCcc---cccCC-CCCCCCCcc
Q psy5570 357 NMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSPL---TSFNH-GIKPDPWFY 432 (875)
Q Consensus 357 ~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~~~---~v~~~-G~~p~~~~~ 432 (875)
..++.+... +.||.+.+.|..+--.| .||... .+.+. ...+. -+.
T Consensus 159 ------------~~iv~~~~a--------------~~GD~Ivl~G~~tGrdG----i~Gas~as~~l~~~~~~~~~-vq~ 207 (601)
T PRK14090 159 ------------DMLVDSKAS--------------RPGQVIVIFGGATGRDG----IHGASFASEDLTGEKATKLS-IQV 207 (601)
T ss_pred ------------ccccccCCC--------------CCCCEEEEEcCCCCCCC----cchHHHHHHHhcCCcccccc-ccc
Confidence 001111111 45788666443210001 112110 01111 00110 001
Q ss_pred cCchHHHHHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccch
Q psy5570 433 VDVMGKGKVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGL 507 (875)
Q Consensus 433 ~~~~~~~~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~ 507 (875)
. ++...|.....+. ++ .|.++||++. ||+.++.||| .+++.|++ ||+...+..
T Consensus 208 g-d~~~ek~l~e~~l~~~~~glI~a~~DigaGGLa~AL~EmA-~~sg~G~~------IdLdkVPl~-------------- 265 (601)
T PRK14090 208 G-DPFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELV-AKGGLGAI------VHLDRVPLR-------------- 265 (601)
T ss_pred C-CHHHHHHHHHHHHhHHhcCCeEEeeCCCCCcHHHHHHHHH-HHhCCeEE------EEecccccC--------------
Confidence 1 2333344455444 44 6899999986 9999999999 88999999 998754311
Q ss_pred hhhhhhhcchhhhhhccccceee---EecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeec
Q psy5570 508 LFIYFIVQRTKLCIVQRHEVGLA---FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVL 584 (875)
Q Consensus 508 ~~~~~~~~~~~~~~LFsE~~G~v---v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~ 584 (875)
..+.++++.||||+.|++ |.+++.+.+.+++++ .++++..||+++++ .++++.++|+.+.
T Consensus 266 -----~~~m~p~eil~SESqeRmlv~V~~e~~~~~~~i~~~------~~l~a~vIG~Vt~~------~~l~~~~~g~~v~ 328 (601)
T PRK14090 266 -----EPDMEPWEILISESQERMAVVTSPEKASRILEIAKK------HLLFGDIVAEVIDD------PIYRVMYRDDLVM 328 (601)
T ss_pred -----cccCCHHHHHhcCCCCeEEEEECHHHHHHHHHHHHh------CCCCEEEEEEEeCC------ceEEEEECCeEEE
Confidence 112357789999999987 566677778888886 67899999999977 4688889999999
Q ss_pred cccHHHHHHHH
Q psy5570 585 NEDLGTLFLIW 595 (875)
Q Consensus 585 ~~~l~~L~~~w 595 (875)
+.+++.|...+
T Consensus 329 dlp~~~L~~~p 339 (601)
T PRK14090 329 EVPVQLLANAP 339 (601)
T ss_pred EccHHHHhcCC
Confidence 99999988753
No 27
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.66 E-value=1.1e-16 Score=163.39 Aligned_cols=96 Identities=20% Similarity=0.323 Sum_probs=84.9
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|+|+|| ++|++|.+++.+||+++|+++.+ ..++..+..+|+|||||+++|+|+|.. |+...+.+.
T Consensus 2 ~~i~II-Dyg~GNL~Sv~~Aler~G~~~~v------s~d~~~i~~AD~liLPGVGaf~~am~~--------L~~~gl~~~ 66 (204)
T COG0118 2 MMVAII-DYGSGNLRSVKKALERLGAEVVV------SRDPEEILKADKLILPGVGAFGAAMAN--------LRERGLIEA 66 (204)
T ss_pred CEEEEE-EcCcchHHHHHHHHHHcCCeeEE------ecCHHHHhhCCEEEecCCCCHHHHHHH--------HHhcchHHH
Confidence 567876 99999999999999999998876 345667899999999999999999976 666699999
Q ss_pred HHHHHHCCCceEEEEehhHHHHHh----------cCCCCCCc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNL----------LGWFSVST 782 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~e----------lGlLpg~~ 782 (875)
|++.+.. ++|+||||+|||+|++ +||+||.+
T Consensus 67 i~~~~~~-~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V 107 (204)
T COG0118 67 IKEAVES-GKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKV 107 (204)
T ss_pred HHHHHhc-CCCEEEEeHhHHhhhhcccccCCCCCcceecceE
Confidence 9999984 8999999999999999 67888775
No 28
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=99.66 E-value=1.9e-17 Score=152.12 Aligned_cols=63 Identities=54% Similarity=0.812 Sum_probs=47.4
Q ss_pred cCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCccccc
Q psy5570 359 TNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSF 421 (875)
Q Consensus 359 ~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~ 421 (875)
++|+|+|++||++|+++||++|.+|++++|+.|+.||+|+|++++++||||| +||||+||+|+
T Consensus 1 ~~S~G~R~~TR~~fsk~~R~~G~~~ls~~l~~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~ 64 (99)
T PF01157_consen 1 TRSKGYRRGTRYKFSKPFRKHGMIPLSTYLQEYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVF 64 (99)
T ss_dssp -SS-STTTTTHHHHS--CCCTSS--CHHHH----TT-EEEE---TTSSSSS--GGGTTEEEEEE
T ss_pred CCCCCccCCCchhhcCCCccCCCCcHHHHHHHccCCCEEEEEecCccccCCCcceECCCceeEE
Confidence 4789999999999999999999999999999999999999999999999999 99999999999
No 29
>TIGR03267 methan_mark_2 putative methanogenesis marker protein 2. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. Sequence similarity to various bacterial proteins is reflected in Pfam models pfam00586 and pfam02769, AIR synthase related protein N-terminal and C-terminal domains, respectively. The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=99.66 E-value=2.5e-15 Score=166.28 Aligned_cols=125 Identities=9% Similarity=-0.100 Sum_probs=96.1
Q ss_pred HHHHHHHHhcCccccccc------ceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCC-Ccccc
Q psy5570 73 VLQALNNVMRLVSVGSKR------FLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQ-PIKGL 145 (875)
Q Consensus 73 l~~~l~~vL~~pnVaSK~------~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~-p~~~~ 145 (875)
+.+...++-+.-.+|.|- -|++|||++++..+++ |+ +.|++|++++ ...++++|++.. +....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~----GdDaavi~~~--~~~~lvistD~~~~~~~~ 71 (323)
T TIGR03267 2 LRELARELRSFEGVTRKHPIKDVVEILEPLDVTYEGNVIV----DF----GDDAAAIKIG--GDDILLLAADGIWGKLLD 71 (323)
T ss_pred HHHHHHHHHhCccchhhcCHHHHHHHhccccccCCCCeee----cc----CCceEEEEcC--CCCEEEEEecCcCCcccc
Confidence 445555666666666663 4789999999999986 43 4699999874 345678787766 45677
Q ss_pred cCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchHHhhhhcCCcccC
Q psy5570 146 VDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDY 224 (875)
Q Consensus 146 ~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~ 224 (875)
.|||.++..||..++++|+++|+.+. -+.+++++ ++|+ +.++ .+||.++|+++|+|+||
T Consensus 72 ~~p~~~G~~av~~nlsDiaamGa~P~-~~~~~L~~--------------~~~~~l~~~-----~~Gi~~a~~~~gi~ivG 131 (323)
T TIGR03267 72 ADPWWAGYCAVLVNVNDIAAMGGKPV-GMVNVLSI--------------NDVDVCREV-----LEGMREGAWKFGVPVVG 131 (323)
T ss_pred cChhHhhHHhhhhhhhhHHhcCCEeh-hHhhhhcC--------------CCHHHHHHH-----HHHHHHHHHHcCCCEEc
Confidence 89999999999999999999998554 47777765 2344 4444 89999999999999998
Q ss_pred CCC
Q psy5570 225 PMN 227 (875)
Q Consensus 225 gkd 227 (875)
|.=
T Consensus 132 GdT 134 (323)
T TIGR03267 132 GHT 134 (323)
T ss_pred ccc
Confidence 763
No 30
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=3.2e-16 Score=140.99 Aligned_cols=67 Identities=34% Similarity=0.422 Sum_probs=65.0
Q ss_pred CCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CCC
Q psy5570 360 NSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GIK 426 (875)
Q Consensus 360 ~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~~ 426 (875)
+|+|+|++||++|.+++|++|..|++++|+.|++||.|+|+++++|||||| ++|||+||+|+|. |+.
T Consensus 2 ~S~G~R~~TR~kl~k~~RerG~~plsr~l~ey~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~a 70 (98)
T COG2139 2 RSHGYRSRTRYKLQKDPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRA 70 (98)
T ss_pred CCccccccchhhhccCccccCCcchhhHHhhccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCE
Confidence 689999999999999999999999999999999999999999999999999 9999999999999 873
No 31
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=99.58 E-value=5.5e-15 Score=162.66 Aligned_cols=95 Identities=9% Similarity=-0.076 Sum_probs=71.4
Q ss_pred EEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhccccccccc
Q psy5570 131 RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCL 209 (875)
Q Consensus 131 ~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~ 209 (875)
.+++++...+++.+..|||.||+.||++++++++|+|+.+ .-+.+++++.-.. .+..=+.+.|. .+.+.+. ++
T Consensus 26 ~~~~~~~e~~~~~~~~~p~~~g~~~v~~~vsDiaamGa~P-~~~~~~l~~p~~~---~~~~~~~~~~~~~~~l~~~--~~ 99 (313)
T cd02203 26 WAVVFKVETHNHPSAIEPFGGAATGVGGIIRDILSMGARP-IALLDGLRFGDLD---IPGYEPKGKLSPRRILDGV--VA 99 (313)
T ss_pred hEEEEEeccCCCCCCcCCcccHhhhhhhhhhcccccCCEE-EEEeeEEeecCCc---ccccccccccCHHHHHHHH--HH
Confidence 4799999999999999999999999999999999999854 4477777763000 00000112233 4555555 99
Q ss_pred chHHhhhhcCCcccCCCCCCCC
Q psy5570 210 PIRYVDDNNKITEDYPMNPNGS 231 (875)
Q Consensus 210 ~l~d~~~~lgiP~i~gkdsm~~ 231 (875)
|+.++|+++|+|++||.-+.++
T Consensus 100 Gi~~~~~~~gv~lvGGdt~~~~ 121 (313)
T cd02203 100 GISDYGNCIGIPTVGGEVRFDP 121 (313)
T ss_pred HHHHHHHHhCCceeeeEEEEEC
Confidence 9999999999999999887654
No 32
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.57 E-value=4.7e-16 Score=196.64 Aligned_cols=174 Identities=30% Similarity=0.405 Sum_probs=117.7
Q ss_pred cCCChHHHHhcCCc-c-cccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceeeEecC
Q psy5570 457 FYDRMTECVYSSPL-T-SFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEW 534 (875)
Q Consensus 457 vsDGL~~al~eMa~-~-~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~vv~~~ 534 (875)
++|.|+++++.... . ......+|+++.+||+...++.+|+++| .+.|++++.+
T Consensus 127 l~n~m~e~~~~~~~~~~~~~~~~~p~~~~~v~~~~~~~~~L~~~~-------------------------~~~gLal~~~ 181 (1290)
T PRK05297 127 LHDRMTESVFADLDDAEALFSHHEPKPLTSVDVLGGGRAALEAAN-------------------------VELGLALAED 181 (1290)
T ss_pred hCCccceEEEcCcchhhhhhccCCCCCceEECCCCCCHHHHHHHH-------------------------HhcCCCCCHH
Confidence 46677887764421 0 2336778999999998667777777654 4579999999
Q ss_pred CHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHhhhcCccchhh
Q psy5570 535 DLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADE 614 (875)
Q Consensus 535 d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~~~~np~~a~~ 614 (875)
|++++.+.|+. |+|||+++|+++|+|+||||||||||+.+|.++|+... ..|+++.++|... +|....+
T Consensus 182 e~~~i~~~f~~-l~R~Ptd~El~~~~q~wSEHCrhk~F~~~~~id~~~~~----~~l~~~i~~t~~~------~~~~~~~ 250 (1290)
T PRK05297 182 EIDYLVEAFTK-LGRNPTDVELMMFAQANSEHCRHKIFNADWTIDGEEQP----KSLFKMIKNTHET------NPDGVLS 250 (1290)
T ss_pred HHHHHHHHHHh-cCCCCCHHHHHHHHHHhhhhcCCccCCCceeecCcccc----hHHHHHHHHHHHh------CCCcEEE
Confidence 99999999984 99999999999999999999999999999999998654 5677777776642 1211111
Q ss_pred hh--hhccccCCCceecCCCCcccccccc----cccccccCCcccCCCCccccccccccc
Q psy5570 615 EY--NSLVTRIGPKYQYQPVRDDIVGATL----GKKVTRIGPKYQYQPVRDDIVGATLGK 668 (875)
Q Consensus 615 e~--~~~~~~~~p~~~f~p~~~~~~~~~~----~~~~~~~~~thn~p~~~~p~~ga~~~~ 668 (875)
-| +.-..+....-+|.|+.++ ..+. ....+=..+|||||++++||+||+|+.
T Consensus 251 ~~~dna~vi~~~~~~~~~~~~~~--~~~~~~~e~~~~~fK~ETHNhPsaiePf~GAaTG~ 308 (1290)
T PRK05297 251 AYKDNAAVMEGSKVGRFFPDPDT--GRYGYHQEPAHILMKVETHNHPTAISPFPGAATGS 308 (1290)
T ss_pred EecCCcEEEEccccccccccccc--ccccccccceEEEEEeccCCCCCccCCCCcccccC
Confidence 11 1100001111113332110 0000 001333567999999999999999983
No 33
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.50 E-value=2.1e-14 Score=145.84 Aligned_cols=108 Identities=24% Similarity=0.293 Sum_probs=90.4
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
+||+|+..+|.+|+ ..+||+++|+++..+. .+.+++++|+||||||.+ .+. +.++++..+.+.
T Consensus 3 ~~igVLalqG~~~E--h~~al~~lG~~v~~v~------~~~~l~~~D~LILPGG~~-t~~--------~~ll~~~~l~~~ 65 (179)
T PRK13526 3 QKVGVLAIQGGYQK--HADMFKSLGVEVKLVK------FNNDFDSIDRLVIPGGES-TTL--------LNLLNKHQIFDK 65 (179)
T ss_pred cEEEEEECCccHHH--HHHHHHHcCCcEEEEC------CHHHHhCCCEEEECCChH-HHH--------HHHhhhcCcHHH
Confidence 68999999999987 7899999999977653 355689999999999855 322 345667789999
Q ss_pred HHHHHHCCCceEEEEehhHHHHHh----cCCCCCCccccccCCCCeEEeccEEe
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNL----LGWFSVSTQARQPYIKSRVRCPPLKK 800 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~e----lGlLpg~~~t~~~n~~~~f~~~~v~v 800 (875)
|++|.+ ++|++|||+|+|+|.+ +|++++. -.+|..+|++|+++.-
T Consensus 66 Ik~~~~--~kpilGICaG~qlL~~~s~~Lg~idg~---V~Rn~~Grq~~sf~~~ 114 (179)
T PRK13526 66 LYNFCS--SKPVFGTCAGSIILSKGEGYLNLLDLE---VQRNAYGRQVDSFVAD 114 (179)
T ss_pred HHHHHc--CCcEEEEcHHHHHHHccCCCCCCccEE---EEEcCCCCccceeeee
Confidence 999984 7899999999999999 7788776 5899999999998774
No 34
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.40 E-value=1.8e-13 Score=170.94 Aligned_cols=59 Identities=32% Similarity=0.437 Sum_probs=52.6
Q ss_pred ccccceeeEecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeec
Q psy5570 523 QRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVL 584 (875)
Q Consensus 523 FsE~~G~vv~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~ 584 (875)
|+.+.|++++.+|++++.+.|++ ++||||++|+++|+|+||||||||||+.+| ++..+.
T Consensus 179 ~~~e~gLAl~~~di~~i~~yF~~-~~R~PTd~El~~laq~wSeHCRH~~F~~~i--~~~~~~ 237 (1239)
T TIGR01857 179 FKAEQGLAMSLEDLKFIQDYFKS-IGRNPTETEIKVLDTYWSDHCRHTTFETEL--KHVTFS 237 (1239)
T ss_pred HHHhcCCCCCHHHHHHHHHHHHh-cCCCCChhheeeccccchhhhcCcccccee--cceecc
Confidence 45568999999999999999985 999999999999999999999999999984 565553
No 35
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.36 E-value=7.5e-13 Score=136.38 Aligned_cols=86 Identities=22% Similarity=0.383 Sum_probs=71.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+|+ ++|.+|.+++.+||+++|+++..+. ++.++.++|+|||||++++.+.+.. ++...+.+.++
T Consensus 2 i~ii-dyg~gN~~s~~~al~~~g~~~~~v~------~~~~l~~~D~lIlPG~g~~~~~~~~--------L~~~gl~~~i~ 66 (192)
T PRK13142 2 IVIV-DYGLGNISNVKRAIEHLGYEVVVSN------TSKIIDQAETIILPGVGHFKDAMSE--------IKRLNLNAILA 66 (192)
T ss_pred EEEE-EcCCccHHHHHHHHHHcCCCEEEEe------CHHHhccCCEEEECCCCCHHHHHHH--------HHHCCcHHHHH
Confidence 6665 9999999999999999999988753 2456889999999999998876643 45557888888
Q ss_pred HHHHCCCceEEEEehhHHHHHhcC
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLLG 776 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~elG 776 (875)
+ . .|+|+||||.|||+|.+..
T Consensus 67 ~--~-~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 67 K--N-TDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred H--h-CCCeEEEECHHHHHHhhhc
Confidence 7 4 4899999999999999943
No 36
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=99.35 E-value=4.1e-12 Score=133.45 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=104.7
Q ss_pred eEEEEEec-----CCCCCHHHH---HHHHHHcCCeeEEEEeec--------------------------------ccccc
Q psy5570 671 ISIAVLRE-----EGINGDREM---SAMAQVCGFEVWDITVQD--------------------------------LLENK 710 (875)
Q Consensus 671 ~kVaIlv~-----pG~n~~~e~---~~A~~~aG~~v~~V~~~d--------------------------------l~~~~ 710 (875)
+||+|++. +|+. +.|+ +.+|+++|++|++++... ..-++
T Consensus 2 kkVlills~~~~~dG~e-~~E~~~P~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (217)
T PRK11780 2 KKIAVILSGCGVYDGSE-IHEAVLTLLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKDLAE 80 (217)
T ss_pred CEEEEEEccCCCCCCEe-hhHHHHHHHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCchhH
Confidence 37999987 7887 6665 779999999999987521 01113
Q ss_pred cCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccc----
Q psy5570 711 ITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQ---- 786 (875)
Q Consensus 711 ~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~---- 786 (875)
.++++||+|+||||+...+.|.-=..--..+..++.+.+.+++|.+ +|||+.+||+|.|+|+++.. +|++.|+.
T Consensus 81 v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~-~gK~vaAIChgp~iL~~~~~-~gr~~T~~~~~~ 158 (217)
T PRK11780 81 ADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQ-AGKPIGFICIAPAMLPKILG-AGVKLTIGNDED 158 (217)
T ss_pred CChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHH-CCCEEEEECHHHHHHHHHhc-cCcEEEecCChh
Confidence 3467899999999987533221100000112348899999999999 49999999999999998621 78877655
Q ss_pred -----cCCCCeEEec---cEEecc-CCceEEEeecce--eecCHHHHHHHHh
Q psy5570 787 -----PYIKSRVRCP---PLKKEK-SGVNITRLSITL--NFSTSDTLSWLLD 827 (875)
Q Consensus 787 -----~n~~~~f~~~---~v~v~~-~~~~~~r~pi~~--~f~~~~~l~~l~~ 827 (875)
.|+++.|++. +|++|. +++.+++-+... +|-.-+.++.|..
T Consensus 159 ~~~~~~~aGa~~vd~~~~~vvvD~~~~lvt~~~~~~~~~~~~~~~~i~~~~~ 210 (217)
T PRK11780 159 TAAAIEKMGGEHVDCPVDDIVVDEENKVVTTPAYMLAQSIAEAASGIEKLVS 210 (217)
T ss_pred hHHHHHHCCCEEEcCCCCeEEEECCCCEEeCCcccCCCCHHHHHHHHHHHHH
Confidence 5889999986 678874 347776654444 3333344554443
No 37
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.34 E-value=1.5e-12 Score=136.04 Aligned_cols=96 Identities=25% Similarity=0.379 Sum_probs=79.0
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||+|+ ++|.+|.+++.+||+++|+++.++.. +.+++++|+||+||++++.+.+.. +++..+.+.
T Consensus 2 ~~v~ii-d~~~GN~~sl~~al~~~g~~v~vv~~------~~~l~~~d~iIlPG~g~~~~~~~~--------l~~~gl~~~ 66 (210)
T CHL00188 2 MKIGII-DYSMGNLHSVSRAIQQAGQQPCIINS------ESELAQVHALVLPGVGSFDLAMKK--------LEKKGLITP 66 (210)
T ss_pred cEEEEE-EcCCccHHHHHHHHHHcCCcEEEEcC------HHHhhhCCEEEECCCCchHHHHHH--------HHHCCHHHH
Confidence 578887 99999999999999999999987642 345788999999999998654422 455678889
Q ss_pred HHHHHHCCCceEEEEehhHHHHHh---------cCCCCCCc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNL---------LGWFSVST 782 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~e---------lGlLpg~~ 782 (875)
+++++++ ++|+||||+|+|+|++ +|+++|..
T Consensus 67 i~~~~~~-~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v 106 (210)
T CHL00188 67 IKKWIAE-GNPFIGICLGLHLLFETSEEGKEEGLGIYKGQV 106 (210)
T ss_pred HHHHHHc-CCCEEEECHHHHHHhhccccCCcCCccceeEEE
Confidence 9999984 9999999999999998 46676664
No 38
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.32 E-value=2e-12 Score=135.11 Aligned_cols=87 Identities=21% Similarity=0.376 Sum_probs=73.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+|+ ++|++|.+++.+|++.+|.++..+ .+..++.++|+||+||+.++.+.+.. ++...+.+.++
T Consensus 2 i~ii-dyg~gNl~s~~~al~~~~~~~~~~------~~~~~l~~~d~iIlPG~g~~~~~~~~--------l~~~gl~~~i~ 66 (210)
T PRK14004 2 IAIL-DYGMGNIHSCLKAVSLYTKDFVFT------SDPETIENSKALILPGDGHFDKAMEN--------LNSTGLRSTID 66 (210)
T ss_pred EEEE-ECCCchHHHHHHHHHHcCCeEEEE------CCHHHhccCCEEEECCCCchHHHHHH--------HHHcCcHHHHH
Confidence 5655 999999999999999999988764 23455789999999999998777743 45568999999
Q ss_pred HHHHCCCceEEEEehhHHHHHhc
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++++ ++|+||||+|+|+|++.
T Consensus 67 ~~~~~-~~pilGiC~G~Q~l~~~ 88 (210)
T PRK14004 67 KHVES-GKPLFGICIGFQILFES 88 (210)
T ss_pred HHHHc-CCCEEEECHhHHHHHHh
Confidence 99984 99999999999999984
No 39
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.31 E-value=2.8e-12 Score=133.87 Aligned_cols=94 Identities=18% Similarity=0.291 Sum_probs=72.6
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|||+|| ++|.+|..+..+||++.|+++.+.+. .++.+++++|+|||||+.++.+.+.. ++...+.+
T Consensus 1 ~~~~~ii-d~g~gn~~s~~~al~~~g~~~~v~~~----~~~~~l~~~d~lIlpG~~~~~~~~~~--------l~~~~~~~ 67 (209)
T PRK13146 1 MMTVAII-DYGSGNLRSAAKALERAGAGADVVVT----ADPDAVAAADRVVLPGVGAFADCMRG--------LRAVGLGE 67 (209)
T ss_pred CCeEEEE-ECCCChHHHHHHHHHHcCCCccEEEE----CCHHHhcCCCEEEECCCCcHHHHHHH--------HHHCCcHH
Confidence 4789976 99999999999999999995533332 23556899999999999998776543 22224566
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcC
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLG 776 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elG 776 (875)
.+.++....|+|+||||.|+|+|.+.+
T Consensus 68 ~~~~~~~~~~~PvlGiC~G~q~l~~~~ 94 (209)
T PRK13146 68 AVIEAVLAAGRPFLGICVGMQLLFERG 94 (209)
T ss_pred HHHHHHHhCCCcEEEECHHHHHHhhcc
Confidence 666665335999999999999999973
No 40
>TIGR01736 FGAM_synth_II phosphoribosylformylglycinamidine synthase II. Phosphoribosylformylglycinamidine synthase is a single, long polypeptide in most Proteobacteria and eukarotes. Three proteins are required in Bacillus subtilis and many other species. This is the longest of the three and is designated PurL, phosphoribosylformylglycinamidine synthase II, or FGAM synthase II.
Probab=99.28 E-value=1.9e-11 Score=148.58 Aligned_cols=118 Identities=13% Similarity=0.032 Sum_probs=89.2
Q ss_pred HHHHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhh
Q psy5570 438 KGKVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYF 512 (875)
Q Consensus 438 ~~~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~ 512 (875)
..+..++... ++ .|.|+||+++ ||+.++.||+ .++++|++ ||+...+..
T Consensus 230 ~~~~~~~~~~~l~~~~~v~a~~Dis~gGL~~~l~ema-~~s~~G~~------I~l~~iP~~------------------- 283 (715)
T TIGR01736 230 TEKLLIEATLEAVDTGLVKGIKDLGAAGLTSASSEMA-AKGGLGAE------IYLDKVPLR------------------- 283 (715)
T ss_pred HHHHHHHHHHHHhccCCEEEEEEcCCchHHHhHHHHh-ccCCcEEE------EEcccCccC-------------------
Confidence 3455566666 54 5899999995 9999999999 88899999 988755411
Q ss_pred hhcchhhhhhccccceee---EecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHH
Q psy5570 513 IVQRTKLCIVQRHEVGLA---FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLG 589 (875)
Q Consensus 513 ~~~~~~~~~LFsE~~G~v---v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~ 589 (875)
..+.++++.+|+|+.+.+ +.+++.+.+.++++. .++++..||+++.+ ..+.+..+|+.+.+.+++
T Consensus 284 ~~~~~~~e~~~se~qe~ll~~v~~~~~~~~~~~~~~------~g~~~~vIG~v~~~------~~~~v~~~g~~~~~~~~~ 351 (715)
T TIGR01736 284 EPGMTPYEIMLSESQERMLLVVAPEDVEEVLEIFEK------YELPASVIGEVTDE------GRIRLYYKGEVVADLPIE 351 (715)
T ss_pred CCCCCHHHHHHhcccceEEEEEChhhHHHHHHHHHH------cCCCEEEEEEEecC------CeEEEEECCceEEEeeHH
Confidence 112345677888874433 666778888888876 78899999999875 357888899988888888
Q ss_pred HHHH
Q psy5570 590 TLFL 593 (875)
Q Consensus 590 ~L~~ 593 (875)
.|..
T Consensus 352 ~l~~ 355 (715)
T TIGR01736 352 LLAD 355 (715)
T ss_pred HHcC
Confidence 8755
No 41
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=99.27 E-value=2.2e-11 Score=124.12 Aligned_cols=146 Identities=16% Similarity=0.187 Sum_probs=112.2
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec-----------------ccccccCccCccEEEEcCCcCcccc
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD-----------------LLENKITLDRFKGLVFPGGFSYADA 730 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d-----------------l~~~~~~l~~~d~lvlPGGfS~gD~ 730 (875)
+|++|+.++|++ +.|+ ...|+++|+++..++.+. ...++.+.++||+|++|||......
T Consensus 3 ~~i~i~~~~g~e-~~E~~~p~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipGG~~~~~~ 81 (188)
T COG0693 3 KKIAILLADGFE-DLELIVPYDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPGGDHGPEY 81 (188)
T ss_pred ceeEEEecCcce-ehhHhHHHHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECCCccchhh
Confidence 479999999999 5554 779999999998886541 1122333569999999999655666
Q ss_pred ccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcC-CCCCCcccc-------ccC----CCCeEEec--
Q psy5570 731 LGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG-WFSVSTQAR-------QPY----IKSRVRCP-- 796 (875)
Q Consensus 731 l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG-lLpg~~~t~-------~~n----~~~~f~~~-- 796 (875)
++. ++.+.+.+++|.++ |++|.+||+|.|+|.++| ++.|++.|. ..+ .+++|+++
T Consensus 82 ~~~----------~~~~~~~v~~~~~~-~k~vaaIC~g~~~L~~ag~ll~g~~~t~~~~~~~~~~~~~~~~ga~~vd~~~ 150 (188)
T COG0693 82 LRP----------DPDLLAFVRDFYAN-GKPVAAICHGPAVLAAAGLLLKGRKATAFPDIEEDVKNGDGKAGANYVDAPL 150 (188)
T ss_pred ccC----------cHHHHHHHHHHHHc-CCEEEEEChhHHHHhccccccCCceEeecCchHHHHHhHHHhcCceEecccc
Confidence 654 58899999999995 999999999999999999 999998766 344 45899999
Q ss_pred ---cEEeccCCceEEEeecceeecCHHHHHHHHhC
Q psy5570 797 ---PLKKEKSGVNITRLSITLNFSTSDTLSWLLDS 828 (875)
Q Consensus 797 ---~v~v~~~~~~~~r~pi~~~f~~~~~l~~l~~~ 828 (875)
.++++.+.+.+.+.|.++.-...+.+++|...
T Consensus 151 ~~~~vv~dg~~lvt~~~p~~~~~~~~~~~~~l~~~ 185 (188)
T COG0693 151 WTDEVVVDGNALVTGRNPASAPAFALELLKALGGA 185 (188)
T ss_pred CcCCEEEECCeEEEcCCcccHHHHHHHHHHHHhcc
Confidence 67776644788888888833334557766543
No 42
>PTZ00189 60S ribosomal protein L21; Provisional
Probab=99.26 E-value=6.2e-13 Score=131.17 Aligned_cols=74 Identities=53% Similarity=0.786 Sum_probs=67.6
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCCCcceEEEEE
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSVSRKTCLAQF 310 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk~~~s~laq~ 310 (875)
+++..|+++++.+++|+|+||||+.|||+||+|||++.+|+|++|++.|++++++|+ +|||.+|+||..++.++
T Consensus 32 ~~yk~GD~VdIk~d~svqkGMPhk~YHGkTG~V~nv~~~A~gViV~k~vg~ki~~Kri~vr~EHlk~sk~r~~fl~Rv 109 (160)
T PTZ00189 32 TTFKVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRVRGRIVRKRIHVRIEHVRKSRCREDFLKRV 109 (160)
T ss_pred HHccCCCEEEEEecCCeecCCCcccccCCCeEEEeecCeEEEEEEEEEECCEEeeeEEecCHhHcCCcCCHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999999998 67999999996665553
No 43
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.26 E-value=7.7e-12 Score=133.36 Aligned_cols=88 Identities=25% Similarity=0.406 Sum_probs=72.5
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|||+||.++|..++. .+||+++|+++..+.. ..++.++|+|||||||+. .+ ..+.++..+.+
T Consensus 1 ~m~igVLa~qG~~~e~--~~aL~~lG~ev~~v~~------~~~L~~~DgLILPGGfs~--~~-------~~L~~~~gl~~ 63 (248)
T PLN02832 1 MMAIGVLALQGSFNEH--IAALRRLGVEAVEVRK------PEQLEGVSGLIIPGGEST--TM-------AKLAERHNLFP 63 (248)
T ss_pred CcEEEEEeCCCchHHH--HHHHHHCCCcEEEeCC------HHHhccCCEEEeCCCHHH--HH-------HHHHhhcchHH
Confidence 4799999999998554 7999999999987653 346889999999998873 33 33445557999
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.|++|.+ +|+|+||||+|||+|++.
T Consensus 64 ~I~~~v~-~g~PvLGiC~GmqlLa~~ 88 (248)
T PLN02832 64 ALREFVK-SGKPVWGTCAGLIFLAER 88 (248)
T ss_pred HHHHHHH-cCCCEEEEChhHHHHHHH
Confidence 9999988 499999999999999986
No 44
>PLN00190 60S ribosomal protein L21; Provisional
Probab=99.26 E-value=1.2e-12 Score=128.93 Aligned_cols=75 Identities=48% Similarity=0.674 Sum_probs=68.5
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCCCcceEEEEEE
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSVSRKTCLAQFY 311 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk~~~s~laq~~ 311 (875)
+++..|+++++.+++|+|+||||+.|||+||+|||++.+|+|++|+|+|++|+++|+ +|||.+|+||.+||.++.
T Consensus 32 ~~yk~GD~VdIk~~~svqKGMPhk~YHGkTG~V~nv~~~A~gV~V~K~vggr~~~Kri~vriEHlk~sk~r~~Fl~Rvk 110 (158)
T PLN00190 32 RTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKRAVGVEVNKQVGNRIIRKRIHVRVEHVQPSRCREEFLLRKK 110 (158)
T ss_pred HHhcCCCEEEEEecCCeecCCCcccccCCCeEEEeecCcEEEEEEEEeeCCeEeeEEEEeCHHHccCccCHHHHHHHHH
Confidence 456779999999999999999999999999999999999999999999999999998 779999999977666643
No 45
>cd00396 PurM-like AIR (aminoimidazole ribonucleotide) synthase related protein. This family includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM (formylglycinamidine ribonucleotide) synthase and Selenophosphate synthetase (SelD). The N-terminal domain of AIR synthase forms the dimer interface of the protein, and is suggested as a putative ATP binding domain.
Probab=99.25 E-value=1.8e-11 Score=128.00 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=66.1
Q ss_pred EEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccccccc-Ccc-hhcccccccccc
Q psy5570 133 AATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK-NHG-IYDHLDRSQCLP 210 (875)
Q Consensus 133 ~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g-~P~-l~~a~~a~~~~~ 210 (875)
++++++..+.....|||.+++.||.++++|++++|+.++. +.+++++ +.. .++ ++++ .+|
T Consensus 2 l~~~~D~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~~-~~~~l~~------------~~~~~~~~~~~~-----~~G 63 (222)
T cd00396 2 LAMSTDGINPPLAINPWAGGRLAVGGAVNDIAAMGARPIA-LLASLSL------------SNGLEVDILEDV-----VDG 63 (222)
T ss_pred eEEEECCCCCCcCCCCccHHHHHHHHhHHHHHhcCCccHH-Hhhhecc------------CCCCCHHHHHHH-----HHH
Confidence 5788888888888999999999999999999999986543 6555554 212 223 7677 899
Q ss_pred hHHhhhhcCCcccCCCCCCCC
Q psy5570 211 IRYVDDNNKITEDYPMNPNGS 231 (875)
Q Consensus 211 l~d~~~~lgiP~i~gkdsm~~ 231 (875)
+.++|+++|+|+++|+.+++.
T Consensus 64 i~~~~~~~gi~ivgG~t~~~~ 84 (222)
T cd00396 64 VAEACNQLGVPIVGGHTSVSP 84 (222)
T ss_pred HHHHHHHcCCeEeceeeEEcc
Confidence 999999999999999998764
No 46
>cd02192 PurM-like3 AIR synthase (PurM) related protein, subgroup 3 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=99.25 E-value=8.1e-11 Score=128.28 Aligned_cols=90 Identities=10% Similarity=-0.110 Sum_probs=71.3
Q ss_pred cCceEEEEEecCCcEEEEEEecC-CCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccccccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIGE-QPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK 195 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~-~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g 195 (875)
+.|++|+++. ...++++++. .|.+...|||.+++.||+.++++|+|+|+.++ -+.+++++-
T Consensus 35 GdDaavi~~~---~~~lvit~D~~~~~~~~~~p~~~G~~av~~~vsDiaa~Ga~P~-~~~~~l~~p-------------- 96 (283)
T cd02192 35 GDDAAAIPDG---DGYLLLAADGIWPSLVEADPWWAGYCSVLVNVSDIAAMGGRPL-AMVDALWSP-------------- 96 (283)
T ss_pred CCCEEEEecC---CcEEEEEecccccccccCCHHHHHHHHHHHHHHHHHhcCCEee-eeeeeecCC--------------
Confidence 4699999643 4578888887 56677789999999999999999999998654 477777652
Q ss_pred Ccc-hhcccccccccchHHhhhhcCCcccCCCCCC
Q psy5570 196 NHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNPN 229 (875)
Q Consensus 196 ~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm 229 (875)
+++ +.+. ++||.++|+++|+|+|||.-+.
T Consensus 97 ~~e~l~~i-----~~Gi~~a~~~~gi~ivGGdt~~ 126 (283)
T cd02192 97 SAEAAAQV-----LEGMRDAAEKFGVPIVGGHTHP 126 (283)
T ss_pred CHHHHHHH-----HHHHHHHHHHcCCcEecccCCC
Confidence 233 4455 8999999999999999887543
No 47
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.24 E-value=1.6e-11 Score=127.15 Aligned_cols=87 Identities=21% Similarity=0.251 Sum_probs=70.9
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+| +++|..|.+++.++|++.|+++..+. ++.++.++|+|||||++|+.+.++. ++...+.+.++
T Consensus 2 i~i-id~g~~n~~~v~~~l~~~g~~~~~~~------~~~~l~~~d~lilPG~g~~~~~~~~--------l~~~~~~~~l~ 66 (201)
T PRK13152 2 IAL-IDYKAGNLNSVAKAFEKIGAINFIAK------NPKDLQKADKLLLPGVGSFKEAMKN--------LKELGFIEALK 66 (201)
T ss_pred EEE-EECCCCcHHHHHHHHHHCCCeEEEEC------CHHHHcCCCEEEECCCCchHHHHHH--------HHHcCcHHHHH
Confidence 555 59999999999999999999876643 2445788999999999999877654 44445677787
Q ss_pred HHH-HCCCceEEEEehhHHHHHhc
Q psy5570 753 KFI-ARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 753 ~f~-~r~g~~vLGICnGfQiL~el 775 (875)
+++ + .++|+||||.|+|+|.+.
T Consensus 67 ~~~~~-~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 67 EQVLV-QKKPILGICLGMQLFLER 89 (201)
T ss_pred HHHHh-CCCcEEEECHhHHHHhhc
Confidence 765 5 499999999999999986
No 48
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.22 E-value=1.7e-11 Score=126.92 Aligned_cols=87 Identities=20% Similarity=0.273 Sum_probs=72.3
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||+|| ++|++|..+++.+|+++|+++.++. .+.+++++|+|+||||+.++|.++ | ...+++.
T Consensus 1 ~~~~v~-~~~~~~~~~~~~~l~~~G~~~~~~~------~~~~~~~~d~iii~G~~~~~~~~~----~------~~~~~~~ 63 (200)
T PRK13143 1 MMIVII-DYGVGNLRSVSKALERAGAEVVITS------DPEEILDADGIVLPGVGAFGAAME----N------LSPLRDV 63 (200)
T ss_pred CeEEEE-ECCCccHHHHHHHHHHCCCeEEEEC------CHHHHccCCEEEECCCCCHHHHHH----H------HHHHHHH
Confidence 578887 8888889999999999999988764 134578999999999888777543 2 3467889
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++++++ |+|+||||+|+|+|.+.
T Consensus 64 i~~~~~~-~~PilgIC~G~q~l~~~ 87 (200)
T PRK13143 64 ILEAARS-GKPFLGICLGMQLLFES 87 (200)
T ss_pred HHHHHHc-CCCEEEECHHHHHHhhh
Confidence 9999984 99999999999999985
No 49
>PRK05731 thiamine monophosphate kinase; Provisional
Probab=99.20 E-value=5.5e-11 Score=131.20 Aligned_cols=94 Identities=11% Similarity=-0.103 Sum_probs=69.4
Q ss_pred cCceEEEEEecCCcEEEEEEec--CCCccc---ccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIG--EQPIKG---LVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGR 191 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G--~~p~~~---~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~ 191 (875)
+.|++|+++. +..++++|++ .++.+. ..|||.+++.||.+++++|+|+|+.++. +.+++..
T Consensus 25 gdDaavi~~~--~~~~lvit~D~~~~~~~~~~~~~~p~~~g~~av~~~~sDi~a~Ga~P~~-~~~~l~~----------- 90 (318)
T PRK05731 25 GDDAALLGPP--PGQRLVVSTDMLVEGVHFRPDWSSPEDLGYKALAVNLSDLAAMGARPAA-FLLALAL----------- 90 (318)
T ss_pred CCcEEEeccC--CCCeEEEEecccccccCcCCCCCCHHHHHHHHHHHHHHHHHHcCCCcce-EEEEEEc-----------
Confidence 3599999874 3557899987 455555 6899999999999999999999986553 5555433
Q ss_pred ccccCcchhcccccccccchHHhhhhcCCcccCCCCC
Q psy5570 192 FAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNP 228 (875)
Q Consensus 192 w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkds 228 (875)
+ ..+....+.+. ++||.++|+++|+|++||..+
T Consensus 91 -p-~~~~~~~l~~i--~~Gi~~~~~~~g~~ivGG~t~ 123 (318)
T PRK05731 91 -P-KDLDEAWLEAL--ADGLFELADRYGAELIGGDTT 123 (318)
T ss_pred -C-CCCCHHHHHHH--HHHHHHHHHHhCCeEECcccC
Confidence 1 11222223334 999999999999999998554
No 50
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.19 E-value=2.5e-11 Score=125.41 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=69.3
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|+|+|| ++|.+|..++.+||++.|+++.++. ++.+++++|+|||||++++.+.++. ++...+.+.
T Consensus 1 m~i~ii-d~g~gn~~s~~~~l~~~g~~~~~v~------~~~~~~~~d~iIlPG~G~~~~~~~~--------l~~~~l~~~ 65 (196)
T PRK13170 1 MNVVII-DTGCANLSSVKFAIERLGYEPVVSR------DPDVILAADKLFLPGVGTAQAAMDQ--------LRERELIDL 65 (196)
T ss_pred CeEEEE-eCCCchHHHHHHHHHHCCCeEEEEC------CHHHhCCCCEEEECCCCchHHHHHH--------HHHcChHHH
Confidence 688876 9999999999999999999888763 2445788999999999998777643 333455555
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++ .++|+||||.|+|+|.+.
T Consensus 66 i~~----~~~PilGIClG~Qll~~~ 86 (196)
T PRK13170 66 IKA----CTQPVLGICLGMQLLGER 86 (196)
T ss_pred HHH----cCCCEEEECHHHHHHhhh
Confidence 554 279999999999999985
No 51
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.18 E-value=5e-11 Score=139.79 Aligned_cols=98 Identities=24% Similarity=0.408 Sum_probs=82.0
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
+.++|+|+ ++|.+|..++.++|++.|+++..+.. +.+++++|+||||||+++++.|. .++...+.
T Consensus 5 ~~~~i~ii-DyG~GN~~sl~~al~~~G~~v~~v~~------~~~l~~~D~lIlpG~gs~~~~m~--------~L~~~gl~ 69 (538)
T PLN02617 5 ADSEVTLL-DYGAGNVRSVRNAIRHLGFTIKDVQT------PEDILNADRLIFPGVGAFGSAMD--------VLNNRGMA 69 (538)
T ss_pred CCCeEEEE-ECCCCCHHHHHHHHHHCCCeEEEECC------hhhhccCCEEEECCCCCHHHHHH--------HHHHcCHH
Confidence 45688876 99999999999999999999877542 45688999999999999988663 25556788
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHh----------cCCCCCCc
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNL----------LGWFSVST 782 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~e----------lGlLpg~~ 782 (875)
+.++++++ .|+|+||||.|+|||.+ +|+++|.+
T Consensus 70 ~~i~~~i~-~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v 112 (538)
T PLN02617 70 EALREYIQ-NDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVV 112 (538)
T ss_pred HHHHHHHH-cCCCEEEECHHHHHHhhhhhhcCCccCcccccceE
Confidence 99999998 49999999999999997 57777763
No 52
>KOG1732|consensus
Probab=99.17 E-value=1.1e-11 Score=122.92 Aligned_cols=65 Identities=52% Similarity=0.918 Sum_probs=63.2
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFN 422 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~ 422 (875)
|++++|+|++||++|+++||+||..|++.+|++|+.||+++|+++++++|||| .+|||++|++++
T Consensus 1 m~~~~g~~~~t~~~~~~~~~k~~~~~l~~y~~i~k~gdivdi~~~~~~~kg~p~k~y~gktgrvy~ 66 (160)
T KOG1732|consen 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGNGTVQKGMPHKCYHGKTGRVYN 66 (160)
T ss_pred CCcccCcccccceeecchhhhcCeeeeeeeeeeecccceeecccccchhcCCccccccccccceee
Confidence 78899999999999999999999999999999999999999999999999999 999999998876
No 53
>PRK01213 phosphoribosylformylglycinamidine synthase II; Provisional
Probab=99.17 E-value=1.6e-10 Score=140.76 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=88.1
Q ss_pred HHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhh
Q psy5570 440 KVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIV 514 (875)
Q Consensus 440 ~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~ 514 (875)
+..++... ++ .|.++||++. ||+.++.||+ .++++|++ |++...+.. ..
T Consensus 243 ~~l~~~~~~~~~~~~v~a~~D~g~gGL~~al~Ema-~~s~~G~~------I~ld~iP~~-------------------~~ 296 (724)
T PRK01213 243 KLLIEACLELIKTGLVVGIQDMGAAGLTCSSSEMA-AKGGLGIE------LDLDKVPLR-------------------EE 296 (724)
T ss_pred HHHHHHHHHHhccCCEEEEEECCCCcHHHhHHHHh-ccCCcEEE------EEccccccc-------------------CC
Confidence 34455544 44 6899999996 9999999999 88889999 887754311 11
Q ss_pred cchhhhhhccccceee---EecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHH
Q psy5570 515 QRTKLCIVQRHEVGLA---FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTL 591 (875)
Q Consensus 515 ~~~~~~~LFsE~~G~v---v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L 591 (875)
+.++++.+++|+.+.+ +.+++.+.+.++++. .++++..||+++.+ .++.+..+|+.+.+.+++.|
T Consensus 297 ~~~p~ei~~sesqerml~~v~~~~~~~~~~~~~~------~~~~~~vIG~vt~~------~~~~~~~~g~~v~d~~~~~l 364 (724)
T PRK01213 297 GMTPYEIMLSESQERMLLVVKPGKEEEVLAIFEK------WDLDAAVIGEVTDD------GRLRVYHHGEVVADVPAEAL 364 (724)
T ss_pred CCCHHHHHhccccceEEEEECHHHHHHHHHHHHH------cCCCEEEEEEEecC------CeEEEEECCeEEEEeEHHHh
Confidence 2356688888875443 667777888888876 78899999999876 46888889999988888888
Q ss_pred H
Q psy5570 592 F 592 (875)
Q Consensus 592 ~ 592 (875)
.
T Consensus 365 ~ 365 (724)
T PRK01213 365 A 365 (724)
T ss_pred c
Confidence 7
No 54
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.16 E-value=5e-11 Score=123.22 Aligned_cols=87 Identities=21% Similarity=0.362 Sum_probs=71.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+|| ++|++|..+..++|++.|++++++. +..+++++|+||+||++++++.++. ++..++.+.++
T Consensus 2 i~vi-d~g~gn~~~~~~~l~~~g~~v~~~~------~~~~l~~~d~lilpG~g~~~~~~~~--------l~~~~~~~~i~ 66 (199)
T PRK13181 2 IAII-DYGAGNLRSVANALKRLGVEAVVSS------DPEEIAGADKVILPGVGAFGQAMRS--------LRESGLDEALK 66 (199)
T ss_pred EEEE-eCCCChHHHHHHHHHHCCCcEEEEc------ChHHhccCCEEEECCCCCHHHHHHH--------HHHCChHHHHH
Confidence 5555 9999999999999999999988762 2445789999999999887654422 33456788999
Q ss_pred HHHHCCCceEEEEehhHHHHHhc
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~el 775 (875)
++++. |+|+||||.|+|+|.+.
T Consensus 67 ~~~~~-~~PvlGiC~G~Qll~~~ 88 (199)
T PRK13181 67 EHVEK-KQPVLGICLGMQLLFES 88 (199)
T ss_pred HHHHC-CCCEEEECHhHHHhhhh
Confidence 98884 99999999999999995
No 55
>TIGR01379 thiL thiamine-monophosphate kinase. Proteins scoring between the trusted and noise cutoff for this model include short forms from the Thermoplasmas (which lack the N-terminal region) and a highly derived form from Campylobacter jejuni. Eukaryotes lack this enzyme, and add pyrophosphate from ATP to unphosphorylated thiamine in a single step.
Probab=99.15 E-value=2.7e-10 Score=125.79 Aligned_cols=95 Identities=12% Similarity=-0.080 Sum_probs=68.8
Q ss_pred cCceEEEEEecCCcEEEEEEecCC----CcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQ----PIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRF 192 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~----p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w 192 (875)
+.|++|++++ ....+++|++.. ++....|||.+++.||.+++++|+|+|+.++. +.+++..
T Consensus 24 gdDaavi~~~--~~~~lvis~D~~~~~~~~~~~~~p~~~G~~av~~~~sDiaa~Ga~P~~-~~~~~~~------------ 88 (317)
T TIGR01379 24 GDDAALVSAP--EGRDLVLTTDTLVEGVHFPPDTTPEDLGWKAVAVNLSDLAAMGATPKW-FLLSLGL------------ 88 (317)
T ss_pred CCcEEEEecC--CCCeEEEEeccccCCcCCCCCCCHHHHHHHHHHHHHHHHHHcCCcccE-EEEEEEc------------
Confidence 4599999875 346789999854 44555699999999999999999999986553 5444322
Q ss_pred cccCcchhcccccccccchHHhhhhcCCcccCCCCCC
Q psy5570 193 AFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPN 229 (875)
Q Consensus 193 ~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm 229 (875)
|...+..+ +.+. ++||.++|+++|+|++||.-+.
T Consensus 89 P~~~~~~~-l~~i--~~Gi~~a~~~~g~~ivGG~t~~ 122 (317)
T TIGR01379 89 PSDLDEAW-LEAF--YDGLFECAKQYGVPLVGGDTVS 122 (317)
T ss_pred CCCCCHHH-HHHH--HHHHHHHHHHcCCeEECccCCC
Confidence 21112222 3333 9999999999999999985543
No 56
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.14 E-value=6.7e-11 Score=121.30 Aligned_cols=86 Identities=29% Similarity=0.431 Sum_probs=69.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHH
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQL 751 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v 751 (875)
||+|++.+|..++ ..++|+++|+++..++. +.+++++|+||||||++.. + ..+..+..+.+.|
T Consensus 1 ~igvl~~qg~~~e--~~~~l~~~g~~~~~v~~------~~~l~~~d~liipGG~~~~--~-------~~l~~~~~l~~~i 63 (184)
T TIGR03800 1 KIGVLALQGAVRE--HARALEALGVEGVEVKR------PEQLDEIDGLIIPGGESTT--L-------SRLLDKYGMFEPL 63 (184)
T ss_pred CEEEEEccCCHHH--HHHHHHHCCCEEEEECC------hHHhccCCEEEECCCCHHH--H-------HHHHHhccHHHHH
Confidence 5889999888744 77999999999988753 3458899999999986532 2 2233456788899
Q ss_pred HHHHHCCCceEEEEehhHHHHHhc
Q psy5570 752 NKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 752 ~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++.++ |+|++|||.|+|+|.+.
T Consensus 64 ~~~~~~-g~pilGIC~G~qlL~~~ 86 (184)
T TIGR03800 64 RNFILS-GLPVFGTCAGLIMLAKE 86 (184)
T ss_pred HHHHHc-CCcEEEECHHHHHHHhh
Confidence 999984 99999999999999997
No 57
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=99.14 E-value=2.2e-10 Score=120.04 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=102.1
Q ss_pred cCCCCCHHHH---HHHHHHcCCeeEEEEeec--------------------------------ccccccCccCccEEEEc
Q psy5570 678 EEGINGDREM---SAMAQVCGFEVWDITVQD--------------------------------LLENKITLDRFKGLVFP 722 (875)
Q Consensus 678 ~pG~n~~~e~---~~A~~~aG~~v~~V~~~d--------------------------------l~~~~~~l~~~d~lvlP 722 (875)
++|++ +.|+ +.+|+++|+++++++... +.-++.++++||+|+||
T Consensus 11 ~dg~E-~~El~~p~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviP 89 (213)
T cd03133 11 YDGSE-IHEAVLTLLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFP 89 (213)
T ss_pred CCCcc-HHHHHHHHHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEEC
Confidence 45564 5555 779999999999987620 11123346689999999
Q ss_pred CCcCccccccchhHHH---HHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccccc---------CCC
Q psy5570 723 GGFSYADALGSAKGWA---ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQP---------YIK 790 (875)
Q Consensus 723 GGfS~gD~l~~s~~~a---~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~---------n~~ 790 (875)
||++..+.+.. |. ..+..++.+.+.+++|.++ |||+.+||+|.++|.+++. .|++.|..+ |++
T Consensus 90 GG~~~~~~l~D---~~~~~~~~~~~~~l~~lv~~f~~~-gK~VaAIChgp~~L~~~~~-kGr~vT~~~~~~~~~~l~~aG 164 (213)
T cd03133 90 GGFGAAKNLSD---FAVKGADCTVNPEVERLVREFHQA-GKPIGAICIAPALAAKILG-EGVEVTIGNDAGTAAAIEKMG 164 (213)
T ss_pred CCCchhhhhhh---hcccccccccCHHHHHHHHHHHHC-CCeEEEECHHHHHHHHHhc-cCCeEEccCCHHHHHHHHHCC
Confidence 99886555411 10 1123467899999999995 9999999999999999755 888877755 457
Q ss_pred CeEEec---cEEecc-CCceEEEeecce--eecCHHHHHHHHh
Q psy5570 791 SRVRCP---PLKKEK-SGVNITRLSITL--NFSTSDTLSWLLD 827 (875)
Q Consensus 791 ~~f~~~---~v~v~~-~~~~~~r~pi~~--~f~~~~~l~~l~~ 827 (875)
+.|.++ .|+++. .++.|++.+..+ ++-.-+.++.|..
T Consensus 165 a~~~d~~~~~vvvd~dg~lITs~~~~~~~~~~~~~~~~~~~~~ 207 (213)
T cd03133 165 AEHVNCPVEEIVVDEKNKVVTTPAYMLADSIHEIADGIEKLVA 207 (213)
T ss_pred CEEEeCCCCeEEEECCCCEEeCccccCCCCHHHHHHhHHHHHH
Confidence 899875 667764 358899988888 5544445555543
No 58
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=99.12 E-value=3.6e-10 Score=112.53 Aligned_cols=129 Identities=18% Similarity=0.266 Sum_probs=95.4
Q ss_pred EEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec--c------------cccccCccCccEEEEcCCcCccccccch
Q psy5570 672 SIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD--L------------LENKITLDRFKGLVFPGGFSYADALGSA 734 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d--l------------~~~~~~l~~~d~lvlPGGfS~gD~l~~s 734 (875)
||+|++++|++ +.|+ ..+|+++|+++..++... + .-.+...++||+|++|||.. .+.
T Consensus 1 ~v~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~-~~~---- 74 (166)
T TIGR01382 1 KLLVLTTDEFE-DSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRA-PEY---- 74 (166)
T ss_pred CEEEEecCCch-HHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCC-HHH----
Confidence 58999999998 6555 678899999999987531 1 11122234699999999854 121
Q ss_pred hHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc-------ccCCCCeEEe-ccEEeccCCce
Q psy5570 735 KGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR-------QPYIKSRVRC-PPLKKEKSGVN 806 (875)
Q Consensus 735 ~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~-------~~n~~~~f~~-~~v~v~~~~~~ 806 (875)
+..++.+.+.++++.++ ++++.+||.|.++|.++|+|.|.+.|. +++.+.+|.+ +.++++.+ +.
T Consensus 75 ------~~~~~~l~~~l~~~~~~-~~~i~~ic~G~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~~~~v~dg~-ii 146 (166)
T TIGR01382 75 ------LRLNNKAVRLVREFVEK-GKPVAAICHGPQLLISAGVLRGKKLTSYPAIIDDVKNAGAEYVDIEVVVVDGN-LV 146 (166)
T ss_pred ------hccCHHHHHHHHHHHHc-CCEEEEEChHHHHHHhcCccCCCEEEcCccHHHHHHHCCCeEEcCCCEEEECC-EE
Confidence 22367899999999985 999999999999999999999998665 3333577877 56666764 77
Q ss_pred EEEeecce
Q psy5570 807 ITRLSITL 814 (875)
Q Consensus 807 ~~r~pi~~ 814 (875)
|.+-|-..
T Consensus 147 T~~~~~~~ 154 (166)
T TIGR01382 147 TSRVPDDL 154 (166)
T ss_pred EeCCcccH
Confidence 77776543
No 59
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.12 E-value=1.5e-10 Score=119.73 Aligned_cols=91 Identities=23% Similarity=0.333 Sum_probs=74.2
Q ss_pred eEEEEEecCCCCCHH--HHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 671 ISIAVLREEGINGDR--EMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~--e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
|||+|++.+|+++++ .+.++|++.|++++.+...+ ..++.++|+||||||.+. .. ..++.+..+.
T Consensus 1 ~~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~----~~~l~~~d~iii~GG~~~--~~-------~~~~~~~~~~ 67 (200)
T PRK13527 1 MKIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRR----PGDLPDCDALIIPGGEST--TI-------GRLMKREGIL 67 (200)
T ss_pred CEEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCC----hHHhccCCEEEECCCcHH--HH-------HHHHhhccHH
Confidence 689999999999997 77889999999888777642 345789999999999642 11 1233455789
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+.|+++++ .|+|+||||+|+|+|.+.
T Consensus 68 ~~i~~~~~-~~~pilGIC~G~Qll~~~ 93 (200)
T PRK13527 68 DEIKEKIE-EGLPILGTCAGLILLAKE 93 (200)
T ss_pred HHHHHHHH-CCCeEEEECHHHHHHHhh
Confidence 99999998 499999999999999996
No 60
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.10 E-value=1.8e-10 Score=118.87 Aligned_cols=89 Identities=21% Similarity=0.358 Sum_probs=74.0
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+|+..|..+|..++..+++..|++++.+... .+++++|+||||||+++.+.+.. +++..+++.|+
T Consensus 1 ~~~~~y~~~gN~~~l~~~~~~~G~~~~~~~~~------~~~~~~d~lilpGg~~~~~~~~~--------~~~~~~~~~i~ 66 (194)
T cd01750 1 IAVIRYPDISNFTDLDPLAREPGVDVRYVEVP------EGLGDADLIILPGSKDTIQDLAW--------LRKRGLAEAIK 66 (194)
T ss_pred CEeecCCCccCHHHHHHHHhcCCceEEEEeCC------CCCCCCCEEEECCCcchHHHHHH--------HHHcCHHHHHH
Confidence 46777888999999999999999999887643 23788999999999988765532 34567999999
Q ss_pred HHHHCCCceEEEEehhHHHHHhcC
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLLG 776 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~elG 776 (875)
+++++ |+|++|||+|+|+|.+.-
T Consensus 67 ~~~~~-g~pvlgiC~G~qlL~~~~ 89 (194)
T cd01750 67 NYARA-GGPVLGICGGYQMLGKYI 89 (194)
T ss_pred HHHHC-CCcEEEECHHHHHhhhhc
Confidence 99984 999999999999999854
No 61
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=99.06 E-value=9.3e-10 Score=109.49 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=93.4
Q ss_pred EEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEee-c--c---------cc----cccCccCccEEEEcCCcCcccccc
Q psy5570 672 SIAVLREEGINGDREM---SAMAQVCGFEVWDITVQ-D--L---------LE----NKITLDRFKGLVFPGGFSYADALG 732 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~-d--l---------~~----~~~~l~~~d~lvlPGGfS~gD~l~ 732 (875)
||+|++++|++ +.|+ ..+|+++|+++.+++.. . + .. ++....+||+|++|||.. .+.+.
T Consensus 1 ~v~il~~~gf~-~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~-~~~~~ 78 (165)
T cd03134 1 KVAILAADGFE-DVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTN-PDKLR 78 (165)
T ss_pred CEEEEcCCCch-HHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCC-hhhhc
Confidence 58999999999 6555 66788999999998754 2 1 00 111224689999999973 23332
Q ss_pred chhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccccc-------CCCCeEEeccEEeccCCc
Q psy5570 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQP-------YIKSRVRCPPLKKEKSGV 805 (875)
Q Consensus 733 ~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~-------n~~~~f~~~~v~v~~~~~ 805 (875)
.++.+.+.|+++.++ ++++.+||+|.++|.++|+|+|.+.|.-+ .....+.++.++++.+ +
T Consensus 79 ----------~~~~~~~~l~~~~~~-~~~i~~ic~G~~~La~aglL~g~~~T~h~~~~~~~~~~~~~~~~~~~v~dg~-i 146 (165)
T cd03134 79 ----------RDPDAVAFVRAFAEA-GKPVAAICHGPWVLISAGVVRGRKLTSYPSIKDDLINAGANWVDEEVVVDGN-L 146 (165)
T ss_pred ----------cCHHHHHHHHHHHHc-CCeEEEEchHHHHHHhcCccCCCEeeCCHhHHHHHHHcCCeEecCCEEEECC-E
Confidence 367899999999985 99999999999999999999999765522 2246677777777764 5
Q ss_pred eEEEeec
Q psy5570 806 NITRLSI 812 (875)
Q Consensus 806 ~~~r~pi 812 (875)
.|.+-|-
T Consensus 147 iT~~~~~ 153 (165)
T cd03134 147 ITSRNPD 153 (165)
T ss_pred EEecCcc
Confidence 5655543
No 62
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.04 E-value=3.1e-10 Score=117.06 Aligned_cols=85 Identities=24% Similarity=0.299 Sum_probs=69.5
Q ss_pred EecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHH
Q psy5570 676 LREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755 (875)
Q Consensus 676 lv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~ 755 (875)
+++.|++|..+++++|++.|++++++.. +.+++++|+|||||+.++.+.++ .+....+.+.++++.
T Consensus 3 i~d~g~~~~~~~~~~l~~~g~~v~v~~~------~~~l~~~d~iiipG~~~~~~~~~--------~~~~~~~~~~i~~~~ 68 (198)
T cd01748 3 IIDYGMGNLRSVANALERLGAEVIITSD------PEEILSADKLILPGVGAFGDAMA--------NLRERGLIEALKEAI 68 (198)
T ss_pred EEeCCCChHHHHHHHHHHCCCeEEEEcC------hHHhccCCEEEECCCCcHHHHHH--------HHHHcChHHHHHHHH
Confidence 4599999999999999999999988653 33578999999999876544321 134556788999999
Q ss_pred HCCCceEEEEehhHHHHHhc
Q psy5570 756 ARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 756 ~r~g~~vLGICnGfQiL~el 775 (875)
++ |+|+||||.|+|+|.+.
T Consensus 69 ~~-~~pilGiC~G~q~l~~~ 87 (198)
T cd01748 69 AS-GKPFLGICLGMQLLFES 87 (198)
T ss_pred HC-CCcEEEECHHHHHhccc
Confidence 85 99999999999999996
No 63
>cd02194 ThiL ThiL (Thiamine-monophosphate kinase) plays a dual role in de novo biosynthesis and in salvage of exogenous thiamine. Thiamine salvage occurs in two steps, with thiamine kinase catalyzing the formation of thiamine phosphate, and ThiL catalyzing the conversion of this intermediate to thiamine pyrophosphate. The N-terminal domain of ThiL binds ATP and is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, FGAM synthase and selenophosphate synthetase (SelD).
Probab=99.04 E-value=1.3e-09 Score=118.76 Aligned_cols=92 Identities=12% Similarity=-0.061 Sum_probs=70.7
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCc----ccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPI----KGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRF 192 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~----~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w 192 (875)
+.|++|++. ....+++|++..+. ...+|||..++.||.+++++|+|+|+.++ .+.+++++.
T Consensus 24 gdDaavi~~---~~~~lv~t~D~~~~~~~f~~~~~p~~~G~~av~~~~sDi~a~Ga~P~-~~~~~l~~p----------- 88 (291)
T cd02194 24 GDDAAVLKP---PGGRLVVTTDTLVEGVHFPPDTTPEDIGWKALAVNLSDLAAMGARPL-GFLLSLGLP----------- 88 (291)
T ss_pred CCCEEEecC---CCCeEEEEecccccccCCCCCCCHHHHHHHHHHHHHHHHHHcCCccc-eeEEEEECC-----------
Confidence 459999872 35678999997763 23459999999999999999999998555 488888763
Q ss_pred ccc-Ccc-hhcccccccccchHHhhhhcCCcccCCCCCC
Q psy5570 193 AFK-NHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNPN 229 (875)
Q Consensus 193 ~~g-~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm 229 (875)
.. .++ +.+. ++||.++|+++|+|+|||..+.
T Consensus 89 -~~~~~~~l~~i-----~~Gi~~a~~~~g~~liGGdt~~ 121 (291)
T cd02194 89 -PDTDEEWLEEF-----YRGLAEAADRYGVPLVGGDTTS 121 (291)
T ss_pred -CCCCHHHHHHH-----HHHHHHHHHHcCCeEEcccCCC
Confidence 01 122 4344 9999999999999999986654
No 64
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=99.04 E-value=1.4e-09 Score=110.21 Aligned_cols=129 Identities=19% Similarity=0.235 Sum_probs=95.4
Q ss_pred EEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeecc-----c---------------cc----------ccCccCccE
Q psy5570 672 SIAVLREEGINGDREM---SAMAQVCGFEVWDITVQDL-----L---------------EN----------KITLDRFKG 718 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~dl-----~---------------~~----------~~~l~~~d~ 718 (875)
||+|++++|+. +.|+ ..+|+++|+++.+++.+-- . .+ +....+||+
T Consensus 1 kv~il~~~g~~-~~e~~~p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~D~ 79 (180)
T cd03169 1 KILILTGDFVE-DYEVMVPFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVDPDDYDA 79 (180)
T ss_pred CEEEEeCCCcc-HHHHHHHHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCCHhHCCE
Confidence 68999999997 6555 6789999999999975410 0 01 112337899
Q ss_pred EEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccccc-------CCCC
Q psy5570 719 LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQP-------YIKS 791 (875)
Q Consensus 719 lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~-------n~~~ 791 (875)
|++|||... +.+ ..++.+.+.|++++++ +++++|||+|.|+|.++|+|.|.+.|.-+ +.+.
T Consensus 80 liv~GG~~~-~~~----------~~~~~~~~~l~~~~~~-~k~i~~ic~G~~~La~agll~g~~~T~h~~~~~~~~~~~~ 147 (180)
T cd03169 80 LVIPGGRAP-EYL----------RLDEKVLAIVRHFAEA-NKPVAAICHGPQILAAAGVLKGRRCTAYPACKPEVELAGG 147 (180)
T ss_pred EEEcCCCCh-hhh----------ccCHHHHHHHHHHHHc-CCEEEEECcHHHHHHHcCccCCCEEecccchHHHHHHCCC
Confidence 999999642 222 2367789999999985 99999999999999999999999866633 3345
Q ss_pred eEEeccEEeccCCceEEEeecce
Q psy5570 792 RVRCPPLKKEKSGVNITRLSITL 814 (875)
Q Consensus 792 ~f~~~~v~v~~~~~~~~r~pi~~ 814 (875)
++..+.++++++ +.|.+-|-+.
T Consensus 148 ~~~~~~~v~D~~-iiT~~~~~~~ 169 (180)
T cd03169 148 TVVDDGVVVDGN-LVTAQAWPDH 169 (180)
T ss_pred EEeeccEEEECC-EEEecCCchH
Confidence 577777777765 7777777653
No 65
>COG0207 ThyA Thymidylate synthase [Nucleotide transport and metabolism]
Probab=99.03 E-value=1.6e-10 Score=122.97 Aligned_cols=50 Identities=72% Similarity=1.063 Sum_probs=49.2
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
|+++.||+|++|+|+|.++||||||+||.|||++|||+|++|+||.|++.
T Consensus 150 C~~l~qF~V~~gkL~~~lyqRS~Di~lg~pfNi~syalL~~mvA~~~Gle 199 (268)
T COG0207 150 CHILFQFYVRDGKLSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLE 199 (268)
T ss_pred cEEEEEEEEECCEEEEEEEEecccccccccHHHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999987
No 66
>PF01157 Ribosomal_L21e: Ribosomal protein L21e; InterPro: IPR001147 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L21E family contains proteins from a number of eukaryotic and archaebacterial organisms which include; mammalian L2, Entamoeba histolytica L21, Caenorhabditis elegans L21 (C14B9.7), Saccharomyces cerevisiae (Baker's yeast) L21E (URP1) and Haloarcula marismortui HL31.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_U 1S1I_Q 3O58_T 3IZS_U 3O5H_T 1Q82_R 1KQS_P 3CCJ_Q 3CCQ_Q 1VQ5_Q ....
Probab=99.03 E-value=7.9e-11 Score=108.67 Aligned_cols=65 Identities=48% Similarity=0.658 Sum_probs=49.9
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCC
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSV 301 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk 301 (875)
+.+..++++++.+++++|+||||+.|||+||+|+||++.+.|+.+++.|++++.+|. .|||.+||
T Consensus 31 ~~yk~GD~V~I~id~sv~kGmPh~~yHGkTG~V~~v~~~~~G~~~~~~v~~~~~~K~i~vr~eHlk~sK 99 (99)
T PF01157_consen 31 QEYKVGDKVDIKIDPSVHKGMPHKRYHGKTGRVFNVTKGARGVAYNKQVKDRIKEKRIIVRPEHLKPSK 99 (99)
T ss_dssp ----TT-EEEE---TTSSSSS--GGGTTEEEEEEEE-SSCEEEEEEEECSSSCEEEEEEEEGGGEEE-S
T ss_pred HHccCCCEEEEEecCccccCCCcceECCCceeEEEeCCCceEEEEEEEecCCcccEEEEECHHHcccCC
Confidence 456779999999999999999999999999999999999999999999999999888 56888876
No 67
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.01 E-value=4.1e-10 Score=115.92 Aligned_cols=87 Identities=34% Similarity=0.536 Sum_probs=68.2
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|||.|++..|.. .+...+|+.+|+++..+.. +.+++++|+||||||.+. .++ .+..+..+.+
T Consensus 1 ~m~~~i~~~~g~~--~~~~~~l~~~g~~~~~~~~------~~~l~~~dgiii~GG~~~--~~~-------~~~~~~~~~~ 63 (189)
T PRK13525 1 MMKIGVLALQGAV--REHLAALEALGAEAVEVRR------PEDLDEIDGLILPGGEST--TMG-------KLLRDFGLLE 63 (189)
T ss_pred CCEEEEEEcccCH--HHHHHHHHHCCCEEEEeCC------hhHhccCCEEEECCCChH--HHH-------HHHHhccHHH
Confidence 4799999887666 4557889999999988753 346889999999999642 111 1233556788
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.++++.++ |+|+||||.|+|+|.+
T Consensus 64 ~i~~~~~~-g~PilGIC~G~QlL~~ 87 (189)
T PRK13525 64 PLREFIAS-GLPVFGTCAGMILLAK 87 (189)
T ss_pred HHHHHHHC-CCeEEEECHHHHHHHh
Confidence 99999985 9999999999999998
No 68
>cd02196 PurM PurM (Aminoimidazole Ribonucleotide [AIR] synthetase), one of eleven enzymes required for purine biosynthesis, catalyzes the conversion of formylglycinamide ribonucleotide (FGAM) and ATP to AIR, ADP, and Pi, the fifth step in de novo purine biosynthesis. The N-terminal domain of PurM is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=99.01 E-value=1.5e-09 Score=119.04 Aligned_cols=95 Identities=7% Similarity=-0.174 Sum_probs=73.2
Q ss_pred CCcCceEEEEEecCC--cEEEEEEecCCCcccccCH-----HHHHHHHHHHHHhhccccCCcccccceeccccccccccC
Q psy5570 115 TPLADVAVVALVHND--LRGAATSIGEQPIKGLVDP-----KRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYS 187 (875)
Q Consensus 115 ~p~sDaaV~~~~~~~--~~g~ams~G~~p~~~~~dP-----y~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~ 187 (875)
.++.||+++++..++ ...++++++.-+......| +.-++.||++++++|+|+|+.+. -+.+++++-
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~D~~~~~~~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~-~~~~~l~~~------ 74 (297)
T cd02196 2 GIGGFAGLFDLGLGGYKDPVLVSGTDGVGTKLKLAQEMGKHDTIGIDLVAMCVNDILCQGAEPL-FFLDYIATG------ 74 (297)
T ss_pred CCCceeEEEeccccCCCCcEEEEecCCcchHHHHHHHcCCHhHHHHHHHHHhHHHHHHcCCEeH-HHHhhhhcC------
Confidence 367899999986322 5678888887766666654 67799999999999999998554 477788762
Q ss_pred CcccccccCcc-hhcccccccccchHHhhhhcCCcccCCCC
Q psy5570 188 FSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMN 227 (875)
Q Consensus 188 ~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkd 227 (875)
..+++ ++++ .+||.++|+++|+|++||.=
T Consensus 75 ------~~~~~~l~~~-----~~Gi~~~~~~~gi~ivGGdt 104 (297)
T cd02196 75 ------KLDPEVAAEI-----VKGIAEGCRQAGCALLGGET 104 (297)
T ss_pred ------CCCHHHHHHH-----HHHHHHHHHHcCCeEeeecc
Confidence 12333 7776 89999999999999998753
No 69
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.99 E-value=1e-09 Score=116.42 Aligned_cols=115 Identities=12% Similarity=0.091 Sum_probs=88.1
Q ss_pred HHHHHHcCCeeEEEEeec------------------------------------ccccccCccCccEEEEcCCcCccccc
Q psy5570 688 SAMAQVCGFEVWDITVQD------------------------------------LLENKITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 688 ~~A~~~aG~~v~~V~~~d------------------------------------l~~~~~~l~~~d~lvlPGGfS~gD~l 731 (875)
+..|+++|++|++++... +.-++.++++||+|+||||...-..+
T Consensus 31 ~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~g~~~dl 110 (231)
T cd03147 31 FNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGHGTLFDF 110 (231)
T ss_pred HHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCCchhhhc
Confidence 678899999999887531 11123456799999999997532223
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc-------CCCCCCccccccCC---------------
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL-------GWFSVSTQARQPYI--------------- 789 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el-------GlLpg~~~t~~~n~--------------- 789 (875)
. .++.+.+.+++|.++ |||+.+||+|.++|+++ +++.|++.|..++.
T Consensus 111 ~----------~~~~l~~ll~~f~~~-gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~~~~ee~~~~~~~~~~~~~ 179 (231)
T cd03147 111 P----------HATNLQKIAQQIYAN-GGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGFTDKGEEIMGVMEILKKRN 179 (231)
T ss_pred c----------cCHHHHHHHHHHHHc-CCEEEEEChHHHHHHhhhcccCCCcccCCCEEEeeCcHHHHhhhhhhhhcccC
Confidence 3 378899999999995 99999999999999998 99999998887753
Q ss_pred -----------CCeEEec------cEEeccCCceEEEeecce
Q psy5570 790 -----------KSRVRCP------PLKKEKSGVNITRLSITL 814 (875)
Q Consensus 790 -----------~~~f~~~------~v~v~~~~~~~~r~pi~~ 814 (875)
+++|... .|++|.+ +.|.|-|-+-
T Consensus 180 ~~~~e~~l~~~Ga~~~~~~~~~~~~VvvDgn-LITgq~p~sa 220 (231)
T cd03147 180 LESIEDIAERAGANFIRPPGPWDDFTVVDGR-IVTGSNPASA 220 (231)
T ss_pred CccHHHHHHHcCCEEEccCCCCCCcEEEcCC-EEeCCCcccH
Confidence 4678744 3777775 8888887655
No 70
>KOG0623|consensus
Probab=98.99 E-value=9.6e-10 Score=118.80 Aligned_cols=95 Identities=24% Similarity=0.360 Sum_probs=84.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|.-++++|.+|.+++.+|++..||++.+|- .+.++..+|.|||||++.||-.++. |.+..+.+.++
T Consensus 3 vv~~ld~~agn~~si~nal~hlg~~i~~v~------~P~DI~~a~rLIfPGVGnfg~~~D~--------L~~~Gf~eplr 68 (541)
T KOG0623|consen 3 VVTLLDYGAGNVRSIRNALRHLGFSIKDVQ------TPGDILNADRLIFPGVGNFGPAMDV--------LNRTGFAEPLR 68 (541)
T ss_pred eEEEEecCCccHHHHHHHHHhcCceeeecc------CchhhccCceEeecCcccchHHHHH--------HhhhhhHHHHH
Confidence 455669999999999999999999998863 4667999999999999999988876 77889999999
Q ss_pred HHHHCCCceEEEEehhHHHHHh----------cCCCCCCc
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNL----------LGWFSVST 782 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~e----------lGlLpg~~ 782 (875)
++++ .|+|++|||.|.|+|++ +|.+||..
T Consensus 69 ~Yie-sgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v 107 (541)
T KOG0623|consen 69 KYIE-SGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIV 107 (541)
T ss_pred HHHh-cCCCeEeehhhHHHHhcccccCCCcCcccccccce
Confidence 9999 49999999999999998 67788764
No 71
>cd02195 SelD Selenophosphate synthetase (SelD) catalyzes the conversion of selenium to selenophosphate which is required by a number of bacterial, archaeal and eukaryotic organisms for synthesis of Secys-tRNA, the precursor of selenocysteine in selenoenzymes. The N-terminal domain of SelD is related to the ATP-binding domains of hydrogen expression/formation protein HypE, the AIR synthases, and FGAM synthase and is thought to bind ATP.
Probab=98.96 E-value=1.4e-09 Score=118.67 Aligned_cols=96 Identities=14% Similarity=-0.178 Sum_probs=72.7
Q ss_pred CcCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccccccc
Q psy5570 116 PLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK 195 (875)
Q Consensus 116 p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g 195 (875)
++.|++|++++ ....+++|++..|... .+||..++.||.+++++|+++|+. +.-+.+++++. . ..
T Consensus 40 ~gdDaavi~~~--~~~~lv~stD~~~~~~-~~p~~~G~~av~~~~sDiaa~Ga~-P~~~~~~l~lp----------~-~~ 104 (287)
T cd02195 40 TGDDAAVYRLP--GGLALVQTTDFFPPIV-DDPYLFGRIAAANALSDIYAMGAK-PLSALAIVTLP----------R-KL 104 (287)
T ss_pred CCCcEEEEEeC--CCcEEEEEecCCCCCC-CCHHHHHHHHHHHHHHHHHhcCch-HHHHHHHhcCC----------C-cc
Confidence 45699999875 2457899999888755 799999999999999999999985 44477777763 0 01
Q ss_pred Cc-chhcccccccccchHHhhhhcCCcccCCCCC
Q psy5570 196 NH-GIYDHLDRSQCLPIRYVDDNNKITEDYPMNP 228 (875)
Q Consensus 196 ~P-~l~~a~~a~~~~~l~d~~~~lgiP~i~gkds 228 (875)
.| ..+++.+. .+||.++|+++|+|++||.-+
T Consensus 105 ~~~~~~~l~~~--~~Gi~~~~~~~g~~ivGGdt~ 136 (287)
T cd02195 105 PALQEEVLREI--LAGGKDKLREAGAVLVGGHTI 136 (287)
T ss_pred chhhHHHHHHH--HHHHHHHHHHcCCcEEeeeec
Confidence 12 12333333 999999999999999987643
No 72
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.96 E-value=1.4e-09 Score=112.60 Aligned_cols=88 Identities=20% Similarity=0.279 Sum_probs=64.4
Q ss_pred EEEecCCCCCH-HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 674 AVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 674 aIlv~pG~n~~-~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
||..++=++=- .|...+|+++|+++..+... ....+.++|+||||||++. ..+ ..+.++..+.+.|+
T Consensus 2 aia~d~aF~f~y~e~~~~l~~~G~~v~~~s~~----~~~~l~~~D~lilPGG~~~-~~~-------~~L~~~~~~~~~i~ 69 (198)
T cd03130 2 AVARDEAFNFYYPENLELLEAAGAELVPFSPL----KDEELPDADGLYLGGGYPE-LFA-------EELSANQSMRESIR 69 (198)
T ss_pred EEEecCccccccHHHHHHHHHCCCEEEEECCC----CCCCCCCCCEEEECCCchH-HHH-------HHHHhhHHHHHHHH
Confidence 44444444433 46788999999998876531 1234667999999998653 112 33445678999999
Q ss_pred HHHHCCCceEEEEehhHHHHHh
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~e 774 (875)
+|.++ |+|++|||.|+|+|.+
T Consensus 70 ~~~~~-g~pilgICgG~qlL~~ 90 (198)
T cd03130 70 AFAES-GGPIYAECGGLMYLGE 90 (198)
T ss_pred HHHHc-CCCEEEEcccHHHHHH
Confidence 99984 9999999999999998
No 73
>PRK04155 chaperone protein HchA; Provisional
Probab=98.96 E-value=3.3e-09 Score=115.88 Aligned_cols=115 Identities=15% Similarity=0.172 Sum_probs=88.1
Q ss_pred HHHHHHcCCeeEEEEeeccc--------------------------c-----c----ccC--ccCccEEEEcCCcCcccc
Q psy5570 688 SAMAQVCGFEVWDITVQDLL--------------------------E-----N----KIT--LDRFKGLVFPGGFSYADA 730 (875)
Q Consensus 688 ~~A~~~aG~~v~~V~~~dl~--------------------------~-----~----~~~--l~~~d~lvlPGGfS~gD~ 730 (875)
...|+++|++|++++.+.-. . + +.. .++||+|+||||...-..
T Consensus 83 ~~~L~~AG~eVdiAS~~G~~~~~d~~s~~~~d~~v~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYDaV~iPGG~g~~~d 162 (287)
T PRK04155 83 MYHLHKAGFEFDVATLSGNPVKFEYWAMPHEDEAVMGFYEKYKSKFKQPKKLADVVANLLAPDSDYAAVFIPGGHGALIG 162 (287)
T ss_pred HHHHHHCCCEEEEEecCCCccccccccccccchhHHHHHHHhhhhccCceeHHHhhhhhcCCcccccEEEECCCCchHHH
Confidence 77999999999999863100 0 0 111 579999999999653333
Q ss_pred ccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcC------CCCCCccccccCC---------------
Q psy5570 731 LGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG------WFSVSTQARQPYI--------------- 789 (875)
Q Consensus 731 l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG------lLpg~~~t~~~n~--------------- 789 (875)
++ .++.+.+.+++|.++ ||+|.+||+|.++|..+| ++.|.+.|..++.
T Consensus 163 L~----------~~~~l~~ll~~~~~~-~K~VaAICHGPa~Ll~a~~~~g~~ll~GkkvT~fp~~~e~~~~~~~~~~~~~ 231 (287)
T PRK04155 163 LP----------ESEDVAAALQWALDN-DRFIITLCHGPAALLAAGVDHGDNPLNGYSICAFPDALDKQTPEIGYMPGHL 231 (287)
T ss_pred Hh----------hCHHHHHHHHHHHHc-CCEEEEEChHHHHHHHcCCcCCCcccCCCEEeeCCCHHHhhccccccccccc
Confidence 43 478899999999984 999999999999999999 9999998876653
Q ss_pred -----------CCeEEe----ccEEeccCCceEEEeecce
Q psy5570 790 -----------KSRVRC----PPLKKEKSGVNITRLSITL 814 (875)
Q Consensus 790 -----------~~~f~~----~~v~v~~~~~~~~r~pi~~ 814 (875)
++.|+. ..|++|.+ +.|.+-|-+-
T Consensus 232 ~~~~e~~L~~~Ga~~~~~~~~~~VvvDg~-LITGq~P~sa 270 (287)
T PRK04155 232 TWLFGEELKKMGVNIVNDDITGRVHKDRK-LLTGDSPLAS 270 (287)
T ss_pred cchHHHHHHHcCCEEEcCCCCCCEEEeCC-EEeCCChhHH
Confidence 346766 46777775 7888888766
No 74
>TIGR02124 hypE hydrogenase expression/formation protein HypE. This family contains HypE (or HupE), a protein required for expression of catalytically active hydrogenase in many systems. It appears to be an accessory protein involved in maturation rather than a regulatory protein involved in expression. HypE shows considerable homology to the thiamine-monophosphate kinase ThiL (TIGR01379) and other enzymes.
Probab=98.96 E-value=3.8e-09 Score=116.95 Aligned_cols=91 Identities=15% Similarity=0.019 Sum_probs=66.8
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHH-----HHHHHHHHHHHhhccccCCcccccceeccccccccccCCccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPK-----RGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGR 191 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy-----~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~ 191 (875)
+.||+|++++ ...++++++.. ..||| ..++.||+.++++|+|+|+.+. -+.++++.
T Consensus 21 gdDaavi~~~---~~~lv~ttD~~----~~~p~~~~~~~iG~~av~~n~sDiaamGa~P~-~~~~~l~l----------- 81 (320)
T TIGR02124 21 MEDAAVLELS---GGRLAFSTDSF----VVDPLFFPGGDIGKLAVCGTVNDVAVSGAKPL-YLSCGFIL----------- 81 (320)
T ss_pred CCceEEEeeC---CCeEEEEecCC----ccCCcccCcccHHHHHHHHHHHHHHHcCCcch-hhEEEEEc-----------
Confidence 4599999874 24588888854 23554 4799999999999999998655 47777764
Q ss_pred ccccCcchhcccccccccchHHhhhhcCCcccCCCCCCC
Q psy5570 192 FAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNG 230 (875)
Q Consensus 192 w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~ 230 (875)
+.+.|. .++.+. ++||.++|+++|+|+|||.-+++
T Consensus 82 -p~~~~~-~~l~~~--~~Gi~~a~~~~gi~ivGGdt~~~ 116 (320)
T TIGR02124 82 -EEGFPI-EDLERI--VKSMAEAARKAGVKIVTGDTKVV 116 (320)
T ss_pred -CCCCCH-HHHHHH--HHHHHHHHHHcCCEEEeeeeEEc
Confidence 223332 222233 99999999999999999988664
No 75
>KOG0673|consensus
Probab=98.96 E-value=5e-10 Score=115.64 Aligned_cols=50 Identities=76% Similarity=1.209 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||+|.||||..|+|||.++|||.||.||+|||+..|++|+.|+|.+|+|.
T Consensus 175 CH~~~QFyV~~GelScq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~ 224 (293)
T KOG0673|consen 175 CHTFCQFYVANGELSCQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLK 224 (293)
T ss_pred cceeeEEEecCCeeeehhhhhccccccCccchhHHHHHHHHHHHHHhCCC
Confidence 89999999999999999999999999999999999999999999999976
No 76
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=98.93 E-value=1.9e-09 Score=111.93 Aligned_cols=87 Identities=22% Similarity=0.351 Sum_probs=69.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+|+ +.|..+...++++|++.|.++.++.. +.+++++|+||+|||.++.|.+.. +..+++.+.++
T Consensus 2 i~~~-d~~~~~~~~i~~~l~~~G~~v~~~~~------~~~l~~~d~iiipG~~~~~~~~~~--------~~~~~~~~~i~ 66 (205)
T PRK13141 2 IAII-DYGMGNLRSVEKALERLGAEAVITSD------PEEILAADGVILPGVGAFPDAMAN--------LRERGLDEVIK 66 (205)
T ss_pred EEEE-EcCCchHHHHHHHHHHCCCeEEEECC------HHHhccCCEEEECCCCchHHHHHH--------HHHcChHHHHH
Confidence 5555 77777789999999999999988642 346789999999999887665422 22446788899
Q ss_pred HHHHCCCceEEEEehhHHHHHhc
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++++ ++|+||||+|+|+|.+.
T Consensus 67 ~~~~~-~~pvlGIC~G~Qll~~~ 88 (205)
T PRK13141 67 EAVAS-GKPLLGICLGMQLLFES 88 (205)
T ss_pred HHHHC-CCcEEEECHHHHHhhhc
Confidence 98884 89999999999999985
No 77
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=98.89 E-value=1.9e-09 Score=111.44 Aligned_cols=85 Identities=18% Similarity=0.239 Sum_probs=66.7
Q ss_pred EEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHH-HH
Q psy5570 675 VLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQL-NK 753 (875)
Q Consensus 675 Ilv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v-~~ 753 (875)
+++++|.+|...++.+|+..|.++.++.. +.+++++|+||+||+.++.+.++. ++... .+.+ ++
T Consensus 2 ~~~~~~~gn~~~l~~~l~~~g~~v~v~~~------~~~l~~~d~lii~G~~~~~~~~~~--------l~~~~-~~~l~~~ 66 (196)
T TIGR01855 2 VIIDYGVGNLGSVKRALKRVGAEPVVVKD------SKEAELADKLILPGVGAFGAAMAR--------LRENG-LDLFVEL 66 (196)
T ss_pred EEEecCCcHHHHHHHHHHHCCCcEEEEcC------HHHhccCCEEEECCCCCHHHHHHH--------HHHcC-cHHHHHH
Confidence 35699999999999999999999888652 335789999999998887664422 22223 3444 77
Q ss_pred HHHCCCceEEEEehhHHHHHhc
Q psy5570 754 FIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 754 f~~r~g~~vLGICnGfQiL~el 775 (875)
+++ .++|+||||.|+|+|.+.
T Consensus 67 ~~~-~~~pvlGiC~G~Qll~~~ 87 (196)
T TIGR01855 67 VVR-LGKPVLGICLGMQLLFER 87 (196)
T ss_pred HHh-CCCCEEEECHHHHHhhhc
Confidence 777 499999999999999997
No 78
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.89 E-value=9.3e-09 Score=101.60 Aligned_cols=119 Identities=19% Similarity=0.348 Sum_probs=87.0
Q ss_pred EEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec--cc---c----------cccCccCccEEEEcCCcCccccccch
Q psy5570 673 IAVLREEGINGDREM---SAMAQVCGFEVWDITVQD--LL---E----------NKITLDRFKGLVFPGGFSYADALGSA 734 (875)
Q Consensus 673 VaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d--l~---~----------~~~~l~~~d~lvlPGGfS~gD~l~~s 734 (875)
|+|+++||++ +.|+ ..+|+.+|+++.+++... +. . ++....+||+|++|||....+.
T Consensus 1 v~il~~~gf~-~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~~---- 75 (163)
T cd03135 1 VLVILADGFE-EIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQN---- 75 (163)
T ss_pred CEEEecCCcc-hHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHHH----
Confidence 5889999998 6555 678899999999887531 11 0 1123368999999998621122
Q ss_pred hHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCC-----CCeEEeccEEeccC
Q psy5570 735 KGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYI-----KSRVRCPPLKKEKS 803 (875)
Q Consensus 735 ~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~-----~~~f~~~~v~v~~~ 803 (875)
+..++.+.+.|++|.++ ++++.+||+|..+|.++|+|.|++.|.-+.. +.+++...++.+.+
T Consensus 76 ------~~~~~~l~~~l~~~~~~-~~~i~~ic~g~~~La~aglL~g~~~T~~~~~~~~~~~~~~~~~~~v~dg~ 142 (163)
T cd03135 76 ------LADNEKLIKLLKEFNAK-GKLIAAICAAPAVLAKAGLLKGKKATCYPGFEDKLGGANYVDEPVVVDGN 142 (163)
T ss_pred ------HHhCHHHHHHHHHHHHc-CCEEEEEchhHHHHHHcCCcCCCeEEECchHHHhcCCCeEecCCEEEECC
Confidence 23478899999999985 9999999999999999999999986664333 34566665555553
No 79
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.83 E-value=2.8e-08 Score=102.03 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=90.1
Q ss_pred ceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec-----cc------------ccccCccCccEEEEcCCcCccc
Q psy5570 670 VISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD-----LL------------ENKITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d-----l~------------~~~~~l~~~d~lvlPGGfS~gD 729 (875)
++||+|++.||+. +.|+ ...|+++|+++..++... +. -++...+++|+|++|||....+
T Consensus 2 ~~~~~il~~~g~~-~~e~~~p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipGG~~~~~ 80 (196)
T PRK11574 2 SASALVCLAPGSE-ETEAVTTIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPGGIKGAE 80 (196)
T ss_pred CceEEEEeCCCcc-hhhHhHHHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECCCCchhh
Confidence 3589999999998 6555 778899999988876531 11 0011235799999999864222
Q ss_pred cccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHH-HHhcCCCCCCccccccCCC-----CeEEeccEEecc-
Q psy5570 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQL-MNLLGWFSVSTQARQPYIK-----SRVRCPPLKKEK- 802 (875)
Q Consensus 730 ~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQi-L~elGlLpg~~~t~~~n~~-----~~f~~~~v~v~~- 802 (875)
.+ ..++.+.+.++++.++ |+++.+||+|.++ |...|++.++..|..+... ..|..+.++++.
T Consensus 81 ~~----------~~~~~l~~~L~~~~~~-g~~v~aic~G~~~ll~~~gll~~~~~t~~~~~~~~~p~~~~~~~~~v~d~~ 149 (196)
T PRK11574 81 CF----------RDSPLLVETVRQFHRS-GRIVAAICAAPATVLVPHDLFPIGNMTGFPTLKDKIPAEQWQDKRVVWDAR 149 (196)
T ss_pred hh----------hhCHHHHHHHHHHHHC-CCEEEEECHhHHHHHHhCCccCCCeEeeCcChHHhcccCcccCCCEEEeCC
Confidence 22 2366799999999985 9999999999986 5558999888766544432 445555666665
Q ss_pred CCceEEEeec
Q psy5570 803 SGVNITRLSI 812 (875)
Q Consensus 803 ~~~~~~r~pi 812 (875)
.++.|.+-|-
T Consensus 150 ~~iiT~~G~~ 159 (196)
T PRK11574 150 VNLLTSQGPG 159 (196)
T ss_pred ccEEeCCCcc
Confidence 2355544443
No 80
>PRK13821 thyA thymidylate synthase; Provisional
Probab=98.80 E-value=3.6e-09 Score=115.98 Aligned_cols=50 Identities=36% Similarity=0.552 Sum_probs=48.1
Q ss_pred ceEEEEEEee--CCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVA--DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~--~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|. .|+|+|.++|||||++||+|||+++||+|++|+||+|++.
T Consensus 192 Ch~~~QF~V~~~~g~L~~~lyQRS~D~~LG~PfNiasyalL~~miA~~~gl~ 243 (323)
T PRK13821 192 CHLLYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLVGRLTGYT 243 (323)
T ss_pred ceEEEEEEEecCCCeEEEEEEeccccccccccHHHHHHHHHHHHHHHHhCCE
Confidence 8999999985 8899999999999999999999999999999999999986
No 81
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=98.80 E-value=2.2e-08 Score=106.38 Aligned_cols=100 Identities=17% Similarity=0.235 Sum_probs=76.4
Q ss_pred cCCCCCHHHH---HHHHHHcCCeeEEEEeec---------------------------ccc----ccc------CccCcc
Q psy5570 678 EEGINGDREM---SAMAQVCGFEVWDITVQD---------------------------LLE----NKI------TLDRFK 717 (875)
Q Consensus 678 ~pG~n~~~e~---~~A~~~aG~~v~~V~~~d---------------------------l~~----~~~------~l~~~d 717 (875)
..|+. +.|+ +..|+++|++|++++.+. +.. ++. +.++||
T Consensus 20 ~tG~~-~~El~~p~~~l~~aG~~V~~aS~~g~~~~~d~~s~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~~~~~~dYD 98 (232)
T cd03148 20 STGNH-PVEMLLPLYHLHAAGFDFDVATLSGLPVKFEYWAMPHEDEAVMPFFEKHKSKLRNPKKLADVVASLNADDSEYA 98 (232)
T ss_pred CCCCc-HHHHHHHHHHHHHCCCEEEEEeCCCCcCccCccccccccHHHHHHHHHHHHHhcCCCCHHHhhhhccCChhhce
Confidence 45665 5555 679999999999987631 000 011 346899
Q ss_pred EEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCC------CCCCccccccCC
Q psy5570 718 GLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGW------FSVSTQARQPYI 789 (875)
Q Consensus 718 ~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGl------Lpg~~~t~~~n~ 789 (875)
+|++|||...-..++. ++.+.+.+++|.++ ||++.+||+|.++|..+++ +.|++.|..++.
T Consensus 99 av~iPGG~g~~~dl~~----------~~~l~~ll~~f~~~-gK~VaAICHGp~~L~~a~l~~g~~ll~Gk~vT~f~~~ 165 (232)
T cd03148 99 AVFIPGGHGALIGIPE----------SQDVAAALQWAIKN-DRFVITLCHGPAAFLAARHGGGKNPLEGYSVCVFPDS 165 (232)
T ss_pred EEEECCCCCChhhccc----------CHHHHHHHHHHHHc-CCEEEEECcHHHHHHhccCCCCCeeeCCcEEecCCCH
Confidence 9999999664444544 78899999999985 9999999999999999999 999887766554
No 82
>COG0046 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, synthetase domain [Nucleotide transport and metabolism]
Probab=98.79 E-value=3.4e-08 Score=118.01 Aligned_cols=320 Identities=15% Similarity=0.072 Sum_probs=202.4
Q ss_pred HHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHH
Q psy5570 74 LQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGAR 153 (875)
Q Consensus 74 ~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~ 153 (875)
...|.+=-++-+ || .+.++|..+-.+-.|+ .| |..|++|+.+. ...++++.+-....=+.++||.||+
T Consensus 50 ~~~WSEHC~yKs--sk-~~lk~~~~t~~~~~vi---~g----~gdnAgvvdi~--d~~~v~fKvESHNHPSaIePy~GAA 117 (743)
T COG0046 50 AQMWSEHCSYKS--SK-SLLKMFPTTHTGEYVL---SG----PGDNAGVVDIG--DGWAVVFKVESHNHPSAIEPYQGAA 117 (743)
T ss_pred HHHHhhhcCccc--hH-HHHhhCCCCCCCCeEE---Ec----ccCCcceEEeC--CcEEEEEEeccCCCCCccCCCCCcc
Confidence 334444444444 44 4557788775555554 34 45589999985 4489999999999999999999999
Q ss_pred HHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchHHhhhhcCCcccCCCCCCCCC
Q psy5570 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSP 232 (875)
Q Consensus 154 ~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~~ 232 (875)
-.|-=.+|.+.++|+.++. +-.++-|. ...+|. .|=+... +.|++++-..+|+|.++|-=-..
T Consensus 118 TGvGGiIRDv~smGArPiA-~l~~l~fG-----------~~~~~~~~~i~~gv--v~Gia~YGN~iGvPtv~Ge~~fd-- 181 (743)
T COG0046 118 TGVGGIIRDVLSMGARPIA-LLDSLRFG-----------IPDIEKTRYIMKGV--VAGIAAYGNEIGVPTVGGEFRFD-- 181 (743)
T ss_pred cccCceeecccccCceeee-eecccccC-----------CCCCchhhhHHhcc--ccchhhcCccccccccceEEEEc--
Confidence 9999999999999986655 33333332 112333 3323333 99999999999999985421000
Q ss_pred CccccccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCCcceEEEEEEe
Q psy5570 233 GKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYV 312 (875)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~~~s~laq~~v 312 (875)
..| . .| -+||
T Consensus 182 ---------------------------~~y---~---~n-------pLvn------------------------------ 191 (743)
T COG0046 182 ---------------------------ESY---V---GN-------PLVN------------------------------ 191 (743)
T ss_pred ---------------------------ccc---C---CC-------ceEE------------------------------
Confidence 000 0 00 0110
Q ss_pred eCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccCCCCcceeeEEee
Q psy5570 313 ADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYK 392 (875)
Q Consensus 313 ~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk 392 (875)
|-..+++|.. .++... . ..
T Consensus 192 ----------------------------------a~~vG~i~~~-------------~i~~~~--a------------~~ 210 (743)
T COG0046 192 ----------------------------------AGCVGLIRKE-------------HIVKGE--A------------IG 210 (743)
T ss_pred ----------------------------------EEEeeecchh-------------heeecc--C------------CC
Confidence 0000222110 001000 0 04
Q ss_pred cCCEEEEecccccccCcc-ccccCCcccccCC--CCCCCCCcccCchHHHHHHHHHHH-hH---HhhhhcccCC-ChHHH
Q psy5570 393 VGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH--GIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAESFYD-RMTEC 464 (875)
Q Consensus 393 ~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~--G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~hdvsD-GL~~a 464 (875)
.||.+.+.|..+.-+|+= -.|-. .-++. ...=.|.--+.|+...|.+..++. ++ .|.++||+.. ||+.|
T Consensus 211 ~G~~li~~Gg~TgrDGigGat~aS---~~~~~~~~e~dr~aVQvGdPf~Ek~l~ea~le~~~~~~I~~i~DlGAgGLs~A 287 (743)
T COG0046 211 PGDKLILLGGKTGRDGIGGATFAS---MELGEESEEEDRPSVQVGDPFMEKRLQEAILECVQTGLIKGIQDLGAGGLSCA 287 (743)
T ss_pred CCCEEEEEcCCccccccCchhhhh---hhhCcchhhhcCCccccCChHHHHHHHHHHHHHHhcCCeEEEeccCCchhhhh
Confidence 566654544333222211 00000 01121 000001111445666777777776 55 7999999999 99999
Q ss_pred HhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceee---EecCCHHHHHH
Q psy5570 465 VYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLA---FDEWDLEYYTD 541 (875)
Q Consensus 465 l~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~v---v~~~d~~~v~~ 541 (875)
+.||+ ..++.|++ +|+...+.. . .+.++++.+-||+-=+. |.+.+.+.+.+
T Consensus 288 ~~Ela-~~gg~G~~------i~Ld~VP~r--------E-----------~gMsp~Ei~~SESQERMllvv~p~~~e~~~~ 341 (743)
T COG0046 288 ISELA-AKGGLGAE------IDLDKVPLR--------E-----------PGMSPYEIWLSESQERMLLVVAPEDVEEFLE 341 (743)
T ss_pred HHHHH-hccCCeEE------EEhhcCccc--------C-----------CCCCHHHHHHhccchheEEEEccccHHHHHH
Confidence 99999 88999999 998765521 1 13367899999995543 88899999999
Q ss_pred HHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHH
Q psy5570 542 IFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFL 593 (875)
Q Consensus 542 ~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~ 593 (875)
+|++ .++++.+||+++.+ ..+++.++|+.+.+.+++-|..
T Consensus 342 i~~k------~~l~~aVVG~vT~~------~~~~~~~~ge~v~dlP~~~L~~ 381 (743)
T COG0046 342 ICEK------ERLPAAVVGEVTDE------PRLVVDWKGEPVVDLPIDVLAG 381 (743)
T ss_pred HHHH------cCCCeEEEEEEecC------ceEEEEECCCEEEeccHHHHcC
Confidence 9998 88999999999998 4688889999988888888876
No 83
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=98.78 E-value=2.5e-08 Score=100.40 Aligned_cols=105 Identities=17% Similarity=0.279 Sum_probs=77.7
Q ss_pred EEEEEecCCCCCHHHH---HHHHHHcCCeeEE--EEee-c-cc-cc------------ccCccCccEEEEcCCcCccccc
Q psy5570 672 SIAVLREEGINGDREM---SAMAQVCGFEVWD--ITVQ-D-LL-EN------------KITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~--V~~~-d-l~-~~------------~~~l~~~d~lvlPGGfS~gD~l 731 (875)
||+|+++||+. +.|+ ..+|+.+|+++.. ++.. . .. .+ +....++|+|++|||.....
T Consensus 1 ~v~il~~~gf~-~~e~~~~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~~~~~-- 77 (179)
T TIGR01383 1 KVLVPLAPGFE-EMEAVITVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGMPGAE-- 77 (179)
T ss_pred CEEEEecCCch-HHHHHHHHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCchHHH--
Confidence 68999999998 6555 6788899987765 5432 1 11 01 12256799999999853111
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY 788 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n 788 (875)
.+..++.+.+.|+++.++ ++++.+||.|..+|.++|+|.|.+.|..+.
T Consensus 78 --------~~~~~~~l~~~l~~~~~~-~~~i~~ic~G~~~La~aGlL~g~~~T~~~~ 125 (179)
T TIGR01383 78 --------NLRNSKLLLNILKKQESK-GKLVAAICAAPAVLLAAGVLLGKKATCYPG 125 (179)
T ss_pred --------HHhhCHHHHHHHHHHHHC-CCEEEEEChhHHHHHhcCCCCCCcEEECcc
Confidence 123467899999999985 999999999999999999999998666433
No 84
>cd02197 HypE HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.
Probab=98.78 E-value=1.2e-08 Score=111.72 Aligned_cols=86 Identities=13% Similarity=-0.021 Sum_probs=64.6
Q ss_pred CceEEEEEecCCcEEEEEEecCCCcccccCHH-----HHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccc
Q psy5570 118 ADVAVVALVHNDLRGAATSIGEQPIKGLVDPK-----RGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRF 192 (875)
Q Consensus 118 sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy-----~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w 192 (875)
.|++|++++ ...+++|++.. ..+|| .-++.||++++++|+|+|+.++. +.+++++
T Consensus 27 DDaavi~~~---~~~lv~ttD~~----~~~~~~~~~~~iG~~av~~~~sDiaamGa~P~~-~~~~l~l------------ 86 (293)
T cd02197 27 EDAAALLVG---GGRLAFTTDSF----VVSPLFFPGGDIGKLAVCGTVNDLAMMGAKPLY-LSLGFIL------------ 86 (293)
T ss_pred CceEEEecC---CceEEEEecCc----cccCcccCchhHHHHHHHhhHHHHHHcCCcchh-heEEEEC------------
Confidence 699999874 24688999865 23454 44999999999999999986654 8888886
Q ss_pred cccCcchhcccccccccchHHhhhhcCCcccCCC
Q psy5570 193 AFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 193 ~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
|.++| .+++.+. ++||.++|+++|+|++||-
T Consensus 87 p~~~~-~~~l~~~--~~Gi~~~~~~~g~~ivGGd 117 (293)
T cd02197 87 EEGFP-LEDLERI--VKSMAEAAREAGVKIVTGD 117 (293)
T ss_pred CCCCC-HHHHHHH--HHHHHHHHHHcCCEEEece
Confidence 22333 3333333 9999999999999999765
No 85
>KOG2764|consensus
Probab=98.78 E-value=2.5e-08 Score=103.95 Aligned_cols=156 Identities=15% Similarity=0.183 Sum_probs=106.2
Q ss_pred EEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEee---------------cccccccCccCccEEEEcCCcCccccccc
Q psy5570 672 SIAVLREEGINGDREM---SAMAQVCGFEVWDITVQ---------------DLLENKITLDRFKGLVFPGGFSYADALGS 733 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~---------------dl~~~~~~l~~~d~lvlPGGfS~gD~l~~ 733 (875)
++.|+.-.|++ ++|+ ...|++.|.+|+.++.+ |....+..-+.||++|||||.-.+..|..
T Consensus 7 ~vlil~~~g~E-e~E~ivp~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPGG~~g~e~L~~ 85 (247)
T KOG2764|consen 7 AVLILCADGME-EYEFIVPIDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPGGLPGAETLSE 85 (247)
T ss_pred cEEEEccCCcc-eeEEEEeHHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecCCchhhhhhhh
Confidence 46666666666 5544 78999999999999753 22222333389999999999775555543
Q ss_pred hhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHH-HHHhcCCCCCCccccc-------cCCCCeEEeccEEeccCCc
Q psy5570 734 AKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQ-LMNLLGWFSVSTQARQ-------PYIKSRVRCPPLKKEKSGV 805 (875)
Q Consensus 734 s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQ-iL~elGlLpg~~~t~~-------~n~~~~f~~~~v~v~~~~~ 805 (875)
.+.+.+.+++|.++ |+++..||+|.- +|..-|+..|.+.|.. .+.+..|+...|+++.| +
T Consensus 86 ----------~~~v~~lvK~q~~~-gkLIaaICaap~~al~a~gl~~gkk~T~~ps~k~~L~~~gy~yve~~vv~dG~-l 153 (247)
T KOG2764|consen 86 ----------CEKVVDLVKEQAES-GKLIAAICAAPLTALAAHGLLGGKKCTAHPSVKPKLEEGGYKYVEPRVVKDGN-L 153 (247)
T ss_pred ----------cHHHHHHHHHHHhc-CCeEEEeecchHHHHhhccccccceeeeccchhhhHhhcCcEEecCCeEEeCc-E
Confidence 67788999999985 999999999994 4555566657776663 33458888888888886 7
Q ss_pred eEEEeecce-eecCHHHHHHHHhCCCcee-eecceeee
Q psy5570 806 NITRLSITL-NFSTSDTLSWLLDSNTNVT-VSALSWAF 841 (875)
Q Consensus 806 ~~~r~pi~~-~f~~~~~l~~l~~~~~~~~-~~~~~~~~ 841 (875)
.++|-|-.+ -|+ -.-+++|.....-.. ...|+|.|
T Consensus 154 iTSrGpgT~~eFa-l~lvEqL~GKeka~~v~~~l~l~~ 190 (247)
T KOG2764|consen 154 ITSRGPGTAFEFA-LKLVEQLGGKEKANEVKKPLSLLF 190 (247)
T ss_pred EeccCCCchHHHH-HHHHHHhcCchhhhhhhccceeec
Confidence 888888777 331 112444443332211 24567777
No 86
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=98.76 E-value=2.9e-08 Score=104.54 Aligned_cols=124 Identities=13% Similarity=0.119 Sum_probs=89.1
Q ss_pred cCCCCCHHHH---HHHHHHcCCeeEEEEeec----------------------------------ccccccCccCccEEE
Q psy5570 678 EEGINGDREM---SAMAQVCGFEVWDITVQD----------------------------------LLENKITLDRFKGLV 720 (875)
Q Consensus 678 ~pG~n~~~e~---~~A~~~aG~~v~~V~~~d----------------------------------l~~~~~~l~~~d~lv 720 (875)
..|+. +.|+ ..+|+++|++|..++... +.-++.++++||+|+
T Consensus 17 ~~G~~-~~E~~~p~~~l~~aG~~V~~as~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dal~ 95 (221)
T cd03141 17 PTGLW-LEELAHPYDVFTEAGYEVDFASPKGGKVPLDPRSLDAEDDDDASVFDNDEEFKKKLANTKKLSDVDPSDYDAIF 95 (221)
T ss_pred cCccC-HHHHHHHHHHHHHCCCeEEEECCCCCCCCcCchhccccccCHHHHhhcCHHHHHHHHccCChhHCCHhHceEEE
Confidence 35554 4555 779999999999986531 011133466899999
Q ss_pred EcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcC------CCCCCccccccC------
Q psy5570 721 FPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG------WFSVSTQARQPY------ 788 (875)
Q Consensus 721 lPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG------lLpg~~~t~~~n------ 788 (875)
||||......+ ..++.+.+.|++|.++ ++++.+||+|.++|.++| +|.|++.|..++
T Consensus 96 ipGG~~~~~~l----------~~~~~l~~~l~~~~~~-~k~iaaIC~g~~~La~ag~~~~~~ll~gr~~T~~~~~~~~~~ 164 (221)
T cd03141 96 IPGGHGPMFDL----------PDNPDLQDLLREFYEN-GKVVAAVCHGPAALLNVKLSDGKSLVAGKTVTGFTNEEEEAA 164 (221)
T ss_pred ECCCccccccc----------ccCHHHHHHHHHHHHc-CCEEEEEcchHHHHHhccCcCCCeeeCCcEEeccCCHHHHhc
Confidence 99987532223 3478899999999985 999999999999999999 799998877544
Q ss_pred ----------------CCCeEEec-----cEEeccCCceEEEeecce
Q psy5570 789 ----------------IKSRVRCP-----PLKKEKSGVNITRLSITL 814 (875)
Q Consensus 789 ----------------~~~~f~~~-----~v~v~~~~~~~~r~pi~~ 814 (875)
+++.|... .|++|.+ +.|.+-|-+.
T Consensus 165 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~vv~D~~-lvT~~~p~s~ 210 (221)
T cd03141 165 GLKKVVPFLLEDELKELGANYVKAEPWAEFVVVDGR-LITGQNPASA 210 (221)
T ss_pred CccCcCCcCHHHHHHHcCCEeecCCCCCCCEEEeCC-EeeCCCchhH
Confidence 34567653 3666654 6676666543
No 87
>TIGR03284 thym_sym thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin.
Probab=98.76 E-value=4.7e-09 Score=114.11 Aligned_cols=50 Identities=78% Similarity=1.093 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++|++|++|+|++|++.
T Consensus 178 Ch~~~QF~V~dgkL~~~~~qRS~D~~lG~pfNiasyalL~~mvA~~~Gl~ 227 (296)
T TIGR03284 178 CHTLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQETGLE 227 (296)
T ss_pred ceEEEEEEEeCCEEEEEEEEechhhhhhhhhhHHHHHHHHHHHHHHhCCE
Confidence 89999999999999999999999999999999999999999999999976
No 88
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=98.74 E-value=9.7e-09 Score=101.03 Aligned_cols=97 Identities=16% Similarity=0.234 Sum_probs=76.2
Q ss_pred cccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccc
Q psy5570 707 LENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQ 786 (875)
Q Consensus 707 ~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~ 786 (875)
.-++...++||+|+||||....+.++. .++.+.+.+++|.++ +|++.+||+|.++|.++|++.|.+.|..
T Consensus 29 ~l~~~~~~~yDalilpGG~~~~~~l~~---------~~~~l~~~~~~~~~~-~k~iaaIC~g~~~L~~~gll~g~~~T~~ 98 (147)
T PF01965_consen 29 TLDEIDPSDYDALILPGGHGGADDLRT---------DSKDLLELLKEFYEA-GKPIAAICHGPAVLAAAGLLKGKKVTSY 98 (147)
T ss_dssp EGGGHTGGGESEEEEE-BTHHHHHHTT---------CHHHHHHHHHHHHHT-T-EEEEETTCHHHHHHTTTTTTSEEC-S
T ss_pred cHHHCChhhCCEEEECCCCchhhhHhh---------HHHHHHHHHHHHHHc-CCeEEecCCCcchhhccCccCCceeecC
Confidence 334566788999999999886566653 138899999999995 9999999999999999999999998875
Q ss_pred cCC-------CCeEEe--ccEEecc-CCceEEEeecce
Q psy5570 787 PYI-------KSRVRC--PPLKKEK-SGVNITRLSITL 814 (875)
Q Consensus 787 ~n~-------~~~f~~--~~v~v~~-~~~~~~r~pi~~ 814 (875)
++. +.+|.. ..+++++ + +.|.+-|-+.
T Consensus 99 ~~~~~~~~~~g~~~~~~~~~~vvD~~n-lIT~~~~~~~ 135 (147)
T PF01965_consen 99 PNDEEDLENAGANYVDQDDPVVVDGGN-LITGRGPGSA 135 (147)
T ss_dssp GGGHHHHHHTTTEEBSCSSSEEEETTT-EEEESSGGGH
T ss_pred ccHHHHHHHCCCEEEecCCCeEEECCe-EEECCChhhH
Confidence 544 578877 7788887 5 8888887665
No 89
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.72 E-value=4.3e-08 Score=98.65 Aligned_cols=99 Identities=18% Similarity=0.317 Sum_probs=75.0
Q ss_pred EEEEecCCCCCHHHH---HHHHHHc-CCeeEEEEee--------------cccccccCccCccEEEEcCCcCccccccch
Q psy5570 673 IAVLREEGINGDREM---SAMAQVC-GFEVWDITVQ--------------DLLENKITLDRFKGLVFPGGFSYADALGSA 734 (875)
Q Consensus 673 VaIlv~pG~n~~~e~---~~A~~~a-G~~v~~V~~~--------------dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s 734 (875)
++|++++|++ +.|+ ...|+++ ++++.+++.+ |..-++...+++|+|++|||.....
T Consensus 1 ~~v~~~~~f~-~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~----- 74 (170)
T cd03140 1 IAVFLTDEFA-DWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDN----- 74 (170)
T ss_pred CEEEeccchh-hhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCccccc-----
Confidence 4788999999 6665 5577776 7888887653 1111122236799999999975321
Q ss_pred hHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 735 KGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 735 ~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
..++.+.+.++++.++ ++++.+||+|.++|.++|+|.|++.|.
T Consensus 75 -------~~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~aGlL~g~~~Tt 117 (170)
T cd03140 75 -------PEAPDLAGLVRQALKQ-GKPVAAICGATLALARAGLLNNRKHTS 117 (170)
T ss_pred -------CCcHHHHHHHHHHHHc-CCEEEEEChHHHHHHHCCCcCCCcccC
Confidence 1257789999999985 999999999999999999999987655
No 90
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.72 E-value=1.1e-07 Score=96.59 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=76.8
Q ss_pred EEEEecCCCCCHHHH---HHHHHHcC-------CeeEEEEeec-ccc---------c--ccCccCccEEEEcCCcCcccc
Q psy5570 673 IAVLREEGINGDREM---SAMAQVCG-------FEVWDITVQD-LLE---------N--KITLDRFKGLVFPGGFSYADA 730 (875)
Q Consensus 673 VaIlv~pG~n~~~e~---~~A~~~aG-------~~v~~V~~~d-l~~---------~--~~~l~~~d~lvlPGGfS~gD~ 730 (875)
|+|++++|+. +.|+ ..+|+.++ +++.+++... ... + -.++.++|+|++|||.... .
T Consensus 1 i~ill~~gf~-~~~~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~v~~d~~~~~~~~~D~liipGg~~~~-~ 78 (187)
T cd03137 1 VAVLVFPGVS-LLDLSGPAEVFGEANRALGPPAYELRVCSPEGGPVRSSSGLSLVADAGLDALAAADTVIVPGGPDVD-G 78 (187)
T ss_pred CEEEEeCCCC-hhHHhHHHHHHHHHHhhcCCCCeEEEEEeCCCCceeecCCcEEEcCcCccccCCCCEEEECCCcccc-c
Confidence 5788899998 5554 66888887 8888887531 000 0 1145689999999986532 2
Q ss_pred ccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 731 LGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 731 l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
. ..++.+.+.|+++.++ ++++++||+|.++|.++|+|.+.+.|.
T Consensus 79 ~----------~~~~~l~~~l~~~~~~-~~~i~aic~g~~~La~aGlL~~~~~t~ 122 (187)
T cd03137 79 R----------PPPPALLAALRRAAAR-GARVASVCTGAFVLAEAGLLDGRRATT 122 (187)
T ss_pred c----------cCCHHHHHHHHHHHhc-CCEEEEECHHHHHHHHccCcCCCceee
Confidence 2 2478899999999985 999999999999999999999997666
No 91
>PRK04306 50S ribosomal protein L21e; Reviewed
Probab=98.71 E-value=6.7e-09 Score=95.65 Aligned_cols=63 Identities=25% Similarity=0.304 Sum_probs=51.8
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccc--cccccccccCCCC
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTR--IIPKSAEKISSSV 301 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~r--itp~l~~~~~~sk 301 (875)
..+..++++++.+++|+|+||||+.|||+||+|+|++.+|.|+.|. ++++ .+-=+.|||.+++
T Consensus 33 ~~y~~Gd~V~I~~d~sv~kGmPh~~yhGkTG~V~~v~~~A~~V~v~--vg~k~Kri~vr~eHlk~~~ 97 (98)
T PRK04306 33 QEFEEGDKVHIVIDPSVHKGMPHPRFHGKTGTVVGKRGRAYIVEVK--DGGKEKTLIVRPEHLRPQK 97 (98)
T ss_pred HhccCCCEEEEEecCceecCCccccccCCCEEEEeecCeEEEEEEE--ECCceeEEEcCHHHcCccC
Confidence 3466789999999999999999999999999999999999999994 4555 2222366888775
No 92
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.71 E-value=7.4e-08 Score=93.89 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=74.4
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec--c------------cccccCccCccEEEEcCCcCccccccc
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD--L------------LENKITLDRFKGLVFPGGFSYADALGS 733 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d--l------------~~~~~~l~~~d~lvlPGGfS~gD~l~~ 733 (875)
+||+|++++|+. ..|+ ..+|+.+|+++.+++.+. + .-++....+||+|++|||......
T Consensus 2 ~~v~ill~~g~~-~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~--- 77 (142)
T cd03132 2 RKVGILVADGVD-AAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFA--- 77 (142)
T ss_pred CEEEEEEcCCcC-HHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHH---
Confidence 479999999997 5444 779999999999987541 1 011122346999999998653222
Q ss_pred hhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCC
Q psy5570 734 AKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSV 780 (875)
Q Consensus 734 s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg 780 (875)
+..++.+.+.+++++++ ++++.+||.|..+|.++|++.-
T Consensus 78 -------~~~~~~l~~~l~~~~~~-~~~I~aic~G~~~La~aGll~~ 116 (142)
T cd03132 78 -------LAPSGRALHFVTEAFKH-GKPIGAVGEGSDLLEAAGIPLE 116 (142)
T ss_pred -------HccChHHHHHHHHHHhc-CCeEEEcCchHHHHHHcCCCCC
Confidence 23477899999999985 9999999999999999999753
No 93
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=98.71 E-value=3.5e-08 Score=101.03 Aligned_cols=85 Identities=29% Similarity=0.456 Sum_probs=66.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|+|++.+|.+++.. .+|++.|+++..+.. ..+++++|+||+|||.+.. . .....+..+.+.++
T Consensus 1 igvl~~qg~~~e~~--~~l~~~g~~v~~v~~------~~~l~~~dgiii~Gg~~~~--~-------~~~~~~~~~~~~i~ 63 (183)
T cd01749 1 IGVLALQGDFREHI--RALERLGVEVIEVRT------PEDLEGIDGLIIPGGESTT--I-------GKLLRRTGLLDPLR 63 (183)
T ss_pred CEEEEecCCcHHHH--HHHHHCCCeEEEECC------HHHhccCCEEEECCchHHH--H-------HHHHHhCCHHHHHH
Confidence 57888999886554 899999999988764 2358899999999997521 1 12334556788899
Q ss_pred HHHHCCCceEEEEehhHHHHHhc
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++++ |+|+||||.|+|+|.+.
T Consensus 64 ~~~~~-g~PvlGiC~G~qlL~~~ 85 (183)
T cd01749 64 EFIRA-GKPVFGTCAGLILLAKE 85 (183)
T ss_pred HHHHc-CCeEEEECHHHHHHHHH
Confidence 99985 99999999999999873
No 94
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=98.70 E-value=3.3e-08 Score=100.21 Aligned_cols=88 Identities=16% Similarity=0.184 Sum_probs=62.5
Q ss_pred EecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHH
Q psy5570 676 LREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFI 755 (875)
Q Consensus 676 lv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~ 755 (875)
++++|+++.+.+..+|+++|+++.++.... ...+..++++|+||||||.... .+.. .+.+ .+..+
T Consensus 3 ~iD~g~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgvIl~Gg~~~~--~~~~---------~~~~---~~~~~ 67 (181)
T cd01742 3 ILDFGSQYTHLIARRVRELGVYSEILPNTT-PLEEIKLKNPKGIILSGGPSSV--YEED---------APRV---DPEIF 67 (181)
T ss_pred EEECCCchHHHHHHHHHhcCceEEEecCCC-ChhhhcccCCCEEEECCCcccc--cccc---------cchh---hHHHH
Confidence 569999999999999999999998876541 1112357899999999986521 1110 0111 23344
Q ss_pred HCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 756 ARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 756 ~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
+ .++|+||||.|+|+|+.+ +.|.
T Consensus 68 ~-~~~PilGIC~G~Qll~~~--~gg~ 90 (181)
T cd01742 68 E-LGVPVLGICYGMQLIAKA--LGGK 90 (181)
T ss_pred h-cCCCEEEEcHHHHHHHHh--cCCe
Confidence 4 389999999999999993 5554
No 95
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=98.67 E-value=3.9e-08 Score=100.69 Aligned_cols=86 Identities=16% Similarity=0.145 Sum_probs=62.7
Q ss_pred EecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCc--cEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHH
Q psy5570 676 LREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRF--KGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNK 753 (875)
Q Consensus 676 lv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~--d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~ 753 (875)
++++|..+.+.+..+|++.|+++.++.... +..+++++ |+||||||.+... .. ...+.++.
T Consensus 3 iiD~g~~~~~~l~~~l~~~g~~~~~~~~~~---~~~~~~~~~~~glii~Gg~~~~~-~~-------------~~~~~i~~ 65 (188)
T TIGR00888 3 VLDFGSQYTQLIARRLRELGVYSELVPNTT---PLEEIREKNPKGIILSGGPSSVY-AE-------------NAPRADEK 65 (188)
T ss_pred EEECCchHHHHHHHHHHHcCCEEEEEeCCC---CHHHHhhcCCCEEEECCCCCCcC-cC-------------CchHHHHH
Confidence 469999999999999999999998876531 12234444 5999999976321 11 12344566
Q ss_pred HHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 754 FIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 754 f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
.+++ ++|+||||.|+|+|..+ ++|.
T Consensus 66 ~~~~-~~PilGIC~G~Qll~~~--lgg~ 90 (188)
T TIGR00888 66 IFEL-GVPVLGICYGMQLMAKQ--LGGE 90 (188)
T ss_pred HHhC-CCCEEEECHHHHHHHHh--cCce
Confidence 6774 99999999999999985 4454
No 96
>KOG1732|consensus
Probab=98.65 E-value=9e-09 Score=102.47 Aligned_cols=76 Identities=53% Similarity=0.772 Sum_probs=70.1
Q ss_pred ccccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCCCcceEEEEEE
Q psy5570 236 ERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSVSRKTCLAQFY 311 (875)
Q Consensus 236 ~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk~~~s~laq~~ 311 (875)
.+++..+++++..++.+.++|||++.|||+||++|+++++++|+++|++|+++++.++ +||+..|+|+++++-+..
T Consensus 31 ~~i~k~gdivdi~~~~~~~kg~p~k~y~gktgrvy~v~~~a~giv~nKqvkgKil~KRinV~iEhik~sk~~~~fl~r~k 110 (160)
T KOG1732|consen 31 MRIYKKGDIVDIKGNGTVQKGMPHKCYHGKTGRVYNVTQHAVGVVVNKQVKGKILAKRINVRIEHIKHSKCRDEFLKRVK 110 (160)
T ss_pred eeeecccceeecccccchhcCCccccccccccceeeccceeEEEEEEEeeccceeeeeeeeEeeccccccchhhhhhhhc
Confidence 4778889999999999999999999999999999999999999999999999999998 679999999988777654
No 97
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.63 E-value=1.1e-07 Score=96.07 Aligned_cols=100 Identities=19% Similarity=0.308 Sum_probs=76.0
Q ss_pred EEEEecCCCCCHHHH---HHHHHHcC-----CeeEEEEeec----------cccc--ccCccCccEEEEcCCcCcccccc
Q psy5570 673 IAVLREEGINGDREM---SAMAQVCG-----FEVWDITVQD----------LLEN--KITLDRFKGLVFPGGFSYADALG 732 (875)
Q Consensus 673 VaIlv~pG~n~~~e~---~~A~~~aG-----~~v~~V~~~d----------l~~~--~~~l~~~d~lvlPGGfS~gD~l~ 732 (875)
|+|+++||++ +.|+ ..+|+.+| +++.+++... +..+ -.+..+||+|++|||.. .+.+
T Consensus 1 i~ill~~gf~-~~~~~~~~d~~~~a~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~lvipgg~~-~~~~- 77 (183)
T cd03139 1 VGILLFPGVE-VLDVIGPYEVFGRAPRLAAPFEVFLVSETGGPVSSRSGLTVLPDTSFADPPDLDVLLVPGGGG-TRAL- 77 (183)
T ss_pred CEEEEeCCCC-EehheeHHHHHHHhhccCCCEEEEEEECCCCceEeCCCCEEcCCcccccCCCCCEEEECCCcc-hhhh-
Confidence 5788999998 5444 77899998 9999887531 1111 11245799999999853 2222
Q ss_pred chhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 733 ~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
..++.+++.++++.++ ++++.+||+|..+|.++|++.|++.|.
T Consensus 78 ---------~~~~~~~~~l~~~~~~-~k~i~aic~g~~~La~agll~g~~~t~ 120 (183)
T cd03139 78 ---------VNDPALLDFIRRQAAR-AKYVTSVCTGALLLAAAGLLDGRRATT 120 (183)
T ss_pred ---------ccCHHHHHHHHHhccc-CCEEEEEchHHHHHHhcCCcCCCeeee
Confidence 3478899999999985 999999999999999999999987554
No 98
>TIGR00878 purM phosphoribosylaminoimidazole synthetase. This enzyme is found as a homodimeric monofunctional protein in prokaryotes and as part of a larger, multifunctional protein, sometimes with two copies of this enzyme in tandem, in eukaryotes.
Probab=98.62 E-value=1.6e-07 Score=104.72 Aligned_cols=92 Identities=9% Similarity=-0.159 Sum_probs=66.7
Q ss_pred CcCceEEEEEecCCc--EEEEEEecCCCcccc----cCHHH-HHHHHHHHHHhhccccCCcccccceeccccccccccCC
Q psy5570 116 PLADVAVVALVHNDL--RGAATSIGEQPIKGL----VDPKR-GARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSF 188 (875)
Q Consensus 116 p~sDaaV~~~~~~~~--~g~ams~G~~p~~~~----~dPy~-GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~ 188 (875)
.+.|++|+++. ++. .+++++++....... .+|+. .+..||.-++++|+|+|+.++. +..++++- .
T Consensus 36 ~GdDaav~~~~-~~~~~~~l~~t~D~~g~~~~~~~~~~~~~~~G~~av~~n~sDiaa~Ga~P~~-~~~~l~~~--~---- 107 (332)
T TIGR00878 36 LGGFAGLFDLG-DKYKEPVLVSGTDGVGTKLLVAEAMNKHDTIGIDLVAMNVNDLLVQGAEPLF-FLDYLAVG--K---- 107 (332)
T ss_pred CCCCeEEEEcc-cccCCceEEEeccccccchHHHHHcCchHHHHHHHHHHHHHHHHHcCCcHHH-HHHHHhcC--C----
Confidence 34699999875 222 689999997533333 34544 8999999999999999986655 66676652 0
Q ss_pred cccccccCcc-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 189 SGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 189 ~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
..++ +.+. ++||.++|+++|+|++||.
T Consensus 108 ------~~~~~~~~i-----~~Gi~~a~~~~g~~ivGG~ 135 (332)
T TIGR00878 108 ------LDPEVASQI-----VKGIAEGCKQAGCALVGGE 135 (332)
T ss_pred ------CCHHHHHHH-----HHHHHHHHHHcCCEEEcee
Confidence 1222 4444 8999999999999999765
No 99
>cd06061 PurM-like1 AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=98.60 E-value=6.2e-08 Score=105.82 Aligned_cols=89 Identities=12% Similarity=-0.049 Sum_probs=66.1
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccccccc-
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK- 195 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g- 195 (875)
+.|++|+++. ....+++++. ...+||..+..+|+.++++++|+|+.+ ..+.+++++- .+
T Consensus 32 gdDaav~~~~---~~~lv~s~D~----~~~~~~~iG~~av~~~~sDi~amGa~P-~~~~~~l~~p------------~~~ 91 (298)
T cd06061 32 GEDAAVVDFG---GKVLVVSTDP----ITGAGKDAGWLAVHIAANDIATSGARP-RWLLVTLLLP------------PGT 91 (298)
T ss_pred cceeEEEeeC---CcEEEEEcCc----eeeCCcceeeehhhhhHHHHHhcCCCC-ceeEEEEEcC------------CCC
Confidence 4699999764 2356677764 222499999999999999999999854 5587887762 11
Q ss_pred Ccc-hhcccccccccchHHhhhhcCCcccCCCCCCC
Q psy5570 196 NHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNPNG 230 (875)
Q Consensus 196 ~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~ 230 (875)
+++ +-++ .+|+.++|+++|+|+++|.-+.+
T Consensus 92 ~~~~l~~~-----~~Gi~~~~~~~gi~ivGG~t~~~ 122 (298)
T cd06061 92 DEEELKAI-----MREINEAAKELGVSIVGGHTEVT 122 (298)
T ss_pred CHHHHHHH-----HHHHHHHHHHcCCeEEeeeeEEc
Confidence 222 4444 89999999999999999886544
No 100
>PRK01827 thyA thymidylate synthase; Reviewed
Probab=98.59 E-value=3.1e-08 Score=106.88 Aligned_cols=50 Identities=78% Similarity=1.101 Sum_probs=48.8
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
|+++.||++..|+|+|.++|||||+.+|.|||+++|++|+.|+|++|++.
T Consensus 146 C~~~~qf~V~~g~L~~~~~qRS~D~~lG~p~Ni~~y~~L~~~vA~~~gl~ 195 (264)
T PRK01827 146 CHALFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLK 195 (264)
T ss_pred eEEEEEEEEeCCEEEEEEEEehhhhhccccchHHHHHHHHHHHHHHcCCe
Confidence 89999999999999999999999999999999999999999999999876
No 101
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.58 E-value=7.1e-08 Score=99.24 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCCeeEEEEeeccc-ccccCccCccEEEEcCCcCccccccch--hHHHH--HHhhchhHHHHHHHHHHCCC
Q psy5570 685 REMSAMAQVCGFEVWDITVQDLL-ENKITLDRFKGLVFPGGFSYADALGSA--KGWAA--SLLLNEGIKTQLNKFIARSD 759 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~dl~-~~~~~l~~~d~lvlPGGfS~gD~l~~s--~~~a~--ail~~~~i~~~v~~f~~r~g 759 (875)
.++.++|+++|+.+.++...+-. .-+..++.+|+||||||.++.+...+. ..|.. ...++....+.++++++. +
T Consensus 22 ~~~~~~l~~~G~~~~iv~~~~~~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~-~ 100 (189)
T cd01745 22 QYYVDAVRKAGGLPVLLPPVDDEEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALER-G 100 (189)
T ss_pred HHHHHHHHHCCCEEEEeCCCCChHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHC-C
Confidence 56788999999999887654211 101235789999999999886542110 00000 011223346788888884 9
Q ss_pred ceEEEEehhHHHHHhc
Q psy5570 760 TFSFGVCNGCQLMNLL 775 (875)
Q Consensus 760 ~~vLGICnGfQiL~el 775 (875)
+|+||||+|+|+|..+
T Consensus 101 ~PilgiC~G~Q~l~~~ 116 (189)
T cd01745 101 KPILGICRGMQLLNVA 116 (189)
T ss_pred CCEEEEcchHHHHHHH
Confidence 9999999999999883
No 102
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=98.57 E-value=1.1e-07 Score=97.16 Aligned_cols=87 Identities=20% Similarity=0.321 Sum_probs=67.0
Q ss_pred EEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccc-cCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHH
Q psy5570 675 VLREEGINGDREMSAMAQVCGFEVWDITVQDLLENK-ITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNK 753 (875)
Q Consensus 675 Ilv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~-~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~ 753 (875)
++++.|......+..+|++.|.++++++..+-.... .++.++|+|||+||.+.... .....+.+++
T Consensus 1 lviD~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~d~iii~Gg~~~~~d-------------~~~~~~~i~~ 67 (192)
T PF00117_consen 1 LVIDNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLEDLDDYDGIIISGGPGSPYD-------------IEGLIELIRE 67 (192)
T ss_dssp EEEESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHHHTTTSSEEEEECESSSTTS-------------HHHHHHHHHH
T ss_pred CEEeCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhhhhcCCCEEEECCcCCcccc-------------cccccccccc
Confidence 356999999999999999999999998865211111 04789999999999875433 1345667777
Q ss_pred HHHCCCceEEEEehhHHHHHhc
Q psy5570 754 FIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 754 f~~r~g~~vLGICnGfQiL~el 775 (875)
+.++ ++|+||||.|+|+|+.+
T Consensus 68 ~~~~-~~PilGIC~G~Q~la~~ 88 (192)
T PF00117_consen 68 ARER-KIPILGICLGHQILAHA 88 (192)
T ss_dssp HHHT-TSEEEEETHHHHHHHHH
T ss_pred cccc-ceEEEEEeehhhhhHHh
Confidence 7774 89999999999999984
No 103
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=98.54 E-value=5.1e-07 Score=97.09 Aligned_cols=87 Identities=14% Similarity=-0.060 Sum_probs=65.3
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccC
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKN 196 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~ 196 (875)
+.||+|+++. ...=+.-+=|-=+++...||++-++.+|.=-+..++|+|+.++.-+ |-. |+ .+
T Consensus 43 GDDAavI~v~--~~~lliaadGi~g~l~~~dPw~aG~csvLVn~~DV~amGG~Pv~~v----d~i----------sa-~s 105 (324)
T COG2144 43 GDDAAVIRVG--DGKLLIAADGIWGKLIDADPWWAGYCSVLVNVNDVAAMGGEPVGAV----DAI----------SA-KS 105 (324)
T ss_pred CCceEEEeeC--CcEEEEecCCccccccccCchhhhceeEEEeehhhhhhCCcceEEE----Eee----------ec-CC
Confidence 4699999984 4445556667788999999999999888777999999998766532 222 32 22
Q ss_pred cc-hhcccccccccchHHhhhhcCCcccCC
Q psy5570 197 HG-IYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 197 P~-l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
.+ ..++ .+||.+.++.||+|++||
T Consensus 106 ~d~~~ei-----~eglr~~a~kfgvpivGG 130 (324)
T COG2144 106 EDQAREI-----LEGLRKGARKFGVPIVGG 130 (324)
T ss_pred HHHHHHH-----HHHHHHHHHhcCCceecC
Confidence 22 5555 889999999999999976
No 104
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=98.54 E-value=4.9e-08 Score=114.10 Aligned_cols=50 Identities=74% Similarity=1.156 Sum_probs=49.0
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||++..|+|+|.++|||||++||.|||+++|++|++|+||+|++.
T Consensus 396 C~~~~qf~v~~g~L~~~~~qRS~D~~lG~pfNi~~ya~L~~~iA~~~gl~ 445 (514)
T PTZ00164 396 CHLLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLR 445 (514)
T ss_pred CceEEEEEEeCCEEEEEEEEehhhhhhcchhhHHHHHHHHHHHHHHhCCE
Confidence 99999999999999999999999999999999999999999999999976
No 105
>PRK00784 cobyric acid synthase; Provisional
Probab=98.53 E-value=1.4e-07 Score=110.41 Aligned_cols=90 Identities=20% Similarity=0.259 Sum_probs=71.8
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHH-cCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQV-CGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~-aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
+.||+|+.+|-.-|- +-..+|++ +|++++.++. ...+.++|+|+||||+++...++ ++++..+.
T Consensus 251 ~~~i~v~~~~~a~~f-~nl~~l~~~~g~~v~~~s~------~~~l~~~d~lilpGg~~~~~~~~--------~~~~~~l~ 315 (488)
T PRK00784 251 ALRIAVIRLPRISNF-TDFDPLRAEPGVDVRYVRP------GEPLPDADLVILPGSKNTIADLA--------WLRESGWD 315 (488)
T ss_pred ceEEEEEeCCCcCCc-cChHHHhhcCCCeEEEECC------ccccccCCEEEECCccchHHHHH--------HHHHcCHH
Confidence 468999995544433 66778887 9999888653 22577999999999999766443 35677899
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+.|++++++ |+|++|||.|+|+|.+.
T Consensus 316 ~~i~~~~~~-g~pilg~C~G~~~L~~~ 341 (488)
T PRK00784 316 EAIRAHARR-GGPVLGICGGYQMLGRR 341 (488)
T ss_pred HHHHHHHHc-CCeEEEECHHHHHHhhh
Confidence 999999984 99999999999999984
No 106
>PRK00758 GMP synthase subunit A; Validated
Probab=98.52 E-value=2.1e-07 Score=95.08 Aligned_cols=85 Identities=21% Similarity=0.328 Sum_probs=59.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCc-cEEEEcCCcCccccccchhHHHHHHhhchhHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRF-KGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQL 751 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~-d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v 751 (875)
|+|+ +.|....+.+..+|+++|+++.++... ....+++++ |+||||||.+. .|+ .. +
T Consensus 2 i~ii-d~~~~~~~~i~~~l~~~g~~~~~~~~~---~~~~~l~~~~dgivi~Gg~~~--------~~~------~~----~ 59 (184)
T PRK00758 2 IVVV-DNGGQYNHLIHRTLRYLGVDAKIIPNT---TPVEEIKAFEDGLILSGGPDI--------ERA------GN----C 59 (184)
T ss_pred EEEE-ECCCchHHHHHHHHHHcCCcEEEEECC---CCHHHHhhcCCEEEECCCCCh--------hhc------cc----c
Confidence 5555 888888889999999999988776532 123346777 99999998732 111 11 2
Q ss_pred HHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 752 NKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 752 ~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
++++.+.++|+||||.|+|+|.++ +.|.
T Consensus 60 ~~~l~~~~~PilGIC~G~Q~L~~a--~Gg~ 87 (184)
T PRK00758 60 PEYLKELDVPILGICLGHQLIAKA--FGGE 87 (184)
T ss_pred HHHHHhCCCCEEEEeHHHHHHHHh--cCcE
Confidence 233422489999999999999986 4444
No 107
>PRK06490 glutamine amidotransferase; Provisional
Probab=98.52 E-value=4.8e-07 Score=96.69 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=73.2
Q ss_pred ccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 668 KKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
..+|||.||...+++...-+...|++.|+++.++...+=...+.+++++|++||.||-.. ..+. .-|+. ..
T Consensus 5 ~~~~~vlvi~h~~~~~~g~l~~~l~~~g~~~~v~~~~~~~~~p~~l~~~dgvii~Ggp~~--~~d~-~~wi~------~~ 75 (239)
T PRK06490 5 RDKRPVLIVLHQERSTPGRVGQLLQERGYPLDIRRPRLGDPLPDTLEDHAGAVIFGGPMS--ANDP-DDFIR------RE 75 (239)
T ss_pred CCCceEEEEecCCCCCChHHHHHHHHCCCceEEEeccCCCCCCCcccccCEEEEECCCCC--CCCC-chHHH------HH
Confidence 467899999999999999999999999998887643200011335889999999987542 2222 13532 35
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+.|++++++ ++|+||||.|+|+|.++
T Consensus 76 ~~~i~~~~~~-~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 76 IDWISVPLKE-NKPFLGICLGAQMLARH 102 (239)
T ss_pred HHHHHHHHHC-CCCEEEECHhHHHHHHH
Confidence 6778888874 99999999999999995
No 108
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=98.51 E-value=3e-07 Score=94.63 Aligned_cols=91 Identities=14% Similarity=0.231 Sum_probs=65.2
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||.||-...+- -+.++.+|++.|.++.++...+. ...+++++|+|||.||-...+ | .+.+.+.
T Consensus 2 ~~iliid~~dsf-~~~i~~~l~~~g~~~~v~~~~~~--~~~~l~~~d~iIi~gGp~~~~-------~------~~~~~~~ 65 (190)
T PRK06895 2 TKLLIINNHDSF-TFNLVDLIRKLGVPMQVVNVEDL--DLDEVENFSHILISPGPDVPR-------A------YPQLFAM 65 (190)
T ss_pred cEEEEEeCCCch-HHHHHHHHHHcCCcEEEEECCcc--ChhHhccCCEEEECCCCCChH-------H------hhHHHHH
Confidence 689998666655 55589999999999998875432 234577899999887764222 1 1224556
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
+++ ++ .++|+||||.|+|+|+++ ++|.
T Consensus 66 i~~-~~-~~~PiLGIClG~Qlla~~--~Gg~ 92 (190)
T PRK06895 66 LER-YH-QHKSILGVCLGHQTLCEF--FGGE 92 (190)
T ss_pred HHH-hc-CCCCEEEEcHHHHHHHHH--hCCe
Confidence 666 45 489999999999999996 5554
No 109
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.50 E-value=1.6e-07 Score=109.29 Aligned_cols=80 Identities=25% Similarity=0.427 Sum_probs=57.5
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCC-eeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGF-EVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~-~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
|||+|+. ..+..+||+.+|. ++.+++.+ ++.+|.++|+||||||... .. +.+ ...+.+
T Consensus 1 m~iGvla------l~sv~~al~~lg~~~~~vv~~~----~~~~l~~~D~lILPGG~~~----~~-----~~l--~~~l~~ 59 (476)
T PRK06278 1 MEIGLLD------IKGSLPCFENFGNLPTKIIDEN----NIKEIKDLDGLIIPGGSLV----ES-----GSL--TDELKK 59 (476)
T ss_pred CEEEEEe------hhhHHHHHHHhcCCCcEEEEeC----ChHHhccCCEEEECCCchh----hc-----chH--HHHHHH
Confidence 5788883 5667788999987 77776654 3566899999999998521 00 001 234555
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++++ |+|+||||.|||||.+.
T Consensus 60 ~i~~~----g~pvlGICgG~QmLg~~ 81 (476)
T PRK06278 60 EILNF----DGYIIGICSGFQILSEK 81 (476)
T ss_pred HHHHc----CCeEEEEcHHHHhcccc
Confidence 55554 89999999999999986
No 110
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=98.50 E-value=8.5e-07 Score=90.14 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=73.5
Q ss_pred EEEEecCCCCCHHHH---HHHHHHcC-------CeeEEEEeec--ccc--c--------ccCccCccEEEEcCCcCcccc
Q psy5570 673 IAVLREEGINGDREM---SAMAQVCG-------FEVWDITVQD--LLE--N--------KITLDRFKGLVFPGGFSYADA 730 (875)
Q Consensus 673 VaIlv~pG~n~~~e~---~~A~~~aG-------~~v~~V~~~d--l~~--~--------~~~l~~~d~lvlPGGfS~gD~ 730 (875)
|+|+++||++ ..|+ ...|+.++ +++.+++.+. +.. + ..+..++|.|++|||....
T Consensus 1 i~il~~~g~~-~~~~~~~~dv~~~a~~~~~~~~~~v~~vs~~~~~v~~~~g~~i~~d~~~~~~~~~D~liipgg~~~~-- 77 (185)
T cd03136 1 FGFLLLPGFS-LLALASAIEPLRAANRLAGRELYRWRVLSLDGAPVTSSNGLRVAPDAALEDAPPLDYLFVVGGLGAR-- 77 (185)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHHHHHhcCCcceEEEEEcCCCCeeecCCCcEEeCCccccccCCCCEEEEeCCCCcc--
Confidence 5789999999 5544 44565553 7777776531 100 0 1134689999999986522
Q ss_pred ccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 731 LGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 731 l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
+ ..++.+.+.|+++.++ ++.+.+||.|.++|.++|+|.|++.|.
T Consensus 78 ~----------~~~~~~~~~l~~~~~~-~~~i~aic~g~~~La~aGll~g~~~t~ 121 (185)
T cd03136 78 R----------AVTPALLAWLRRAARR-GVALGGIDTGAFLLARAGLLDGRRATV 121 (185)
T ss_pred c----------cCCHHHHHHHHHHHhc-CCEEEEEcHHHHHHHHccccCCCeeEE
Confidence 3 3478899999999985 999999999999999999999998655
No 111
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.49 E-value=4.9e-07 Score=104.90 Aligned_cols=92 Identities=22% Similarity=0.279 Sum_probs=71.5
Q ss_pred ceEEEEEecCCCCCHH-HHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 670 VISIAVLREEGINGDR-EMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~-e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
+.+|||+++|=+|--+ |-..+|++.|+++..+... .+..+.++|+|+||||++. + .+..++++..+.
T Consensus 245 ~~~iava~d~af~f~y~e~~~~L~~~g~~~~~~~~~----~~~~l~~~D~lilpGG~~~-~-------~~~~l~~~~~~~ 312 (451)
T PRK01077 245 GVRIAVARDAAFNFYYPENLELLRAAGAELVFFSPL----ADEALPDCDGLYLGGGYPE-L-------FAAELAANTSMR 312 (451)
T ss_pred CceEEEEecCcccccHHHHHHHHHHCCCEEEEeCCc----CCCCCCCCCEEEeCCCchh-h-------HHHHHhhCchhH
Confidence 4689999999666443 4467899999888776531 1334779999999999962 1 123456678899
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
+.|++|.+ +|+|++|||.|+|+|.+
T Consensus 313 ~~i~~~~~-~g~~i~aiCgG~~~L~~ 337 (451)
T PRK01077 313 ASIRAAAA-AGKPIYAECGGLMYLGE 337 (451)
T ss_pred HHHHHHHH-cCCCEEEEcHHHHHHHh
Confidence 99999998 49999999999999988
No 112
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.48 E-value=4.9e-07 Score=104.83 Aligned_cols=92 Identities=18% Similarity=0.292 Sum_probs=73.0
Q ss_pred ceEEEEEecCCCCCH-HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 670 VISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~-~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
+++|||+.++-+|=- .+-..+|++.|+++..+... . +..+.++|+|+||||++ .-++..++++..++
T Consensus 244 ~~~Iava~d~afnFy~~~~~~~L~~~g~~~~~~~~~--~--d~~l~~~d~l~ipGG~~--------~~~~~~l~~~~~~~ 311 (449)
T TIGR00379 244 YVRIAVAQDQAFNFYYQDNLDALTHNAAELVPFSPL--E--DTELPDVDAVYIGGGFP--------ELFAEELSQNQALR 311 (449)
T ss_pred CcEEEEEechhhceeHHHHHHHHHHCCCEEEEECCc--c--CCCCCCCCEEEeCCcHH--------HHHHHHHHhhhHHH
Confidence 479999999977632 25567899999888776531 1 23467999999999996 33445667788999
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
+.|++|+++ |+|++|||.|||+|.+
T Consensus 312 ~~i~~~~~~-G~pv~g~CgG~~~L~~ 336 (449)
T TIGR00379 312 DSIKTFIHQ-GLPIYGECGGLMYLSQ 336 (449)
T ss_pred HHHHHHHHc-CCCEEEEcHHHHHHHh
Confidence 999999985 9999999999999998
No 113
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=98.46 E-value=8.3e-08 Score=87.91 Aligned_cols=91 Identities=21% Similarity=0.100 Sum_probs=63.7
Q ss_pred CceEEEEEecCCcEEEEEEecCCCccc--ccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccccccc
Q psy5570 118 ADVAVVALVHNDLRGAATSIGEQPIKG--LVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK 195 (875)
Q Consensus 118 sDaaV~~~~~~~~~g~ams~G~~p~~~--~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g 195 (875)
.|++|++++ ........+-+..+... ..|||.++..||.+++++|+++|+.++ -+.+++++- +..
T Consensus 2 dDaavi~~~-~~~~~~~~~d~~~~~~~~~~~~p~~~g~~av~~~~sDl~a~Ga~P~-~~~~~l~~~-----------~~~ 68 (96)
T PF00586_consen 2 DDAAVIRIP-DGKRLVVSTDGFGTSVHFAFMDPYDGGWKAVAEALSDLAAMGAKPL-AILDSLGLP-----------NPE 68 (96)
T ss_dssp SSSEEEEET-STEEEEEEEEEEETHHHHHTCTHHHHHHHHHHHHHHHHHTTTEEEE-EEEEEEEES-----------TTS
T ss_pred CceEEEEcC-CCCeEEEEEEeccCcccccccCHHHHHHHHHHHHHHHHHhcCCeee-EEEEEEEcC-----------CCC
Confidence 599999986 23333333333333332 779999999999999999999998555 477777652 001
Q ss_pred Ccc-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 196 NHG-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 196 ~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
.++ +-++ ++|+.++|+++|+|++||+
T Consensus 69 ~~~~l~~~-----~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 69 SPEELKEI-----VKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp BHHHHHHH-----HHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHH-----HHHHHHHHHHhCCcEeCcC
Confidence 222 4444 8999999999999999874
No 114
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=98.41 E-value=5.7e-07 Score=91.62 Aligned_cols=83 Identities=20% Similarity=0.286 Sum_probs=60.3
Q ss_pred EEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHH
Q psy5570 674 AVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNK 753 (875)
Q Consensus 674 aIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~ 753 (875)
+|+ +.|+. +.++++++++|+++.++.... ...+....++|+|||+||-. +.-+ .....+.+++
T Consensus 2 ~i~-d~g~~--~~~~~~l~~~G~~~~~~~~~~-~~~~~~~~~~dgiil~GG~~--~~~~-----------~~~~~~~~~~ 64 (178)
T cd01744 2 VVI-DFGVK--HNILRELLKRGCEVTVVPYNT-DAEEILKLDPDGIFLSNGPG--DPAL-----------LDEAIKTVRK 64 (178)
T ss_pred EEE-ecCcH--HHHHHHHHHCCCeEEEEECCC-CHHHHhhcCCCEEEECCCCC--ChhH-----------hHHHHHHHHH
Confidence 444 76665 788999999999998886541 11122345799999999953 1111 1345677888
Q ss_pred HHHCCCceEEEEehhHHHHHh
Q psy5570 754 FIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 754 f~~r~g~~vLGICnGfQiL~e 774 (875)
++++ ++|+||||.|+|+|..
T Consensus 65 ~~~~-~~PvlGIC~G~Q~l~~ 84 (178)
T cd01744 65 LLGK-KIPIFGICLGHQLLAL 84 (178)
T ss_pred HHhC-CCCEEEECHHHHHHHH
Confidence 8885 8999999999999988
No 115
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.40 E-value=1.4e-06 Score=89.27 Aligned_cols=101 Identities=16% Similarity=0.170 Sum_probs=73.6
Q ss_pred EEEEecCCCCCHHHH---HHHHHH------------cCCeeEEEEeec-cc-----------ccccCccCccEEEEcCCc
Q psy5570 673 IAVLREEGINGDREM---SAMAQV------------CGFEVWDITVQD-LL-----------ENKITLDRFKGLVFPGGF 725 (875)
Q Consensus 673 VaIlv~pG~n~~~e~---~~A~~~------------aG~~v~~V~~~d-l~-----------~~~~~l~~~d~lvlPGGf 725 (875)
|+|+++||+. ..++ ..+|+. .++++.+++... .. ....+.+++|+|++|||.
T Consensus 1 i~ill~~gf~-~~~~~~~~e~f~~an~~~~~~~~~~~~~~v~~vs~~~~~v~s~~g~~i~~d~~~~~~~~~D~liIpgg~ 79 (195)
T cd03138 1 VTLLAYPGAL-ASSLAGLLDLLRAANRLARRQQGGAPPFEVRLVSLDGGPVLLAGGILILPDATLADVPAPDLVIVPGLG 79 (195)
T ss_pred CEEEEcCCch-HHHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEEcCCCCeeecCCCceecccccccccCCCCEEEECCCc
Confidence 5788899998 5444 333433 467887776431 00 011235689999999987
Q ss_pred Cccc--cccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 726 SYAD--ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 726 S~gD--~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
...+ .+. .++.+.+.++++.++ ++++.+||+|.++|.++|+|.|.+.|.
T Consensus 80 ~~~~~~~~~----------~~~~l~~~l~~~~~~-~~~i~aic~G~~~La~agll~g~~~t~ 130 (195)
T cd03138 80 GDPDELLLA----------DNPALIAWLRRQHAN-GATVAAACTGVFLLAEAGLLDGRRATT 130 (195)
T ss_pred CCchhhhhh----------ccHHHHHHHHHHHHc-CCEEEEecHHHHHHHHccCcCCCeeee
Confidence 6544 233 378899999999985 999999999999999999999987665
No 116
>PRK06186 hypothetical protein; Validated
Probab=98.38 E-value=1.3e-06 Score=92.72 Aligned_cols=87 Identities=17% Similarity=0.196 Sum_probs=60.2
Q ss_pred EEEEEecCCCCCH--HHHHHHHHHc----CCeeEEEEee--cccccccCccCccEEEEcCCcCccccccchhHHHHHHhh
Q psy5570 672 SIAVLREEGINGD--REMSAMAQVC----GFEVWDITVQ--DLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLL 743 (875)
Q Consensus 672 kVaIlv~pG~n~~--~e~~~A~~~a----G~~v~~V~~~--dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~ 743 (875)
+||++=.|=.-.| .++..||+.+ +.++.+.|+. ++.. +..|+++|+|++||||.+ |+ |-
T Consensus 3 ~IalVGKY~~~~daY~Sv~eal~ha~~~~~~~~~i~wi~s~~l~~-~~~l~~~dgilvpgGfg~----rg---~~----- 69 (229)
T PRK06186 3 RIALVGDYNPDVTAHQAIPLALDLAAAVLGLPVDYEWLPTPEITD-PEDLAGFDGIWCVPGSPY----RN---DD----- 69 (229)
T ss_pred EEEEEECCcCCcHHHHHHHHHHHHHHHhcCCeeEEEEEchhhcCC-hhhHhhCCeeEeCCCCCc----cc---Hh-----
Confidence 6777755522223 4667788876 5778888875 4433 246899999999999863 33 33
Q ss_pred chhHHHHHHHHHHCCCceEEEEehhHHH-HHh
Q psy5570 744 NEGIKTQLNKFIARSDTFSFGVCNGCQL-MNL 774 (875)
Q Consensus 744 ~~~i~~~v~~f~~r~g~~vLGICnGfQi-L~e 774 (875)
..+.+++...+ .+.|+||||.|||+ ++|
T Consensus 70 --Gki~ai~~Are-~~iP~LGIClGmQ~avIe 98 (229)
T PRK06186 70 --GALTAIRFARE-NGIPFLGTCGGFQHALLE 98 (229)
T ss_pred --HHHHHHHHHHH-cCCCeEeechhhHHHHHH
Confidence 34456666666 49999999999996 455
No 117
>PRK05385 phosphoribosylaminoimidazole synthetase; Provisional
Probab=98.36 E-value=9.5e-07 Score=98.32 Aligned_cols=92 Identities=9% Similarity=-0.164 Sum_probs=64.6
Q ss_pred cCceEEEEEecC-CcEEEEEEecCCCcc-----cccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcc
Q psy5570 117 LADVAVVALVHN-DLRGAATSIGEQPIK-----GLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSG 190 (875)
Q Consensus 117 ~sDaaV~~~~~~-~~~g~ams~G~~p~~-----~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~ 190 (875)
+.|++|++++.+ ....++++++.-... ..-+|+.-+..||+.++++|+|+|+.+.. +.+++++-
T Consensus 37 GdDaav~~~~~~~~~~~lv~t~D~~~~~~~~~~~~~~~~~iG~~av~~n~sDIaamGa~P~~-~~~~l~~~--------- 106 (327)
T PRK05385 37 GGFGGLFDLPKGYKEPVLVSGTDGVGTKLKLAIDLGKHDTIGIDLVAMCVNDLLVQGAEPLF-FLDYIATG--------- 106 (327)
T ss_pred cCccEEEecccccCCcceeeccccccchhHHHHHhCCHhhHHHHHHHHHHHHHHHcCCCHHH-HHHHHhcC---------
Confidence 359999987521 134578888864221 12257889999999999999999986544 55666541
Q ss_pred cccccCcc-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 191 RFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 191 ~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
...++ +.++ .+||.++|+++|+|++||.
T Consensus 107 ---~~~~~~~~~~-----~~Gi~~~~~~~g~~ivGGd 135 (327)
T PRK05385 107 ---KLDPEVAAQV-----VKGIAEGCEQAGCALIGGE 135 (327)
T ss_pred ---CCCHHHHHHH-----HHHHHHHHHHcCCeEeCcc
Confidence 01222 5455 8999999999999999865
No 118
>cd00351 TS_Pyrimidine_HMase Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa,
Probab=98.36 E-value=2.9e-07 Score=96.89 Aligned_cols=50 Identities=70% Similarity=0.957 Sum_probs=48.7
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
|+++.||++..|+|++.++|||+|+++|.|||+++|+.|+.++|+.+++.
T Consensus 144 C~~~~qf~v~~g~L~~~~~~RS~D~~~g~~~N~~~~~~L~~~iA~~~g~~ 193 (215)
T cd00351 144 CHTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASYALLTEMIARVTGLE 193 (215)
T ss_pred ceEEEEEEEeCCEEEEEEEehhhhhhhhhhhhHHHHHHHHHHHHHhcCCE
Confidence 89999999999999999999999999999999999999999999999876
No 119
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.35 E-value=5.9e-07 Score=85.58 Aligned_cols=87 Identities=18% Similarity=0.311 Sum_probs=63.0
Q ss_pred EEEEEecCCCC--CHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 672 SIAVLREEGIN--GDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 672 kVaIlv~pG~n--~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|+|...+|+- |...+...|+..- ++..++.+|+..++-. .++|+||||| ++++++|.. |.... .+
T Consensus 1 ~v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~I~~~~~~-~~ad~lVlPG-Ga~~~~~~~--------L~~~g-~~ 68 (114)
T cd03144 1 NVLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADELAVGPWE-SKTALLVVPG-GADLPYCRA--------LNGKG-NR 68 (114)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHHHhcCchh-hCCCEEEECC-CChHHHHHH--------HHhhC-cH
Confidence 36777777753 1234455555543 6677777777766533 5899999999 888998865 55556 89
Q ss_pred HHHHHHHCCCceEEEEehhHHH
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQL 771 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQi 771 (875)
.|++|++ +|+|.||||.|-=+
T Consensus 69 ~i~~~v~-~g~p~LGIClGAy~ 89 (114)
T cd03144 69 RIRNFVR-NGGNYLGICAGAYL 89 (114)
T ss_pred HHHHHHH-CCCcEEEEecCccc
Confidence 9999997 59999999988543
No 120
>PRK08250 glutamine amidotransferase; Provisional
Probab=98.35 E-value=1.9e-06 Score=91.91 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=68.6
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccc-cccchhHHHHHHhhchhHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYAD-ALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD-~l~~s~~~a~ail~~~~i~~ 749 (875)
|||.|+.--..+........+++.|+++.++....=..-+.++++||+||+.||-.... ..+. .-|+. .....+
T Consensus 1 m~i~vi~h~~~e~~g~~~~~~~~~g~~~~~~~~~~g~~~p~~~~~~d~vii~GGp~~~~~~~~~-~p~~~----~~~~~~ 75 (235)
T PRK08250 1 MRVHFIIHESFEAPGAYLKWAENRGYDISYSRVYAGEALPENADGFDLLIVMGGPQSPRTTREE-CPYFD----SKAEQR 75 (235)
T ss_pred CeEEEEecCCCCCchHHHHHHHHCCCeEEEEEccCCCCCCCCccccCEEEECCCCCChhhcccc-ccccc----hHHHHH
Confidence 68999988888888888888999999887754321001122467899999999954322 1111 11221 124567
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.|+++++. ++|+||||.|.|+|..+
T Consensus 76 ~i~~~~~~-~~PvlGIC~G~Qlla~a 100 (235)
T PRK08250 76 LINQAIKA-GKAVIGVCLGAQLIGEA 100 (235)
T ss_pred HHHHHHHc-CCCEEEEChhHHHHHHH
Confidence 78888884 99999999999999983
No 121
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=98.31 E-value=2.3e-06 Score=87.39 Aligned_cols=97 Identities=24% Similarity=0.343 Sum_probs=61.7
Q ss_pred EEEEecCCCCCHHHHHHHHHHcC---CeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCG---FEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG---~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
|+|+...-..........++.+| .++..+...+- ....+++++|+|||+||.+..++-. ..|+ ..+.+
T Consensus 2 i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~dgvil~Gg~~~~~~~~--~~~~------~~~~~ 72 (188)
T cd01741 2 ILILQHDTPEGPGLFEDLLREAGAETIEIDVVDVYAG-ELLPDLDDYDGLVILGGPMSVDEDD--YPWL------KKLKE 72 (188)
T ss_pred EEEEECCCCCCcchHHHHHHhcCCCCceEEEEecCCC-CCCCCcccCCEEEECCCCccCCccC--ChHH------HHHHH
Confidence 55553222221344566778888 46655443321 1124688999999999987542211 1232 35778
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
.++.++++ ++|++|||.|+|+|..+ +.|.
T Consensus 73 ~i~~~~~~-~~pilgiC~G~q~l~~~--lGG~ 101 (188)
T cd01741 73 LIRQALAA-GKPVLGICLGHQLLARA--LGGK 101 (188)
T ss_pred HHHHHHHC-CCCEEEECccHHHHHHH--hCCE
Confidence 88888885 89999999999999885 4444
No 122
>PRK07053 glutamine amidotransferase; Provisional
Probab=98.29 E-value=3.5e-06 Score=89.82 Aligned_cols=97 Identities=16% Similarity=0.102 Sum_probs=67.4
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
++|.|+.--=..+...+..+|++.|.++.++...+-.....+++++|+||++||-. +.+-.....|+. ...+.
T Consensus 3 ~~ilviqh~~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~lii~Ggp~-~~~d~~~~p~~~------~~~~~ 75 (234)
T PRK07053 3 KTAVAIRHVAFEDLGSFEQVLGARGYRVRYVDVGVDDLETLDALEPDLLVVLGGPI-GVYDDELYPFLA------PEIAL 75 (234)
T ss_pred ceEEEEECCCCCCChHHHHHHHHCCCeEEEEecCCCccCCCCccCCCEEEECCCCC-CCCCCCcCCcHH------HHHHH
Confidence 46888876666667889999999999888765421000123467899999999742 111111112432 46678
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
|++++++ ++|+||||.|.|+|+++
T Consensus 76 i~~~~~~-~~PvlGIC~G~Qlla~a 99 (234)
T PRK07053 76 LRQRLAA-GLPTLGICLGAQLIARA 99 (234)
T ss_pred HHHHHHC-CCCEEEECccHHHHHHH
Confidence 8888885 99999999999999984
No 123
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.28 E-value=3.5e-06 Score=74.47 Aligned_cols=89 Identities=27% Similarity=0.375 Sum_probs=69.0
Q ss_pred EEEEecCCCCCH--HHHHHHHHHcCCeeEEEEeeccccc-ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 673 IAVLREEGINGD--REMSAMAQVCGFEVWDITVQDLLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 673 VaIlv~pG~n~~--~e~~~A~~~aG~~v~~V~~~dl~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
|+++..++.+.. .....+|+.+|+++..++..+.... .....++|+|++|||........ ++..+.+
T Consensus 1 v~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~~----------~~~~~~~ 70 (115)
T cd01653 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------RDEALLA 70 (115)
T ss_pred CEEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhhc----------cCHHHHH
Confidence 467778888864 5678899999999999876532111 23467999999999988655553 3567888
Q ss_pred HHHHHHHCCCceEEEEehhHHHH
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLM 772 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL 772 (875)
.++++..+ +++++|||.|+|+|
T Consensus 71 ~i~~~~~~-~~~i~~~c~g~~~l 92 (115)
T cd01653 71 LLREAAAA-GKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHc-CCEEEEECchhHhH
Confidence 99999885 99999999999998
No 124
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.26 E-value=1.1e-06 Score=102.60 Aligned_cols=87 Identities=22% Similarity=0.319 Sum_probs=64.7
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
.+|||+..|-.-|-++ ..+|+.. + .|.+..+ +..|.++|+|+||||++....+. .+++..+.+.
T Consensus 248 ~~Iav~~~~~~~nf~~-~~~L~~~--~--~~~f~~~---~~~l~~~d~lilpGg~~~~~~~~--------~l~~~~~~~~ 311 (475)
T TIGR00313 248 IRIGVVRLPRISNFTD-FEPLRYE--A--FVKFLDL---DDSLTGCDAVIIPGSKSTIADLY--------ALKQSGFAEE 311 (475)
T ss_pred cEEEEEcCCcccCccC-hHHHhhC--C--CeEEeCC---ccccccCCEEEECCcchHHHHHH--------HHHhcChHHH
Confidence 6899998566555553 3466665 2 3333322 22577999999999998655442 4667789999
Q ss_pred HHHHHHCCCceEEEEehhHHHHHh
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
|++|+++ |+|++|||.|||+|.+
T Consensus 312 i~~~~~~-G~pvlgiCgG~q~Lg~ 334 (475)
T TIGR00313 312 ILDFAKE-GGIVIGICGGYQMLGK 334 (475)
T ss_pred HHHHHHc-CCcEEEEcHHHHHhhh
Confidence 9999984 9999999999999999
No 125
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=98.22 E-value=3.3e-05 Score=82.58 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=57.3
Q ss_pred EEEEEecCCCCCH--HHHHHHHHHc----CCeeEEEEee--ccccc--ccCccCccEEEEcCCcCccccccchhHHHHHH
Q psy5570 672 SIAVLREEGINGD--REMSAMAQVC----GFEVWDITVQ--DLLEN--KITLDRFKGLVFPGGFSYADALGSAKGWAASL 741 (875)
Q Consensus 672 kVaIlv~pG~n~~--~e~~~A~~~a----G~~v~~V~~~--dl~~~--~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ai 741 (875)
+||++=.+..-.+ .+...+|+.+ +.++..++.. ++... +..++++|+||+|||+++.+.
T Consensus 2 ~i~lvg~~~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~~----------- 70 (235)
T cd01746 2 RIALVGKYVELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRGV----------- 70 (235)
T ss_pred EEEEEECCcCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcch-----------
Confidence 5676655532222 3455566554 4566666554 22222 245789999999999975331
Q ss_pred hhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 742 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 742 l~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
....+.++..+++ ++|+||||+|||+|..
T Consensus 71 ---~~~~~~i~~~~~~-~~PvlGIClG~Q~l~~ 99 (235)
T cd01746 71 ---EGKILAIKYAREN-NIPFLGICLGMQLAVI 99 (235)
T ss_pred ---hhHHHHHHHHHHC-CceEEEEEhHHHHHHH
Confidence 2345567777774 9999999999999976
No 126
>TIGR03283 thy_syn_methano thymidylate synthase, methanogen type. Thymidylate synthase makes dTMP for DNA synthesis, and is among the most widely distributed of all enzymes. Members of this protein family are encoded within a completed genome sequence if and only if that species is one of the methanogenenic archaea. In these species, tetrahydromethanopterin replaces tetrahydrofolate, The member from Methanobacterium thermoautotrophicum was shown to behave as a thymidylate synthase based on similar side reactions (the exchange of a characteristic proton with water), although the full reaction was not reconstituted. Partial sequence data showed no similarity to known thymidylate synthases simply because the region sequenced was from a distinctive N-terminal region not found in other thymidylate synthases. Members of this protein family appear, therefore, to a novel, tetrahydromethanopterin-dependent thymidylate synthase.
Probab=98.22 E-value=8.8e-07 Score=92.22 Aligned_cols=50 Identities=28% Similarity=0.298 Sum_probs=48.5
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
|+.+.||++..|+|++.++|||||+++|.|||+++|+.|+.++|+.+++.
T Consensus 129 C~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~ 178 (199)
T TIGR03283 129 CLQLVQFLIRDNKLYLTAFFRSNDVGGAWVANAIGLRRLQEYVAEKVGVE 178 (199)
T ss_pred CcEEEEEEEeCCEEEEEEEEhhhhhhchhhhHHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999976
No 127
>PLN02347 GMP synthetase
Probab=98.21 E-value=3.5e-06 Score=99.58 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=62.7
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCcc--CccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLD--RFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~--~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|+|+ +.|+..-+.+++++++.|..++++... .+...+. ++|+||||||-+... ... .+.+.+
T Consensus 12 ~IlII-D~G~~~t~~I~r~lrelgv~~~v~p~~---~~~~~i~~~~~dgIILsGGP~sv~--~~~---------~p~~~~ 76 (536)
T PLN02347 12 VVLIL-DYGSQYTHLITRRVRELGVYSLLLSGT---ASLDRIASLNPRVVILSGGPHSVH--VEG---------APTVPE 76 (536)
T ss_pred EEEEE-ECCCcHHHHHHHHHHHCCCeEEEEECC---CCHHHHhcCCCCEEEECCCCCccc--ccC---------CchhhH
Confidence 68876 999999999999999999988876433 1122233 689999999854221 110 111222
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
.+.+++.+.+.|+||||.|+|+|+++ ++|.
T Consensus 77 ~i~~~~~~~~iPILGIClG~QlLa~a--lGG~ 106 (536)
T PLN02347 77 GFFDYCRERGVPVLGICYGMQLIVQK--LGGE 106 (536)
T ss_pred HHHHHHHhcCCcEEEECHHHHHHHHH--cCCE
Confidence 33333322489999999999999995 5555
No 128
>PRK00074 guaA GMP synthase; Reviewed
Probab=98.20 E-value=2.3e-06 Score=100.89 Aligned_cols=89 Identities=17% Similarity=0.243 Sum_probs=63.2
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCc--cEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRF--KGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~--d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|+|| +.|+.+...++.+++++|..++++..+ ....+++++ |+||||||.+. ..+.. .+.+.
T Consensus 5 ~i~vl-D~Gsq~~~li~r~lrelg~~~~v~p~~---~~~~~l~~~~~dgIIlsGGp~s--v~~~~---------~p~~~- 68 (511)
T PRK00074 5 KILIL-DFGSQYTQLIARRVRELGVYSEIVPYD---ISAEEIRAFNPKGIILSGGPAS--VYEEG---------APRAD- 68 (511)
T ss_pred EEEEE-ECCCCcHHHHHHHHHHCCCeEEEEECC---CCHHHHhccCCCEEEECCCCcc--cccCC---------Ccccc-
Confidence 57776 889999999999999999998888653 112345544 99999999762 22210 11121
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
+..++ .++|+||||.|+|+|..+ +.|.
T Consensus 69 --~~i~~-~~~PvLGIC~G~QlLa~~--lGG~ 95 (511)
T PRK00074 69 --PEIFE-LGVPVLGICYGMQLMAHQ--LGGK 95 (511)
T ss_pred --HHHHh-CCCCEEEECHHHHHHHHH--hCCe
Confidence 23455 489999999999999984 4444
No 129
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=98.20 E-value=4.3e-06 Score=101.74 Aligned_cols=89 Identities=21% Similarity=0.183 Sum_probs=65.7
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEE-cCCcCccccccchhHHHHHHhhchhH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVF-PGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvl-PGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
..++|+|| +.|..+.+.+.++|++.|+++.++.... .....+..++|+||| ||.++..|. ..
T Consensus 515 ~~~~IlVI-D~gds~~~~l~~~L~~~G~~v~vv~~~~-~~~~~~~~~~DgLILsgGPGsp~d~---------------~~ 577 (717)
T TIGR01815 515 EGRRILLV-DHEDSFVHTLANYLRQTGASVTTLRHSH-AEAAFDERRPDLVVLSPGPGRPADF---------------DV 577 (717)
T ss_pred CCCEEEEE-ECCChhHHHHHHHHHHCCCeEEEEECCC-ChhhhhhcCCCEEEEcCCCCCchhc---------------cc
Confidence 45688887 8888778999999999999998875431 111112357899999 666765442 23
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+.+++.+++ ++|+||||.|+|+|+++
T Consensus 578 ~~~I~~~~~~-~iPvLGICLG~QlLa~a 604 (717)
T TIGR01815 578 AGTIDAALAR-GLPVFGVCLGLQGMVEA 604 (717)
T ss_pred HHHHHHHHHC-CCCEEEECHHHHHHhhh
Confidence 4566777774 89999999999999996
No 130
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.20 E-value=4.8e-06 Score=96.08 Aligned_cols=89 Identities=19% Similarity=0.200 Sum_probs=66.5
Q ss_pred eEEEEEecCCCCCHH-HHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 671 ISIAVLREEGINGDR-EMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~-e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+||||.++.-++=-| |-..+|+++ ++++.++. +.. ..+.++|+|+||||++. + .+..+..| ..++
T Consensus 234 ~~iavA~D~AF~FyY~enl~~L~~~-aelv~fSP--l~~--~~lp~~D~l~lpGG~~e---~-----~~~~L~~n-~~~~ 299 (433)
T PRK13896 234 PTVAVARDAAFCFRYPATIERLRER-ADVVTFSP--VAG--DPLPDCDGVYLPGGYPE---L-----HADALADS-PALD 299 (433)
T ss_pred CeEEEEEcCccceeCHHHHHHHHhc-CcEEEEcC--CCC--CCCCCCCEEEeCCCchh---h-----HHHHHHhC-CcHH
Confidence 689999988887553 567889998 76666543 222 23668999999999964 2 22333334 4449
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.|++++++ |+|++|||.|+|+|.+
T Consensus 300 ~i~~~~~~-G~pi~aeCGG~q~L~~ 323 (433)
T PRK13896 300 ELADRAAD-GLPVLGECGGLMALAE 323 (433)
T ss_pred HHHHHHHC-CCcEEEEehHHHHhhc
Confidence 99999984 9999999999999998
No 131
>PRK05380 pyrG CTP synthetase; Validated
Probab=98.20 E-value=4.4e-06 Score=97.62 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=64.6
Q ss_pred cceEEEEEecCCCCCH--HHHHHHHHHcCC----eeEEEEee--cccc--cccCccCccEEEEcCCcCccccccchhHHH
Q psy5570 669 KVISIAVLREEGINGD--REMSAMAQVCGF----EVWDITVQ--DLLE--NKITLDRFKGLVFPGGFSYADALGSAKGWA 738 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~--~e~~~A~~~aG~----~v~~V~~~--dl~~--~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a 738 (875)
...+||++=.|-.-.| .++..||+.+|+ ++.+.|+. ++.. ....++++|+|+|||||. +..
T Consensus 287 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG--~~~------- 357 (533)
T PRK05380 287 GEVTIALVGKYVELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFG--ERG------- 357 (533)
T ss_pred CceEEEEEeCccCCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCC--ccc-------
Confidence 4568999877744333 677889988764 56777765 3332 234688999999999974 321
Q ss_pred HHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 739 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 739 ~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+...++++...++ ++|+||||.|||+|.-
T Consensus 358 -----~~g~i~~i~~a~e~-~iPiLGIClGmQll~v 387 (533)
T PRK05380 358 -----IEGKILAIRYAREN-NIPFLGICLGMQLAVI 387 (533)
T ss_pred -----cccHHHHHHHHHHC-CCcEEEEchHHHHHHH
Confidence 12345667777774 9999999999999986
No 132
>PRK00956 thyA thymidylate synthase; Provisional
Probab=98.19 E-value=1.1e-06 Score=92.09 Aligned_cols=50 Identities=28% Similarity=0.304 Sum_probs=48.4
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
|+.+.||++..|+|++.++|||||+++|.|||+.+|+.|+.++|+.+++.
T Consensus 132 C~~~~qf~v~~g~L~~~~~~RS~D~~~g~p~N~~~~~~L~~~iA~~~gl~ 181 (208)
T PRK00956 132 CLQLVDFLIRDGKLYLTVLFRSNDAGGAFHANAIGLIKLGEYVAEKVGVE 181 (208)
T ss_pred CeEEEEEEEeCCEEEEEEEEhhhhhhcccchHHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999876
No 133
>PLN02327 CTP synthase
Probab=98.17 E-value=7.2e-06 Score=96.11 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=61.2
Q ss_pred cceEEEEEecCCCCCH--HHHHHHHHHc----CCeeEEEEee--cccccc------------cCccCccEEEEcCCcCcc
Q psy5570 669 KVISIAVLREEGINGD--REMSAMAQVC----GFEVWDITVQ--DLLENK------------ITLDRFKGLVFPGGFSYA 728 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~--~e~~~A~~~a----G~~v~~V~~~--dl~~~~------------~~l~~~d~lvlPGGfS~g 728 (875)
...+||++=.|=.-.| .++..||+.| |.++.+.|+. ++.... ..|.++|+|++|||| |
T Consensus 296 ~~v~IalVGKY~~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGf--G 373 (557)
T PLN02327 296 EPVRIAMVGKYTGLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGF--G 373 (557)
T ss_pred CceEEEEEecccCCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCC--C
Confidence 3468999866633223 4566777765 5778888875 443221 348899999999998 3
Q ss_pred ccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 729 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 729 D~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
| ++ + .....+++...+ .++|+||||+|||+++-
T Consensus 374 ~--~~---~-------~G~i~ai~~are-~~iP~LGIClGmQl~vi 406 (557)
T PLN02327 374 D--RG---V-------EGKILAAKYARE-NKVPYLGICLGMQIAVI 406 (557)
T ss_pred C--cc---c-------ccHHHHHHHHHH-cCCCEEEEcHHHHHHHH
Confidence 3 22 1 123344555556 49999999999999987
No 134
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.16 E-value=3.4e-06 Score=84.55 Aligned_cols=56 Identities=21% Similarity=0.368 Sum_probs=48.2
Q ss_pred ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 710 KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 710 ~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
+..+.++|+|+||||+.- -.+..++++..++++|++++++ |+||+|||.|+|+|.+
T Consensus 2 ~~~~~~~D~i~lpGg~pe--------~~~~~l~~~~~~~~~I~~~~~~-G~pi~aeCGG~~~Lg~ 57 (158)
T PF07685_consen 2 EELPPDADGIYLPGGYPE--------LFALELSRNRGLKEAIREAAEA-GGPIYAECGGYQYLGE 57 (158)
T ss_pred CCCCCCCCEEEECCCcHH--------HHHHHHHHHhCHHHHHHHHHHc-CCcEEEEchHHHHHHH
Confidence 456889999999999963 2335677889999999999995 9999999999999988
No 135
>PRK00943 selenophosphate synthetase; Provisional
Probab=98.16 E-value=1.7e-05 Score=89.18 Aligned_cols=94 Identities=17% Similarity=0.009 Sum_probs=66.8
Q ss_pred cCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCc
Q psy5570 110 VGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFS 189 (875)
Q Consensus 110 vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~ 189 (875)
+||. .+.|++|+.++ ....+++|++.-.. ...|||.-++.||.-++..|+|+|+.++. +.+++.
T Consensus 44 ~g~~--~gdDaavi~~~--~~~~lv~t~D~~~p-~~~~p~~~G~~Av~~~~sDiaAmGa~P~~-~l~~l~---------- 107 (347)
T PRK00943 44 VGNE--TRDDAAVYDLN--DGTGIISTTDFFMP-IVDDPFDFGRIAATNAISDIYAMGGKPIM-AIAILG---------- 107 (347)
T ss_pred ecCC--CCCceEEEEeC--CCcEEEEEcccCCC-CCCCHHHHHHHHHHHHhhHhhccCccHHh-Hhheee----------
Confidence 4663 35799999875 23467888887532 44799999999999999999999986543 434332
Q ss_pred cccccc-Cc-c-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 190 GRFAFK-NH-G-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 190 ~~w~~g-~P-~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
+|.+ .+ + +-+. .+||.++|+++|++++||-
T Consensus 108 --lp~~~~~~~~l~~i-----~~Gi~~~~~~~gv~lvGGd 140 (347)
T PRK00943 108 --WPINKLPPEVAREV-----LEGGRAACRQAGIPLAGGH 140 (347)
T ss_pred --cCcccCcHHHHHHH-----HHHHHHHHHHcCCceeccc
Confidence 2222 12 2 4444 8899999999999999753
No 136
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=98.15 E-value=6.8e-06 Score=83.91 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=53.9
Q ss_pred cCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCC-cCccccccchhHHHHHHhhchhHHHHHHHHHH
Q psy5570 678 EEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGG-FSYADALGSAKGWAASLLLNEGIKTQLNKFIA 756 (875)
Q Consensus 678 ~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGG-fS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~ 756 (875)
+-|..--..+..+|++.|.++..+...+-.....++.++|+||+.|| .+..|.. ....+.+.+.
T Consensus 5 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~dgvil~gG~~~~~~~~---------------~~~~i~~~~~ 69 (184)
T cd01743 5 DNYDSFTYNLVQYLRELGAEVVVVRNDEITLEELELLNPDAIVISPGPGHPEDAG---------------ISLEIIRALA 69 (184)
T ss_pred eCCCccHHHHHHHHHHcCCceEEEeCCCCCHHHHhhcCCCEEEECCCCCCcccch---------------hHHHHHHHHh
Confidence 44444456778899999999998876421111124678999888554 4432211 2333444455
Q ss_pred CCCceEEEEehhHHHHHhc
Q psy5570 757 RSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 757 r~g~~vLGICnGfQiL~el 775 (875)
+ ++|+||||.|+|+|..+
T Consensus 70 ~-~~PvlGIC~G~Qlla~~ 87 (184)
T cd01743 70 G-KVPILGVCLGHQAIAEA 87 (184)
T ss_pred c-CCCEEEECHhHHHHHHH
Confidence 3 79999999999999985
No 137
>PF00303 Thymidylat_synt: Thymidylate synthase; InterPro: IPR000398 Thymidylate synthase (2.1.1.45 from EC) [, ] catalyzes the reductive methylation of dUMP to dTMP with concomitant conversion of 5,10-methylenetetrahydrofolate to dihydrofolate: 5,10-methylenetetrahydrofolate + dUMP = dihydrofolate + dTMP This provides the sole de novo pathway for production of dTMP and is the only enzyme in folate metabolism in which the 5,10-methylenetetrahydrofolate is oxidised during one-carbon transfer []. The enzyme is essential for regulating the balanced supply of the 4 DNA precursors in normal DNA replication: defects in the enzyme activity affecting the regulation process cause various biological and genetic abnormalities, such as thymineless death []. The enzyme is an important target for certain chemotherapeutic drugs. Thymidylate synthase is an enzyme of about 30 to 35 Kd in most species except in protozoan and plants where it exists as a bifunctional enzyme that includes a dihydrofolate reductase domain []. A cysteine residue is involved in the catalytic mechanism (it covalently binds the 5,6-dihydro-dUMP intermediate). The sequence around the active site of this enzyme is conserved from phages to vertebrates.; GO: 0004799 thymidylate synthase activity, 0006231 dTMP biosynthetic process; PDB: 2AAZ_O 3DL5_D 2OIP_B 3DL6_E 3HJ3_C 1TSN_A 1TDU_B 3B5B_A 1KZJ_E 3B9H_A ....
Probab=98.15 E-value=1.6e-06 Score=94.19 Aligned_cols=50 Identities=54% Similarity=0.764 Sum_probs=47.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
|+.+.||++..|+|++.++|||||+++|.|||+.+|+.|+.++|+.+++.
T Consensus 151 C~~~~qf~vr~g~L~~~~~~RS~D~~~g~p~Ni~~~~~L~~~iA~~~g~~ 200 (269)
T PF00303_consen 151 CHQSIQFYVRDGKLNLTVYQRSNDAFLGLPFNIFQYALLQEMIARELGLK 200 (269)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred ceeeeEEEEECCEEEEEEEeecchhhhhhcccHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999876
No 138
>PRK11249 katE hydroperoxidase II; Provisional
Probab=98.11 E-value=1.1e-05 Score=97.75 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=76.8
Q ss_pred ccceEEEEEecCCCCCH--HHHHHHHHHcCCeeEEEEeec----------cccc----ccCccCccEEEEcCCcCccccc
Q psy5570 668 KKVISIAVLREEGINGD--REMSAMAQVCGFEVWDITVQD----------LLEN----KITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~--~e~~~A~~~aG~~v~~V~~~d----------l~~~----~~~l~~~d~lvlPGGfS~gD~l 731 (875)
.+.+||+||+++|+... ..+..+|+++|+++.+|+.+. +..+ ......||+|++|||....+
T Consensus 595 ~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~-- 672 (752)
T PRK11249 595 IKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIA-- 672 (752)
T ss_pred ccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHH--
Confidence 35679999999999743 245789999999999987530 1111 11123699999999754333
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCC
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 779 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLp 779 (875)
.+..+..+.+.|+++++. +|+|.+||.|.++|.++||.+
T Consensus 673 --------~L~~d~~al~fL~eaykH-gK~IAAiCaG~~LLaaAGL~~ 711 (752)
T PRK11249 673 --------DLADNGDARYYLLEAYKH-LKPIALAGDARKLKAALKLPD 711 (752)
T ss_pred --------HHhhCHHHHHHHHHHHHc-CCEEEEeCccHHHHHhcCCCC
Confidence 344588999999999985 999999999999999999954
No 139
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.09 E-value=6e-06 Score=86.59 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=71.1
Q ss_pred ccceEEEEEecCCCCCH---HHHHHHHHHc-CCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhh
Q psy5570 668 KKVISIAVLREEGINGD---REMSAMAQVC-GFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLL 743 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~---~e~~~A~~~a-G~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~ 743 (875)
+..++|++|-.-...-+ .+..+||+++ |+++..+...+-......|.++|+|+|||| +....++. ++
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l~~ad~I~l~GG-~~~~~~~~--------l~ 99 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDALLEADVIYVGGG-NTFNLLAQ--------WR 99 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHHhcCCEEEECCc-hHHHHHHH--------HH
Confidence 35568887744433211 2357899999 999988765431111346889999999995 65555544 55
Q ss_pred chhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 744 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 744 ~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
...+.+.+++.+++ |++++|||.|+|+|.+.
T Consensus 100 ~~~l~~~l~~~~~~-g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 100 EHGLDAILKAALER-GVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HcCHHHHHHHHHHC-CCEEEEECHhHHhhCCC
Confidence 66888999998875 99999999999999995
No 140
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=98.08 E-value=1.1e-05 Score=85.03 Aligned_cols=89 Identities=18% Similarity=0.196 Sum_probs=60.0
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeec--ccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQD--LLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~d--l~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
|+|.++-+.. .-...+...|++.|+++.++.... +......++++|+|||.||-...+ + ....+
T Consensus 1 ~~ilv~d~~~-~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~--~-----------~~~~~ 66 (214)
T PRK07765 1 MRILVVDNYD-SFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPE--R-----------AGASI 66 (214)
T ss_pred CeEEEEECCC-cHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChh--h-----------cchHH
Confidence 5677764443 334556778899999999886542 111111246899999999863221 1 12234
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
+.+++++++ ++|+||||.|+|+|..
T Consensus 67 ~~i~~~~~~-~~PiLGIC~G~Qlla~ 91 (214)
T PRK07765 67 DMVRACAAA-GTPLLGVCLGHQAIGV 91 (214)
T ss_pred HHHHHHHhC-CCCEEEEccCHHHHHH
Confidence 677777774 8999999999999988
No 141
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=98.06 E-value=1.5e-05 Score=83.09 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=64.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHH
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQL 751 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v 751 (875)
+++|+ +.|+.-..-+.+.+++.|.....++..+....+....+.|+|||.||-+. -+-.. .|+ +...+.|
T Consensus 3 ~ilIl-d~g~q~~~li~r~~re~g~v~~e~~~~~~~~~~~~~~~~~giIlsGgp~s-v~~~~--~w~------~~~~~~i 72 (198)
T COG0518 3 KILIL-DFGGQYLGLIARRLRELGYVYSEIVPYTGDAEELPLDSPDGIIISGGPMS-VYDED--PWL------PREKDLI 72 (198)
T ss_pred EEEEE-eCCCcHhHHHHHHHHHcCCceEEEEeCCCCcccccccCCCEEEEcCCCCC-Ccccc--ccc------hhHHHHH
Confidence 45555 77777677788999999954444444333333444556699999999842 22221 133 3456677
Q ss_pred HHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 752 NKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 752 ~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
.+... +++|+||||.|+|+|++ .+.|.
T Consensus 73 ~~~~~-p~~pvLGIC~G~Ql~A~--~lGg~ 99 (198)
T COG0518 73 KDAGV-PGKPVLGICLGHQLLAK--ALGGK 99 (198)
T ss_pred HHhCC-CCCCEEEEChhHHHHHH--HhCCE
Confidence 77666 58899999999999987 34444
No 142
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=98.06 E-value=5.5e-06 Score=87.32 Aligned_cols=88 Identities=25% Similarity=0.346 Sum_probs=47.6
Q ss_pred HHHHHHHHHcCCeeEEEEee-cccccccCccCccEEEEcCCcC------ccccccchhHHHHHHhhchhHHHHHHHHHHC
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-DLLENKITLDRFKGLVFPGGFS------YADALGSAKGWAASLLLNEGIKTQLNKFIAR 757 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-dl~~~~~~l~~~d~lvlPGGfS------~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r 757 (875)
.+-.++++.+|+.+..+... +...-+.-++.+|+|+||||.+ ||........+... .++ .+.-++.+...+
T Consensus 27 ~~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~-~rd-~~e~~l~~~a~~ 104 (217)
T PF07722_consen 27 ASYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDP-ERD-IFELALIRNALG 104 (217)
T ss_dssp HHHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHH-HHH-HHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCH-HHH-HHHHHHHHHHHh
Confidence 45578999999999998765 2111133467899999999995 34332222222211 111 233333343444
Q ss_pred CCceEEEEehhHHHHHh
Q psy5570 758 SDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 758 ~g~~vLGICnGfQiL~e 774 (875)
.++|+||||.|||+|.-
T Consensus 105 ~~~PilGICrG~Q~lnv 121 (217)
T PF07722_consen 105 RGKPILGICRGMQLLNV 121 (217)
T ss_dssp TT--EEEETHHHHHHHH
T ss_pred cCCCEEEEcHHHHHHHH
Confidence 69999999999999855
No 143
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=98.04 E-value=1.6e-05 Score=92.99 Aligned_cols=91 Identities=22% Similarity=0.270 Sum_probs=61.4
Q ss_pred cceEEEEEecCCCCCH--HHHHHHHHHcCC----eeEEEEee--ccccc-ccCccCccEEEEcCCcCccccccchhHHHH
Q psy5570 669 KVISIAVLREEGINGD--REMSAMAQVCGF----EVWDITVQ--DLLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAA 739 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~--~e~~~A~~~aG~----~v~~V~~~--dl~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ 739 (875)
..++||++-.|=.-.+ .++..||+.+|+ .+...|+. ++... ...|+++|+|+|||||... +
T Consensus 288 ~~v~IalVGKY~~~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~----~------ 357 (525)
T TIGR00337 288 HEVTIGIVGKYVELKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGER----G------ 357 (525)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCCh----h------
Confidence 4578999876633222 567889999886 35555543 33211 1237889999999999541 1
Q ss_pred HHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 740 SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 740 ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.....++++...++ +.|+||||+|||+|.-
T Consensus 358 ----~~g~i~ai~~a~e~-~iP~LGIClG~Qll~i 387 (525)
T TIGR00337 358 ----VEGKILAIKYAREN-NIPFLGICLGMQLAVI 387 (525)
T ss_pred ----hcChHHHHHHHHHc-CCCEEEEcHHHHHHHH
Confidence 12344566666664 8999999999999975
No 144
>cd02691 PurM-like2 AIR synthase (PurM) related protein, archaeal subgroup 2 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.
Probab=98.04 E-value=3.6e-05 Score=86.67 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=64.2
Q ss_pred CCcCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccc
Q psy5570 115 TPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAF 194 (875)
Q Consensus 115 ~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~ 194 (875)
....|++++... ...++++++.-.....++||..++.||.-++..|+|+|+.+.. +.+++.. +.
T Consensus 34 ~~dDdaa~~~~~---~~~lv~ttDgvh~~~~~~p~~~G~~av~~nvSDIaAmGa~P~~-~l~sl~l------------p~ 97 (346)
T cd02691 34 AQDDDAGVDAAD---VEYIVVAIDGIHSRLSDFPFLAGFHATRAALRDVMVMGARPVA-LLSDIHL------------AD 97 (346)
T ss_pred cccCceEEEccC---CCeEEEEeCCCCCCcccChHHHHHHHHHHHHHHHHHcCCchHH-hheeeec------------CC
Confidence 344577776642 4467888875544445799999999999999999999986543 5444443 11
Q ss_pred cCcc--hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 195 KNHG--IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 195 g~P~--l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
..+. +-+. .+||.++|+++|+|++||-
T Consensus 98 ~~~~~~l~~i-----~~Gi~~a~~~~gv~lvGGd 126 (346)
T cd02691 98 DGDVGKLFDF-----TAGVTAVSEATGVPLVAGS 126 (346)
T ss_pred CCCHHHHHHH-----HHHHHHHHHHcCCeEEeee
Confidence 1121 4344 8899999999999999753
No 145
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=98.04 E-value=1.4e-05 Score=90.33 Aligned_cols=88 Identities=17% Similarity=0.255 Sum_probs=62.7
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
.+||+++ +.|+ -+.+.++|++.|+++.++.... ...+....++|+|+|+||-..+.. .....+
T Consensus 177 ~~~I~vi-D~G~--k~nivr~L~~~G~~v~vvp~~~-~~~~i~~~~~DGIvLSgGPgdp~~-------------~~~~~~ 239 (360)
T PRK12564 177 KYKVVAI-DFGV--KRNILRELAERGCRVTVVPATT-TAEEILALNPDGVFLSNGPGDPAA-------------LDYAIE 239 (360)
T ss_pred CCEEEEE-eCCc--HHHHHHHHHHCCCEEEEEeCCC-CHHHHHhcCCCEEEEeCCCCChHH-------------HHHHHH
Confidence 4688887 8775 4789999999999998876431 111111126899999998632211 134567
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+++++++ ++|+||||.|+|+|..+
T Consensus 240 ~i~~~~~~-~~PilGIClG~QlLa~a 264 (360)
T PRK12564 240 MIRELLEK-KIPIFGICLGHQLLALA 264 (360)
T ss_pred HHHHHHHc-CCeEEEECHHHHHHHHH
Confidence 78888874 89999999999999873
No 146
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=98.03 E-value=2.6e-05 Score=86.40 Aligned_cols=101 Identities=21% Similarity=0.242 Sum_probs=72.2
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHHc----C---CeeEEEEeec--cc--------c--cccCccCccEEEEcCCcCcc
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQVC----G---FEVWDITVQD--LL--------E--NKITLDRFKGLVFPGGFSYA 728 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~a----G---~~v~~V~~~d--l~--------~--~~~~l~~~d~lvlPGGfS~g 728 (875)
++|+|+++||++ ..|+ ..+|..+ + |++.+++.+. +. . .-.+++++|.||+|||...
T Consensus 10 ~~v~ill~~gf~-~~~~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg~~~- 87 (322)
T PRK09393 10 HLVVALAYDGLC-TFEFGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGWRGP- 87 (322)
T ss_pred cEEEEEEcCCCC-hhHHHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCCCcc-
Confidence 379999999999 4444 4445332 2 5666665531 11 0 0113578999999997532
Q ss_pred ccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 729 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 729 D~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
+. ..++.+.+.|+++.++ +++|.|||.|..+|.++|+|.|...|.
T Consensus 88 ~~-----------~~~~~l~~~l~~~~~~-~~~i~aic~g~~~La~aGlL~~~~~Tt 132 (322)
T PRK09393 88 DA-----------PVPEPLLEALRAAHAR-GARLCSICSGVFVLAAAGLLDGRRATT 132 (322)
T ss_pred cc-----------cCCHHHHHHHHHHHHc-CCEEEEEcHHHHHHHhccCCCCCeeee
Confidence 11 1367899999999984 999999999999999999999998666
No 147
>PRK13566 anthranilate synthase; Provisional
Probab=98.02 E-value=1.6e-05 Score=97.01 Aligned_cols=90 Identities=19% Similarity=0.152 Sum_probs=65.1
Q ss_pred ccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEE-cCCcCccccccchhHHHHHHhhchh
Q psy5570 668 KKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVF-PGGFSYADALGSAKGWAASLLLNEG 746 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvl-PGGfS~gD~l~~s~~~a~ail~~~~ 746 (875)
.+.+||+|| +.|......+.+.|++.|+++..+.... .....+..++|+||| ||.++..| ..
T Consensus 524 ~~g~~IlvI-D~~dsf~~~l~~~Lr~~G~~v~vv~~~~-~~~~~~~~~~DgVVLsgGpgsp~d---------------~~ 586 (720)
T PRK13566 524 GEGKRVLLV-DHEDSFVHTLANYFRQTGAEVTTVRYGF-AEEMLDRVNPDLVVLSPGPGRPSD---------------FD 586 (720)
T ss_pred CCCCEEEEE-ECCCchHHHHHHHHHHCCCEEEEEECCC-ChhHhhhcCCCEEEECCCCCChhh---------------CC
Confidence 355788877 7676667889999999999998886541 111112357899988 55555332 12
Q ss_pred HHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 747 IKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 747 i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+.+.++..+++ ++|+||||.|+|+|.++
T Consensus 587 ~~~lI~~a~~~-~iPILGIClG~QlLa~a 614 (720)
T PRK13566 587 CKATIDAALAR-NLPIFGVCLGLQAIVEA 614 (720)
T ss_pred cHHHHHHHHHC-CCcEEEEehhHHHHHHH
Confidence 45677777774 99999999999999996
No 148
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.02 E-value=1.4e-05 Score=81.96 Aligned_cols=76 Identities=30% Similarity=0.436 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCC-ce
Q psy5570 683 GDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSD-TF 761 (875)
Q Consensus 683 ~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g-~~ 761 (875)
.-.|=.++|+++|.++..|- .+.+|++.|+||||||=|. -++.+++...+.+.+++|+.+ | +|
T Consensus 7 ~~~EH~~~l~~lg~~~~~Vr------~~~dL~~~dgLIiPGGEST---------ti~~ll~~~gL~~~l~~~~~~-g~~P 70 (188)
T PF01174_consen 7 AFREHIRMLERLGAEVVEVR------TPEDLEGLDGLIIPGGEST---------TIGKLLRRYGLFEPLREFIRS-GSKP 70 (188)
T ss_dssp SHHHHHHHHHHTTSEEEEE-------SGGGGTT-SEEEE-SS-HH---------HHHHHHHHTTHHHHHHHHHHT-T--E
T ss_pred ChHHHHHHHHHcCCCeEEeC------CHHHHccCCEEEECCCcHH---------HHHHHHHHcCCHHHHHHHHHc-CCCc
Confidence 34677889999999886653 3567999999999999983 246677888999999999985 7 99
Q ss_pred EEEEehhHHHHHh
Q psy5570 762 SFGVCNGCQLMNL 774 (875)
Q Consensus 762 vLGICnGfQiL~e 774 (875)
++|-|-|+-+|++
T Consensus 71 v~GTCAGlIlLa~ 83 (188)
T PF01174_consen 71 VWGTCAGLILLAK 83 (188)
T ss_dssp EEEETHHHHHHEE
T ss_pred eeehhHHHHHhhh
Confidence 9999999999988
No 149
>PLN02335 anthranilate synthase
Probab=98.01 E-value=1.5e-05 Score=84.45 Aligned_cols=91 Identities=15% Similarity=0.135 Sum_probs=62.2
Q ss_pred ccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 668 KKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
+..++|+|| +.+..--+-+...|++.|.++.++...++...+....++|+|||.||-......+. .
T Consensus 16 ~~~~~ilvi-D~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~~~~~~d~iVisgGPg~p~d~~~-------------~ 81 (222)
T PLN02335 16 KQNGPIIVI-DNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRKNPRGVLISPGPGTPQDSGI-------------S 81 (222)
T ss_pred CccCcEEEE-ECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHHHhcCCCEEEEcCCCCChhhccc-------------h
Confidence 355688887 87777778899999999999998865322211112235789999888764433322 1
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+.+++ +. .+.|+||||.|+|+|..
T Consensus 82 ~~~~~~-~~-~~~PiLGIClG~QlLa~ 106 (222)
T PLN02335 82 LQTVLE-LG-PLVPLFGVCMGLQCIGE 106 (222)
T ss_pred HHHHHH-hC-CCCCEEEecHHHHHHHH
Confidence 222333 23 37999999999999987
No 150
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.00 E-value=1.7e-05 Score=66.93 Aligned_cols=88 Identities=27% Similarity=0.364 Sum_probs=64.8
Q ss_pred EEEecCCCCCH--HHHHHHHHHcCCeeEEEEeeccccc-ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 674 AVLREEGINGD--REMSAMAQVCGFEVWDITVQDLLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 674 aIlv~pG~n~~--~e~~~A~~~aG~~v~~V~~~dl~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
+++..++.+.. .....++++.|+.+..++..+.... .....++|++++|||........ .+....+.
T Consensus 2 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~~----------~~~~~~~~ 71 (92)
T cd03128 2 AVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDLA----------WDEALLAL 71 (92)
T ss_pred EEEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhhc----------cCHHHHHH
Confidence 45556666532 4578899999999988876532211 23467899999999998654443 35678888
Q ss_pred HHHHHHCCCceEEEEehhHHHH
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLM 772 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL 772 (875)
+.++..+ +++++|+|.|.|++
T Consensus 72 ~~~~~~~-~~~i~~~~~g~~~~ 92 (92)
T cd03128 72 LREAAAA-GKPVLGICLGAQLL 92 (92)
T ss_pred HHHHHHc-CCEEEEEecccccC
Confidence 8888885 99999999999975
No 151
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=98.00 E-value=2.4e-05 Score=78.13 Aligned_cols=97 Identities=20% Similarity=0.261 Sum_probs=67.5
Q ss_pred EecCCCCCHHHH---HHHHHHcC-------CeeEEEEeec--cc----------ccccCccCccEEEEcCCcCccccccc
Q psy5570 676 LREEGINGDREM---SAMAQVCG-------FEVWDITVQD--LL----------ENKITLDRFKGLVFPGGFSYADALGS 733 (875)
Q Consensus 676 lv~pG~n~~~e~---~~A~~~aG-------~~v~~V~~~d--l~----------~~~~~l~~~d~lvlPGGfS~gD~l~~ 733 (875)
+++||++ ..|+ ...|+.++ |++.+|+.+. +. ..-.+..++|+|++|||...
T Consensus 1 Ll~~gf~-~~~~~~~~d~l~~a~~~~~~~~~~~~~vs~~~~~v~~s~g~~i~~~~~~~~~~~~D~lvvpg~~~~------ 73 (166)
T PF13278_consen 1 LLFPGFS-LLELAGPLDVLRAANRLSGEPLFEVRLVSPTGGPVTSSSGLRIQPDGSLDDAPDFDILVVPGGPGF------ 73 (166)
T ss_dssp EE-TTB--HHHHHHHHHHHTTCTHHCTTTTEEEEEEESSSCEEEBTTSEEEEESEETCCCSCCSEEEEE-STTH------
T ss_pred CCCCCCc-HHHHHHHHHHHHhchhhcCCCCeEEEEEecCCCeeeecCCeEEEeccChhhcccCCEEEeCCCCCc------
Confidence 4588888 6555 55666677 7777776531 01 00123678999999999981
Q ss_pred hhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 734 AKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 734 s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
.....++.+.+.++++.+ +++++++||.|-.+|.++|+|.|...|.
T Consensus 74 -----~~~~~~~~l~~~l~~~~~-~~~~i~aic~G~~~La~aGlL~g~~~tt 119 (166)
T PF13278_consen 74 -----DAAAKDPALLDWLRQQHA-QGTYIAAICTGALLLAEAGLLDGRRATT 119 (166)
T ss_dssp -----HHHTT-HHHHHHHHHHHC-CTSEEEEETTHHHHHHHTTTTTTSEE--
T ss_pred -----hhcccCHHHHHHhhhhhc-cceEEeeeehHHHHHhhhhccCcccccc
Confidence 223457789999999887 4999999999999999999999988665
No 152
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.00 E-value=1.8e-05 Score=80.71 Aligned_cols=86 Identities=31% Similarity=0.454 Sum_probs=71.4
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcC-CeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCG-FEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG-~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
|||+|+...|.- .|=..+++++| .++..|- .+.++++.|+||||||=|. -++.+++...+.+
T Consensus 1 m~IGVLalQG~v--~EH~~~l~~~~~~e~~~Vk------~~~dL~~~d~LIiPGGEST---------Ti~rL~~~~gl~e 63 (194)
T COG0311 1 MKIGVLALQGAV--EEHLEALEKAGGAEVVEVK------RPEDLEGVDGLIIPGGEST---------TIGRLLKRYGLLE 63 (194)
T ss_pred CeEEEEEecccH--HHHHHHHHhhcCCceEEEc------CHHHhccCcEEEecCccHH---------HHHHHHHHcCcHH
Confidence 689999988865 55678899995 7766642 3567999999999999983 2466888889999
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.++++.+. |+|++|=|-|+-+|.+
T Consensus 64 ~l~~~~~~-G~Pv~GTCAGlIlLak 87 (194)
T COG0311 64 PLREFIAD-GLPVFGTCAGLILLAK 87 (194)
T ss_pred HHHHHHHc-CCceEEechhhhhhhh
Confidence 99999995 9999999999999986
No 153
>CHL00101 trpG anthranilate synthase component 2
Probab=97.93 E-value=2.8e-05 Score=80.18 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=59.8
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|.|+ +.|..--+-+.+.|++.|+++.++...+....+....++|+||+.||-...... .....+.
T Consensus 2 ilii-d~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dgiiisgGpg~~~~~--------------~~~~~i~ 66 (190)
T CHL00101 2 ILII-DNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKNLNIRHIIISPGPGHPRDS--------------GISLDVI 66 (190)
T ss_pred EEEE-ECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhhCCCCEEEECCCCCChHHC--------------cchHHHH
Confidence 4444 666666677899999999999877643222212222568999998887532211 1223344
Q ss_pred HHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
+.+++ ++|+||||.|+|+|+. .++|.
T Consensus 67 ~~~~~-~~PiLGIClG~Qlla~--~~Gg~ 92 (190)
T CHL00101 67 SSYAP-YIPILGVCLGHQSIGY--LFGGK 92 (190)
T ss_pred HHhcC-CCcEEEEchhHHHHHH--HhCCE
Confidence 45564 8999999999999988 35554
No 154
>COG2139 RPL21A Ribosomal protein L21E [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=6e-06 Score=75.34 Aligned_cols=65 Identities=28% Similarity=0.348 Sum_probs=54.2
Q ss_pred cccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCCc
Q psy5570 239 KKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSR 303 (875)
Q Consensus 239 ~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~~ 303 (875)
+..++.+.+.+++|+|+||||+-|||+||+|++++..+..+.|+...+.+.+--..|||.+.+++
T Consensus 33 y~~Gd~V~I~IdpSv~kGmPh~rf~G~TG~Vvg~~g~ay~V~v~~G~k~K~liv~peHLk~~~~~ 97 (98)
T COG2139 33 YKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVYDGNKEKTLIVRPEHLKPQKCR 97 (98)
T ss_pred ccCCCEEEEEeCcccccCCCCccccCcceEEEeccCCEEEEEEecCCceEEEEeCHHHccccccC
Confidence 55688888899999999999999999999999999999999887555555555557788888764
No 155
>PRK05665 amidotransferase; Provisional
Probab=97.91 E-value=6.3e-05 Score=80.66 Aligned_cols=94 Identities=21% Similarity=0.361 Sum_probs=57.3
Q ss_pred ceEEEEEecCCCCCH---------HH-HHHHHHHcCCeeEEEEeeccccc--ccCccCccEEEEcCCcCccccccchhHH
Q psy5570 670 VISIAVLREEGINGD---------RE-MSAMAQVCGFEVWDITVQDLLEN--KITLDRFKGLVFPGGFSYADALGSAKGW 737 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~---------~e-~~~A~~~aG~~v~~V~~~dl~~~--~~~l~~~d~lvlPGGfS~gD~l~~s~~~ 737 (875)
.||++|+ ..|...+ .+ ....|..++.+..+... +...+ +.+++++|++|+.||-+.. .+. .-|
T Consensus 2 ~mki~IL-~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~-~~~~~~~p~~~~~~dgiiitGs~~~v--~~~-~pw 76 (240)
T PRK05665 2 SLRICIL-ETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVY-NVVQGDYPADDEKFDAYLVTGSKADS--FGT-DPW 76 (240)
T ss_pred ceEEEEE-ECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEE-eccCCCCCCCcccCCEEEECCCCCCc--ccc-chH
Confidence 3678877 4554422 22 23345556643322222 11221 3357789999999996522 221 236
Q ss_pred HHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 738 AASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 738 a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+. .+.+.|++.+++ ++|+||||.|.|+|..+
T Consensus 77 i~------~l~~~i~~~~~~-~~PilGIC~GhQlla~A 107 (240)
T PRK05665 77 IQ------TLKTYLLKLYER-GDKLLGVCFGHQLLALL 107 (240)
T ss_pred HH------HHHHHHHHHHhc-CCCEEEEeHHHHHHHHH
Confidence 54 346678888875 89999999999999873
No 156
>PRK05637 anthranilate synthase component II; Provisional
Probab=97.88 E-value=3.3e-05 Score=81.07 Aligned_cols=86 Identities=12% Similarity=0.108 Sum_probs=58.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCC-cCccccccchhHHHHHHhhchhHHHH
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGG-FSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGG-fS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
||++| +.+-..-+.+.++|++.|++++++... ...++....++|+|||.|| .+..|.- ...+.
T Consensus 3 ~il~i-D~~dsf~~nl~~~l~~~g~~~~v~~~~-~~~~~l~~~~~~~iIlsgGPg~~~d~~--------------~~~~l 66 (208)
T PRK05637 3 HVVLI-DNHDSFVYNLVDAFAVAGYKCTVFRNT-VPVEEILAANPDLICLSPGPGHPRDAG--------------NMMAL 66 (208)
T ss_pred EEEEE-ECCcCHHHHHHHHHHHCCCcEEEEeCC-CCHHHHHhcCCCEEEEeCCCCCHHHhh--------------HHHHH
Confidence 56665 888888899999999999999887653 1111212236799999555 4433321 12234
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
++.+. + ++|+||||.|+|+|..+
T Consensus 67 i~~~~-~-~~PiLGIClG~Qlla~a 89 (208)
T PRK05637 67 IDRTL-G-QIPLLGICLGFQALLEH 89 (208)
T ss_pred HHHHh-C-CCCEEEEcHHHHHHHHH
Confidence 44443 3 79999999999999995
No 157
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=97.88 E-value=2.9e-05 Score=87.50 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=60.6
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCc--cCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITL--DRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l--~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
.++|+++ +.|.. ..+.++|++.|+++.++.... +...+ .++|+|+|+||-. |.-+ ....
T Consensus 167 ~~~V~vi-D~G~k--~ni~~~L~~~G~~v~vvp~~~---~~~~i~~~~~DGIiLsgGPg--dp~~-----------~~~~ 227 (354)
T PRK12838 167 GKHVALI-DFGYK--KSILRSLSKRGCKVTVLPYDT---SLEEIKNLNPDGIVLSNGPG--DPKE-----------LQPY 227 (354)
T ss_pred CCEEEEE-CCCHH--HHHHHHHHHCCCeEEEEECCC---CHHHHhhcCCCEEEEcCCCC--ChHH-----------hHHH
Confidence 3578877 87754 788999999999998886531 11122 3689999999964 3211 1234
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+.++++++ . +|+||||.|+|+|..
T Consensus 228 ~~~i~~~~~-~-~PvlGIClG~QlLa~ 252 (354)
T PRK12838 228 LPEIKKLIS-S-YPILGICLGHQLIAL 252 (354)
T ss_pred HHHHHHHhc-C-CCEEEECHHHHHHHH
Confidence 567777776 3 999999999999987
No 158
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=97.88 E-value=3.8e-05 Score=87.33 Aligned_cols=88 Identities=17% Similarity=0.266 Sum_probs=61.4
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+++|+++ +.|.- +.+.+.|++.|+++.++... ....+....++|+|+|+||-.-+..+ ....+
T Consensus 192 ~~~I~vi-D~g~k--~ni~~~L~~~G~~v~vvp~~-~~~~~i~~~~~dgIilSgGPg~p~~~-------------~~~i~ 254 (382)
T CHL00197 192 QLKIIVI-DFGVK--YNILRRLKSFGCSITVVPAT-SPYQDILSYQPDGILLSNGPGDPSAI-------------HYGIK 254 (382)
T ss_pred CCEEEEE-ECCcH--HHHHHHHHHCCCeEEEEcCC-CCHHHHhccCCCEEEEcCCCCChhHH-------------HHHHH
Confidence 4688887 76654 77999999999999887542 11111122368999999985322111 23456
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.++++++. +.|+||||.|+|+|..+
T Consensus 255 ~i~~~~~~-~~PilGIClGhQlLa~a 279 (382)
T CHL00197 255 TVKKLLKY-NIPIFGICMGHQILSLA 279 (382)
T ss_pred HHHHHHhC-CCCEEEEcHHHHHHHHH
Confidence 67777764 89999999999999874
No 159
>PRK05670 anthranilate synthase component II; Provisional
Probab=97.88 E-value=3.3e-05 Score=79.44 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=56.3
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCc-CccccccchhHHHHHHhhchhHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGF-SYADALGSAKGWAASLLLNEGIKTQL 751 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGf-S~gD~l~~s~~~a~ail~~~~i~~~v 751 (875)
|.|| +.|..=-+.+...|++.|.++.++.............++|+|||.||- +..|. + ...+.+
T Consensus 2 ilii-d~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~~~dglIlsgGpg~~~d~-~-------------~~~~~l 66 (189)
T PRK05670 2 ILLI-DNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEALNPDAIVLSPGPGTPAEA-G-------------ISLELI 66 (189)
T ss_pred EEEE-ECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhCCCCEEEEcCCCCChHHc-c-------------hHHHHH
Confidence 4554 767666688899999999999888654211111112248999996664 43331 1 123345
Q ss_pred HHHHHCCCceEEEEehhHHHHHhc
Q psy5570 752 NKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 752 ~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++ . .++|+||||.|+|+|..+
T Consensus 67 ~~~-~-~~~PvLGIClG~Qlla~a 88 (189)
T PRK05670 67 REF-A-GKVPILGVCLGHQAIGEA 88 (189)
T ss_pred HHh-c-CCCCEEEECHHHHHHHHH
Confidence 554 4 379999999999999985
No 160
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=97.84 E-value=3.1e-05 Score=87.43 Aligned_cols=85 Identities=20% Similarity=0.317 Sum_probs=60.1
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCcc--CccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLD--RFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~--~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
+++|+|+ +.|+- +.+.++|++.|+++.++... . +...+. ..|+|||+||-. |--+ ....
T Consensus 173 ~~~i~vi-D~G~k--~ni~~~L~~~G~~v~vvp~~-~--~~~~i~~~~pDGIiLSgGPg--dp~~-----------~~~~ 233 (358)
T TIGR01368 173 KKRVVVI-DFGVK--QNILRRLVKRGCEVTVVPYD-T--DAEEIKKYNPDGIFLSNGPG--DPAA-----------VEPA 233 (358)
T ss_pred ccEEEEE-eCCcH--HHHHHHHHHCCCEEEEEcCC-C--CHHHHHhhCCCEEEECCCCC--CHHH-----------HHHH
Confidence 3578887 87765 78999999999999887543 1 112232 349999999953 2111 2345
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+.++++++ ++|+||||.|+|+|..+
T Consensus 234 i~~i~~~~~--~~PILGIClG~QlLa~a 259 (358)
T TIGR01368 234 IETIRKLLE--KIPIFGICLGHQLLALA 259 (358)
T ss_pred HHHHHHHHc--CCCEEEECHHHHHHHHH
Confidence 567777774 79999999999999873
No 161
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=97.82 E-value=3.8e-05 Score=82.96 Aligned_cols=85 Identities=15% Similarity=0.086 Sum_probs=53.6
Q ss_pred HHHHHHHcCCeeEEEEeecc--cccccCccCccEEEEcCCc-C-----ccccccchhHHHHHHhhchhHHHHHHHHHHCC
Q psy5570 687 MSAMAQVCGFEVWDITVQDL--LENKITLDRFKGLVFPGGF-S-----YADALGSAKGWAASLLLNEGIKTQLNKFIARS 758 (875)
Q Consensus 687 ~~~A~~~aG~~v~~V~~~dl--~~~~~~l~~~d~lvlPGGf-S-----~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~ 758 (875)
...|+.++|..+..+....- ..-+..++.+|+|||+||. + ||..... .|. .-.++....+.++..+++
T Consensus 31 y~~~i~~aGg~pv~lp~~~~~~~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~--~~~-~~~rD~~e~~li~~a~~~- 106 (254)
T PRK11366 31 YLNAIIHAGGLPIALPHALAEPSLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDE--PDA-DPGRDLLSMALINAALER- 106 (254)
T ss_pred HHHHHHHCCCEEEEecCCCCCHHHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCC--CCC-ChhHHHHHHHHHHHHHHC-
Confidence 45788999998877663210 0012234679999999985 3 3322221 121 112233445667777774
Q ss_pred CceEEEEehhHHHHHhc
Q psy5570 759 DTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 759 g~~vLGICnGfQiL~el 775 (875)
++|+||||.|+|+|..+
T Consensus 107 ~~PILGICrG~Qllnva 123 (254)
T PRK11366 107 RIPIFAICRGLQELVVA 123 (254)
T ss_pred CCCEEEECHhHHHHHHH
Confidence 99999999999999875
No 162
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=97.81 E-value=3.7e-05 Score=83.90 Aligned_cols=80 Identities=21% Similarity=0.320 Sum_probs=49.4
Q ss_pred HHHHHHHcCCeeEEEEeeccccc-ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCC--ceEE
Q psy5570 687 MSAMAQVCGFEVWDITVQDLLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSD--TFSF 763 (875)
Q Consensus 687 ~~~A~~~aG~~v~~V~~~dl~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g--~~vL 763 (875)
-.++++++|+.|..|....-.+. +..++.+|+|++|||...-|. ..|.... ..+.+...+..+ .| .|++
T Consensus 25 Yv~~l~~aG~~vvpi~~~~~~~~l~~~l~~~dG~l~~Gg~~~~~~----~~~~~~~---~~l~~~a~~~~~-~g~~~Pv~ 96 (273)
T cd01747 25 YVKFLESAGARVVPIWINESEEYYDKLFKSINGILFPGGAVDIDT----SGYARTA---KIIYNLALERND-AGDYFPVW 96 (273)
T ss_pred HHHHHHHCCCeEEEEEeCCcHHHHHHHHhhCCEEEECCCCCcCCc----cccchHH---HHHHHHHHHhhh-cCCCCcEE
Confidence 46789999999888876410000 122678999999999853331 1122211 123233333222 24 7999
Q ss_pred EEehhHHHHHh
Q psy5570 764 GVCNGCQLMNL 774 (875)
Q Consensus 764 GICnGfQiL~e 774 (875)
|||.|||+|..
T Consensus 97 GiClG~QlL~~ 107 (273)
T cd01747 97 GTCLGFELLTY 107 (273)
T ss_pred EEcHHHHHHHH
Confidence 99999999988
No 163
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=97.79 E-value=5.9e-05 Score=78.31 Aligned_cols=91 Identities=18% Similarity=0.136 Sum_probs=58.6
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|.|+ +..-.=-+.+..-|++.|.++.++...+....+....++|+|||.||-...+... ..++.++
T Consensus 2 il~i-dn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iIlsgGP~~p~~~~-------------~~~~~i~ 67 (195)
T PRK07649 2 ILMI-DNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIENMKPDFLMISPGPCSPNEAG-------------ISMEVIR 67 (195)
T ss_pred EEEE-eCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhhCCCCEEEECCCCCChHhCC-------------CchHHHH
Confidence 4443 5444445677888999999998877543221122234689999999965433221 1334445
Q ss_pred HHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
.+ + .++|+||||.|+|+|..+ +.|.
T Consensus 68 ~~-~-~~~PvLGIClG~Qlla~~--lGg~ 92 (195)
T PRK07649 68 YF-A-GKIPIFGVCLGHQSIAQV--FGGE 92 (195)
T ss_pred Hh-c-CCCCEEEEcHHHHHHHHH--cCCE
Confidence 54 3 379999999999999883 5454
No 164
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=97.78 E-value=4.3e-05 Score=87.58 Aligned_cols=164 Identities=20% Similarity=0.285 Sum_probs=89.9
Q ss_pred eEEEEEecCCCCCH--HHHHHHHHHcC----CeeEEEEee--cccccc-cCccC-ccEEEEcCCcCccccccchhHHHHH
Q psy5570 671 ISIAVLREEGINGD--REMSAMAQVCG----FEVWDITVQ--DLLENK-ITLDR-FKGLVFPGGFSYADALGSAKGWAAS 740 (875)
Q Consensus 671 ~kVaIlv~pG~n~~--~e~~~A~~~aG----~~v~~V~~~--dl~~~~-~~l~~-~d~lvlPGGfS~gD~l~~s~~~a~a 740 (875)
.+||++=-|=---| .++..||+.+| .++.+.|++ ++.... ..+.. +|+|++||||.. | ||-|.
T Consensus 289 v~IalVGKYv~l~DaY~Sv~EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~----R---G~eGk 361 (533)
T COG0504 289 VTIALVGKYVELPDAYKSVIEALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGY----R---GVEGK 361 (533)
T ss_pred eEEEEEECCcCchhHHHHHHHHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCc----C---chHHH
Confidence 57887743332222 45677888875 677788875 333322 12333 999999999973 3 44444
Q ss_pred HhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh------cCCCCCCcccc-----------ccC------CC--CeEEe
Q psy5570 741 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL------LGWFSVSTQAR-----------QPY------IK--SRVRC 795 (875)
Q Consensus 741 il~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e------lGlLpg~~~t~-----------~~n------~~--~~f~~ 795 (875)
|. +++-..+ ++.|.||||+|||+.+= +|+-.....+. ++. .+ .|.-.
T Consensus 362 I~-------Ai~yARE-n~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~~lGGTmRLG~ 433 (533)
T COG0504 362 IA-------AIRYARE-NNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVVDLGGTMRLGA 433 (533)
T ss_pred HH-------HHHHHHh-cCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCCcCCceeeccc
Confidence 42 3443344 58999999999999764 44432221111 111 11 23334
Q ss_pred ccEEeccC-----Cc--eEEEeecceeecCHHH-HHHHHhCCCceeeeccee-eeeeeccCCccc
Q psy5570 796 PPLKKEKS-----GV--NITRLSITLNFSTSDT-LSWLLDSNTNVTVSALSW-AFMVNVSSFPAH 851 (875)
Q Consensus 796 ~~v~v~~~-----~~--~~~r~pi~~~f~~~~~-l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~ 851 (875)
.++.+..+ -| ..+.----|||--... .++|+++| +..|+.|= --.|.+--.|.|
T Consensus 434 y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~G--l~~sg~s~d~~lvEivE~~~h 496 (533)
T COG0504 434 YPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAG--LVFSGTSPDGGLVEIVELPDH 496 (533)
T ss_pred eeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCC--eEEEEEcCCCCeEEEEEcCCC
Confidence 44444321 11 1111112236655555 99999999 55566554 234555555555
No 165
>PF02769 AIRS_C: AIR synthase related protein, C-terminal domain; InterPro: IPR010918 This entry includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; PDB: 2Z1F_A 2Z1E_A 2YXZ_D 2V9Y_A 2HS0_A 2HRU_A 2HS3_A 3D54_A 1VK3_A 2HS4_A ....
Probab=97.76 E-value=2.1e-05 Score=77.19 Aligned_cols=98 Identities=9% Similarity=0.072 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHH-hH----HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhh
Q psy5570 436 MGKGKVAFNSNS-LV----FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLF 509 (875)
Q Consensus 436 ~~~~~~~f~~~~-li----~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~ 509 (875)
....+..+.... ++ .+.|+||+|| ||+.++.||+ .++++|++ |+....+..
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~i~a~~DvSdGGL~~~l~em~-~~s~~g~~------i~~~~~p~~---------------- 94 (153)
T PF02769_consen 38 AELEPPLLYAVRALAALKGLIHAAHDVSDGGLAGALAEMA-EASGVGAE------IDLDKIPLS---------------- 94 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEEEEEESTTHHHHHHHHHH-HCTTEEEE------EEGGGSHHH----------------
T ss_pred HHhhHHHHHHHHHhhhhhcceEEEEecCCchHHHHHHHHH-HhCCcceE------Eccccchhh----------------
Confidence 444445555555 33 5899999999 9999999999 89999998 887633211
Q ss_pred hhhhhcchhhhhhccccceee---EecCCHHHHHHHHHhhcCCCCCCC-ceeecccccCc
Q psy5570 510 IYFIVQRTKLCIVQRHEVGLA---FDEWDLEYYTDIFRNKLKRNPTSV-ECFDLAQSNSE 565 (875)
Q Consensus 510 ~~~~~~~~~~~~LFsE~~G~v---v~~~d~~~v~~~f~~~l~r~p~~v-e~~~IGqvnse 565 (875)
.......+.||+|+.|.+ +.+++.+.+.+.++. .++ .+..||+|+.+
T Consensus 95 ---~~~~~~~~~l~~~~~g~~l~~v~~~~~~~~~~~~~~------~g~~~~~~IG~V~~~ 145 (153)
T PF02769_consen 95 ---DELQSPLEMLFSESEGRLLVAVPPEDAEEFLAALKK------AGIPNATVIGEVTEG 145 (153)
T ss_dssp ---HHHHHHHHHHHHSSSTEEEEEEEGGGHHHHHHHHHH------TTCTTEEEEEEEESS
T ss_pred ---hhhhhhhhhhccCCCCCEEEEEcHHHHHHHHHHHHh------CCCCCEEEEEEEEcC
Confidence 000134578999999965 566666778888887 778 59999999876
No 166
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=97.72 E-value=9.3e-05 Score=76.29 Aligned_cols=91 Identities=18% Similarity=0.083 Sum_probs=56.4
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|.|| +..-.=-+.+.+.|++.|+++.++...+....+..-.++|+|||.||-...+ +. ..-.+.++
T Consensus 2 il~i-d~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iilsgGpg~p~--~~-----------~~~~~~i~ 67 (188)
T TIGR00566 2 VLMI-DNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEALLPLLIVISPGPCTPN--EA-----------GISLEAIR 67 (188)
T ss_pred EEEE-ECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHhcCCCEEEEcCCCCChh--hc-----------chhHHHHH
Confidence 4444 4443335677888999999998776432211111112478888888763222 11 01155666
Q ss_pred HHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
++ + .++|+||||.|+|+|..+ +.|.
T Consensus 68 ~~-~-~~~PvLGIC~G~Qll~~~--~GG~ 92 (188)
T TIGR00566 68 HF-A-GKLPILGVCLGHQAMGQA--FGGD 92 (188)
T ss_pred Hh-c-cCCCEEEECHHHHHHHHH--cCCE
Confidence 66 5 489999999999999985 4454
No 167
>PRK07567 glutamine amidotransferase; Provisional
Probab=97.68 E-value=0.00017 Score=77.48 Aligned_cols=88 Identities=19% Similarity=0.331 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCeeEEEEeeccccc---ccCccCccEEEEcCCcCcc-ccccchhHHHHHHhhchhHHHHHHHHHHCCCc
Q psy5570 685 REMSAMAQVCGFEVWDITVQDLLEN---KITLDRFKGLVFPGGFSYA-DALGSAKGWAASLLLNEGIKTQLNKFIARSDT 760 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~dl~~~---~~~l~~~d~lvlPGGfS~g-D~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~ 760 (875)
.+....|++.|.....+....+... +.+++++|+||+.||-... |.-...--|+..+. ..+++.++..++ .++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~--~~i~~~i~~~~~-~~~ 94 (242)
T PRK07567 18 AEYAAFLRYTGLDPAELRRIRLDREPLPDLDLDDYSGVIVGGSPFNVSDPAESKSPWQRRVE--AELSGLLDEVVA-RDF 94 (242)
T ss_pred chHHHHHHhcCCCccceEEEecccCCCCCCCHhhccEEEEcCCCCcCCCCCCccchHHHHHH--HHHHHHHHHHHh-cCC
Confidence 4556777888865332222111111 2368899999999996321 11111235666552 335666666667 499
Q ss_pred eEEEEehhHHHHHhc
Q psy5570 761 FSFGVCNGCQLMNLL 775 (875)
Q Consensus 761 ~vLGICnGfQiL~el 775 (875)
|+||||.|+|+|..+
T Consensus 95 PvLGIC~G~Qlla~a 109 (242)
T PRK07567 95 PFLGACYGVGTLGHH 109 (242)
T ss_pred CEEEEchhHHHHHHH
Confidence 999999999999985
No 168
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=97.68 E-value=0.00011 Score=75.84 Aligned_cols=81 Identities=20% Similarity=0.140 Sum_probs=52.5
Q ss_pred HHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEE
Q psy5570 684 DREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSF 763 (875)
Q Consensus 684 ~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vL 763 (875)
-+-+...|++.|.++.++...+....+..-.++|+|||.||=.-....+ .....++. +++ ++|+|
T Consensus 12 ~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~iilsgGP~~~~~~~-------------~~~~~i~~-~~~-~~PiL 76 (191)
T PRK06774 12 TYNLYQYFCELGTEVMVKRNDELQLTDIEQLAPSHLVISPGPCTPNEAG-------------ISLAVIRH-FAD-KLPIL 76 (191)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCeEEEcCCCCChHhCC-------------CchHHHHH-hcC-CCCEE
Confidence 4667888999999998877542221121123578999999874332211 12334444 454 89999
Q ss_pred EEehhHHHHHhcCCCCCC
Q psy5570 764 GVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 764 GICnGfQiL~elGlLpg~ 781 (875)
|||.|+|+|..+ +.|.
T Consensus 77 GIC~G~Qlla~~--~GG~ 92 (191)
T PRK06774 77 GVCLGHQALGQA--FGAR 92 (191)
T ss_pred EECHHHHHHHHH--hCCE
Confidence 999999999986 4444
No 169
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=97.64 E-value=0.00015 Score=74.79 Aligned_cols=77 Identities=19% Similarity=0.121 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEE
Q psy5570 684 DREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSF 763 (875)
Q Consensus 684 ~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vL 763 (875)
-+.+...|++.|+++.++...++...+....++|+|||.||=.-..... ...+.++. ++ .++|+|
T Consensus 12 t~nl~~~l~~~g~~v~v~~~~~~~~~~~~~~~~d~iils~GPg~p~~~~-------------~~~~~~~~-~~-~~~PiL 76 (187)
T PRK08007 12 TWNLYQYFCELGADVLVKRNDALTLADIDALKPQKIVISPGPCTPDEAG-------------ISLDVIRH-YA-GRLPIL 76 (187)
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHHHHHhcCCCEEEEcCCCCChHHCC-------------ccHHHHHH-hc-CCCCEE
Confidence 4567888899999998876543322222223689999999875433221 12344454 44 389999
Q ss_pred EEehhHHHHHhc
Q psy5570 764 GVCNGCQLMNLL 775 (875)
Q Consensus 764 GICnGfQiL~el 775 (875)
|||.|+|+|..+
T Consensus 77 GIClG~Q~la~a 88 (187)
T PRK08007 77 GVCLGHQAMAQA 88 (187)
T ss_pred EECHHHHHHHHH
Confidence 999999999983
No 170
>PRK09065 glutamine amidotransferase; Provisional
Probab=97.57 E-value=0.00016 Score=77.40 Aligned_cols=74 Identities=19% Similarity=0.259 Sum_probs=50.2
Q ss_pred HHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhH
Q psy5570 690 MAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGC 769 (875)
Q Consensus 690 A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGf 769 (875)
.|...|.+...+...+-. ...+++++|+|||.||-.. ..+. .-|+. .+++.|++.+++ ++|+||||.|+
T Consensus 30 ~~~~~~~~~~~~~~~~~~-~~p~~~~~dgvvi~Gg~~~--~~d~-~~w~~------~~~~~i~~~~~~-~~PvlGIC~G~ 98 (237)
T PRK09065 30 ALGLAEQPVVVVRVFAGE-PLPAPDDFAGVIITGSWAM--VTDR-LDWSE------RTADWLRQAAAA-GMPLLGICYGH 98 (237)
T ss_pred HhccCCceEEEEeccCCC-CCCChhhcCEEEEeCCCcc--cCCC-chhHH------HHHHHHHHHHHC-CCCEEEEChhH
Confidence 455568777765443111 1125789999999998753 2221 23543 346778888874 89999999999
Q ss_pred HHHHh
Q psy5570 770 QLMNL 774 (875)
Q Consensus 770 QiL~e 774 (875)
|+|..
T Consensus 99 Qlla~ 103 (237)
T PRK09065 99 QLLAH 103 (237)
T ss_pred HHHHH
Confidence 99998
No 171
>COG0611 ThiL Thiamine monophosphate kinase [Coenzyme metabolism]
Probab=97.55 E-value=0.0014 Score=72.85 Aligned_cols=90 Identities=12% Similarity=-0.072 Sum_probs=62.6
Q ss_pred CcCceEEEEEecCCcEEEEEEecC----CCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccc
Q psy5570 116 PLADVAVVALVHNDLRGAATSIGE----QPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGR 191 (875)
Q Consensus 116 p~sDaaV~~~~~~~~~g~ams~G~----~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~ 191 (875)
.+.|++++.++. .. .+++|++- .-..-.++|+.-+..||+=++..|+|+|+.+ .-..+|+..
T Consensus 25 ~GDDaA~v~~~~-~~-~lvvttD~lv~~~hF~~~~~p~d~G~Ka~a~NlSDlAAMGa~P-~~~~lsl~l----------- 90 (317)
T COG0611 25 IGDDAALVDAPE-GQ-RLVVTTDMLVEGTHFPPDMTPEDLGWKALAVNLSDLAAMGARP-KAFLLSLGL----------- 90 (317)
T ss_pred CCCceEEEecCC-Cc-eEEEEecccccccccCCCCCHHHHHHHHHHHHHHHHHHcCCCc-hhheeeeeC-----------
Confidence 345999998762 22 46666653 2334455699999999999999999999854 436666542
Q ss_pred ccccCcc--hhcccccccccchHHhhhhcCCcccCC
Q psy5570 192 FAFKNHG--IYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 192 w~~g~P~--l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
|...+. +-.+ ++||.++|+.+++++|||
T Consensus 91 -P~~~d~~~~~~~-----~~Gi~e~~~~y~~~lIGG 120 (317)
T COG0611 91 -PPDLDEEWLEAL-----ADGIFEAAKKYGVKLIGG 120 (317)
T ss_pred -CCCCCHHHHHHH-----HHHHHHHHHHcCCeEecc
Confidence 211222 3344 899999999999999963
No 172
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=97.53 E-value=0.00023 Score=81.48 Aligned_cols=86 Identities=13% Similarity=0.194 Sum_probs=59.8
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
++|+++ + +++-+.+.+.|++.|+++.++.... ...+..-.++|+|||.||= ||.-. .+...+.
T Consensus 241 ~~Ivvi-D--~G~K~nIlr~L~~~G~~v~VvP~~~-~~~ei~~~~pDGIiLSnGP--GDP~~-----------~~~~ie~ 303 (415)
T PLN02771 241 YHVIAY-D--FGIKHNILRRLASYGCKITVVPSTW-PASEALKMKPDGVLFSNGP--GDPSA-----------VPYAVET 303 (415)
T ss_pred CEEEEE-C--CChHHHHHHHHHHcCCeEEEECCCC-CHHHHhhcCCCEEEEcCCC--CChhH-----------hhHHHHH
Confidence 577765 4 5557999999999999998875431 1111112368999999994 33321 1335567
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++++. +.|+||||.|.|+|..+
T Consensus 304 ik~l~~--~iPIlGICLGhQlLa~A 326 (415)
T PLN02771 304 VKELLG--KVPVFGICMGHQLLGQA 326 (415)
T ss_pred HHHHHh--CCCEEEEcHHHHHHHHh
Confidence 777764 69999999999999874
No 173
>PRK14105 selenophosphate synthetase; Provisional
Probab=97.47 E-value=0.00096 Score=75.08 Aligned_cols=89 Identities=10% Similarity=-0.076 Sum_probs=64.8
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccC
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKN 196 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~ 196 (875)
+.|++|++.+ ..-.++|++.-+. ...|||.-++.||+-++..|+|+|+.++.-+.+++.. |...
T Consensus 47 gDDaAvi~~~---~~~lv~t~D~f~~-~~~~p~~~G~~av~~nlSDiaAmGa~~p~~~~~~l~l------------P~~~ 110 (345)
T PRK14105 47 GDDAAVIIKN---GLAIVKTVDVFTP-IVDDPYIQGKIAACNSTSDVYAMGLSEIIGVLVILGI------------PPEL 110 (345)
T ss_pred CCceEEEeeC---CeEEEEEecCCCC-CcCCHHHHHHHHHHHHHHHHHHcCCccHHHHHhhhcC------------CCCC
Confidence 3699998753 3567888887544 3579999999999999999999998544445454433 2222
Q ss_pred cc--hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 197 HG--IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 197 P~--l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
+. +-+. .+|+.++|+++|++++||.
T Consensus 111 ~~~~l~~i-----~~Gi~~~~~~~gv~lvGGd 137 (345)
T PRK14105 111 PIEVAKEM-----LQGFQDFCRENDTTIIGGH 137 (345)
T ss_pred CHHHHHHH-----HHHHHHHHHHhCCEEEeee
Confidence 22 4444 8899999999999999753
No 174
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=97.32 E-value=0.00062 Score=83.79 Aligned_cols=95 Identities=14% Similarity=0.185 Sum_probs=57.1
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHc-C--CeeEEEEeecccccc-cCccCccEEEEcCCcCccccccchhHHHHHHhhc
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVC-G--FEVWDITVQDLLENK-ITLDRFKGLVFPGGFSYADALGSAKGWAASLLLN 744 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~a-G--~~v~~V~~~dl~~~~-~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~ 744 (875)
+++||++| +.|-.--+.+...|++. | .++.+|...+..... ..+..+|+|||.||-...+... .
T Consensus 4 ~~~~iL~I-D~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~-----------~ 71 (742)
T TIGR01823 4 QRLHVLFI-DSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQ-----------D 71 (742)
T ss_pred CCceEEEE-eCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchh-----------h
Confidence 56789987 77755567777888885 5 444555433222111 1356899999988865432211 1
Q ss_pred hhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 745 EGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 745 ~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
..+...+.+..+..++|+||||.|+|+|..+
T Consensus 72 ~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a 102 (742)
T TIGR01823 72 MGIISELWELANLDEVPVLGICLGFQSLCLA 102 (742)
T ss_pred hHHHHHHHHhcccCCCcEEEEchhhHHHHhh
Confidence 1222222221111259999999999999984
No 175
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=97.25 E-value=0.00079 Score=75.79 Aligned_cols=117 Identities=10% Similarity=-0.005 Sum_probs=79.5
Q ss_pred HHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHH
Q psy5570 74 LQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGAR 153 (875)
Q Consensus 74 ~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~ 153 (875)
.+.|.++|..+ ++|+.+...+++ || .++.|++|+++. ....+++|++..+. ...|||..++
T Consensus 23 ~~~L~~~l~~~----------~~~~~~~~~~~~----g~--~~gDDaAvi~~~--~~~~lv~ttD~~~p-~~~~p~~~G~ 83 (347)
T TIGR00476 23 PDVLQKLLKGL----------QENHFVDDNQLV----GA--VMGDDAVIYLRH--NGLSLVQTTDYITP-IVDDPYMMGR 83 (347)
T ss_pred HHHHHHHHHhC----------CcccccCCceee----cC--CCCCCeEEEEec--CCeEEEEEeccCCC-CccCHHHHHH
Confidence 34556666554 555566666664 43 123699999864 34578999998864 4679999999
Q ss_pred HHHHHHHhhccccCCcccccceeccccccccccCCccccccc-Ccc-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 154 MAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK-NHG-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 154 ~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g-~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
.||+.++.+|+|+|+.+.. +.++.-+. +.+ .++ +-+. .+|+.++|+++|++++||-
T Consensus 84 ~av~~~lsDiaamGa~P~~-~l~~~~~~-----------~~~~~~~~l~~i-----~~Gi~~~~~~~g~~lvGGd 141 (347)
T TIGR00476 84 IAAANALSDIYAMGGTPID-AMLILLGV-----------SNKLTIEVMREV-----IQGFKDACREAGTSLTGGH 141 (347)
T ss_pred HHHHHHHHhhhhcCchHHH-HHhhccCC-----------CCCCCHHHHHHH-----HHHHHHHHHHcCCCeEeee
Confidence 9999999999999986544 32222111 101 112 4344 8899999999999999753
No 176
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=97.23 E-value=0.0011 Score=68.48 Aligned_cols=86 Identities=14% Similarity=0.077 Sum_probs=52.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~ 752 (875)
|.+| +..-.=-+.+..-|++.|+++.++...+....+..-.+.|+||+-||-..... . ....+.++
T Consensus 2 il~i-d~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~iilsgGp~~~~~--~-----------~~~~~~i~ 67 (193)
T PRK08857 2 LLMI-DNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEALNPTHLVISPGPCTPNE--A-----------GISLQAIE 67 (193)
T ss_pred EEEE-ECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhhCCCCEEEEeCCCCChHH--C-----------cchHHHHH
Confidence 4444 43333356778888999999988865421111111124788888886532221 1 11234444
Q ss_pred HHHHCCCceEEEEehhHHHHHh
Q psy5570 753 KFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 753 ~f~~r~g~~vLGICnGfQiL~e 774 (875)
. ++ .+.|+||||.|+|+|..
T Consensus 68 ~-~~-~~~PiLGIClG~Qlia~ 87 (193)
T PRK08857 68 H-FA-GKLPILGVCLGHQAIAQ 87 (193)
T ss_pred H-hc-CCCCEEEEcHHHHHHHH
Confidence 4 45 48999999999999988
No 177
>KOG2387|consensus
Probab=97.21 E-value=0.0012 Score=74.80 Aligned_cols=89 Identities=19% Similarity=0.247 Sum_probs=56.3
Q ss_pred ceEEEEEecCCC--CCHHHHHHHHHHc----CCeeEEEEee--ccccc------------ccCccCccEEEEcCCcCccc
Q psy5570 670 VISIAVLREEGI--NGDREMSAMAQVC----GFEVWDITVQ--DLLEN------------KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 670 ~~kVaIlv~pG~--n~~~e~~~A~~~a----G~~v~~V~~~--dl~~~------------~~~l~~~d~lvlPGGfS~gD 729 (875)
..+||++=-|-- .+-.++.+||+.+ +-..++.|+. ||... -..+..+|+|++||||.-
T Consensus 298 ~V~IalVGKYt~l~DsY~Sv~KAL~Ha~~~~~~kl~i~wi~s~dLE~~t~~e~~~~~~~aW~~l~~adGilvPGGFG~-- 375 (585)
T KOG2387|consen 298 PVRIALVGKYTKLSDSYLSVVKALEHAALAINRKLEIVWIDSSDLEPETEQEDPRKYHAAWQKLKSADGILVPGGFGD-- 375 (585)
T ss_pred cEEEEEEeccccchHHHHHHHHHHHHHHHHhcccceEEEEehhcccccccccChhHHHHHHHHhccCCeEEeCCcccc--
Confidence 346777643322 2224668888875 5677788875 44322 124677999999999962
Q ss_pred cccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHH
Q psy5570 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMN 773 (875)
Q Consensus 730 ~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~ 773 (875)
|+ -+..+.+.+ |+...+.|.||||+|||+-+
T Consensus 376 --RG----------veG~i~Aak-~ARen~iP~LGiCLGmQ~Av 406 (585)
T KOG2387|consen 376 --RG----------VEGKILAAK-WARENKIPFLGICLGMQLAV 406 (585)
T ss_pred --cc----------hhHHHHHHH-HHHhcCCCeEeeehhhhHHH
Confidence 33 122333444 34335899999999999854
No 178
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=97.20 E-value=0.00077 Score=71.74 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=52.0
Q ss_pred HHHHHHHHcCCeeEEEEee-cccccccCccCccEEEEcCCcC-----ccccccchhHHHHHHhhchhHHHHHHHHHHCCC
Q psy5570 686 EMSAMAQVCGFEVWDITVQ-DLLENKITLDRFKGLVFPGGFS-----YADALGSAKGWAASLLLNEGIKTQLNKFIARSD 759 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~-dl~~~~~~l~~~d~lvlPGGfS-----~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g 759 (875)
....|...+|.-+.++..- |-..-..-++..|+|||+||.. ||.......+- ..-.|+.-=+..+++-+++ |
T Consensus 30 ~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg~nV~P~~YGee~~~~~~~-~~p~RD~~E~aLi~~ALe~-~ 107 (243)
T COG2071 30 DYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGGSNVDPSLYGEEPSEKDGP-YDPERDAFELALIRAALER-G 107 (243)
T ss_pred HHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCCCcCCHHHcCCCCCcccCC-CCccccHHHHHHHHHHHHc-C
Confidence 3356777788877776522 2111123467789999999921 33333220000 0011333334556778885 9
Q ss_pred ceEEEEehhHHHHHh
Q psy5570 760 TFSFGVCNGCQLMNL 774 (875)
Q Consensus 760 ~~vLGICnGfQiL~e 774 (875)
+||||||=|+|+|-=
T Consensus 108 iPILgICRG~QllNV 122 (243)
T COG2071 108 IPILGICRGLQLLNV 122 (243)
T ss_pred CCEEEEccchHHHHH
Confidence 999999999999854
No 179
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.09 E-value=0.00093 Score=77.53 Aligned_cols=90 Identities=19% Similarity=0.313 Sum_probs=69.9
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHc-CCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVC-GFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~a-G~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
+..+|+|++.|=..|-.|+. +|+.. +..|..|.. ..++.+.|++||||--+--..+. +++...+
T Consensus 250 ~~i~Iav~~lp~isNFtD~d-pL~~~~~v~v~~v~~------~~~l~~~dlvIlPGsk~t~~DL~--------~lr~~g~ 314 (486)
T COG1492 250 RAIRIAVIRLPRISNFTDFD-PLRAEPDVRVRFVKP------GSDLRDADLVILPGSKNTIADLK--------ILREGGM 314 (486)
T ss_pred CceEEEEecCCCccccccch-hhhcCCCeEEEEecc------CCCCCCCCEEEeCCCcccHHHHH--------HHHHcCH
Confidence 45689999998766555543 44544 777776543 45688899999999988655553 4777889
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+.|.++..+ |++++|||=|||||-+
T Consensus 315 d~~i~~~~~~-~~~viGICGG~QmLG~ 340 (486)
T COG1492 315 DEKILEYARK-GGDVIGICGGYQMLGR 340 (486)
T ss_pred HHHHHHHHhC-CCCEEEEcchHHhhhh
Confidence 9999999985 9999999999999987
No 180
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=97.09 E-value=0.002 Score=66.64 Aligned_cols=88 Identities=18% Similarity=0.173 Sum_probs=55.3
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeec-ccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQD-LLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~d-l~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
++|.+|=-+-|= -+-++.-|++.|+++.++. +| +.....+-.++|+|||.=|=..++..+ -..+
T Consensus 2 ~~IL~IDNyDSF-tyNLv~yl~~lg~~v~V~r-nd~~~~~~~~~~~pd~iviSPGPG~P~d~G-------------~~~~ 66 (191)
T COG0512 2 MMILLIDNYDSF-TYNLVQYLRELGAEVTVVR-NDDISLELIEALKPDAIVISPGPGTPKDAG-------------ISLE 66 (191)
T ss_pred ceEEEEECccch-HHHHHHHHHHcCCceEEEE-CCccCHHHHhhcCCCEEEEcCCCCChHHcc-------------hHHH
Confidence 356666222222 3567888999998776543 33 222222334578888865554454222 2466
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.|++| . ...|+||||+|.|.|.++
T Consensus 67 ~i~~~-~-~~~PiLGVCLGHQai~~~ 90 (191)
T COG0512 67 LIRRF-A-GRIPILGVCLGHQAIAEA 90 (191)
T ss_pred HHHHh-c-CCCCEEEECccHHHHHHH
Confidence 77888 4 369999999999999993
No 181
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=96.78 E-value=0.0049 Score=70.68 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=81.1
Q ss_pred eEEEEEecCCCCCH-HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 671 ISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 671 ~kVaIlv~pG~n~~-~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
.||||..+.-+|=- .|....|+++|++++.++.- .++.-.+++|+|.|||||- .-|+..+..|..+++
T Consensus 246 ~rIAVA~D~AF~FyY~~nl~~Lr~~GAelv~FSPL---~D~~lP~~~D~vYlgGGYP--------ElfA~~L~~n~~~~~ 314 (451)
T COG1797 246 VRIAVARDAAFNFYYPENLELLREAGAELVFFSPL---ADEELPPDVDAVYLGGGYP--------ELFAEELSANESMRR 314 (451)
T ss_pred ceEEEEecchhccccHHHHHHHHHCCCEEEEeCCc---CCCCCCCCCCEEEeCCCCh--------HHHHHHHhhCHHHHH
Confidence 68999998888855 36788999999998886532 2222234799999999984 346788888999999
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHh------------cCCCCCCc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNL------------LGWFSVST 782 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~e------------lGlLpg~~ 782 (875)
.|++|.+. |+|++|=|=|+--|.+ .|++|+..
T Consensus 315 ~i~~~~~~-G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~ 358 (451)
T COG1797 315 AIKAFAAA-GKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGST 358 (451)
T ss_pred HHHHHHHc-CCceEEecccceeehhheeccCCceeeeeeeeccch
Confidence 99999995 9999999999999988 68888874
No 182
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=96.76 E-value=0.0042 Score=69.42 Aligned_cols=85 Identities=18% Similarity=0.276 Sum_probs=63.0
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCc--cCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITL--DRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l--~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
..+|+++ +.|.- +...+.|.+-|+++.+|... .+..++ .+.|+|+|.-|=. |--.. +..
T Consensus 179 ~~~Vv~i-D~GvK--~nIlr~L~~rg~~vtVVP~~---t~~eeIl~~~pDGiflSNGPG--DP~~~-----------~~~ 239 (368)
T COG0505 179 GKHVVVI-DFGVK--RNILRELVKRGCRVTVVPAD---TSAEEILALNPDGIFLSNGPG--DPAPL-----------DYA 239 (368)
T ss_pred CcEEEEE-EcCcc--HHHHHHHHHCCCeEEEEcCC---CCHHHHHhhCCCEEEEeCCCC--ChhHH-----------HHH
Confidence 3456665 87774 77888999999999988653 112222 4789999998864 44322 467
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+.+++++++ .+|++|||+|-|||.-
T Consensus 240 i~~ik~l~~~-~iPifGICLGHQllal 265 (368)
T COG0505 240 IETIKELLGT-KIPIFGICLGHQLLAL 265 (368)
T ss_pred HHHHHHHhcc-CCCeEEEcHHHHHHHH
Confidence 8889999985 6799999999999865
No 183
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.60 E-value=0.0052 Score=73.13 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=55.0
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeeccccc--ccCcc--CccEEEEcCCcCccccccchhHHHHHHhhchh
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLEN--KITLD--RFKGLVFPGGFSYADALGSAKGWAASLLLNEG 746 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~--~~~l~--~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~ 746 (875)
++|.|| +.+..=-+-+++.|++.|+++.++.. |.... ...+. ++++|||.||=......+.
T Consensus 2 ~~iLiI-Dn~dsft~nl~~~lr~~g~~v~V~~~-~~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~~~------------- 66 (531)
T PRK09522 2 ADILLL-DNIDSFTYNLADQLRSNGHNVVIYRN-HIPAQTLIERLATMSNPVLMLSPGPGVPSEAGC------------- 66 (531)
T ss_pred CeEEEE-eCCChHHHHHHHHHHHCCCCEEEEEC-CCCCccCHHHHHhcCcCEEEEcCCCCChhhCCC-------------
Confidence 367776 55555457788899999998877652 21110 11232 4679999998654322211
Q ss_pred HHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 747 IKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 747 i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
..+.++. +. .++|+||||.|+|+|..+
T Consensus 67 ~~~i~~~-~~-~~iPILGIClG~QlLa~a 93 (531)
T PRK09522 67 MPELLTR-LR-GKLPIIGICLGHQAIVEA 93 (531)
T ss_pred CHHHHHH-Hh-cCCCEEEEcHHHHHHHHh
Confidence 1222333 34 379999999999999983
No 184
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=96.51 E-value=0.0068 Score=75.76 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=58.5
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHc-CCeeEEEEeeccccccc-----CccCccEEEEcCCcCccccccchhHHHHHHh
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVC-GFEVWDITVQDLLENKI-----TLDRFKGLVFPGGFSYADALGSAKGWAASLL 742 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~a-G~~v~~V~~~dl~~~~~-----~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail 742 (875)
..|++.+|=.|.+= -+-++..|++. |.++.+|...++...+. .+..+|+|||.||=..++.... ++
T Consensus 80 ~~~~iLlIDnyDSf-TyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~~~d----~G--- 151 (918)
T PLN02889 80 EFVRTLLIDNYDSY-TYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTCPAD----IG--- 151 (918)
T ss_pred ccceEEEEeCCCch-HHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccchHH----HH---
Confidence 45789888333333 46678888887 99887765433222111 1357899999999754443221 11
Q ss_pred hchhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 743 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 743 ~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
-..+.|.++ .+.||||||+|+|+|+..
T Consensus 152 ---i~~~~i~~~---~~iPILGICLGhQ~i~~~ 178 (918)
T PLN02889 152 ---ICLRLLLEC---RDIPILGVCLGHQALGYV 178 (918)
T ss_pred ---HHHHHHHHh---CCCcEEEEcHHHHHHHHh
Confidence 123344443 269999999999999983
No 185
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=96.47 E-value=0.0047 Score=73.60 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=48.8
Q ss_pred HHHHHHHHHcCCe-eEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEE
Q psy5570 685 REMSAMAQVCGFE-VWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSF 763 (875)
Q Consensus 685 ~e~~~A~~~aG~~-v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vL 763 (875)
+.+.+.|++.|.+ +.++...+....+....++|+|||.||-...+..+. ..+.++.+ . .++|+|
T Consensus 13 ~nl~~~l~~~g~~~v~~~~~~~~~~~~~~~~~~d~vIlsgGP~~p~~~~~-------------~~~li~~~-~-~~~PvL 77 (534)
T PRK14607 13 YNIYQYIGELGPEEIEVVRNDEITIEEIEALNPSHIVISPGPGRPEEAGI-------------SVEVIRHF-S-GKVPIL 77 (534)
T ss_pred HHHHHHHHHcCCCeEEEECCCCCCHHHHHhcCCCEEEECCCCCChhhCCc-------------cHHHHHHh-h-cCCCEE
Confidence 5668889999986 555433322111222235799999999864432211 23445554 4 389999
Q ss_pred EEehhHHHHHhc
Q psy5570 764 GVCNGCQLMNLL 775 (875)
Q Consensus 764 GICnGfQiL~el 775 (875)
|||.|+|+|..+
T Consensus 78 GIClG~QlLa~a 89 (534)
T PRK14607 78 GVCLGHQAIGYA 89 (534)
T ss_pred EEcHHHHHHHHH
Confidence 999999999884
No 186
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=96.34 E-value=0.013 Score=62.85 Aligned_cols=97 Identities=12% Similarity=0.166 Sum_probs=70.0
Q ss_pred cceEEEEEecCCCCCH-----HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhh
Q psy5570 669 KVISIAVLREEGINGD-----REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLL 743 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~-----~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~ 743 (875)
..+||++|-.-+...+ .....+|++.|+++..+...+ +....|.++|+|+++||=++ ....+++
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~--d~~~~l~~ad~I~v~GGnt~---------~l~~~l~ 98 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVA--DPVAAIENAEAIFVGGGNTF---------QLLKQLY 98 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccch--hhHHHHhcCCEEEECCccHH---------HHHHHHH
Confidence 4568887755543322 235789999999988765431 11234889999999998663 2355667
Q ss_pred chhHHHHHHHHHHCCCceEEEEehhHHHHHhcCC
Q psy5570 744 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGW 777 (875)
Q Consensus 744 ~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGl 777 (875)
...+.+.|++++++ |++++|.|-|.-++.+...
T Consensus 99 ~~gl~~~l~~~~~~-G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 99 ERGLLAPIREAVKN-GTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HCCcHHHHHHHHHC-CCEEEEECHHHHhhhccce
Confidence 78899999999985 9999999999988777443
No 187
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.24 E-value=0.0077 Score=68.44 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=63.4
Q ss_pred eEEEEEecCCCC--CHHHHHHHHHHc---CCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhch
Q psy5570 671 ISIAVLREEGIN--GDREMSAMAQVC---GFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNE 745 (875)
Q Consensus 671 ~kVaIlv~pG~n--~~~e~~~A~~~a---G~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~ 745 (875)
|+|.|...+|+. |...+...|++. .+.|..|..++|...+ -..+++.||+|||-.. .+.+ . | +.
T Consensus 1 mnVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~~l~~~p-w~~~~~LlV~PGG~d~-~y~~-------~-l-~~ 69 (367)
T PF09825_consen 1 MNVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTADELLNEP-WQSKCALLVMPGGADL-PYCR-------S-L-NG 69 (367)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHHHhhcCc-cccCCcEEEECCCcch-HHHH-------h-h-Ch
Confidence 689999899965 224556677762 4777777655665544 3468999999998753 2221 1 1 44
Q ss_pred hHHHHHHHHHHCCCceEEEEehhHHHHH
Q psy5570 746 GIKTQLNKFIARSDTFSFGVCNGCQLMN 773 (875)
Q Consensus 746 ~i~~~v~~f~~r~g~~vLGICnGfQiL~ 773 (875)
.-.+.|++|+++ |+--||||.|--.=.
T Consensus 70 ~g~~~Ir~fV~~-GG~YlGiCAGaY~as 96 (367)
T PF09825_consen 70 EGNRRIRQFVEN-GGGYLGICAGAYYAS 96 (367)
T ss_pred HHHHHHHHHHHc-CCcEEEECcchhhhc
Confidence 567889999995 999999998866544
No 188
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=95.93 E-value=0.011 Score=62.17 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=53.3
Q ss_pred HHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhc-hhHHHHHHHHHHCCCceEEEEe
Q psy5570 688 SAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLN-EGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 688 ~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~-~~i~~~v~~f~~r~g~~vLGIC 766 (875)
.+..+.-|+.|.++-.+ ..+...-+++|++++-||--|...+-. ++ ....+.+++.+++ |+|+|+||
T Consensus 27 r~ra~~rgi~v~i~~vs--l~d~~~~~~~Dl~~~GGgqD~eQ~i~t---------~d~~~k~~~l~~~i~~-g~p~laiC 94 (250)
T COG3442 27 RQRAEKRGIKVEIVEVS--LTDTFPDDSYDLYFLGGGQDYEQEIAT---------RDLLTKKEGLKDAIEN-GKPVLAIC 94 (250)
T ss_pred hHHHHhcCCceEEEEee--cCCCCCcccccEEEecCchHHHHHHHh---------hhhccccHHHHHHHhc-CCcEEEEc
Confidence 45667778888776554 222333468999999888765444321 23 3466788999985 99999999
Q ss_pred hhHHHHHh
Q psy5570 767 NGCQLMNL 774 (875)
Q Consensus 767 nGfQiL~e 774 (875)
-|+|+|-.
T Consensus 95 gg~QlLG~ 102 (250)
T COG3442 95 GGYQLLGQ 102 (250)
T ss_pred cchhhccc
Confidence 99999976
No 189
>KOG0370|consensus
Probab=95.19 E-value=0.063 Score=65.98 Aligned_cols=86 Identities=20% Similarity=0.316 Sum_probs=63.1
Q ss_pred ccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 668 KKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
++..+|+++ +-|. -+...+.|..-|+++.+|..+- +..-.+||+|+|.+|=.-+.. -+.+
T Consensus 170 Gk~~~I~ai-DcG~--K~N~IRcL~~RGa~vtVvPw~~----~i~~~~yDGlflSNGPGdPe~-------------~~~~ 229 (1435)
T KOG0370|consen 170 GKSLRILAI-DCGL--KYNQIRCLVKRGAEVTVVPWDY----PIAKEEYDGLFLSNGPGDPEL-------------CPLL 229 (1435)
T ss_pred CcccEEEEc-ccCc--hHHHHHHHHHhCceEEEecCCc----cccccccceEEEeCCCCCchh-------------hHHH
Confidence 345677766 5444 3556778888999999986541 111238999999998753322 2567
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+.+++.+++ ++|++|||.|-|+|..
T Consensus 230 v~~vr~lL~~-~~PvfGIClGHQllA~ 255 (1435)
T KOG0370|consen 230 VQNVRELLES-NVPVFGICLGHQLLAL 255 (1435)
T ss_pred HHHHHHHHhC-CCCeEEEehhhHHHHH
Confidence 8889999986 7999999999999987
No 190
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=94.87 E-value=0.083 Score=55.28 Aligned_cols=97 Identities=19% Similarity=0.160 Sum_probs=67.9
Q ss_pred cceEEEEEecCCCC---CHHHHHHHHHHcCCeeEEEEeeccccc---ccCccCccEEEEcCCcCccccccchhHHHHHHh
Q psy5570 669 KVISIAVLREEGIN---GDREMSAMAQVCGFEVWDITVQDLLEN---KITLDRFKGLVFPGGFSYADALGSAKGWAASLL 742 (875)
Q Consensus 669 ~~~kVaIlv~pG~n---~~~e~~~A~~~aG~~v~~V~~~dl~~~---~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail 742 (875)
+.+||+++-..... .-.....+|++.|+++..+...+-..+ ...|.++|+|+++||-. .+- ...+
T Consensus 28 ~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~----~~~-----~~~l 98 (210)
T cd03129 28 AGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ----LRL-----LSVL 98 (210)
T ss_pred CCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH----HHH-----HHHH
Confidence 45688887444432 123457799999999887764321111 23588999999999654 222 3335
Q ss_pred hchhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 743 LNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 743 ~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+..++.+.+.+.+. +|++++|+|-|..++.+.
T Consensus 99 ~~t~~~~~i~~~~~-~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 99 RETPLLDAILKRVA-RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HhCChHHHHHHHHH-cCCeEEEcCHHHHHhhhc
Confidence 56678888888887 499999999999999995
No 191
>PLN02557 phosphoribosylformylglycinamidine cyclo-ligase
Probab=94.49 E-value=0.58 Score=53.79 Aligned_cols=89 Identities=9% Similarity=-0.169 Sum_probs=59.9
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccc----cCHHH-HHHHHHHHHHhhccccCCcccccceeccccccccccCCccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGL----VDPKR-GARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGR 191 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~----~dPy~-GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~ 191 (875)
+.|++++++. ...++++++.-..+.. .+||. -+..||+=++..|+++|+.++.-+ .++ . +++
T Consensus 86 GdDaavi~~~---~~~LV~ttD~vgtk~~~a~~~~~~~~iG~~aVa~nvnDIaamGA~P~~~l-~~l--~-------~~~ 152 (379)
T PLN02557 86 GGFGGLFPFG---DSYLVAGTDGVGTKLKLAFETGIHDTIGIDLVAMSVNDIVTSGAKPLFFL-DYF--A-------TSH 152 (379)
T ss_pred CCCeEEEecC---CCEEEEEeCCCCCCchhhhhcCcHhhHHHHHHHhHHHHHHHcCCChHHhh-eec--c-------cCC
Confidence 4599998754 2347777775543322 56775 699999999999999998765522 221 1 111
Q ss_pred ccccCcc-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 192 FAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 192 w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
+ .++ +-+. .+||.++|+++|++++||-
T Consensus 153 l---~~~~l~~i-----~~Gi~~a~~~~Gv~lVGGd 180 (379)
T PLN02557 153 L---DVDLAEKV-----IKGIVDGCQQSDCALLGGE 180 (379)
T ss_pred C---CHHHHHHH-----HHHHHHHHHHhCCEEEeec
Confidence 1 112 4444 8899999999999999753
No 192
>KOG1224|consensus
Probab=94.24 E-value=0.14 Score=59.77 Aligned_cols=96 Identities=17% Similarity=0.201 Sum_probs=51.9
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHc-CCeeEEEEeecccccc--cCcc---CccEEEE-cCCcCccccccchhHHHHHHhh
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVC-GFEVWDITVQDLLENK--ITLD---RFKGLVF-PGGFSYADALGSAKGWAASLLL 743 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~a-G~~v~~V~~~dl~~~~--~~l~---~~d~lvl-PGGfS~gD~l~~s~~~a~ail~ 743 (875)
.++..|--|-+= -+.++.++..+ |..++++.+.|-...+ ..+. .||+||+ ||=++ + +.+ .
T Consensus 15 l~~LlID~YDSy-TfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~-P--~~a---------~ 81 (767)
T KOG1224|consen 15 LRTLLIDNYDSY-TFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGS-P--MCA---------A 81 (767)
T ss_pred eeEEEEecccch-hhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCC-C--CcH---------H
Confidence 456555333322 34567777775 6555555443222111 1233 4898777 55444 2 322 1
Q ss_pred chhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccc
Q psy5570 744 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQA 784 (875)
Q Consensus 744 ~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t 784 (875)
+..+.. +-|.+.++.||||||+|||.| |+..|+...
T Consensus 82 d~gI~~--rl~~~~~~iPilGICLGfQal---~l~hGA~v~ 117 (767)
T KOG1224|consen 82 DIGICL--RLLLECRDIPILGICLGFQAL---GLVHGAHVV 117 (767)
T ss_pred HHHHHH--HHHHhcCCCceeeeehhhHhH---hhhccccee
Confidence 222222 224444589999999999974 677777644
No 193
>KOG3210|consensus
Probab=94.20 E-value=0.11 Score=52.70 Aligned_cols=90 Identities=22% Similarity=0.390 Sum_probs=61.1
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHc------CCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhh
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVC------GFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLL 743 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~a------G~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~ 743 (875)
..-|+|+...|.--+ -.+-+++. |....+.. ...+.+++++|+||||||-|.. ++.++.
T Consensus 11 n~VIGVLALQGAFiE--H~N~~~~c~~en~y~Ik~~~~t----VKT~~D~aq~DaLIIPGGEST~---------mslia~ 75 (226)
T KOG3210|consen 11 NVVIGVLALQGAFIE--HVNHVEKCIVENRYEIKLSVMT----VKTKNDLAQCDALIIPGGESTA---------MSLIAE 75 (226)
T ss_pred ceEEeeeehhhHHHH--HHHHHHHhhccCcceEEEEEEe----ecCHHHHhhCCEEEecCCchhH---------HHHHHh
Confidence 334788887776522 23333332 22222222 1235678999999999998842 234556
Q ss_pred chhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 744 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 744 ~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
...+.+.+.+|..++.+++-|-|-|+-.|.+
T Consensus 76 ~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ 106 (226)
T KOG3210|consen 76 RTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQ 106 (226)
T ss_pred hhhhHHHHHHHhcCCCccceeechhhhhhhh
Confidence 6679999999999756999999999998876
No 194
>KOG1559|consensus
Probab=94.16 E-value=0.057 Score=57.55 Aligned_cols=97 Identities=21% Similarity=0.300 Sum_probs=57.9
Q ss_pred cceEEEEEecCCCCCHH-------------HHHHHHHHcCCeeEEEEeeccccc-ccCccCccEEEEcCCcCc-cccccc
Q psy5570 669 KVISIAVLREEGINGDR-------------EMSAMAQVCGFEVWDITVQDLLEN-KITLDRFKGLVFPGGFSY-ADALGS 733 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~-------------e~~~A~~~aG~~v~~V~~~dl~~~-~~~l~~~d~lvlPGGfS~-gD~l~~ 733 (875)
.+|-|+|+.-||-|-.. +-.+-.+..|+.|..+-.++-.+. ...++-..++++|||..- |||..-
T Consensus 51 ykPvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~nepEe~lfqklelvNGviftGGwak~~dY~~v 130 (340)
T KOG1559|consen 51 YKPVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYNEPEEILFQKLELVNGVIFTGGWAKRGDYFEV 130 (340)
T ss_pred cCceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecCCcHHHHHHHHHHhceeEecCcccccccHHHH
Confidence 46788999888887321 112334557999988765421111 234677899999999543 444433
Q ss_pred hhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 734 AKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 734 s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+++-. ..++++-+-..-||-|||+||.+|.-
T Consensus 131 vkkifn---------k~le~nDaGehFPvyg~CLGFE~lsm 162 (340)
T KOG1559|consen 131 VKKIFN---------KVLERNDAGEHFPVYGICLGFELLSM 162 (340)
T ss_pred HHHHHH---------HHHhccCCccccchhhhhhhHHHHHH
Confidence 222111 12233333234599999999998854
No 195
>KOG1622|consensus
Probab=93.50 E-value=0.077 Score=60.90 Aligned_cols=82 Identities=20% Similarity=0.296 Sum_probs=55.4
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCc--cCccEEEEcCCcCc---cccccchhHHHHHHhhchh
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITL--DRFKGLVFPGGFSY---ADALGSAKGWAASLLLNEG 746 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l--~~~d~lvlPGGfS~---gD~l~~s~~~a~ail~~~~ 746 (875)
+|+|+ +.|+.--.=..+.+++.-...+++..+ .....| ..+.+|||.||=.. .|++ .
T Consensus 18 ~i~iL-D~GaQY~~~I~RrvRel~v~se~~p~~---t~~~~i~~~~~rgiIiSGGP~SVya~dAP--------------~ 79 (552)
T KOG1622|consen 18 TILIL-DFGAQYGKVIDRRVRELNVQSEILPLT---TPAKTITEYGPRGIIISGGPNSVYAEDAP--------------S 79 (552)
T ss_pred eEEEE-eccchhhHHHHHHHHHHhhhhhhccCC---ChhhhhhcCCceEEEEeCCCCccccCcCC--------------C
Confidence 57777 889886666677888877776665432 112233 46889999999542 2322 1
Q ss_pred HHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 747 IKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 747 i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+. -++++ -|.|+||||-|||++.++
T Consensus 80 ~d---p~if~-~~vpvLGICYGmQ~i~~~ 104 (552)
T KOG1622|consen 80 FD---PAIFE-LGVPVLGICYGMQLINKL 104 (552)
T ss_pred CC---hhHhc-cCCcceeehhHHHHHHHH
Confidence 22 23455 489999999999999874
No 196
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.46 E-value=0.13 Score=51.84 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=45.3
Q ss_pred cCccCccEEEEcCCcCccccccchhHHHH---HHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 711 ITLDRFKGLVFPGGFSYADALGSAKGWAA---SLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 711 ~~l~~~d~lvlPGGfS~gD~l~~s~~~a~---ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+.+++|+|++||||.....+.- |+- .---++.+....+.|.+ .|||+-=||..+-||-+
T Consensus 81 a~~e~~DALivPGGFGAAKNLsd---FA~kGaeC~v~pDv~al~~a~~~-agKP~G~iCIaP~m~pk 143 (217)
T COG3155 81 ADAEELDALIVPGGFGAAKNLSD---FASKGAECSVDPDLKALAQAMHQ-AGKPLGFMCIAPAMLPK 143 (217)
T ss_pred cCHHhcceeeccCccchhhhhHH---HhccCccceeCHHHHHHHHHHHH-hCCCceEEEecHHHHHH
Confidence 35678999999999986555432 211 11126788888899998 59999999999999877
No 197
>KOG3179|consensus
Probab=93.40 E-value=0.12 Score=54.05 Aligned_cols=77 Identities=21% Similarity=0.319 Sum_probs=51.0
Q ss_pred HHHHHcCCeeEEEEeec-ccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEeh
Q psy5570 689 AMAQVCGFEVWDITVQD-LLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCN 767 (875)
Q Consensus 689 ~A~~~aG~~v~~V~~~d-l~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICn 767 (875)
..|...|-+-.....-| --..+.+|+.|+++||.|.-. |+.. ..-||..+ .+.+++.... .++|||||.
T Consensus 32 sllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~--dAf~-d~dWI~KL------cs~~kkld~m-kkkvlGICF 101 (245)
T KOG3179|consen 32 SLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKH--DAFS-DADWIKKL------CSFVKKLDFM-KKKVLGICF 101 (245)
T ss_pred HHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcc--cccc-cchHHHHH------HHHHHHHHhh-ccceEEEec
Confidence 34555564444332211 112255789999999999653 5554 35677554 5677887774 699999999
Q ss_pred hHHHHHhc
Q psy5570 768 GCQLMNLL 775 (875)
Q Consensus 768 GfQiL~el 775 (875)
|-||++.+
T Consensus 102 GHQiiara 109 (245)
T KOG3179|consen 102 GHQIIARA 109 (245)
T ss_pred cHHHHHHh
Confidence 99999885
No 198
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=93.26 E-value=0.17 Score=56.96 Aligned_cols=61 Identities=15% Similarity=0.150 Sum_probs=46.4
Q ss_pred ccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc
Q psy5570 713 LDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR 785 (875)
Q Consensus 713 l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~ 785 (875)
...+|.++.+||+- +.... ..+.+.+++++-..+ |..+.|||.|..+|.++|||.|...|.
T Consensus 74 ~~~~~~v~v~~g~~--~~~~~---------~~~~l~~~Lr~~~~~-G~~l~gictGaf~LA~aGLLdGrratt 134 (328)
T COG4977 74 APPIDILPVCGGLG--PERPV---------NAPALLAWLRRAARR-GARLGGLCTGAFVLAEAGLLDGRRATT 134 (328)
T ss_pred cCcceEEEEecCCC--ccccc---------chHHHHHHHHHHHhc-CCeEEEehHhHHHHHHhcccCCCCeee
Confidence 34477777777754 22222 126788899998875 999999999999999999999998444
No 199
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=88.71 E-value=1.3 Score=46.90 Aligned_cols=86 Identities=17% Similarity=0.292 Sum_probs=56.4
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcC------CeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCG------FEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLN 744 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG------~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~ 744 (875)
|+|.|.-.+|+. .+.+.++++..- +++..|.-+.|...+ =.+....||+|||--.+ |.+. + +
T Consensus 1 m~VlVYn~~GvS-p~~lkhtv~sLr~~~~p~y~v~~V~~~~Li~Ep-W~~~T~lLV~pGGaDlp-Y~~~--------l-~ 68 (253)
T COG4285 1 MNVLVYNGLGVS-PYSLKHTVRSLRLFAPPYYAVDRVDAQFLIKEP-WEETTLLLVFPGGADLP-YVQV--------L-Q 68 (253)
T ss_pred CceEEeCCCCCC-hHHHHHHHHHHHhhccchheEEEeeeheeecCc-chhceEEEEecCCCCch-HHHH--------h-c
Confidence 578888889988 777777665431 355555555555443 45677899999997532 1211 1 3
Q ss_pred hhHHHHHHHHHHCCCceEEEEehhH
Q psy5570 745 EGIKTQLNKFIARSDTFSFGVCNGC 769 (875)
Q Consensus 745 ~~i~~~v~~f~~r~g~~vLGICnGf 769 (875)
...-.-+..+.. +|+-.||||-|-
T Consensus 69 g~g~a~i~~yvk-~GG~fLGiCAG~ 92 (253)
T COG4285 69 GLGTARIKNYVK-EGGNFLGICAGG 92 (253)
T ss_pred chhhhhHHHHHh-cCCeEEEEeccc
Confidence 344455666776 599999999764
No 200
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=88.04 E-value=3 Score=46.62 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=32.6
Q ss_pred ccCccEEEEcCCcC----ccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 713 LDRFKGLVFPGGFS----YADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 713 l~~~d~lvlPGGfS----~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
-++|||+|+-|.-. |.|.. =| +. ...+.+++.+.++++||||-|-|+++.
T Consensus 97 ~~~~DG~IITGAp~e~~~fedv~----YW-------~E-l~~i~~w~~~~~~s~LgICwGaQa~a~ 150 (302)
T PRK05368 97 DEKFDGLIITGAPVEQLPFEDVD----YW-------DE-LKEILDWAKTHVTSTLFICWAAQAALY 150 (302)
T ss_pred cCCCCEEEEcCCCCCCccCCCCc----hH-------HH-HHHHHHHHHHcCCCEEEEcHHHHHHHH
Confidence 36899999999763 22222 01 01 223334444458999999999999876
No 201
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=87.45 E-value=2.2 Score=46.42 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=65.9
Q ss_pred cccceEEEEEecCCCCCHH----HHHHHHHHcCCe-eEEEEeecc--ccc---ccCccCccEEEEcCCcCccccccchhH
Q psy5570 667 GKKVISIAVLREEGINGDR----EMSAMAQVCGFE-VWDITVQDL--LEN---KITLDRFKGLVFPGGFSYADALGSAKG 736 (875)
Q Consensus 667 ~~~~~kVaIlv~pG~n~~~----e~~~A~~~aG~~-v~~V~~~dl--~~~---~~~l~~~d~lvlPGGfS~gD~l~~s~~ 736 (875)
++..+||+++-.-+. ... ....+|++.|++ +..+.+.+- ..+ ...|.++|+|++.||=- .+-
T Consensus 25 g~~~~rI~~iptAS~-~~~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq----~~l--- 96 (250)
T TIGR02069 25 GGEDAIIVIITSASE-EPREVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQ----LRI--- 96 (250)
T ss_pred CCCCceEEEEeCCCC-ChHHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCH----HHH---
Confidence 445679998854432 232 346688999984 555554311 111 12478999999999643 332
Q ss_pred HHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 737 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 737 ~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
...++..++.+.+++.+++ |+++.|.=-|.-+|.+
T Consensus 97 --~~~l~~t~l~~~l~~~~~~-G~vi~G~SAGA~i~~~ 131 (250)
T TIGR02069 97 --TSLLGDTPLLDRLRKRVHE-GIILGGTSAGAAVMSD 131 (250)
T ss_pred --HHHHcCCcHHHHHHHHHHc-CCeEEEccHHHHhccc
Confidence 3445778899999998885 9999999999888755
No 202
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=87.10 E-value=1.6 Score=46.22 Aligned_cols=98 Identities=18% Similarity=0.170 Sum_probs=66.3
Q ss_pred ccceEEEEEecCCCCCH---HHHHHHHHHcCCe-eEEEEeec--cccc---ccCccCccEEEEcCCcCccccccchhHHH
Q psy5570 668 KKVISIAVLREEGINGD---REMSAMAQVCGFE-VWDITVQD--LLEN---KITLDRFKGLVFPGGFSYADALGSAKGWA 738 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~---~e~~~A~~~aG~~-v~~V~~~d--l~~~---~~~l~~~d~lvlPGGfS~gD~l~~s~~~a 738 (875)
.+.+||+++-..+...+ .+...+|++.|++ +..+...+ -..+ ...+.++|+|++.||-- .+-
T Consensus 27 ~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~----~~~----- 97 (217)
T cd03145 27 GAGARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQ----LRI----- 97 (217)
T ss_pred CCCCcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcH----HHH-----
Confidence 35678988866554322 2456788999985 44444321 1112 23578999999999754 221
Q ss_pred HHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 739 ASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 739 ~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
...++..++.+.+++.+++ |++++|.=-|.-++.+.
T Consensus 98 ~~~l~~t~l~~~l~~~~~~-G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 98 TSALGGTPLLDALRKVYRG-GVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HHHHcCChHHHHHHHHHHc-CCEEEEccHHHHhhhhc
Confidence 3445677899999998884 99999998888887664
No 203
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=86.48 E-value=0.62 Score=46.48 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCeeEEEEeecc--cccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEE
Q psy5570 686 EMSAMAQVCGFEVWDITVQDL--LENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSF 763 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~dl--~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vL 763 (875)
...++|++.|+++..+...+- ..-...|.++|+|+|.||-- .+- ...++..++.+.|++.+++ |+++.
T Consensus 4 ~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~~----~~l-----~~~l~~t~l~~~i~~~~~~-G~vi~ 73 (154)
T PF03575_consen 4 KFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGDT----FRL-----LRQLKETGLDEAIREAYRK-GGVII 73 (154)
T ss_dssp HHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S-H----HHH-----HHHHHHTTHHHHHHHHHHT-TSEEE
T ss_pred HHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCCH----HHH-----HHHHHhCCHHHHHHHHHHC-CCEEE
Confidence 467899999999877765421 11133578999999999643 322 4456788999999999985 99999
Q ss_pred EEehhHHHHHhc
Q psy5570 764 GVCNGCQLMNLL 775 (875)
Q Consensus 764 GICnGfQiL~el 775 (875)
|.=-|.-++.+.
T Consensus 74 G~SAGA~i~~~~ 85 (154)
T PF03575_consen 74 GTSAGAMILGPS 85 (154)
T ss_dssp EETHHHHCTSSB
T ss_pred EEChHHhhccCc
Confidence 988888665443
No 204
>cd02203 PurL_repeat1 PurL subunit of the formylglycinamide ribonucleotide amidotransferase (FGAR-AT), first repeat. FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, phosphate, and glutamate in the fourth step of the purine biosynthetic pathway. In eukaryotes and Gram-negative bacteria, FGAR-AT is encoded by the purL gene as a multidomain protein with a molecular mass of about 140 kDa. In Gram-positive bacteria and archaea FGAR-AT is a complex of three proteins: PurS, PurL, and PurQ. PurL itself contains two tandem N- and C-terminal domains (four domains altogether). The N-terminal domains bind ATP and are related to the ATP-binding domains of HypE, ThiL, SelD and PurM.
Probab=81.07 E-value=0.45 Score=52.95 Aligned_cols=18 Identities=50% Similarity=0.359 Sum_probs=16.5
Q ss_pred ceeecccccCccccccee
Q psy5570 555 ECFDLAQSNSEHSRHWFF 572 (875)
Q Consensus 555 e~~~IGqvnseh~~h~~~ 572 (875)
||+++.|.||||||||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (313)
T cd02203 1 ELGMFAQMWSEHCRHKSF 18 (313)
T ss_pred ChhhhhhhhhcccCCcch
Confidence 578899999999999988
No 205
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=77.71 E-value=2.4 Score=47.90 Aligned_cols=92 Identities=9% Similarity=0.014 Sum_probs=55.8
Q ss_pred HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcch-hHHHHhhhhccccchhhhhhhhcchhhhhhccccc
Q psy5570 450 FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGK-VALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEV 527 (875)
Q Consensus 450 ~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~ 527 (875)
.|.|.||--. ||+.+|.||| -+++.|+. |+-...+- +.... +|.+ -.++.|..-+-
T Consensus 218 ~vtAMhDaTrGGla~aLnEmA-~aSgvgi~------I~ee~Ipv~~eVr~-------vce~--------lGiDPl~~anE 275 (339)
T COG0309 218 AVTAMHDATRGGLAGALNEMA-EASGVGIS------IEEEKIPVREEVRG-------VCEL--------LGLDPLELANE 275 (339)
T ss_pred hhhhccCCchhHHHHHHHHHH-HHcCCeEE------EeeccccccHHHHH-------HHHH--------hCCCHHHhhcC
Confidence 4567999999 9999999999 88889988 76554431 11111 1000 01122333345
Q ss_pred eeeEecCCHHHHHHHHHhhcCCCCCCCceeecccccCc
Q psy5570 528 GLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSE 565 (875)
Q Consensus 528 G~vv~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnse 565 (875)
|.+|...+.++..++++ .|+.++. .+...||.+..+
T Consensus 276 G~lv~~V~~~~a~~~l~-~L~~~~~-~~A~iIGeV~~~ 311 (339)
T COG0309 276 GKLVIAVPPEHAEEVLE-ALRSHGL-KDAAIIGEVVEE 311 (339)
T ss_pred ceEEEEECHHHHHHHHH-HHHhcCC-ccceeEEEEecc
Confidence 66644445555445444 3555554 789999999876
No 206
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=77.07 E-value=8 Score=39.30 Aligned_cols=46 Identities=13% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCeeEEEEee--c---cccc---ccCccCccEEEEcCCcCcccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ--D---LLEN---KITLDRFKGLVFPGGFSYADA 730 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~--d---l~~~---~~~l~~~d~lvlPGGfS~gD~ 730 (875)
.-+...+++.|+++..+.+- | +... ..+.+++|.|++.||.|.|+.
T Consensus 25 ~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~ 78 (163)
T TIGR02667 25 QYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGR 78 (163)
T ss_pred HHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 34566789999998876542 1 1111 111247999999999998654
No 207
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=76.99 E-value=10 Score=38.95 Aligned_cols=83 Identities=10% Similarity=0.102 Sum_probs=53.9
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHc---CCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVC---GFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~a---G~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
||++|+-.-.+++-..++.++.+. |.++.++.+.+.. ..++.+||.|||.++--+|... +.+
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~g~~v~~~~~~~~~--~~~l~~yD~vIlGspi~~G~~~-------------~~~ 65 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKEGIQCDVVNLHRIE--EPDLSDYDRVVIGASIRYGHFH-------------SAL 65 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCCCCeEEEEEhhhcC--ccCHHHCCEEEEECccccCCcC-------------HHH
Confidence 678888888888888887766552 5667666554322 2368899998887766444433 234
Q ss_pred HHHHHHHHH-CCCceEEEEehh
Q psy5570 748 KTQLNKFIA-RSDTFSFGVCNG 768 (875)
Q Consensus 748 ~~~v~~f~~-r~g~~vLGICnG 768 (875)
.+++++... -.++++.-+|.|
T Consensus 66 ~~fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 66 YKFVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHHHHHHHHhCCCeEEEEEec
Confidence 444444321 137888888877
No 208
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=76.78 E-value=5.2 Score=36.33 Aligned_cols=44 Identities=32% Similarity=0.447 Sum_probs=34.1
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcC
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFS 726 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS 726 (875)
|||| +.| ..++..+|++.||+|+.+. +..+++.+|++|+-|.-.
T Consensus 3 kIAV--E~~---Ls~v~~~L~~~GyeVv~l~------~~~~~~~~daiVvtG~~~ 46 (80)
T PF03698_consen 3 KIAV--EEG---LSNVKEALREKGYEVVDLE------NEQDLQNVDAIVVTGQDT 46 (80)
T ss_pred eEEe--cCC---chHHHHHHHHCCCEEEecC------CccccCCcCEEEEECCCc
Confidence 5665 333 5578899999999998843 345688999999999765
No 209
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=72.92 E-value=10 Score=37.38 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=43.8
Q ss_pred HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEE
Q psy5570 685 REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFG 764 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLG 764 (875)
.....+|.+.|..+.+|+. ...+.+|+.||+|..+... +...+.+++|.++-|+.++|
T Consensus 29 ~~~~~~l~~~gi~~d~v~~------~~~l~~y~~vi~P~~~~~~----------------~~~~~~l~~~v~~GG~li~~ 86 (154)
T cd03143 29 LALYRALRELGIPVDVVPP------DADLSGYKLVVLPDLYLLS----------------DATAAALRAYVENGGTLVAG 86 (154)
T ss_pred HHHHHHHHHCCCCEEEECC------CCCcccCCEEEECchhcCC----------------HHHHHHHHHHHHCCCEEEEe
Confidence 4568899999999988763 3457899999999987653 35677889999964444444
No 210
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=71.67 E-value=7.4 Score=40.83 Aligned_cols=63 Identities=21% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHH-HcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEe
Q psy5570 688 SAMAQ-VCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 688 ~~A~~-~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGIC 766 (875)
...++ ..|++|+...-.+... +..|++||.||+...+ +|.+ .+.-+++|++|+++ |+.++||.
T Consensus 25 ~~ll~~~~~~~v~~~~~~~~~~-~~~L~~~Dvvv~~~~~--~~~l------------~~~~~~al~~~v~~-Ggglv~lH 88 (217)
T PF06283_consen 25 AQLLEESEGFEVTVTEDPDDLT-PENLKGYDVVVFYNTG--GDEL------------TDEQRAALRDYVEN-GGGLVGLH 88 (217)
T ss_dssp HHHHHHTTCEEEEECCSGGCTS-HHCHCT-SEEEEE-SS--CCGS-------------HHHHHHHHHHHHT-T-EEEEEG
T ss_pred HHHhccCCCEEEEEEeCcccCC-hhHhcCCCEEEEECCC--CCcC------------CHHHHHHHHHHHHc-CCCEEEEc
Confidence 44555 4577776533211111 3459999999999888 4444 45778899999995 99999987
No 211
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=71.36 E-value=5 Score=42.03 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=34.4
Q ss_pred HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEE
Q psy5570 685 REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFG 764 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLG 764 (875)
...+.+|.+.|..+.+|+.. .++++|..||+|.-... ++...+.+++|.++-|+++++
T Consensus 33 ~~~y~al~~~gi~vDvv~~~------~dL~~Ykllv~P~~~~l----------------~~~~~~~L~~yV~~GG~li~~ 90 (207)
T PF08532_consen 33 RGWYRALRELGIPVDVVSPD------DDLSGYKLLVLPSLYIL----------------SPEFAERLRAYVENGGTLILT 90 (207)
T ss_dssp HHHHHHHHTTT--EEEE-TT------S--TT-SEEEES--SC------------------HHH---HHHHHT-SS-EEE-
T ss_pred HHHHHHHHHcCCceEEecCc------CCcccCcEEEEeeEEEE----------------ChHHHHHHHHHHHCCCEEEEE
Confidence 45678999999999998753 27999999999997753 456677889999865666666
Q ss_pred Ee
Q psy5570 765 VC 766 (875)
Q Consensus 765 IC 766 (875)
-+
T Consensus 91 ~~ 92 (207)
T PF08532_consen 91 PR 92 (207)
T ss_dssp TT
T ss_pred cc
Confidence 33
No 212
>PRK09271 flavodoxin; Provisional
Probab=70.67 E-value=24 Score=35.40 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=37.3
Q ss_pred eEEEEEecCCCCCHHHHHHH----HHHcCCeeEEEEee--cccccccCccCccEEEEcCC-cCccccc
Q psy5570 671 ISIAVLREEGINGDREMSAM----AQVCGFEVWDITVQ--DLLENKITLDRFKGLVFPGG-FSYADAL 731 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A----~~~aG~~v~~V~~~--dl~~~~~~l~~~d~lvlPGG-fS~gD~l 731 (875)
|||.|+-.--+++-..++.+ |+..|+++.+..+. ++.....++.++|+|+|.-- ...|+.+
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~~G~~p 68 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDNAGRTP 68 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccCCCcCC
Confidence 68888877777777777554 45568887654433 22222335667899888762 2334444
No 213
>COG1973 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=70.05 E-value=6.3 Score=44.38 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=61.3
Q ss_pred CceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccc---cceeccccccccccCCcccccc
Q psy5570 118 ADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK---FLFASSRSIHIFHYSFSGRFAF 194 (875)
Q Consensus 118 sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~---~i~ls~n~~~~~~~~~~~~w~~ 194 (875)
.|++|+|+. .. -+..+++.--.-...=||.++.++-.-|+|.+...|+.++. ||.++. .
T Consensus 112 DDaGvvr~~--~~-yivvaiDGiHSRLSefPFLaGFhvtRAalRDv~vmGa~p~alisDiHlaD---------------D 173 (449)
T COG1973 112 DDAGVVRIE--ND-YIVVAIDGIHSRLSEFPFLAGFHVTRAALRDVYVMGARPVALISDIHLAD---------------D 173 (449)
T ss_pred CCCCeEEec--Cc-eEEEEecchhhhhhcCcchhhhHHHHHHHHHHHHcCcccceeeeeeeecc---------------C
Confidence 589999985 22 45555554444444469999999999999999998876644 443331 2
Q ss_pred cCcc-hhcccccccccchHHhhhhcCCcccCC
Q psy5570 195 KNHG-IYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 195 g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
|+-+ ++++ ..|++-.|++.|+|++.|
T Consensus 174 gDVgklfDf-----~AGvtaVsea~~vPl~aG 200 (449)
T COG1973 174 GDVGKLFDF-----TAGVTAVSEAVGVPLLAG 200 (449)
T ss_pred cchhhhhhh-----hhhhhHHHHHhCCceecc
Confidence 4445 8888 778999999999999853
No 214
>PRK03094 hypothetical protein; Provisional
Probab=68.69 E-value=10 Score=34.41 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=33.5
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcC
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFS 726 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS 726 (875)
|||| . ++..++..+|++-|++|+.+. ++.+.+.+|++|+.|--+
T Consensus 3 kIaV--E---~~Ls~i~~~L~~~GYeVv~l~------~~~~~~~~Da~VitG~d~ 46 (80)
T PRK03094 3 KIGV--E---QSLTDVQQALKQKGYEVVQLR------SEQDAQGCDCCVVTGQDS 46 (80)
T ss_pred eEEe--e---cCcHHHHHHHHHCCCEEEecC------cccccCCcCEEEEeCCCc
Confidence 6776 3 446678999999999998852 344578899999999643
No 215
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=67.59 E-value=27 Score=46.24 Aligned_cols=113 Identities=11% Similarity=-0.040 Sum_probs=68.6
Q ss_pred cCchHHHHHHHHHHH-hH-------HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhcc
Q psy5570 433 VDVMGKGKVAFNSNS-LV-------FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLG 503 (875)
Q Consensus 433 ~~~~~~~~~~f~~~~-li-------~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~ 503 (875)
-+++.....+.+++. +. ...|.||..- |+..+|.||+ . ..|+. ||+...+..-+. .+.
T Consensus 307 ~~s~~~~~~iq~~i~~~~~~~~~~~i~~sI~D~Gagg~sn~l~El~-~--~~G~~------i~L~~lP~~~~s----~L~ 373 (1202)
T TIGR01739 307 ADSPLDVNKILTALALLTDDVKTPCIVGSIRPLGPCSVKEHLTALL-P--PCGAE------LDLSNLPDEVVA----ALA 373 (1202)
T ss_pred CCCHHHHHHHHHHHHHHHHhccCCeeEEEecCCCCchHHHHHHHHh-c--cCceE------EEhHhCCchhhc----ccc
Confidence 344555555555554 22 3388899999 9999999999 4 56888 888765421000 001
Q ss_pred ccchhhhhhhhcchhhhhhcccc---ceeeEec----------CCHHHHHHHHHhhcCCCCCCCceeecccccCc
Q psy5570 504 QIGLLFIYFIVQRTKLCIVQRHE---VGLAFDE----------WDLEYYTDIFRNKLKRNPTSVECFDLAQSNSE 565 (875)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~LFsE~---~G~vv~~----------~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnse 565 (875)
..+.. ++-.+++......|||. +.++|.+ ++++.++++.+. .++++.+||+++.+
T Consensus 374 ~~~~~-~~e~~e~~v~~~~~N~~~~~~~LaV~~~~~~~~~~~~~~l~~~~~ic~r------e~cp~~vlG~~t~~ 441 (1202)
T TIGR01739 374 RSSPA-NRVENEKMVKQYFLNVVCSVVFLTVKNTPHNTGTEGVTPLERLKTACRM------FGCPVKVLGKLVPL 441 (1202)
T ss_pred CCChh-hhHHHHHHhhhhcccccceeEEEEECCcccccccccchHHHHHHHHHHH------CCCCEEEEEEEeCC
Confidence 11100 11112222212345555 5566777 678888888876 78999999999887
No 216
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=65.03 E-value=31 Score=33.70 Aligned_cols=84 Identities=12% Similarity=0.012 Sum_probs=47.8
Q ss_pred eEEEEEecCCCCCHHHHHHHHHH----cCCeeEE-EEeecccccccCccCccEEEEcCCc-CccccccchhHHHHHHhhc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQV----CGFEVWD-ITVQDLLENKITLDRFKGLVFPGGF-SYADALGSAKGWAASLLLN 744 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~----aG~~v~~-V~~~dl~~~~~~l~~~d~lvlPGGf-S~gD~l~~s~~~a~ail~~ 744 (875)
||+.|+-.--+++-..++.++.+ .|+++.. ..+.++.....++.++|.|+|.... ..|+.+.
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~d~iilgs~t~~~g~~p~------------ 68 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGTLADAPLDPENYDLVFLGTWTWERGRTPD------------ 68 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccccccCcCChhhCCEEEEEcCeeCCCcCCH------------
Confidence 67888877777777777666544 4777652 2223322223457789988886643 2333332
Q ss_pred hhHHHHHHHHHHCCCceEEEEehh
Q psy5570 745 EGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 745 ~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
.+.++++.... +++.+.-+|.|
T Consensus 69 -~~~~fl~~l~~-~~k~~avfgtg 90 (140)
T TIGR01754 69 -EMKDFIAELGY-KPSNVAIFGTG 90 (140)
T ss_pred -HHHHHHHHhcc-cCCEEEEEEcC
Confidence 34445544433 36766555544
No 217
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=63.65 E-value=13 Score=39.73 Aligned_cols=91 Identities=16% Similarity=0.243 Sum_probs=62.8
Q ss_pred cceEEEEEecCCCCCHH-----HHHHHHHHcCCeeEEEEee--cccccccCccCccEEEEcCCcCccccccchhHHHHHH
Q psy5570 669 KVISIAVLREEGINGDR-----EMSAMAQVCGFEVWDITVQ--DLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASL 741 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~-----e~~~A~~~aG~~v~~V~~~--dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ai 741 (875)
++++|+-|=+-+.-.+. ..++||++.|.++..++.. ++..=+..|.+.|+|.+-||=.+ +- -..
T Consensus 31 ~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGGNTF-~L--------L~~ 101 (224)
T COG3340 31 KRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGGNTF-NL--------LQE 101 (224)
T ss_pred CCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCchHH-HH--------HHH
Confidence 45677766566655444 3488999999999888754 11111334666999999888664 22 334
Q ss_pred hhchhHHHHHHHHHHCCCceEEEEehhH
Q psy5570 742 LLNEGIKTQLNKFIARSDTFSFGVCNGC 769 (875)
Q Consensus 742 l~~~~i~~~v~~f~~r~g~~vLGICnGf 769 (875)
++...+.+.|++-.++ |+|.+|+--|-
T Consensus 102 lke~gld~iIr~~vk~-G~~YiG~SAGA 128 (224)
T COG3340 102 LKETGLDDIIRERVKA-GTPYIGWSAGA 128 (224)
T ss_pred HHHhCcHHHHHHHHHc-CCceEEeccCc
Confidence 6777899999999984 99999965443
No 218
>KOG3939|consensus
Probab=61.21 E-value=14 Score=40.24 Aligned_cols=93 Identities=14% Similarity=0.053 Sum_probs=60.3
Q ss_pred ceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc
Q psy5570 119 DVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG 198 (875)
Q Consensus 119 DaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~ 198 (875)
|++|+-+.+ ..-.++=++++--.+. -|||.+++.|.+.-+..|-|+|...-+++-..+. -+...+...-+
T Consensus 2 d~~viplrh-~gl~lvqttdffyp~v-ddpy~mgriacanvlsdlyamgvtecdnmlmll~--------vs~~~~ekerd 71 (312)
T KOG3939|consen 2 DCCVIPLRH-GGLLLVQTTDFFYPLV-DDPYMMGRIACANVLSDLYAMGVTECDNMLMLLS--------VSTSMSEKERD 71 (312)
T ss_pred CceEEeecc-CCeEEEEeeceeeecc-CChHHhhHHHHHHHHHHHHHhcccccccchhhhh--------hhhhhhhhhhc
Confidence 667776663 4556667777765554 4999999999999999999999765554322211 11111101111
Q ss_pred -hhcccccccccchHHhhhhcCCcccCC
Q psy5570 199 -IYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 199 -l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
..-++ ++|+.|++++-|+|+++|
T Consensus 72 ~v~pl~----~~gfkdaa~e~gt~v~gg 95 (312)
T KOG3939|consen 72 VVIPLI----IQGFKDAAEEAGTPVTGG 95 (312)
T ss_pred hhhHHH----HHHhHHHHHhcCCceecC
Confidence 22232 778889999999999864
No 219
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=59.79 E-value=4.8 Score=41.60 Aligned_cols=54 Identities=20% Similarity=0.264 Sum_probs=33.5
Q ss_pred cCccCccEEEEcCCcCccccccc--hhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 711 ITLDRFKGLVFPGGFSYADALGS--AKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 711 ~~l~~~d~lvlPGGfS~gD~l~~--s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.....|||+|+-|.-. .-+.- ..=| +. ...+.+|..+..+++|+||-|.|+...
T Consensus 58 i~~~~yDGlIITGApv--e~~~fe~v~Yw-------~E-l~~i~dwa~~~v~stl~iCWgaqaal~ 113 (175)
T cd03131 58 IRDAKFDGLIVTGAPV--EHLPFEQVDYW-------EE-LTEILDWAKTHVTSTLFSCWAAMAALY 113 (175)
T ss_pred ccccCCCEEEEeCCCc--ccCCccccchH-------HH-HHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 3467899999999754 11111 0001 12 223344555568999999999999655
No 220
>KOG0026|consensus
Probab=59.61 E-value=32 Score=35.43 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=21.1
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.+.|.+|.- -.|++|||.|.|-+.+
T Consensus 83 ~~~i~~f~~--~iP~fGvCMGlQCi~e 107 (223)
T KOG0026|consen 83 LQTVLELGP--LVPLFGVCMGLQCIGE 107 (223)
T ss_pred HHHHHHhCC--CCceeeeehhhhhhhh
Confidence 467777764 5899999999999998
No 221
>TIGR00476 selD selenium donor protein. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelD, known as selenophosphate synthetase, selenium donor protein, and selenide,water dikinase. SelD provides reduced selenium for the selenium transferase SelA. This protein itself contains selenocysteine in many species; any sequence not aligning to the beginning of the model is likely have selenocysteine residue incorrectly interpreted as a stop codon upstream of the given sequence. The SelD protein also provides selenophosphate for the enzyme tRNA 2-selenouridine synthase, which catalyz
Probab=58.25 E-value=6 Score=44.82 Aligned_cols=35 Identities=6% Similarity=-0.057 Sum_probs=29.3
Q ss_pred HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcc
Q psy5570 450 FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKG 491 (875)
Q Consensus 450 ~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~ 491 (875)
.+.|+||+++ ||+..+.||+ -+.++|++ ||+...+
T Consensus 232 ~v~a~~DiT~gGL~~~L~~ia-~~sg~g~~------I~~~~iP 267 (347)
T TIGR00476 232 NAHAATDITGFGILGHAQNMA-KNSNVEAR------IVIENLP 267 (347)
T ss_pred CceEEEeccCccHHHHHHHHH-hcCCCeEE------EEeCCCC
Confidence 4789999997 9999999999 77788988 8766544
No 222
>PRK06242 flavodoxin; Provisional
Probab=58.24 E-value=35 Score=33.22 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=48.7
Q ss_pred eEEEEEecCC-CCCHHHHHHHHHH-cCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 671 ISIAVLREEG-INGDREMSAMAQV-CGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 671 ~kVaIlv~pG-~n~~~e~~~A~~~-aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
||+.|+-+-+ +++-..++.++.+ .+.++.. +.+. ...++.++|.|||-.- .|...+ .+.++
T Consensus 1 mk~~IiY~S~~tGnT~~~A~~ia~~l~~~~~~--i~~~--~~~~~~~~d~ii~g~p-vy~~~~------------~~~~~ 63 (150)
T PRK06242 1 MKALIVYASVHHGNTEKIAKAIAEVLDAEVID--PGDV--NPEDLSEYDLIGFGSG-IYFGKF------------HKSLL 63 (150)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhcCcEEec--HHHC--CcccHhHCCEEEEeCc-hhcCCc------------CHHHH
Confidence 6788888887 6888999988876 4654433 2211 1245789998888653 232222 23444
Q ss_pred HHHHHHHHCCCceEEEEehh
Q psy5570 749 TQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnG 768 (875)
+.+.+...-.|+++.-+|.+
T Consensus 64 ~fl~~~~~~~~k~~~~f~t~ 83 (150)
T PRK06242 64 KLIEKLPPVSGKKAFIFSTS 83 (150)
T ss_pred HHHHhhhhhcCCeEEEEECC
Confidence 55544322137888887744
No 223
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=58.13 E-value=40 Score=36.60 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=51.4
Q ss_pred cceEEEEEecCCCC-----------CHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcC-ccccccchhH
Q psy5570 669 KVISIAVLREEGIN-----------GDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFS-YADALGSAKG 736 (875)
Q Consensus 669 ~~~kVaIlv~pG~n-----------~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS-~gD~l~~s~~ 736 (875)
.+++|+++.-.|-- ....+..+|++. ++|..+... . ..-++++|+||+.|--. +
T Consensus 145 ~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~---~-~~IP~~~d~Lvi~~P~~~l--------- 210 (271)
T PF09822_consen 145 EKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLA---N-EEIPDDADVLVIAGPKTDL--------- 210 (271)
T ss_pred cCceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCc---c-cccCCCCCEEEEECCCCCC---------
Confidence 45567776654444 456778889888 988887543 2 22258999999999765 2
Q ss_pred HHHHHhhchhHHHHHHHHHHCCCceEEE
Q psy5570 737 WAASLLLNEGIKTQLNKFIARSDTFSFG 764 (875)
Q Consensus 737 ~a~ail~~~~i~~~v~~f~~r~g~~vLG 764 (875)
.+.-..+|.+|+.+ |+.+|-
T Consensus 211 -------s~~e~~~l~~yl~~-GG~ll~ 230 (271)
T PF09822_consen 211 -------SEEELYALDQYLMN-GGKLLI 230 (271)
T ss_pred -------CHHHHHHHHHHHHc-CCeEEE
Confidence 34567789999996 776554
No 224
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=58.02 E-value=18 Score=35.79 Aligned_cols=55 Identities=22% Similarity=0.313 Sum_probs=34.3
Q ss_pred ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHH-hcCCCC
Q psy5570 710 KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMN-LLGWFS 779 (875)
Q Consensus 710 ~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~-elGlLp 779 (875)
...++.+|.+||-||-+.+-.--. -+++++.+++ -.++++.|+| ||-++ .+||-.
T Consensus 80 ~e~~n~aDvvVLlGGLaMP~~gv~----------~d~~kel~ee---~~~kkliGvC--fm~mF~ragW~e 135 (154)
T COG4090 80 REELNSADVVVLLGGLAMPKIGVT----------PDDAKELLEE---LGNKKLIGVC--FMNMFERAGWDE 135 (154)
T ss_pred ccccccccEEEEEcccccCcCCCC----------HHHHHHHHHh---cCCCceEEee--HHHHHHHcCcch
Confidence 445788999999999997544322 2234444442 2356899999 33333 477743
No 225
>PRK05568 flavodoxin; Provisional
Probab=52.94 E-value=75 Score=30.69 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=37.1
Q ss_pred EEEEEecCCCCCHHHHHHHHHH----cCCeeEEEEeecccccccCccCccEEEEcCCc
Q psy5570 672 SIAVLREEGINGDREMSAMAQV----CGFEVWDITVQDLLENKITLDRFKGLVFPGGF 725 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~----aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGf 725 (875)
++.|+-+-+++|-..++.++.+ .|.+++++.+.+.. ..++.++|+|+|.-.-
T Consensus 3 ~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~--~~~~~~~d~iilgsp~ 58 (142)
T PRK05568 3 KINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEAS--VDDVKGADVVALGSPA 58 (142)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCC--HHHHHhCCEEEEECCc
Confidence 6888888899988877666544 57888776554322 2357899998886655
No 226
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=52.03 E-value=29 Score=34.09 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=38.3
Q ss_pred EEecCCCCCHHHHHHHHHH-cCCeeEEEEeecccccccCccCccEEEEcCCcCcccccc
Q psy5570 675 VLREEGINGDREMSAMAQV-CGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALG 732 (875)
Q Consensus 675 Ilv~pG~n~~~e~~~A~~~-aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~ 732 (875)
|+-+-++++-..++..+.+ .+.+...+.+.++.....++.+||.||+.++--+|....
T Consensus 2 IvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~~~~~~~yD~vi~gspiy~g~~~~ 60 (143)
T PF12724_consen 2 IVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEEDEPDLSDYDAVIFGSPIYAGRIPG 60 (143)
T ss_pred EEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhhcccccccCCEEEEEEEEECCcCCH
Confidence 3445667777777777666 455555655555433456799999999988776655553
No 227
>PRK06756 flavodoxin; Provisional
Probab=51.19 E-value=78 Score=31.02 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=50.2
Q ss_pred eEEEEEecCCCCCHHHHHHHH----HHcCCeeEEEEeecccccccCccCccEEEEcCCcCcc--ccccchhHHHHHHhhc
Q psy5570 671 ISIAVLREEGINGDREMSAMA----QVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYA--DALGSAKGWAASLLLN 744 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~----~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~g--D~l~~s~~~a~ail~~ 744 (875)
|||.|+-+-.+++-..++.++ ++.|.+++.+...+.. ...++.++|.|+|.- ..|+ ..+.
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~-~~~~~~~~d~vi~gs-pt~~~g~~p~------------ 67 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSP-EASILEQYDGIILGA-YTWGDGDLPD------------ 67 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccC-CHHHHhcCCeEEEEe-CCCCCCCCcH------------
Confidence 589998888888888776655 4458887765543221 124578899887764 3332 2221
Q ss_pred hhHHHHHHHHH--HCCCceEEEEehhHH
Q psy5570 745 EGIKTQLNKFI--ARSDTFSFGVCNGCQ 770 (875)
Q Consensus 745 ~~i~~~v~~f~--~r~g~~vLGICnGfQ 770 (875)
.+.+++.+.. +-+|+++.-++.|-+
T Consensus 68 -~~~~fl~~l~~~~l~~k~~~~fgt~~~ 94 (148)
T PRK06756 68 -DFLDFYDAMDSIDLTGKKAAVFGSCDS 94 (148)
T ss_pred -HHHHHHHHHhcCCCCCCEEEEEeCCCC
Confidence 2344443331 113788888776443
No 228
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=50.29 E-value=21 Score=43.80 Aligned_cols=69 Identities=17% Similarity=0.148 Sum_probs=50.3
Q ss_pred HHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEe
Q psy5570 689 AMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 689 ~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGIC 766 (875)
.||.-+-++|..|++.|+... ..+++.|.||=.|.. +.+..++..| .++.+.++|++|.++ |+=++||+
T Consensus 475 E~LSG~p~dV~FisFdDi~~~-gi~~didViIN~G~a--~ta~SGG~~W-----~d~~~~~aLr~fV~~-GGglIGVg 543 (719)
T TIGR02336 475 ECLSGMPVEVEFISFDDILEH-GIDSDIDVIINGGDA--DTAWSGGDVW-----TNPKLVETVRAWVRG-GGGFVGVG 543 (719)
T ss_pred HHhcCCCeeEEEecHHHHhhc-CCCcCCcEEEecCcc--cccccCcccc-----CCHHHHHHHHHHHHc-CCeEEEEE
Confidence 344445588889999998775 457888888877642 3455554455 378899999999996 77677999
No 229
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=49.66 E-value=45 Score=35.69 Aligned_cols=67 Identities=15% Similarity=0.173 Sum_probs=46.5
Q ss_pred HHHHHHHHHcCCeeEEEEeeccc--ccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceE
Q psy5570 685 REMSAMAQVCGFEVWDITVQDLL--ENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFS 762 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~dl~--~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~v 762 (875)
.-++..|++.||+|.+.+..|-. -++..|+++|.||+=+-.. +|.+ ++...+.+++++++ |+=+
T Consensus 26 ~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~-~~~l------------~~eq~~~l~~~V~~-GgGl 91 (215)
T cd03142 26 GTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIA-HDEV------------KDEIVERVHRRVLD-GMGL 91 (215)
T ss_pred HHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCC-cCcC------------CHHHHHHHHHHHHc-CCCE
Confidence 44577888999999876655432 2234699999999855443 3444 34677889999985 7777
Q ss_pred EEE
Q psy5570 763 FGV 765 (875)
Q Consensus 763 LGI 765 (875)
+||
T Consensus 92 v~l 94 (215)
T cd03142 92 IVL 94 (215)
T ss_pred EEE
Confidence 774
No 230
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=46.53 E-value=32 Score=40.15 Aligned_cols=46 Identities=24% Similarity=0.280 Sum_probs=32.6
Q ss_pred HHHHHHHHHHcCCeeEEEEee--ccccc----ccCccCccEEEEcCCcCccc
Q psy5570 684 DREMSAMAQVCGFEVWDITVQ--DLLEN----KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 684 ~~e~~~A~~~aG~~v~~V~~~--dl~~~----~~~l~~~d~lvlPGGfS~gD 729 (875)
-+-+...++++|+++....+- |...- +..++++|.||..||.|.||
T Consensus 205 ~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~SvG~ 256 (404)
T COG0303 205 SYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVSVGD 256 (404)
T ss_pred HHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCccCcc
Confidence 345677889999998887653 11100 22356799999999999987
No 231
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=44.56 E-value=33 Score=40.22 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCeeEEEEee--c---cccc-ccCccCccEEEEcCCcCccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ--D---LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~--d---l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
.-+...+++.|+++....+- | +... ..-++++|+||+.||.|.||
T Consensus 223 ~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S~G~ 273 (419)
T PRK14690 223 PMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGASAGD 273 (419)
T ss_pred HHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCccCCC
Confidence 34466788899998766542 1 1111 11246799999999999985
No 232
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=44.53 E-value=65 Score=33.55 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=37.3
Q ss_pred eEEEEEecCCCCCHHHHHHHHHH----c-CCeeEEEEeecccc------------------cccCccCccEEEEcCCcCc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQV----C-GFEVWDITVQDLLE------------------NKITLDRFKGLVFPGGFSY 727 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~----a-G~~v~~V~~~dl~~------------------~~~~l~~~d~lvlPGGfS~ 727 (875)
+||+|+-.-..++-..++.++.+ . |++++++...|... ...++.++|+|+|--.-=+
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~ 80 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRF 80 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccc
Confidence 37888877777777777665544 3 88888776543211 1245678999888665533
Q ss_pred cc
Q psy5570 728 AD 729 (875)
Q Consensus 728 gD 729 (875)
|.
T Consensus 81 g~ 82 (197)
T TIGR01755 81 GN 82 (197)
T ss_pred cC
Confidence 33
No 233
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=42.88 E-value=80 Score=32.58 Aligned_cols=83 Identities=14% Similarity=0.218 Sum_probs=50.7
Q ss_pred eEEEEEecCCCCC-HHHH----HHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhch
Q psy5570 671 ISIAVLREEGING-DREM----SAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNE 745 (875)
Q Consensus 671 ~kVaIlv~pG~n~-~~e~----~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~ 745 (875)
||+.|+ +-+..+ -.++ +.-|++.|.+|++.....+. +.++++||++||.----||. .++
T Consensus 1 Mk~LIl-Ystr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~~--~~~l~~ydavVIgAsI~~~h-------------~~~ 64 (175)
T COG4635 1 MKTLIL-YSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAVE--EPALEDYDAVVIGASIRYGH-------------FHE 64 (175)
T ss_pred CceEEE-EecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhhh--ccChhhCceEEEecchhhhh-------------hHH
Confidence 466665 333222 2333 45677889999886543222 24789999999954333321 255
Q ss_pred hHHHHHHHHHHC-CCceEEEEehhH
Q psy5570 746 GIKTQLNKFIAR-SDTFSFGVCNGC 769 (875)
Q Consensus 746 ~i~~~v~~f~~r-~g~~vLGICnGf 769 (875)
.+.++|+++.+. ..+|+.-+|.+.
T Consensus 65 ~~~~Fv~k~~e~L~~kP~A~f~vnl 89 (175)
T COG4635 65 AVQSFVKKHAEALSTKPSAFFSVNL 89 (175)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeeh
Confidence 667777666541 378999999653
No 234
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=42.04 E-value=72 Score=37.42 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccccccchhHHHHH-----HhhchhHHHHHHH
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAAS-----LLLNEGIKTQLNK 753 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~a-----il~~~~i~~~v~~ 753 (875)
.-+...+++.|+++.....- | +... ...++.+|.||+.||-+.++. +-.+.-+.. +..|+...+.+++
T Consensus 23 ~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgpt~d-D~t~eava~~~g~~l~~~~~~~~~i~~ 101 (413)
T TIGR00200 23 QWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLGPTSD-DLTAETIATAKGEPLVLNEAWLKEIER 101 (413)
T ss_pred HHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCCCCCc-ccHHHHHHHHhCCCcEECHHHHHHHHH
Confidence 45577889999998765432 1 1111 122467999999999775332 221222222 3457788899999
Q ss_pred HHHCCCceE
Q psy5570 754 FIARSDTFS 762 (875)
Q Consensus 754 f~~r~g~~v 762 (875)
++.+.|+++
T Consensus 102 ~~~~~g~~~ 110 (413)
T TIGR00200 102 YFHETGRVM 110 (413)
T ss_pred HHHhcCCCC
Confidence 887656653
No 235
>PF09508 Lact_bio_phlase: Lacto-N-biose phosphorylase; InterPro: IPR012711 The gene which codes for this protein in gut-bacteria is located in a novel putative operon for galactose metabolism. The protein appears to be a carbohydrate-processing phosphorolytic enzyme (2.4.1.211 from EC), unlike either glycoside hydrolases or glycoside lyase. Intestinal colonisation by Bifidobacteria is important for human health, especially in paediatrics, because colonisation seems to prevent infection by some pathogenic bacteria that cause diarrhoea or other illnesses. The operon seems to be involved in intestinal colonisation by Bifidobacteria mediated by metabolism of mucin sugars. In addition, it may also resolve the question of the nature of the bifidus factor in human milk as the lacto-N-biose structure found in milk oligosaccharides. ; GO: 0016758 transferase activity, transferring hexosyl groups; PDB: 2ZUW_A 2ZUU_C 2ZUT_D 2ZUV_A 2ZUS_B.
Probab=41.46 E-value=41 Score=41.25 Aligned_cols=71 Identities=23% Similarity=0.278 Sum_probs=47.8
Q ss_pred HHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEe
Q psy5570 687 MSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 687 ~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGIC 766 (875)
+..||.-+-++|+.+++.|+..+ ..+++.|.||=.|-. +.+..++.-| .++.+..+|++|..+ |+=.+||+
T Consensus 470 ilEaLSGlp~dV~FISFdDi~~~-gi~~didViINaGdA--~TA~SGG~~W-----~d~~iv~~lr~fV~~-GGGfIGVG 540 (716)
T PF09508_consen 470 ILEALSGLPFDVEFISFDDIREN-GILEDIDVIINAGDA--GTAWSGGENW-----KDPKIVTALREFVYN-GGGFIGVG 540 (716)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHH--S-TT--EEEEEEST--TSTTT-GGGG-----G-HHHHHHHHHHHHT-T-EEEEEE
T ss_pred HHHHhcCCCceeEEecHHHHhhc-CCcccCCEEEecCcc--cccccCcccc-----CCHHHHHHHHHHHHc-CCCEEEcC
Confidence 34555556689999999998875 457888888876642 3445554445 488999999999995 88888987
No 236
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=38.19 E-value=82 Score=31.74 Aligned_cols=76 Identities=16% Similarity=0.232 Sum_probs=57.6
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeeccccc------ccCccCccEEEEcCCcCccccccchhHHHHHHhhch
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLEN------KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNE 745 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~------~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~ 745 (875)
++.+...|-++|..+-...++..||+|..+...|...= +.++..+.-.||-|=+-=|..+
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVP-------------- 92 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVP-------------- 92 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCC--------------
Confidence 67888899999999999999999999999887654311 3456778888888776656555
Q ss_pred hHHHHHHHHHHCCCce-EEEE
Q psy5570 746 GIKTQLNKFIARSDTF-SFGV 765 (875)
Q Consensus 746 ~i~~~v~~f~~r~g~~-vLGI 765 (875)
.++|++|++ ++| +.|+
T Consensus 93 --a~aI~~ll~--~~pd~~Gl 109 (149)
T COG3019 93 --AEAIARLLA--EKPDAKGL 109 (149)
T ss_pred --HHHHHHHHh--CCCCccee
Confidence 246778887 366 7774
No 237
>PRK05569 flavodoxin; Provisional
Probab=37.59 E-value=1.7e+02 Score=28.14 Aligned_cols=51 Identities=12% Similarity=-0.006 Sum_probs=35.2
Q ss_pred EEEEEecCCCCCHHHHHHHHHH----cCCeeEEEEeecccccccCccCccEEEEcCC
Q psy5570 672 SIAVLREEGINGDREMSAMAQV----CGFEVWDITVQDLLENKITLDRFKGLVFPGG 724 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~----aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGG 724 (875)
||.|+-+-+++|-..++.++.+ .|.++.+....+.. ..++.++|+|+|.--
T Consensus 3 ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~--~~~~~~~d~iilgsP 57 (141)
T PRK05569 3 KVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAK--VEDVLEADAVAFGSP 57 (141)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCC--HHHHhhCCEEEEECC
Confidence 6888888888888777666554 58887666544322 235789999988543
No 238
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.14 E-value=1.4e+02 Score=27.47 Aligned_cols=68 Identities=4% Similarity=-0.017 Sum_probs=45.2
Q ss_pred CCHHHHHHHHHHcCCeeEEEEee----ccc-ccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHH
Q psy5570 682 NGDREMSAMAQVCGFEVWDITVQ----DLL-ENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIA 756 (875)
Q Consensus 682 n~~~e~~~A~~~aG~~v~~V~~~----dl~-~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~ 756 (875)
.........+++.|++.....-. .-. .-+..+.++|.||++=++. +..++..+++...
T Consensus 10 ~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~v-----------------sH~~~~~vk~~ak 72 (97)
T PF10087_consen 10 DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYV-----------------SHNAMWKVKKAAK 72 (97)
T ss_pred ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCc-----------------ChHHHHHHHHHHH
Confidence 33566677888999887654001 100 0144678899999987665 3467778888888
Q ss_pred CCCceEEEEeh
Q psy5570 757 RSDTFSFGVCN 767 (875)
Q Consensus 757 r~g~~vLGICn 767 (875)
+.|+|+.= |+
T Consensus 73 k~~ip~~~-~~ 82 (97)
T PF10087_consen 73 KYGIPIIY-SR 82 (97)
T ss_pred HcCCcEEE-EC
Confidence 77888875 54
No 239
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=35.96 E-value=69 Score=37.51 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCeeEEEEee--c---cccc-ccCccCccEEEEcCCcCccc
Q psy5570 686 EMSAMAQVCGFEVWDITVQ--D---LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~--d---l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
-+...+++.|+++....+- | +... ...++++|.||+.||.|.|+
T Consensus 208 ~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S~G~ 257 (411)
T PRK10680 208 AVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGE 257 (411)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCCCCC
Confidence 3466788899998776542 1 1111 11246799999999999874
No 240
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=34.91 E-value=1.3e+02 Score=33.44 Aligned_cols=77 Identities=16% Similarity=0.190 Sum_probs=45.5
Q ss_pred eEEEEEecCCCCCHHHH----HHHHHHcCCeeEEEEee--c---ccccc-cCc--cCccEEEEcCCcCccccccchhHHH
Q psy5570 671 ISIAVLREEGINGDREM----SAMAQVCGFEVWDITVQ--D---LLENK-ITL--DRFKGLVFPGGFSYADALGSAKGWA 738 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~----~~A~~~aG~~v~~V~~~--d---l~~~~-~~l--~~~d~lvlPGGfS~gD~l~~s~~~a 738 (875)
|||+|+.-+|.....+. ...|++.|+++.+.... . ..... ..+ .++|.+|.-||=.
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------------ 68 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------------ 68 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH------------
Confidence 68999877777544433 44577789888764211 0 00001 112 3689998888632
Q ss_pred HHHhhchhHHHHHHHHHHCCCceEEEEehh
Q psy5570 739 ASLLLNEGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 739 ~ail~~~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
. +.++++ ... .+.|++||=.|
T Consensus 69 -T------lL~a~~-~~~-~~~pi~gIn~G 89 (277)
T PRK03708 69 -T------ILRIEH-KTK-KDIPILGINMG 89 (277)
T ss_pred -H------HHHHHH-hcC-CCCeEEEEeCC
Confidence 2 334555 455 38899998755
No 241
>PRK06703 flavodoxin; Provisional
Probab=33.88 E-value=1.1e+02 Score=30.13 Aligned_cols=50 Identities=10% Similarity=0.146 Sum_probs=34.9
Q ss_pred eEEEEEecCCCCCHHHHHHHHH----HcCCeeEEEEeecccccccCccCccEEEEc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQ----VCGFEVWDITVQDLLENKITLDRFKGLVFP 722 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~----~aG~~v~~V~~~dl~~~~~~l~~~d~lvlP 722 (875)
||+.|+.+-.+++-..++.++. ..|.++.++.+.+.. ..++.++|.|+|.
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~~~l~~~d~viig 55 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD--AEELLAYDGIILG 55 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC--HHHHhcCCcEEEE
Confidence 5788888888888887766554 458887776554322 2357889988883
No 242
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=32.55 E-value=87 Score=32.54 Aligned_cols=61 Identities=16% Similarity=0.155 Sum_probs=37.7
Q ss_pred eEEEEEecCCCCCHHHHHHH----HHH-cCCeeEEEEeecccc------------------cccCccCccEEEEcCCcCc
Q psy5570 671 ISIAVLREEGINGDREMSAM----AQV-CGFEVWDITVQDLLE------------------NKITLDRFKGLVFPGGFSY 727 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A----~~~-aG~~v~~V~~~dl~~------------------~~~~l~~~d~lvlPGGfS~ 727 (875)
|||+|+-.-..++-..++++ +++ .|++++++.+.+... ...++.++|+|||--.-=+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~ 81 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRF 81 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccC
Confidence 47888766656655666544 444 688998887643211 1345778999988665544
Q ss_pred cccc
Q psy5570 728 ADAL 731 (875)
Q Consensus 728 gD~l 731 (875)
|+..
T Consensus 82 g~~~ 85 (200)
T PRK03767 82 GNMA 85 (200)
T ss_pred CCch
Confidence 4444
No 243
>PRK07116 flavodoxin; Provisional
Probab=32.32 E-value=1.4e+02 Score=29.89 Aligned_cols=32 Identities=9% Similarity=0.103 Sum_probs=25.5
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHH-cCCeeEEE
Q psy5570 670 VISIAVLREEGINGDREMSAMAQV-CGFEVWDI 701 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~-aG~~v~~V 701 (875)
.||++|+-|-++++-..++.++.+ .|.+...+
T Consensus 2 m~k~lIvY~S~tGnT~~iA~~Ia~~l~~d~~~i 34 (160)
T PRK07116 2 NNKTLVAYFSATGTTKKVAEKLAEVTGADLFEI 34 (160)
T ss_pred CCcEEEEEECCCCcHHHHHHHHHHHhcCCeEEE
Confidence 478999999999999999998877 47665444
No 244
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=32.20 E-value=60 Score=39.46 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCeeEEEEee--c---cccc-ccCccCccEEEEcCCcCccc
Q psy5570 686 EMSAMAQVCGFEVWDITVQ--D---LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~--d---l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
-+...+++.|+++....+- | +... ...++++|.||+.||.|.|+
T Consensus 210 ~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS~G~ 259 (546)
T PRK14497 210 YLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTSAGE 259 (546)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccCCC
Confidence 4455688899998766542 1 1111 11346799999999999873
No 245
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=31.48 E-value=61 Score=37.57 Aligned_cols=45 Identities=29% Similarity=0.390 Sum_probs=29.8
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
.-+...|++.|+++....+- | +... ...++++|.||..||.|.|+
T Consensus 198 ~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s~g~ 248 (394)
T cd00887 198 YMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVSVGD 248 (394)
T ss_pred HHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCCc
Confidence 34466788899998776542 1 1111 11245699999999999875
No 246
>PRK13337 putative lipid kinase; Reviewed
Probab=30.45 E-value=1.6e+02 Score=32.66 Aligned_cols=53 Identities=13% Similarity=0.219 Sum_probs=34.8
Q ss_pred eEEEEEecCCCCCHH------HHHHHHHHcCCeeEEEEee---c---ccccccCccCccEEEEcCC
Q psy5570 671 ISIAVLREEGINGDR------EMSAMAQVCGFEVWDITVQ---D---LLENKITLDRFKGLVFPGG 724 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~------e~~~A~~~aG~~v~~V~~~---d---l~~~~~~l~~~d~lvlPGG 724 (875)
+|+.+|+-|.++.-. ++..+|+++|+++..+..+ | +.. +...+++|.||+.||
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~-~~~~~~~d~vvv~GG 66 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQAGYETSAHATTGPGDATLAAE-RAVERKFDLVIAAGG 66 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHHcCCEEEEEEecCCCCHHHHHH-HHHhcCCCEEEEEcC
Confidence 478889899888542 4566888999987766543 1 111 111245789998886
No 247
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=29.67 E-value=1.9e+02 Score=28.82 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCeeEEEEee-c----cccc-ccCcc--CccEEEEcCCcCcccc
Q psy5570 686 EMSAMAQVCGFEVWDITVQ-D----LLEN-KITLD--RFKGLVFPGGFSYADA 730 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~--~~d~lvlPGGfS~gD~ 730 (875)
-+...|++.|+++....+- | +.+. ...++ ++|.||..||.|.|+.
T Consensus 24 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~g~~ 76 (152)
T cd00886 24 ALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGLAPR 76 (152)
T ss_pred HHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCC
Confidence 4566789999998776542 1 1111 11133 7999999999997653
No 248
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=28.77 E-value=2.2e+02 Score=34.67 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=51.7
Q ss_pred cceEEEEEecCCCCCH---HHHHHHHHHcCCeeEEEEeeccc----ccccCccCccEEEEcCCc-CccccccchhHHHHH
Q psy5570 669 KVISIAVLREEGINGD---REMSAMAQVCGFEVWDITVQDLL----ENKITLDRFKGLVFPGGF-SYADALGSAKGWAAS 740 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~---~e~~~A~~~aG~~v~~V~~~dl~----~~~~~l~~~d~lvlPGGf-S~gD~l~~s~~~a~a 740 (875)
.+++|+++.-.|--.. ..+..+|+ .++++..+...... .-+.+|+++|+||+.|-- .+
T Consensus 182 ~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~l------------- 247 (552)
T TIGR03521 182 REKRIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEAF------------- 247 (552)
T ss_pred cCceEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCccC-------------
Confidence 5678999987765544 34455666 78888877653111 112234689999999965 32
Q ss_pred HhhchhHHHHHHHHHHCCCceEEE
Q psy5570 741 LLLNEGIKTQLNKFIARSDTFSFG 764 (875)
Q Consensus 741 il~~~~i~~~v~~f~~r~g~~vLG 764 (875)
.+.-...|.+|+.+ |+.+|-
T Consensus 248 ---s~~e~~~Ldqfl~~-GG~ll~ 267 (552)
T TIGR03521 248 ---SEREKYILDQYIMN-GGKALF 267 (552)
T ss_pred ---CHHHHHHHHHHHHc-CCeEEE
Confidence 34567788999996 777665
No 249
>PRK07308 flavodoxin; Validated
Probab=28.59 E-value=2.9e+02 Score=26.96 Aligned_cols=54 Identities=7% Similarity=0.097 Sum_probs=35.1
Q ss_pred EEEEEecCCCCCHHHHHHHH----HHcCCeeEEEEeecccccccCccCccEEEEcCCcCcc
Q psy5570 672 SIAVLREEGINGDREMSAMA----QVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYA 728 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~----~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~g 728 (875)
++.|+-+--+++-..++.++ ++.|.++++....+.. ..++.++|+|+| |-..||
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~--~~~l~~~d~vi~-g~~t~g 60 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVD--ASDFEDADIAIV-ATYTYG 60 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCC--HhHhccCCEEEE-EeCccC
Confidence 56676666667667776544 4568877765544322 234778999988 777776
No 250
>PRK01215 competence damage-inducible protein A; Provisional
Probab=27.55 E-value=1.9e+02 Score=31.93 Aligned_cols=73 Identities=22% Similarity=0.227 Sum_probs=43.5
Q ss_pred HHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccccccchhHHHH-----HHhhchhHHHHHHHH
Q psy5570 686 EMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAA-----SLLLNEGIKTQLNKF 754 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~-----ail~~~~i~~~v~~f 754 (875)
-+...+++.|+++..+..- | +... ..-++.+|.||+.||-+.+.. +-...-+. .+..++.+.+.++++
T Consensus 27 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~d-D~t~eaia~~~g~~l~~~~e~~~~l~~~ 105 (264)
T PRK01215 27 WIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYD-DKTNEGFAKALGVELELNEDALRMILEK 105 (264)
T ss_pred HHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChh-hhHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4567788899998766432 1 1111 112456899999999875322 22222222 334577788888888
Q ss_pred HHCCC
Q psy5570 755 IARSD 759 (875)
Q Consensus 755 ~~r~g 759 (875)
+++.+
T Consensus 106 ~~~~~ 110 (264)
T PRK01215 106 YEKRG 110 (264)
T ss_pred HHhcC
Confidence 77534
No 251
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=27.42 E-value=2.1e+02 Score=32.09 Aligned_cols=78 Identities=15% Similarity=0.056 Sum_probs=44.8
Q ss_pred eEEEEEecCCCCCHHHH----HHHHHHcCCeeEEEEee--ccc----------c--cccCc-cCccEEEEcCCcCccccc
Q psy5570 671 ISIAVLREEGINGDREM----SAMAQVCGFEVWDITVQ--DLL----------E--NKITL-DRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~----~~A~~~aG~~v~~V~~~--dl~----------~--~~~~l-~~~d~lvlPGGfS~gD~l 731 (875)
|+|+|+.-++.....++ ...|++.|.++..-... ++. . ....+ +++|.+|.-||=
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGD------ 74 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGD------ 74 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCc------
Confidence 68898876665444433 44466778877653210 110 0 00122 357888888863
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehh
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
|. +..+.+.+.. .+.|+|||=.|
T Consensus 75 -------GT------~L~aa~~~~~-~~~PilGIN~G 97 (292)
T PRK01911 75 -------GT------FLRTATYVGN-SNIPILGINTG 97 (292)
T ss_pred -------HH------HHHHHHHhcC-CCCCEEEEecC
Confidence 22 3345566665 48999999854
No 252
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=26.92 E-value=95 Score=38.17 Aligned_cols=62 Identities=27% Similarity=0.345 Sum_probs=39.4
Q ss_pred cceEEEEEe------cCCCC---------CHHHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCc
Q psy5570 669 KVISIAVLR------EEGIN---------GDREMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSY 727 (875)
Q Consensus 669 ~~~kVaIlv------~pG~n---------~~~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~ 727 (875)
++|||+|+. .+|.. |-.-+...+++.|+++....+- | +... ...++++|.||..||.|.
T Consensus 366 ~~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s~ 445 (597)
T PRK14491 366 RRPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVSV 445 (597)
T ss_pred cCCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCccC
Confidence 568999984 22321 2334567788999998766542 1 1111 112467999999999998
Q ss_pred ccc
Q psy5570 728 ADA 730 (875)
Q Consensus 728 gD~ 730 (875)
|+.
T Consensus 446 G~~ 448 (597)
T PRK14491 446 GDA 448 (597)
T ss_pred CCc
Confidence 854
No 253
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=25.86 E-value=1e+02 Score=35.38 Aligned_cols=71 Identities=18% Similarity=0.084 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEee------ccccc--ccCccCccEEEEcCCcCccccccchhHHHHHHh
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQ------DLLEN--KITLDRFKGLVFPGGFSYADALGSAKGWAASLL 742 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~------dl~~~--~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail 742 (875)
.|+.|+.++++..-..+...|++.|.++..+... ++... ...-.++|.||--||+|.-|. +|+++.++
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~----aK~ia~~~ 98 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDA----GKAIAALL 98 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHH----HHHHHHHH
Confidence 3788888887763344567888899887665321 01111 111247899999999997663 45566666
Q ss_pred hch
Q psy5570 743 LNE 745 (875)
Q Consensus 743 ~~~ 745 (875)
.++
T Consensus 99 ~~~ 101 (374)
T cd08183 99 PNP 101 (374)
T ss_pred cCC
Confidence 554
No 254
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.22 E-value=2.2e+02 Score=31.89 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=44.9
Q ss_pred eEEEEEecCCCCCHH----HHHHHHHHcCCeeEEEEee--ccc--ccccC-ccCccEEEEcCCcCccccccchhHHHHHH
Q psy5570 671 ISIAVLREEGINGDR----EMSAMAQVCGFEVWDITVQ--DLL--ENKIT-LDRFKGLVFPGGFSYADALGSAKGWAASL 741 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~----e~~~A~~~aG~~v~~V~~~--dl~--~~~~~-l~~~d~lvlPGGfS~gD~l~~s~~~a~ai 741 (875)
+||+++.-||..... ++...|++.|+++...... +.. ..... .+.+|.+|.-||=.
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG--------------- 68 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG--------------- 68 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH---------------
Confidence 368998888754322 3455677789987653211 100 00011 23578888887531
Q ss_pred hhchhHHHHHHHHHHCCCceEEEEeh
Q psy5570 742 LLNEGIKTQLNKFIARSDTFSFGVCN 767 (875)
Q Consensus 742 l~~~~i~~~v~~f~~r~g~~vLGICn 767 (875)
.+.++++.+.. .+.|++||=.
T Consensus 69 ----T~l~~~~~~~~-~~~pv~gin~ 89 (305)
T PRK02645 69 ----TVLAAARHLAP-HDIPILSVNV 89 (305)
T ss_pred ----HHHHHHHHhcc-CCCCEEEEec
Confidence 23345566655 4899999986
No 255
>PRK03673 hypothetical protein; Provisional
Probab=25.16 E-value=2.1e+02 Score=33.44 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=46.4
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccccccchhHHHH-----HHhhchhHHHHHHH
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAA-----SLLLNEGIKTQLNK 753 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~-----ail~~~~i~~~v~~ 753 (875)
.-+...|...|+++..+.+- | +... ...++.+|.||+.||-+.++. +-.+.-++ .+..|+.+.+.|++
T Consensus 24 ~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~d-D~t~~avA~a~g~~L~~d~e~~~~i~~ 102 (396)
T PRK03673 24 AWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSD-DLSALAAATAAGEGLVLHEEWLAEMER 102 (396)
T ss_pred HHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCc-ccHHHHHHHHcCCCceeCHHHHHHHHH
Confidence 34467789999998765442 1 1111 123567999999999876332 11112222 23357889999999
Q ss_pred HHHCCCc
Q psy5570 754 FIARSDT 760 (875)
Q Consensus 754 f~~r~g~ 760 (875)
|+++.+.
T Consensus 103 ~f~~~~~ 109 (396)
T PRK03673 103 FFAERGR 109 (396)
T ss_pred HHHhcCC
Confidence 9876555
No 256
>PLN02929 NADH kinase
Probab=24.92 E-value=1.7e+02 Score=33.09 Aligned_cols=59 Identities=15% Similarity=0.090 Sum_probs=40.5
Q ss_pred HHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEE
Q psy5570 686 EMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGV 765 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGI 765 (875)
.+...|++.|+++..+.-.|+ ...+.++|.+|.-||= |.+| .+.+.+ . .++|++||
T Consensus 38 ~~~~~L~~~gi~~~~v~r~~~---~~~~~~~Dlvi~lGGD-------------GT~L------~aa~~~-~-~~iPvlGI 93 (301)
T PLN02929 38 FCKDILQQKSVDWECVLRNEL---SQPIRDVDLVVAVGGD-------------GTLL------QASHFL-D-DSIPVLGV 93 (301)
T ss_pred HHHHHHHHcCCEEEEeecccc---ccccCCCCEEEEECCc-------------HHHH------HHHHHc-C-CCCcEEEE
Confidence 456788889999966654444 2346789999998863 2333 344445 5 48999999
Q ss_pred ehh
Q psy5570 766 CNG 768 (875)
Q Consensus 766 CnG 768 (875)
=.|
T Consensus 94 N~G 96 (301)
T PLN02929 94 NSD 96 (301)
T ss_pred ECC
Confidence 887
No 257
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=24.67 E-value=2.3e+02 Score=31.59 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=44.8
Q ss_pred EEEEEecCCCCCHH----HHHHHHHHcCCeeEEEEee--ccc------ccccCc-cCccEEEEcCCcCccccccchhHHH
Q psy5570 672 SIAVLREEGINGDR----EMSAMAQVCGFEVWDITVQ--DLL------ENKITL-DRFKGLVFPGGFSYADALGSAKGWA 738 (875)
Q Consensus 672 kVaIlv~pG~n~~~----e~~~A~~~aG~~v~~V~~~--dl~------~~~~~l-~~~d~lvlPGGfS~gD~l~~s~~~a 738 (875)
+|+|+.-++..... .+.+.|++.|+++..-... ++. ....++ +.+|.+|.-||=.
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------------ 74 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG------------ 74 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH------------
Confidence 58888776664333 3355667778876553211 000 000122 3588888888631
Q ss_pred HHHhhchhHHHHHHHHHHCCCceEEEEehh
Q psy5570 739 ASLLLNEGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 739 ~ail~~~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
.+.++++.+.. .+.|+|||=.|
T Consensus 75 -------t~l~~~~~~~~-~~~pilGIn~G 96 (291)
T PRK02155 75 -------TMLGIGRQLAP-YGVPLIGINHG 96 (291)
T ss_pred -------HHHHHHHHhcC-CCCCEEEEcCC
Confidence 24456676665 48999999855
No 258
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.50 E-value=96 Score=34.29 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=35.9
Q ss_pred cceEEEEEecCCCCCHH------HHHHHHHHcCCeeEEEEee---c---ccccccCccCccEEEEcCC
Q psy5570 669 KVISIAVLREEGINGDR------EMSAMAQVCGFEVWDITVQ---D---LLENKITLDRFKGLVFPGG 724 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~------e~~~A~~~aG~~v~~V~~~---d---l~~~~~~l~~~d~lvlPGG 724 (875)
+.+|+.+|+-|-++.-. ++..+|++.|+++..+..+ | +.. +...+++|.||+.||
T Consensus 7 ~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~-~~~~~~~d~vvv~GG 73 (306)
T PRK11914 7 EIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTDAHDARHLVA-AALAKGTDALVVVGG 73 (306)
T ss_pred CCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHH-HHHhcCCCEEEEECC
Confidence 34589999999887532 4677888899987765443 1 111 111356788888886
No 259
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=23.77 E-value=94 Score=34.14 Aligned_cols=50 Identities=26% Similarity=0.417 Sum_probs=32.9
Q ss_pred eEEEEEecCCCCCHHHH--------HHHHHHcCCeeEEEEee-cccccccCccCccEEEE
Q psy5570 671 ISIAVLREEGINGDREM--------SAMAQVCGFEVWDITVQ-DLLENKITLDRFKGLVF 721 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~--------~~A~~~aG~~v~~V~~~-dl~~~~~~l~~~d~lvl 721 (875)
|||+|+ +=|...++++ .+||++.|+++..+... ++......+.++|.++.
T Consensus 1 ~~v~v~-~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~ 59 (299)
T PRK14571 1 MRVALL-MGGVSREREISLRSGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFN 59 (299)
T ss_pred CeEEEE-eCCCCCCccchHHHHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEE
Confidence 588987 7788878654 77899999999888543 22211123456775543
No 260
>PRK13055 putative lipid kinase; Reviewed
Probab=23.60 E-value=2.5e+02 Score=31.63 Aligned_cols=53 Identities=9% Similarity=0.191 Sum_probs=34.2
Q ss_pred eEEEEEecCCCCCHH------HHHHHHHHcCCeeEEEEee----c---ccccccCccCccEEEEcCC
Q psy5570 671 ISIAVLREEGINGDR------EMSAMAQVCGFEVWDITVQ----D---LLENKITLDRFKGLVFPGG 724 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~------e~~~A~~~aG~~v~~V~~~----d---l~~~~~~l~~~d~lvlPGG 724 (875)
+|+.+|+-|.++.-. ++...|++.|+++.+...+ + +.. ....+++|.||+.||
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~-~~~~~~~d~vvv~GG 68 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPNSAKNEAK-RAAEAGFDLIIAAGG 68 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCccHHHHHH-HHhhcCCCEEEEECC
Confidence 478899999988643 4466788899887754322 1 111 112246789998886
No 261
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.82 E-value=1.2e+02 Score=29.68 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=23.2
Q ss_pred ccceEEEEEecCCCCCH-HHHHHHHHHcCCeeEEEEe
Q psy5570 668 KKVISIAVLREEGINGD-REMSAMAQVCGFEVWDITV 703 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~-~e~~~A~~~aG~~v~~V~~ 703 (875)
..++||+|| |.+.- ..+..+|+++|+.+.-|.-
T Consensus 8 ~~~l~I~iI---GaGrVG~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 8 AARLKIGII---GAGRVGTALARALARAGHEVVGVYS 41 (127)
T ss_dssp ----EEEEE---CTSCCCCHHHHHHHHTTSEEEEESS
T ss_pred CCccEEEEE---CCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 367899999 55555 5678999999999877754
No 262
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=22.42 E-value=1.1e+02 Score=37.61 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCcccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYADA 730 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD~ 730 (875)
.-+...+++.|+++....+- | +... ...++++|.||+.||.|.|+.
T Consensus 216 ~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s~g~~ 267 (633)
T PRK14498 216 YTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTSAGAG 267 (633)
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCcCCCc
Confidence 34566789999988765432 1 1111 112357999999999987643
No 263
>PRK09267 flavodoxin FldA; Validated
Probab=22.34 E-value=2.3e+02 Score=28.39 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=35.7
Q ss_pred eEEEEEecCCCCCHHHHHHHHHH-cC-CeeEEEEeecccccccCccCccEEEEcCCc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQV-CG-FEVWDITVQDLLENKITLDRFKGLVFPGGF 725 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~-aG-~~v~~V~~~dl~~~~~~l~~~d~lvlPGGf 725 (875)
|||+|+-+-.+++-..++.++.+ .+ .++.++.+.+.. ..++.++|+|||....
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~~~~~~~~~~~~~--~~~l~~~d~vi~g~pt 56 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGKDVADVVDIAKAS--KEDFEAYDLLILGIPT 56 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCCCceEEEEhhhCC--HhhHhhCCEEEEEecC
Confidence 58999888888988888887766 33 244444433221 2457889998876544
No 264
>PRK12359 flavodoxin FldB; Provisional
Probab=21.85 E-value=2.5e+02 Score=29.02 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=34.8
Q ss_pred eEEEEEecCCCCCHHHHHHHHHH-cCCe-eEEEEeecccccccCccCccEEEEc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQV-CGFE-VWDITVQDLLENKITLDRFKGLVFP 722 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~-aG~~-v~~V~~~dl~~~~~~l~~~d~lvlP 722 (875)
||++|+-+-.++|-..++.++.+ .|.+ ++++.+.+. ...++.+||.|||-
T Consensus 1 Mki~I~Y~S~TGNTe~vAe~I~~~lg~~~v~v~~i~~~--~~~~l~~yD~iIlG 52 (172)
T PRK12359 1 MKIGLFYGSSTCYTEMAAEKIRDIIGEELVDLHNLKDD--PPKLMEQYDVLILG 52 (172)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhCCCeEEEEEcccC--ChhHHccCCEEEEE
Confidence 68999988899999999998877 5754 334333321 23357789977763
No 265
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=21.20 E-value=2.2e+02 Score=31.46 Aligned_cols=33 Identities=21% Similarity=0.232 Sum_probs=26.4
Q ss_pred ceEEEEEecCCCCCHHHH--------HHHHHHcCCeeEEEEe
Q psy5570 670 VISIAVLREEGINGDREM--------SAMAQVCGFEVWDITV 703 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~--------~~A~~~aG~~v~~V~~ 703 (875)
++||+|+ +=|...+++. ..||++.|+++..+..
T Consensus 3 ~~~i~vl-~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 3 NEKIVVL-YGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CcEEEEE-eCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 5689998 6788888765 7799999999987743
No 266
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=21.09 E-value=3.3e+02 Score=30.78 Aligned_cols=77 Identities=19% Similarity=0.197 Sum_probs=44.9
Q ss_pred EEEEEecCCCCCHHHH----HHHHHHcCCeeEEEEee--cccc--------------c-ccCc-cCccEEEEcCCcCccc
Q psy5570 672 SIAVLREEGINGDREM----SAMAQVCGFEVWDITVQ--DLLE--------------N-KITL-DRFKGLVFPGGFSYAD 729 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~----~~A~~~aG~~v~~V~~~--dl~~--------------~-~~~l-~~~d~lvlPGGfS~gD 729 (875)
+|+|+.-++.....++ ...|++.|+++.+.... ++.. . ...+ +++|.+|.-||=
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGD---- 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLVLGGD---- 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEEEcCC----
Confidence 6999877666443333 44566778887764321 1110 0 0122 357888888853
Q ss_pred cccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehh
Q psy5570 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 730 ~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
|. +..+.+.+.. .+.|+|||=.|
T Consensus 83 ---------GT------~L~aar~~~~-~~~PilGIN~G 105 (306)
T PRK03372 83 ---------GT------ILRAAELARA-ADVPVLGVNLG 105 (306)
T ss_pred ---------HH------HHHHHHHhcc-CCCcEEEEecC
Confidence 22 3345666666 48999999854
No 267
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=20.56 E-value=1.5e+02 Score=37.00 Aligned_cols=45 Identities=24% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHHHHcCCeeEEEEee--c---cccc-ccCc-cCccEEEEcCCcCcccc
Q psy5570 686 EMSAMAQVCGFEVWDITVQ--D---LLEN-KITL-DRFKGLVFPGGFSYADA 730 (875)
Q Consensus 686 e~~~A~~~aG~~v~~V~~~--d---l~~~-~~~l-~~~d~lvlPGGfS~gD~ 730 (875)
-+...+++.|+++..+.+- | +... ...+ .++|+||+.||.|.||.
T Consensus 213 ~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts~G~~ 264 (659)
T PLN02699 213 MLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVSMGDR 264 (659)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCCCCCC
Confidence 4566788899998876542 1 1111 1123 36999999999999754
No 268
>PLN02204 diacylglycerol kinase
Probab=20.55 E-value=1.4e+02 Score=36.71 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=37.6
Q ss_pred ceEEEEEecCCCCCH------HHHHHHHHHcCCeeEEEEee------ccccc--ccCccCccEEEEcCC
Q psy5570 670 VISIAVLREEGINGD------REMSAMAQVCGFEVWDITVQ------DLLEN--KITLDRFKGLVFPGG 724 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~------~e~~~A~~~aG~~v~~V~~~------dl~~~--~~~l~~~d~lvlPGG 724 (875)
.+++.|++-|-++.- ..++..|+++|.++.++..+ |+... +..++.||+||..||
T Consensus 159 ~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~~l~~~D~VVaVGG 227 (601)
T PLN02204 159 PKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNKELKSYDGVIAVGG 227 (601)
T ss_pred CceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhhhccCCCEEEEEcC
Confidence 346788888866532 14567889999998776554 33332 223678999999998
No 269
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=20.35 E-value=3.7e+02 Score=29.84 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=25.2
Q ss_pred cceEEEEEecCCCCCHHHH-HHHHHHcCCeeEEEEee
Q psy5570 669 KVISIAVLREEGINGDREM-SAMAQVCGFEVWDITVQ 704 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~-~~A~~~aG~~v~~V~~~ 704 (875)
.+|||+|+ |.+.-..+ +.+|.++|.+|..+...
T Consensus 4 ~~m~I~Ii---G~GaiG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 4 ETPRIGII---GTGAIGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred cCcEEEEE---CCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 45799988 88876654 66788899999887653
No 270
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=20.31 E-value=63 Score=32.67 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=33.8
Q ss_pred ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCC
Q psy5570 710 KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778 (875)
Q Consensus 710 ~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlL 778 (875)
..+++ .|.|||=||-+.+..--. -+.+.+.+.+... +-+.|||. |.++-++||.
T Consensus 76 ~~~~~-~D~vVlmGGLAMP~~~v~----------~e~v~~li~ki~~---~~iiGiCF-ms~F~kagW~ 129 (147)
T PF09897_consen 76 KKDPH-PDVVVLMGGLAMPKSGVT----------PEDVNELIKKISP---KKIIGICF-MSMFEKAGWD 129 (147)
T ss_dssp E--S--EEEEEEEGGGGSTTTS------------HHHHHHHHHHHEE---EEEEEEEE-TTHHHHTTHH
T ss_pred cCCCC-CCEEEEEcccccCCCCCC----------HHHHHHHHHHhCc---CCEEEEeh-HHHHHHcCCc
Confidence 34566 999999999998766533 3456666666543 33999993 2334478874
Done!