Query psy5570
Match_columns 875
No_of_seqs 500 out of 3408
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 20:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5570.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5570hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugj_A Phosphoribosylformylgly 100.0 2.6E-93 8.8E-98 887.4 36.2 612 1-834 559-1229(1303)
2 3ac6_A Phosphoribosylformylgly 100.0 5.5E-41 1.9E-45 403.0 18.8 389 1-603 308-723 (725)
3 1vk3_A Phosphoribosylformylgly 100.0 1.2E-30 4.1E-35 308.0 3.7 188 1-233 297-497 (615)
4 1vq8_Q 50S ribosomal protein L 99.8 2.9E-20 9.9E-25 167.9 2.7 68 358-425 1-70 (96)
5 3j21_R 50S ribosomal protein L 99.8 3.6E-20 1.2E-24 167.7 2.4 68 358-425 2-71 (97)
6 3jyw_Q 60S ribosomal protein L 99.8 1.7E-19 5.9E-24 167.3 2.6 67 359-425 1-69 (116)
7 2zkr_q 60S ribosomal protein L 99.7 7.9E-19 2.7E-23 171.5 2.5 69 358-426 1-71 (160)
8 3iz5_U 60S ribosomal protein L 99.7 1E-18 3.4E-23 171.2 1.7 68 358-425 1-70 (164)
9 3izc_U 60S ribosomal protein R 99.7 1.1E-18 3.7E-23 170.5 1.9 66 358-423 1-67 (160)
10 4a17_P RPL21, 60S ribosomal pr 99.7 1.1E-18 3.6E-23 170.1 1.3 66 358-423 1-67 (157)
11 4hcj_A THIJ/PFPI domain protei 99.5 4.6E-14 1.6E-18 142.1 12.2 132 669-814 7-162 (177)
12 3jyw_Q 60S ribosomal protein L 99.5 9.5E-15 3.3E-19 135.6 3.6 70 237-306 31-104 (116)
13 1vk3_A Phosphoribosylformylgly 99.5 3.6E-14 1.2E-18 167.7 7.7 282 117-598 63-356 (615)
14 3d54_D Phosphoribosylformylgly 99.4 2.3E-13 7.8E-18 138.8 8.3 115 671-800 3-117 (213)
15 3ugj_A Phosphoribosylformylgly 99.4 1.7E-15 5.7E-20 190.1 -9.2 189 457-684 139-356 (1303)
16 2zkr_q 60S ribosomal protein L 99.4 1.2E-13 4.1E-18 135.1 3.7 75 237-311 32-110 (160)
17 3iz5_U 60S ribosomal protein L 99.4 6.9E-14 2.4E-18 137.1 0.9 73 237-309 32-108 (164)
18 4a17_P RPL21, 60S ribosomal pr 99.4 6.8E-14 2.3E-18 136.5 0.4 74 237-310 32-109 (157)
19 3l18_A Intracellular protease 99.4 2.5E-12 8.5E-17 126.7 11.7 130 670-813 2-155 (168)
20 3izc_U 60S ribosomal protein R 99.4 7.8E-14 2.7E-18 136.4 0.8 74 237-310 32-109 (160)
21 4gdh_A DJ-1, uncharacterized p 99.4 1.1E-12 3.6E-17 133.5 8.8 133 669-814 3-167 (194)
22 4gud_A Imidazole glycerol phos 99.3 2.4E-13 8.4E-18 138.9 3.7 85 672-775 4-88 (211)
23 2yxz_A Thiamin-monophosphate k 99.3 4.1E-12 1.4E-16 137.9 10.2 95 116-229 28-126 (311)
24 3ac6_A Phosphoribosylformylgly 99.3 1.2E-11 4.2E-16 148.8 13.2 283 117-593 66-362 (725)
25 1oi4_A Hypothetical protein YH 99.3 2.6E-11 8.9E-16 122.8 13.1 135 668-814 21-180 (193)
26 2vrn_A Protease I, DR1199; cys 99.2 3.5E-11 1.2E-15 120.8 9.8 133 669-814 8-169 (190)
27 3l3b_A ES1 family protein; ssg 99.2 5.5E-11 1.9E-15 125.3 11.7 141 671-814 24-218 (242)
28 1vq8_Q 50S ribosomal protein L 99.2 8.6E-12 2.9E-16 112.8 3.4 65 237-301 32-96 (96)
29 4e08_A DJ-1 beta; flavodoxin-l 99.2 1.6E-10 5.3E-15 116.4 13.0 131 671-814 6-161 (190)
30 2z1e_A Hydrogenase expression/ 99.1 2.4E-11 8.1E-16 133.3 5.8 104 91-227 23-133 (338)
31 2ab0_A YAJL; DJ-1/THIJ superfa 99.1 1.7E-10 5.8E-15 117.9 11.2 131 671-814 3-161 (205)
32 2rk3_A Protein DJ-1; parkinson 99.1 2E-10 6.7E-15 116.3 11.5 131 671-814 4-161 (197)
33 3cne_A Putative protease I; st 99.1 2.9E-10 9.8E-15 112.8 11.6 130 671-813 3-162 (175)
34 1gpw_B Amidotransferase HISH; 99.1 6.5E-11 2.2E-15 120.1 6.9 88 671-775 1-93 (201)
35 3ot1_A 4-methyl-5(B-hydroxyeth 99.1 2.7E-10 9.2E-15 116.7 11.3 132 671-814 10-166 (208)
36 1ka9_H Imidazole glycerol phos 99.1 9.8E-11 3.4E-15 119.0 7.4 89 671-775 3-91 (200)
37 3fd5_A Selenide, water dikinas 99.1 8.5E-11 2.9E-15 132.1 7.1 94 116-225 68-164 (394)
38 2z01_A Phosphoribosylformylgly 99.1 8E-11 2.7E-15 129.9 6.8 94 117-228 41-142 (348)
39 3n7t_A Macrophage binding prot 99.0 6.4E-10 2.2E-14 117.5 11.7 131 671-814 10-230 (247)
40 1u9c_A APC35852; structural ge 99.0 9.2E-10 3.1E-14 113.4 10.8 131 671-814 6-209 (224)
41 3uk7_A Class I glutamine amido 99.0 7.4E-10 2.5E-14 123.8 10.8 132 669-814 204-379 (396)
42 3f5d_A Protein YDEA; unknow pr 99.0 1.7E-09 5.7E-14 111.2 12.4 126 671-812 4-155 (206)
43 3kkl_A Probable chaperone prot 99.0 8.6E-10 2.9E-14 116.3 10.5 115 688-814 35-224 (244)
44 3j21_R 50S ribosomal protein L 99.0 1.5E-10 5.2E-15 105.0 3.4 65 237-301 33-97 (97)
45 2fex_A Conserved hypothetical 99.0 1.9E-09 6.4E-14 108.4 11.7 128 671-812 2-157 (188)
46 1q7r_A Predicted amidotransfer 99.0 5.9E-10 2E-14 115.1 8.1 89 669-775 22-110 (219)
47 3uk7_A Class I glutamine amido 99.0 1.1E-09 3.7E-14 122.5 10.7 115 670-797 12-166 (396)
48 3fse_A Two-domain protein cont 99.0 1.5E-09 5.1E-14 120.8 11.6 132 669-814 9-166 (365)
49 2ywd_A Glutamine amidotransfer 99.0 1.3E-09 4.3E-14 109.4 9.5 88 670-775 2-90 (191)
50 3mcq_A Thiamine-monophosphate 99.0 4.3E-10 1.5E-14 122.8 6.6 91 117-227 25-120 (319)
51 3vti_C Hydrogenase maturation 99.0 1.4E-10 4.8E-15 126.2 2.5 88 116-227 19-109 (314)
52 2iss_D Glutamine amidotransfer 99.0 9.7E-10 3.3E-14 112.5 8.5 91 667-775 17-107 (208)
53 2btu_A Phosphoribosyl-aminoimi 99.0 7.9E-10 2.7E-14 121.9 8.1 94 117-228 39-140 (346)
54 3gra_A Transcriptional regulat 98.9 2.4E-09 8.3E-14 109.3 10.7 128 670-813 5-163 (202)
55 3mgk_A Intracellular protease/ 98.9 2.7E-09 9.1E-14 109.8 10.9 132 669-814 3-161 (211)
56 3noq_A THIJ/PFPI family protei 98.9 4.6E-09 1.6E-13 109.6 12.5 129 671-813 6-157 (231)
57 3kgb_A Thymidylate synthase 1/ 98.9 4.6E-10 1.6E-14 120.4 4.6 50 304-353 174-223 (294)
58 3ewn_A THIJ/PFPI family protei 98.9 4.6E-09 1.6E-13 111.3 12.1 129 671-814 24-178 (253)
59 3efe_A THIJ/PFPI family protei 98.9 7E-09 2.4E-13 106.6 13.0 127 671-811 6-167 (212)
60 2aaz_A TS, tsase, thymidylate 98.9 5.2E-10 1.8E-14 121.2 4.6 50 304-353 187-245 (317)
61 1rw7_A YDR533CP; alpha-beta sa 98.9 3.4E-09 1.2E-13 111.2 10.5 130 671-813 4-223 (243)
62 1f28_A Thymidylate synthase; b 98.9 5.6E-10 1.9E-14 120.2 4.6 50 304-353 173-228 (297)
63 1j3k_C Bifunctional dihydrofol 98.9 6E-10 2.1E-14 121.0 4.7 50 304-353 210-259 (328)
64 3ed7_A Tsase, TS, thymidylate 98.9 5.6E-10 1.9E-14 119.7 4.3 50 304-353 177-226 (295)
65 3qj7_A TS, tsase, thymidylate 98.9 6.7E-10 2.3E-14 117.6 4.8 50 304-353 147-196 (264)
66 1hw4_A TS, thymidylate synthas 98.9 5.9E-10 2E-14 121.8 4.4 50 304-353 237-286 (355)
67 3u0o_A Selenide, water dikinas 98.9 1E-09 3.4E-14 121.4 6.3 96 110-227 44-141 (347)
68 3er6_A Putative transcriptiona 98.9 4.9E-09 1.7E-13 107.6 10.9 134 669-814 7-172 (209)
69 2yyd_A Selenide, water dikinas 98.9 3.9E-10 1.3E-14 124.6 2.8 88 117-226 51-141 (345)
70 2g8o_A TS, tsase, thymidylate 98.9 8.1E-10 2.8E-14 117.4 4.6 50 304-353 146-195 (264)
71 1tis_A Thymidylate synthase; t 98.9 9.9E-10 3.4E-14 117.6 4.7 50 304-353 156-205 (286)
72 1bkp_A Thymidylate synthase A; 98.8 1.3E-09 4.3E-14 116.6 4.8 50 304-353 160-209 (278)
73 4dq1_A TS, tsase, thymidylate 98.8 1.2E-09 4.1E-14 118.1 4.6 50 304-353 204-253 (321)
74 3uwl_A TS, tsase, thymidylate 98.8 1.2E-09 4.2E-14 118.7 4.6 50 304-353 197-246 (315)
75 2nv0_A Glutamine amidotransfer 98.8 2.8E-09 9.7E-14 107.6 6.5 86 671-774 2-87 (196)
76 3v8h_A TS, tsase, thymidylate 98.8 1.5E-09 5E-14 117.9 4.2 50 304-353 196-247 (327)
77 3ix6_A TS, tsase, thymidylate 98.8 1.9E-09 6.3E-14 118.9 4.8 50 304-353 242-291 (360)
78 2abw_A PDX2 protein, glutamina 98.8 3.9E-09 1.3E-13 109.2 6.8 89 669-775 2-96 (227)
79 3bhn_A THIJ/PFPI domain protei 98.8 7.7E-09 2.6E-13 108.5 8.3 130 668-814 18-173 (236)
80 3nrr_A Dihydrofolate reductase 98.8 2.3E-09 8E-14 123.3 4.6 50 304-353 397-446 (515)
81 2a9v_A GMP synthase; structura 98.8 5.8E-09 2E-13 107.4 7.1 91 670-781 13-105 (212)
82 3l7n_A Putative uncharacterize 98.8 2.1E-08 7.2E-13 104.7 11.4 104 671-781 1-104 (236)
83 1vhq_A Enhancing lycopene bios 98.8 1.5E-08 5.2E-13 105.4 10.0 135 671-809 7-195 (232)
84 2rb9_A HYPE protein; hydrogena 98.8 4.7E-10 1.6E-14 123.2 -1.5 95 116-228 32-131 (334)
85 3irm_A Bifunctional dihydrofol 98.8 2.7E-09 9.2E-14 122.9 4.6 50 304-353 403-452 (521)
86 3m3p_A Glutamine amido transfe 98.8 1.6E-08 5.6E-13 107.0 10.0 99 670-781 3-102 (250)
87 3hj3_A Chain A, crystal struct 98.8 3.5E-09 1.2E-13 122.0 5.1 50 304-353 402-452 (521)
88 1wl8_A GMP synthase [glutamine 98.8 8.5E-09 2.9E-13 103.6 7.3 90 671-781 1-92 (189)
89 3fij_A LIN1909 protein; 11172J 98.8 1.1E-08 3.7E-13 108.2 8.3 104 670-775 4-124 (254)
90 2v4u_A CTP synthase 2; pyrimid 98.7 5.5E-09 1.9E-13 112.7 5.8 91 669-774 24-134 (289)
91 2ywj_A Glutamine amidotransfer 98.7 1.8E-08 6.2E-13 100.9 8.5 84 671-775 1-84 (186)
92 1n57_A Chaperone HSP31, protei 98.7 4.7E-08 1.6E-12 105.5 12.2 131 671-814 49-266 (291)
93 3uow_A GMP synthetase; structu 98.7 1.6E-08 5.6E-13 118.2 9.2 92 670-775 7-99 (556)
94 1b5e_A Protein (deoxycytidylat 98.7 4.8E-09 1.7E-13 110.7 4.1 50 304-353 148-204 (246)
95 3ej6_A Catalase-3; heme, hydro 98.7 3.7E-08 1.3E-12 116.5 11.9 99 669-779 536-650 (688)
96 2w7t_A CTP synthetase, putativ 98.7 1.3E-08 4.3E-13 109.0 7.2 89 671-774 9-111 (273)
97 3qg2_A Bifunctional dihydrofol 98.7 5.5E-09 1.9E-13 121.5 4.6 50 304-353 490-539 (608)
98 1o1y_A Conserved hypothetical 98.7 2.7E-08 9.3E-13 104.2 9.4 99 671-781 13-113 (239)
99 2zod_A Selenide, water dikinas 98.7 9.9E-09 3.4E-13 113.0 6.2 90 117-225 51-140 (345)
100 3ttv_A Catalase HPII; heme ori 98.7 3.6E-08 1.2E-12 117.3 11.2 96 669-778 599-711 (753)
101 1qdl_B Protein (anthranilate s 98.7 2.3E-08 8E-13 101.2 7.4 93 671-781 1-97 (195)
102 1jvn_A Glutamine, bifunctional 98.7 1.4E-08 4.7E-13 118.9 6.3 92 670-775 4-95 (555)
103 2z1u_A Hydrogenase expression/ 98.6 5.9E-09 2E-13 114.8 1.7 89 116-228 38-131 (343)
104 1l9x_A Gamma-glutamyl hydrolas 98.6 4.9E-08 1.7E-12 106.5 6.9 100 669-775 29-140 (315)
105 2vpi_A GMP synthase; guanine m 98.5 2.3E-08 8E-13 103.5 1.6 92 671-781 25-116 (218)
106 1sy7_A Catalase 1; heme oxidat 98.5 2.9E-07 1E-11 110.0 11.0 121 669-812 533-671 (715)
107 2iuf_A Catalase; oxidoreductas 98.5 2.5E-07 8.7E-12 109.6 10.3 100 669-779 528-652 (688)
108 1fy2_A Aspartyl dipeptidase; s 98.5 3.9E-08 1.3E-12 102.6 2.9 95 669-777 30-131 (229)
109 3tqi_A GMP synthase [glutamine 98.5 1.6E-07 5.6E-12 109.2 8.0 106 671-800 11-118 (527)
110 3m84_A Phosphoribosylformylgly 98.5 3.5E-07 1.2E-11 101.2 9.8 92 116-225 42-143 (350)
111 1i1q_B Anthranilate synthase c 98.4 2.9E-07 9.9E-12 92.8 8.2 86 671-776 1-93 (192)
112 3l4e_A Uncharacterized peptida 98.4 8.1E-08 2.8E-12 98.9 3.8 92 671-775 28-129 (206)
113 1a9x_B Carbamoyl phosphate syn 98.4 3.4E-07 1.2E-11 102.3 8.3 88 670-775 190-277 (379)
114 3p4e_A Phosphoribosylformylgly 98.4 2.8E-07 9.4E-12 102.0 7.1 91 117-225 47-144 (349)
115 3r75_A Anthranilate/para-amino 98.3 1.3E-06 4.4E-11 103.9 10.9 93 669-775 445-537 (645)
116 2v9y_A Phosphoribosylformylgly 98.3 9.1E-07 3.1E-11 97.2 7.3 89 450-564 214-308 (334)
117 1gpm_A GMP synthetase, XMP ami 98.3 4.4E-07 1.5E-11 105.5 5.0 87 670-775 7-95 (525)
118 3nva_A CTP synthase; rossman f 98.2 3.2E-06 1.1E-10 97.4 10.1 91 669-774 292-394 (535)
119 2ywb_A GMP synthase [glutamine 98.1 1.6E-06 5.5E-11 100.3 4.7 84 673-775 2-87 (503)
120 1vco_A CTP synthetase; tetrame 98.0 7.5E-06 2.6E-10 95.4 7.2 76 685-775 317-400 (550)
121 2vxo_A GMP synthase [glutamine 97.9 4.7E-06 1.6E-10 99.9 3.4 95 669-782 28-122 (697)
122 3c9u_A Thiamine monophosphate 97.8 1.1E-05 3.6E-10 89.1 5.1 93 117-228 61-157 (342)
123 1s1m_A CTP synthase; CTP synth 97.8 1.8E-05 6.2E-10 92.1 6.8 76 684-774 305-387 (545)
124 2h2w_A Homoserine O-succinyltr 95.5 0.032 1.1E-06 60.8 8.8 97 668-774 45-162 (312)
125 2vdj_A Homoserine O-succinyltr 95.2 0.034 1.2E-06 60.2 8.1 98 667-774 32-150 (301)
126 3en0_A Cyanophycinase; serine 93.6 0.088 3E-06 56.8 6.7 102 668-780 54-166 (291)
127 3rht_A (gatase1)-like protein; 84.6 1.9 6.3E-05 45.7 7.7 78 671-765 5-85 (259)
128 2zuv_A Lacto-N-biose phosphory 84.6 1.2 4E-05 52.9 6.6 67 687-766 473-543 (759)
129 4e5v_A Putative THUA-like prot 83.8 4 0.00014 43.5 9.9 80 669-768 3-95 (281)
130 2gk3_A Putative cytoplasmic pr 77.7 2.7 9.3E-05 43.9 5.9 78 684-765 42-124 (256)
131 1t0b_A THUA-like protein; treh 77.5 3.9 0.00013 42.8 7.1 67 688-768 38-106 (252)
132 3rfq_A Pterin-4-alpha-carbinol 73.0 7.3 0.00025 39.1 7.4 61 669-730 29-104 (185)
133 2pjk_A 178AA long hypothetical 72.7 12 0.00043 37.0 9.0 62 669-730 14-96 (178)
134 1z0s_A Probable inorganic poly 57.8 11 0.00038 40.1 5.6 78 669-778 28-105 (278)
135 3soz_A ORF 245 protein, cytopl 49.8 11 0.00038 39.5 3.8 80 684-766 35-118 (248)
136 3iwt_A 178AA long hypothetical 48.9 23 0.00079 34.5 5.9 62 669-730 14-96 (178)
137 3f6r_A Flavodoxin; FMN binding 45.8 48 0.0017 30.6 7.4 55 671-728 2-61 (148)
138 3tty_A Beta-GAL, beta-galactos 44.7 32 0.0011 41.0 7.2 62 685-768 428-489 (675)
139 1f4p_A Flavodoxin; electron tr 44.3 54 0.0019 30.1 7.4 50 671-722 1-55 (147)
140 2ark_A Flavodoxin; FMN, struct 40.0 36 0.0012 33.1 5.7 60 670-731 4-68 (188)
141 3hly_A Flavodoxin-like domain; 39.6 28 0.00097 33.2 4.8 54 671-724 1-60 (161)
142 1uuy_A CNX1, molybdopterin bio 38.5 29 0.001 33.7 4.7 61 669-729 4-85 (167)
143 3kbq_A Protein TA0487; structu 37.7 28 0.00097 34.4 4.4 87 670-756 3-107 (172)
144 3fni_A Putative diflavin flavo 37.4 57 0.0019 31.1 6.5 55 670-724 4-65 (159)
145 2zki_A 199AA long hypothetical 36.5 34 0.0012 33.2 4.9 54 670-724 4-79 (199)
146 1wu2_A MOEA protein, molybdopt 36.0 17 0.00057 40.7 2.7 45 685-729 214-264 (396)
147 2a5l_A Trp repressor binding p 35.9 52 0.0018 31.8 6.1 59 671-729 6-85 (200)
148 4ici_A Putative flavoprotein; 35.6 61 0.0021 31.4 6.5 85 669-767 12-125 (171)
149 3edo_A Flavoprotein, putative 35.3 62 0.0021 30.4 6.3 59 671-729 4-90 (151)
150 3nbm_A PTS system, lactose-spe 33.8 1.2E+02 0.0043 27.4 7.8 79 668-766 4-85 (108)
151 1ykg_A SIR-FP, sulfite reducta 33.1 60 0.002 31.0 5.9 63 669-733 8-75 (167)
152 2r47_A Uncharacterized protein 32.6 20 0.00068 35.1 2.3 53 714-778 83-135 (157)
153 2fts_A Gephyrin; gephyrin, neu 32.1 23 0.0008 39.7 3.2 45 685-729 211-261 (419)
154 3klb_A Putative flavoprotein; 31.7 67 0.0023 30.6 6.0 82 671-766 5-115 (162)
155 1y5e_A Molybdenum cofactor bio 31.5 40 0.0014 32.8 4.4 60 669-729 12-86 (169)
156 1jr2_A Uroporphyrinogen-III sy 30.5 50 0.0017 34.4 5.2 100 670-779 21-135 (286)
157 1bvy_F Protein (cytochrome P45 30.0 85 0.0029 31.1 6.6 66 669-737 20-89 (191)
158 3r5x_A D-alanine--D-alanine li 29.5 22 0.00076 37.0 2.3 53 669-722 2-62 (307)
159 1g8l_A Molybdopterin biosynthe 29.5 37 0.0013 38.0 4.2 45 685-729 207-257 (411)
160 3b6i_A Flavoprotein WRBA; flav 27.7 75 0.0026 30.5 5.6 61 671-731 2-84 (198)
161 4eg0_A D-alanine--D-alanine li 26.3 63 0.0022 33.9 5.2 59 669-728 12-78 (317)
162 1u0t_A Inorganic polyphosphate 26.0 97 0.0033 32.9 6.6 78 671-768 5-108 (307)
163 2fz5_A Flavodoxin; alpha/beta 26.0 1.7E+02 0.0057 26.1 7.3 50 673-724 2-55 (137)
164 1ag9_A Flavodoxin; electron tr 25.1 81 0.0028 30.2 5.3 59 671-731 1-62 (175)
165 5nul_A Flavodoxin; electron tr 24.8 1.4E+02 0.0049 26.9 6.7 48 674-723 2-53 (138)
166 2q9u_A A-type flavoprotein; fl 24.7 1.2E+02 0.004 33.0 7.1 86 670-768 256-350 (414)
167 1uz5_A MOEA protein, 402AA lon 24.4 43 0.0015 37.4 3.5 45 685-729 210-260 (402)
168 1mkz_A Molybdenum cofactor bio 24.2 47 0.0016 32.5 3.4 60 669-729 9-83 (172)
169 2i2c_A Probable inorganic poly 23.2 73 0.0025 33.2 4.9 65 671-767 1-69 (272)
170 1ydg_A Trp repressor binding p 22.9 62 0.0021 31.7 4.1 56 669-724 5-87 (211)
171 2an1_A Putative kinase; struct 22.5 87 0.003 32.7 5.3 76 671-766 6-94 (292)
172 1jlj_A Gephyrin; globular alph 22.4 55 0.0019 32.6 3.5 61 669-729 13-92 (189)
173 3pzy_A MOG; ssgcid, seattle st 22.3 37 0.0013 33.0 2.2 60 669-729 6-80 (164)
174 3qbe_A 3-dehydroquinate syntha 22.1 1E+02 0.0035 34.0 5.9 78 671-766 44-136 (368)
175 2is8_A Molybdopterin biosynthe 22.0 33 0.0011 33.2 1.7 59 671-729 2-76 (164)
176 3c9u_A Thiamine monophosphate 21.9 11 0.00037 41.2 -1.9 34 450-490 237-270 (342)
177 2hna_A Protein MIOC, flavodoxi 21.3 1.6E+02 0.0054 27.1 6.3 59 671-733 2-65 (147)
No 1
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=100.00 E-value=2.6e-93 Score=887.42 Aligned_cols=612 Identities=24% Similarity=0.327 Sum_probs=495.3
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccE--------EEecccccccCCCCc-ccccccCCCCCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPC--------ISHIVTLTSYISIPQ-VFTLARAPGFPTTA 65 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~--------~~~~~~~~l~~~~P~-~~~~~~~~~~~~~~ 65 (875)
|++++.|++.+++.. +++++++|.. +.+++.+ ++|+|...|++++|+ +|+.+++++...+.
T Consensus 559 ml~~V~pe~~~~~~~----~~~~~g~~a~vIG~Vt~~~~v~l~~~~~g~~v~dlp~~~L~~~~p~~~~~~~~~~~~~~~~ 634 (1303)
T 3ugj_A 559 YVLAVAADQLPLFDE----LCKRERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGDAL 634 (1303)
T ss_dssp EEEEECGGGHHHHHH----HHHHHTCCEEEEEEEESSCEEEEEETTTTEEEEEEEHHHHTCCCCCCEEEECCCCCCCCCC
T ss_pred EEEEECHHHHHHHHH----HHHHcCCCeEEEEEEecCCeEEEEECCCCeEEEecchhhhcCCCCceeccccccCcccccc
Confidence 689999999999999 9999999875 4444443 489999889999999 99998875544444
Q ss_pred CCCCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccc
Q psy5570 66 HTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGL 145 (875)
Q Consensus 66 ~~p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~ 145 (875)
..+ ..+++++|+++|++||||||+||++||||+|||+||++|+|||||.|++||||++++.++.+|+|||+|++|+++.
T Consensus 635 ~~~-~~~~~~~l~~vL~~pnvaSK~~l~~~~D~~V~g~tv~~~~vGp~q~p~~DaAVi~~~~~~~~gla~s~g~~p~~~~ 713 (1303)
T 3ugj_A 635 NRA-DITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLDSYYGEAMSIGERAPVAL 713 (1303)
T ss_dssp CCT-TCCHHHHHHHHTTSTTTSCCHHHHTTSCSCTTSCEEECSEETTTTEECCSSEEEESSTTCSCEEEEEEEECGGGGG
T ss_pred CcC-cCCHHHHHHHHhcCCcccchhhHHHhcCcccCcceeeeccccCCCCCCCCeEEEEEeCCCCeEEEEEEecCCCccc
Confidence 433 4689999999999999999999999999999999999999999999999999999876688999999999999999
Q ss_pred cCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchH-HhhhhcCCccc
Q psy5570 146 VDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIR-YVDDNNKITED 223 (875)
Q Consensus 146 ~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~-d~~~~lgiP~i 223 (875)
+|||+||++||+||++||+|+|+.+++++++|+||| |++++|+ ..++.++ ++|+. |+|++||+|+|
T Consensus 714 ~dP~~ga~~AVaealsnlaA~Ga~pl~~v~lsln~~----------~~~g~P~~~~~L~~a--~~g~~~d~c~~lgvpii 781 (1303)
T 3ugj_A 714 LDFAASARLAVGEALTNIAATQIGDIKRIKLSANWM----------AAAGHPGEDAGLYDA--VKAVGEELCPQLGLTIP 781 (1303)
T ss_dssp TCHHHHHHHHHHHHHHHHTTSCCCSGGGCEEEEEEE----------CBTTSTTHHHHHHHH--HHHHHTTHHHHHTCEEE
T ss_pred cCHHHHHHHHHHHHHHHhhcCCCccHHHeEeecccc----------cccCCCchHHHHHHH--HHHHHHHHHHHcCCCee
Confidence 999999999999999999999998999999999999 8889997 3333333 99999 99999999999
Q ss_pred CCCCCCCCCCc------cccccccccc-cccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccc
Q psy5570 224 YPMNPNGSPGK------RERKKKTGRY-LGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEK 296 (875)
Q Consensus 224 ~gkdsm~~~~~------~~~~~~~~~~-~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~ 296 (875)
||||||||..+ .+.+..|+++ +++++ . +.++
T Consensus 782 GGkdSlsn~t~~~~~g~~~~v~~P~TlvitavG-----------------------------~--v~dv----------- 819 (1303)
T 3ugj_A 782 VGKDSMSMKTRWQEGNEQREMTSPLSLVISAFA-----------------------------R--VEDV----------- 819 (1303)
T ss_dssp EEEEECBCEEEECCC--CEEEECCCEEEEEEEE-----------------------------E--ESCG-----------
T ss_pred eccccCccceecccCCCcCccCCCCceEEEEEE-----------------------------E--CCCc-----------
Confidence 99999998331 1122223333 11111 0 0111
Q ss_pred cCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccc
Q psy5570 297 ISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPF 376 (875)
Q Consensus 297 ~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~f 376 (875)
++.++++|
T Consensus 820 ------------------------------------------------------------------------~~~vt~~~ 827 (1303)
T 3ugj_A 820 ------------------------------------------------------------------------RHTLTPQL 827 (1303)
T ss_dssp ------------------------------------------------------------------------GGCCCSCC
T ss_pred ------------------------------------------------------------------------CcccCccc
Confidence 12344455
Q ss_pred cccCCCCcceeeEEeecCCE-EEE-ecccccccCccccccCCcccccCC--CCCCCCCcccCchHHHHHHHHHHH-hH--
Q psy5570 377 RRHGTIPLSVYMKVYKVGDI-VDI-KCAESFYDRMTECVYSSPLTSFNH--GIKPDPWFYVDVMGKGKVAFNSNS-LV-- 449 (875)
Q Consensus 377 r~~G~~pls~~l~~yk~GD~-V~I-~~~~sv~kg~p~~~~g~~~~v~~~--G~~p~~~~~~~~~~~~~~~f~~~~-li-- 449 (875)
++ .||. ++| .+...-.-|-+ . +.+++|+ |..|+ +|+.+.++.+|+.++ ++
T Consensus 828 k~--------------~Gd~LilV~lg~~~~~LGGS-~----la~~~g~~g~~~P~----vd~~~~lk~~~~~v~~li~~ 884 (1303)
T 3ugj_A 828 ST--------------EDNALLLIDLGKGHNALGAT-A----LAQVYRQLGDKPAD----VRDVAQLKGFYDAMQALVAA 884 (1303)
T ss_dssp CC--------------SSEEEEEEETTTTCCCCTTS-H----HHHHTTCCCSCCCC----CCCHHHHHHHHHHHHHHHHT
T ss_pred CC--------------CCCEEEEEECCCCCCCccHH-H----HHHHhCcccCCCCC----CCCHHHHHHHHHHHHHHHHc
Confidence 42 2443 233 11110000001 1 1345666 45888 877889999999999 77
Q ss_pred -HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccc
Q psy5570 450 -FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEV 527 (875)
Q Consensus 450 -~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~ 527 (875)
.|.|+||+|| ||+++|+||| |++++|++ ||+...+ .+++..||+|++
T Consensus 885 G~v~AahDvSdGGLa~aL~Ema-~as~vG~~------Idl~~ip------------------------~~~~~~LF~E~~ 933 (1303)
T 3ugj_A 885 RKLLAWHDRSDGGLLVTLAEMA-FAGHCGVQ------VDIAALG------------------------DDHLAALFNEEL 933 (1303)
T ss_dssp TCCSEEEECCTTHHHHHHHHHH-HHHTSEEE------EECGGGC------------------------SCHHHHHHCCCS
T ss_pred CCeEEEEeCCCChHHHHHHHHH-HhCCceEE------EEecCCC------------------------CchhHHHhCCCC
Confidence 7999999999 8999999999 99999999 8875322 123467999999
Q ss_pred eee--EecCCHHHHHHHHHhhcCCCCCCCc--eeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHH
Q psy5570 528 GLA--FDEWDLEYYTDIFRNKLKRNPTSVE--CFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELE 603 (875)
Q Consensus 528 G~v--v~~~d~~~v~~~f~~~l~r~p~~ve--~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~ 603 (875)
|++ |.+++.+.+.++++. .++. +..||+++++ ..++|..+|+.+.+.++++|+++|++||+.|+
T Consensus 934 G~vv~V~~~~~~~v~~~l~~------~gi~~~a~~IG~V~~~------~~l~i~~~g~~~~~~~~~~l~~~w~~ts~~~~ 1001 (1303)
T 3ugj_A 934 GGVIQVRAEDRDAVEALLAQ------YGLADCVHYLGQALAG------DRFVITANDQTVFSESRTTLRVWWAETTWQMQ 1001 (1303)
T ss_dssp EEEEEEEGGGHHHHHHHHHH------TTCGGGEEEEEEEESS------SEEEEEETTEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEHHHHHHHHHHHHh------CCCCCceEEEEEEcCC------CcEEEEECCEEEEEccHHHHHHHHHHHHHHhh
Confidence 987 566777888888876 5666 7899999876 46888889999989999999999999999999
Q ss_pred hhhcCccchhhhhhhccccCCCcee----cCCCCcccccccccccccccCCcccCCCCccccccccccccceEEEEEecC
Q psy5570 604 KLQMNARCADEEYNSLVTRIGPKYQ----YQPVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREE 679 (875)
Q Consensus 604 ~~~~np~~a~~e~~~~~~~~~p~~~----f~p~~~~~~~~~~~~~~~~~~~thn~p~~~~p~~ga~~~~~~~kVaIlv~p 679 (875)
++|+||.|+++|++.+.++.+|+++ |+|. ++.. .|+. ...++|||+||+||
T Consensus 1002 ~~~~~~~~~~~e~~~~~~~~~p~~~~~~~~~~~-~~~~---------------------~~~~---~~~~~pkVaIi~~~ 1056 (1303)
T 3ugj_A 1002 RLRDNPQCADQEHEAKANDTDPGLNVKLSFDIN-EDIA---------------------APYI---ATGARPKVAVLREQ 1056 (1303)
T ss_dssp HHHSCHHHHHHHHHHTTCTTCCCSCCBCSSCTT-CCTT---------------------HHHH---TTTCCCEEEEEECT
T ss_pred ccccCchhhHHhhhhhccccCCCcccccccccc-cccc---------------------cccc---ccCCCCEEEEEecC
Confidence 9999999999999888776667654 3332 1000 1111 22478999999999
Q ss_pred CCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCC
Q psy5570 680 GINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSD 759 (875)
Q Consensus 680 G~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g 759 (875)
|+||++|+++||+++|+++.+|+++|+..++..|++||+|||||||||||+|+++++|+.+.++++.++++|++|+.++|
T Consensus 1057 G~N~~~~~~~A~~~aG~~~~~v~~~dl~~~~~~l~~~d~lvlPGGfSygD~l~~g~~~a~~~l~~~~l~~~l~~~~~~~g 1136 (1303)
T 3ugj_A 1057 GVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQ 1136 (1303)
T ss_dssp TCCCHHHHHHHHHHTTCEEEEEEHHHHHTTSCCGGGCSEEEECCSCGGGGTTSTTHHHHHHHHTSHHHHHHHHHHHHSSS
T ss_pred CcCCHHHHHHHHHHhCCceEEEeecccccCcccHhhCCEEEECCCCcchhhhccchhHHHHHHhchhHHHHHHHHHHhCC
Confidence 99999999999999999999999988888888899999999999999999999999999999999999999999887679
Q ss_pred ceEEEEehhHHHHHhc-CCCCCCc--cccccCCCCeEEeccEEec--cC------Cc--eEEEeecce-----eecCHHH
Q psy5570 760 TFSFGVCNGCQLMNLL-GWFSVST--QARQPYIKSRVRCPPLKKE--KS------GV--NITRLSITL-----NFSTSDT 821 (875)
Q Consensus 760 ~~vLGICnGfQiL~el-GlLpg~~--~t~~~n~~~~f~~~~v~v~--~~------~~--~~~r~pi~~-----~f~~~~~ 821 (875)
+|+||||||||||+++ |||||.. +++.+|.++||+||||.+. ++ ++ ..+.+||+| +|+++++
T Consensus 1137 ~pvLGICnG~QlL~e~~gllPg~~~~p~l~~N~s~~f~~r~~~~~v~~~~s~~~~~~~g~~~~i~vaHgEG~~~~~~~~~ 1216 (1303)
T 3ugj_A 1137 TLALGVCNGCQMMSNLRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAH 1216 (1303)
T ss_dssp CEEEEETHHHHHHHTTGGGSTTCTTCCEEECCTTSSCEEEEEEEEECCCSCGGGTTCTTCEEEEEEEESSCEEECSSHHH
T ss_pred CcEEEECHHHHHHHHhcCcCCCCCCCCeEecCCCCCeEEeCeEEEECCCCChhhhccCCCEEeeeeEeCCCCeeeCCHHH
Confidence 9999999999999999 9999985 6679999999999999983 21 33 588889999 4567788
Q ss_pred HHHHHhCCCceee
Q psy5570 822 LSWLLDSNTNVTV 834 (875)
Q Consensus 822 l~~l~~~~~~~~~ 834 (875)
+++|++|||-++.
T Consensus 1217 l~~l~~~~~v~~r 1229 (1303)
T 3ugj_A 1217 LAALESKGLVALR 1229 (1303)
T ss_dssp HHHHHHTTCEEEE
T ss_pred HHHHHhCCcEEEE
Confidence 9999999996553
No 2
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=100.00 E-value=5.5e-41 Score=402.99 Aligned_cols=389 Identities=15% Similarity=0.109 Sum_probs=285.2
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccE------EEecccccccCCCCc-ccccccCCC--CCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPC------ISHIVTLTSYISIPQ-VFTLARAPG--FPTTA 65 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~l~~~~P~-~~~~~~~~~--~~~~~ 65 (875)
|++.+.|++.+++.. +++++++|+. +.+++.+ ++|+|...|.+ +|+ +|+.++++. ...+.
T Consensus 308 ll~~v~~~~~~~~~~----~~~~~~~~~~vIG~vt~~~~~~~~~~g~~~~d~~~~~l~~-~p~~~~~~~~~~~~~~~~~~ 382 (725)
T 3ac6_A 308 MVLVPKEGKEKALEE----VFGRWGLDCVPVARTIPERVFRVLFRGEVVAEVPTEALAE-APTYVRVGREDPEVRRLRET 382 (725)
T ss_dssp EEEEECTTCHHHHHH----HHHHTTCCEEEEEEEESSSEEEEEETTEEEEEEEHHHHHS-CCCCCCCCCCCHHHHHHHTS
T ss_pred EEEEEChHHHHHHHH----HHHHcCCCEEEEEEEEeCCeEEEEECCcEEEEcCHHHHhc-CCcccccccCcccccccccc
Confidence 678999999999988 8888888764 3344433 38998877777 999 887766321 11111
Q ss_pred CC-CCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCccc
Q psy5570 66 HT-PPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKG 144 (875)
Q Consensus 66 ~~-p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~ 144 (875)
++ |...+++++|+++|++||||||+||++||||+|+++|+++|. ++|+||++++ ++.++++||+|++|+++
T Consensus 383 ~~~~~~~~~~~~~~~~l~~p~v~sK~~i~~~~D~~v~~~tv~~pg-------~~DaaVi~~~-~~~~~la~s~d~~~~~~ 454 (725)
T 3ac6_A 383 PIPPLEADPQEVLRRLLASPNLASREAVYERYDHQVGTRTALLPG-------KGDAAVLWIK-GTRLGVAAKVDQNPRYS 454 (725)
T ss_dssp CCCCCCCCHHHHHHHHHTSTTTSCCHHHHTTCCCCBCSSEEECCS-------CCSSEEEEET-TSSEEEEEEEECCHHHH
T ss_pred ccCCCccCHHHHHHHHhcCCCccCchhHHHhhccccCCceeecCC-------CCceEEEEeC-CCCeEEEEEEcCCCCee
Confidence 23 433479999999999999999999999999999999998651 2799999997 56789999999999999
Q ss_pred ccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcc-hhcccccccccchHHhhhhcCCccc
Q psy5570 145 LVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITED 223 (875)
Q Consensus 145 ~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i 223 (875)
.+|||+|+++||+||++||+|+|+.++. +++++||. ...+|+ +|++.++ ++||+++|+++|+|+|
T Consensus 455 ~~dP~~~g~~AVaeav~di~a~Ga~Pl~-~~~~l~~g-----------~~~~~~~~~~l~~~--v~Gi~~a~~~~gv~iv 520 (725)
T 3ac6_A 455 RLHPRLGAMHALAEACRNVSVVGAKPLA-YTDGLNLG-----------SPETPEGYHELAET--IAGLKEASEALGVPVV 520 (725)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEECS-----------CSSSHHHHHHHHHH--HHHHHHHHHHHTCCEE
T ss_pred eeCHHHHHHHHHHHHHHHHHHcCCcceE-EEEEEEcC-----------CCCChhHHHHHHHH--HHHHHHHHHHhCCCee
Confidence 9999999999999999999999997766 88888874 114555 6777666 9999999999999999
Q ss_pred CCCCCCCCCCccccccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCCCc
Q psy5570 224 YPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSR 303 (875)
Q Consensus 224 ~gkdsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk~~ 303 (875)
||||||++.+++..++ +++ ...++|++-
T Consensus 521 gG~ts~~~~~~~~~i~--ptl----------------------------~i~~vG~v~---------------------- 548 (725)
T 3ac6_A 521 SGNVSLYNESGGKRIP--PTA----------------------------MVGVVGVLE---------------------- 548 (725)
T ss_dssp EEEEECCCEETTEECC--CEE----------------------------EEEEEEEEE----------------------
T ss_pred eeeeeecCCCCCCccC--Cce----------------------------EEEEEEEec----------------------
Confidence 9999999733211000 111 011122210
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccccccCCCCccCCccccccccccccCCCC
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIP 383 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~~m~~skG~r~~Tr~~~Sk~fr~~G~~p 383 (875)
.+.++++.++
T Consensus 549 ----------------------------------------------------------------~~~~i~~~~~------ 558 (725)
T 3ac6_A 549 ----------------------------------------------------------------VDKRAEMGFR------ 558 (725)
T ss_dssp ----------------------------------------------------------------GGGCCBSSCC------
T ss_pred ----------------------------------------------------------------hhhccChhhC------
Confidence 0122343443
Q ss_pred cceeeEEeecCCEEEEecccccccCccccccCCcccccCC--CCCCCCCcccCchHHHHHHHHHHH-hH---Hhhhhccc
Q psy5570 384 LSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSPLTSFNH--GIKPDPWFYVDVMGKGKVAFNSNS-LV---FFQCAESF 457 (875)
Q Consensus 384 ls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~~~~v~~~--G~~p~~~~~~~~~~~~~~~f~~~~-li---~i~s~hdv 457 (875)
+.||.+.+.+....+-|.+.. ...+++. +..|+ +| .+.++.+++.++ ++ .|.|+||+
T Consensus 559 --------~~GD~lil~g~~g~~~ggs~l----~~~~~~~~~~~~p~----~d-~~~~~~~~~~v~~l~~~~~v~a~~Di 621 (725)
T 3ac6_A 559 --------RPGEVLLLIGEERGELGASEV----LYLLTGKEFGHPPR----LD-LGREKAVQEAIRDLIQRGLTRTAHDV 621 (725)
T ss_dssp --------STTCEEEEESCSCCBCTTCHH----HHHHHSCCCSCCCC----CC-HHHHHHHHHHHHHHHHTTSCSBEEEC
T ss_pred --------CCCCEEEEEcCCCCCccHHHH----HHHHhcccCCCCCC----CC-HHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 457875554443333333311 0012233 44566 53 677888888888 66 68999999
Q ss_pred CC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceee---Eec
Q psy5570 458 YD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLA---FDE 533 (875)
Q Consensus 458 sD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~v---v~~ 533 (875)
++ ||+++|.||+ +++++|++ ||+.. . ....||+|+.|.+ +.+
T Consensus 622 s~GGL~~~L~ema-~~~~~G~~------i~~~~-~--------------------------~~~~Lf~e~~G~~vv~v~~ 667 (725)
T 3ac6_A 622 AEGGLLLALAEMT-FPYGVGAT------VEVRE-E--------------------------GLEALFGEAPSRVLFTVEK 667 (725)
T ss_dssp CTTHHHHHHHHTT-TTTCCCEE------EECSC-C--------------------------SHHHHTCBCSSCEEEEECG
T ss_pred CCCcHHHHHHHHH-hcCCCcEE------EEeCc-c--------------------------hHHHhhCCCCCeEEEEEcH
Confidence 99 9999999999 99999998 88631 0 1257999999944 455
Q ss_pred CCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHH
Q psy5570 534 WDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELE 603 (875)
Q Consensus 534 ~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~ 603 (875)
++.+.+.+.+++ .++++..||++.++ .+.+..+++ +.+.++++|+++|++|+..++
T Consensus 668 ~~~~~~~~~l~~------~g~~~~~IG~v~~~-------~~~i~~~~~-~~~~~~~~l~~~w~~~~~~~~ 723 (725)
T 3ac6_A 668 TRLQEATLLLEE------RGLPYRVLGETGGK-------SLTVLTPGG-VLEWSLEELLSAWKAPLREVL 723 (725)
T ss_dssp GGHHHHHHHHHH------TTCCEEEEEEECSS-------EEEEEETTE-EEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh------CCCCeEEEEEEeCC-------EEEEeeCCe-EEEeeHHHHHHHHHHHHHHHh
Confidence 566778888876 57789999998642 466666666 778899999999999987665
No 3
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=99.96 E-value=1.2e-30 Score=308.01 Aligned_cols=188 Identities=12% Similarity=-0.021 Sum_probs=151.7
Q ss_pred CeeeeCCCCcCccccccccccccccCCCC------CCCcccE------EEecccccccCCCCc-ccccccCCCCCCCCCC
Q psy5570 1 MYLGIHPGAFSRVPYHGAHSSQHIRAPGP------EQRHAPC------ISHIVTLTSYISIPQ-VFTLARAPGFPTTAHT 67 (875)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~------~~~~~~~~l~~~~P~-~~~~~~~~~~~~~~~~ 67 (875)
|++.+.|++.+++.. +++++++|+. +.+++.+ ++|+|...| .++|+ .++..++ +...++..
T Consensus 297 ~l~~v~~~~~~~~~~----~~~~~g~~~~vIG~Vt~~~~l~v~~~g~~~~d~~~~~l-~~~~~~~~~~~~~-~~~~~~~~ 370 (615)
T 1vk3_A 297 MAVVTSPQKASRILE----IARKHLLFGDVVAEVIEEPVYRVMYRNDLVMEVPVQLL-ANAPEEDIVEYTP-GKIPEFKR 370 (615)
T ss_dssp EEEEECGGGHHHHHH----HHHHTTCEEEEEEEEESSCEEEEEETTEEEEEEEHHHH-HSCCCCCCCCCCC-CSCCCCCC
T ss_pred EEEEEcHHHHHHHHH----HHHHcCCCEEEEEEEEeCCeEEEEECCeEEEEecHHHH-hcCchhhccccCc-ccccccCc
Confidence 678899999999888 8888887763 3344333 378877767 88998 7766552 22222221
Q ss_pred CCCcCHHHHHHHHhcCcccccccceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccC
Q psy5570 68 PPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVD 147 (875)
Q Consensus 68 p~~~dl~~~l~~vL~~pnVaSK~~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~d 147 (875)
. + | | +|||+||++||||+|||+||++ |++||||++++ + .++++||+|++|+++.+|
T Consensus 371 ~---~--------l--~-~~sk~~~~~~~D~~v~~~~~~~--------pg~DaaV~~~~-~-~~~~~~t~d~~~~~~~~d 426 (615)
T 1vk3_A 371 V---E--------F--E-EVNAREVFEQYDHMVGTDTVVP--------PGFGAAVMRIK-R-DGGYSLVTHSRADLALQD 426 (615)
T ss_dssp C---C--------C--E-ECCHHHHHHTTTCCBSTTSSSC--------GGGSCEEEEEE-T-TEEEEEEEECCHHHHTTC
T ss_pred c---c--------c--c-ccCcccceecCCCCCCCceeec--------cCCCeEEEEEc-C-CcEEEEEecCCCcccccC
Confidence 1 1 1 2 6999999999999999999974 36899999998 3 789999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccCcchhcccccccccchHHhhhhcCCcccCCCC
Q psy5570 148 PKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMN 227 (875)
Q Consensus 148 Py~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkd 227 (875)
||+||++||+||++||+|+|+.++. +++|+||+ |+ .+|+ |++.++ ++|+.++|++||+|+|||||
T Consensus 427 P~~~g~~Avaealsdl~A~Ga~p~~-~~~~l~~~----------~~-~~~~-~~l~~~--~~G~~~~~~~~g~~~igG~~ 491 (615)
T 1vk3_A 427 TYWGTLIAVLESVRKTLSVGAEPLA-ITNCVNYG----------DP-DVDP-VGLSAM--MTALKNACEFSGVPVASGNA 491 (615)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEECS----------CT-TTCH-HHHHHH--HHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCccce-eEEEEecC----------CC-CCch-HHHHHH--HHHHHHHHHHcCCCcccccc
Confidence 9999999999999999999997766 99999997 54 3577 466666 99999999999999999999
Q ss_pred CCCCCC
Q psy5570 228 PNGSPG 233 (875)
Q Consensus 228 sm~~~~ 233 (875)
||++++
T Consensus 492 S~~~~~ 497 (615)
T 1vk3_A 492 SLYNTY 497 (615)
T ss_dssp ECCCEE
T ss_pred cccCcC
Confidence 998743
No 4
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=99.78 E-value=2.9e-20 Score=167.90 Aligned_cols=68 Identities=24% Similarity=0.202 Sum_probs=65.5
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GI 425 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~ 425 (875)
|++|+|+|++||++||++||+||.+||+++|++|+.||+|+|++++++||||| +||||+||+|+|. ++
T Consensus 1 m~~s~G~R~~TR~~fsr~fR~~G~~pls~~m~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~ 70 (96)
T 1vq8_Q 1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGD 70 (96)
T ss_dssp -CCCCSTTTTCTTTTSCCGGGCSSCCSHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETT
T ss_pred CCCCCCccccchHhhCCCccccCCCCHHHHHHHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCC
Confidence 78999999999999999999999999999999999999999999999999999 9999999999998 65
No 5
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.78 E-value=3.6e-20 Score=167.70 Aligned_cols=68 Identities=26% Similarity=0.407 Sum_probs=65.3
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GI 425 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~ 425 (875)
|++++|+|++||++||++||+||.+||+++|++|++||+|+|+++++|||||| +|||||||+|++. +.
T Consensus 2 m~~s~G~R~~TR~~fsr~fRk~G~~pls~~m~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~ 71 (97)
T 3j21_R 2 VQKAHSFRRKTRKKLSKHPRRRGLPPLTRFLQEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGE 71 (97)
T ss_dssp -CCSCCSSTTCTTTSCCCTTTCSSCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETT
T ss_pred CCCCCCCcCCChhhhcCCccccCCCcHHHHHHHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCc
Confidence 77999999999999999999999999999999999999999999999999999 9999999999988 55
No 6
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=99.75 E-value=1.7e-19 Score=167.27 Aligned_cols=67 Identities=45% Similarity=0.689 Sum_probs=64.6
Q ss_pred cCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CC
Q psy5570 359 TNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GI 425 (875)
Q Consensus 359 ~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~ 425 (875)
++|+|+|++||++||++||+||++||+++|++|++||+|+|++|++|||||| +|||||||+|+|. ++
T Consensus 1 ~~skG~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~ 69 (116)
T 3jyw_Q 1 GKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKS 69 (116)
T ss_dssp CCCCSSSSSCHHHHSCCSTTCSSCCSSTTTCCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSS
T ss_pred CCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCc
Confidence 3689999999999999999999999999999999999999999999999999 9999999999998 65
No 7
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.72 E-value=7.9e-19 Score=171.49 Aligned_cols=69 Identities=49% Similarity=0.836 Sum_probs=64.3
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CCC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GIK 426 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~~ 426 (875)
|++|+|+|++||++||++||+||++||+++|++|+.||+|+|+++++|||||| +||||+||+|+|. |+.
T Consensus 1 M~~s~G~R~~TR~~fsr~fRk~G~~plst~m~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~A 71 (160)
T 2zkr_q 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHA 71 (160)
T ss_dssp ---CCSSSTTCHHHHSCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSS
T ss_pred CCCCCCccccchHhhCCCccccCCCcHHHHHHHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCE
Confidence 78999999999999999999999999999999999999999999999999999 9999999999998 663
No 8
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=99.71 E-value=1e-18 Score=171.17 Aligned_cols=68 Identities=38% Similarity=0.652 Sum_probs=66.0
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC-CC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH-GI 425 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~-G~ 425 (875)
|++|+|+|++||++||++||+||++||+++|++|+.||+|+|++|++|||||| +||||+||+|+|. ++
T Consensus 1 m~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~ 70 (164)
T 3iz5_U 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKR 70 (164)
T ss_dssp CCCCCCTTSSCHHHHCCCGGGCSCCCTHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSS
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCC
Confidence 78999999999999999999999999999999999999999999999999999 9999999999987 55
No 9
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=99.71 E-value=1.1e-18 Score=170.51 Aligned_cols=66 Identities=47% Similarity=0.735 Sum_probs=64.7
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH 423 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~ 423 (875)
|++|+|+|++||++||++||+||++||++||++|+.||+|+|++|++|||||| +||||+||+|+|.
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nv 67 (160)
T 3izc_U 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNV 67 (160)
T ss_dssp CCSCCCSSTTCHHHHCCCTTTCSCCCHHHHHCCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEE
T ss_pred CCCCCCCCCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCccCCCCCCcccCCCCeEEEee
Confidence 78999999999999999999999999999999999999999999999999999 9999999999985
No 10
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=99.71 E-value=1.1e-18 Score=170.10 Aligned_cols=66 Identities=36% Similarity=0.567 Sum_probs=63.8
Q ss_pred ccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCcc-ccccCCcccccCC
Q psy5570 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMT-ECVYSSPLTSFNH 423 (875)
Q Consensus 358 m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p-~~~~g~~~~v~~~ 423 (875)
|++|+|+|++||++||++||+||++||++||++|+.||+|+|++|++|||||| +||||+||+|++.
T Consensus 1 M~~s~G~R~gTR~~fsr~fRk~G~~plstym~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nv 67 (157)
T 4a17_P 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNV 67 (157)
T ss_dssp -CCCCCTTTTCHHHHSCCTTCTTCCCHHHHHCCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEE
T ss_pred CCCCCCCcCCChhhhcCCccccCCCCHHHHHHHhcCCCEEEEeccCceecCCCCccccCCcccEeee
Confidence 78999999999999999999999999999999999999999999999999999 9999999999975
No 11
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=99.52 E-value=4.6e-14 Score=142.08 Aligned_cols=132 Identities=13% Similarity=0.145 Sum_probs=108.7
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEee--------------cccccccCccCccEEEEcCCcCccccc
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQ--------------DLLENKITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~--------------dl~~~~~~l~~~d~lvlPGGfS~gD~l 731 (875)
.+.+++|++.+|++ +.|+ +.+|+++|++|.+++.+ |..-++.+.++||+|++|||.+ .+.+
T Consensus 7 t~~~v~il~~~gFe-~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g-~~~l 84 (177)
T 4hcj_A 7 TNNILYVMSGQNFQ-DEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIG-CITL 84 (177)
T ss_dssp CCEEEEECCSEEEC-HHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGG-GGGG
T ss_pred CCCEEEEECCCCcc-HHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCcc-HHHH
Confidence 34568889999998 6665 67999999999999763 4444456678999999999975 3455
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccccc-------CCCCeEEeccEEeccCC
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQP-------YIKSRVRCPPLKKEKSG 804 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~-------n~~~~f~~~~v~v~~~~ 804 (875)
+. ++.+.+.+++|.++ |+++.+||+|.++|.++|||.|++.|..+ +.+.+|++++|++|.+
T Consensus 85 ~~----------~~~~~~~l~~~~~~-~k~iaaIC~g~~~La~aGlL~gr~~T~~~~~~~~l~~~ga~~~~~~vV~Dg~- 152 (177)
T 4hcj_A 85 WD----------DWRTQGLAKLFLDN-QKIVAGIGSGVVIMANAKILEEINVTCLSADESHVRHGNANIMSENVVVSGN- 152 (177)
T ss_dssp TT----------CHHHHHHHHHHHHT-TCEEEEETTHHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECSSSEEEETT-
T ss_pred hh----------CHHHHHHHHHHHHh-CCEEEEecccHHHHHHCCCCCCCEEEEeCCHHHHHHhCCCEEecCCEEEECC-
Confidence 44 88999999999995 99999999999999999999999977744 4568999999998886
Q ss_pred ceEEEeecce
Q psy5570 805 VNITRLSITL 814 (875)
Q Consensus 805 ~~~~r~pi~~ 814 (875)
+.|++-|-+.
T Consensus 153 liTs~g~~~~ 162 (177)
T 4hcj_A 153 IVTANGPTSS 162 (177)
T ss_dssp EEEECSGGGH
T ss_pred EEECCCHHHH
Confidence 8888887665
No 12
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_Q
Probab=99.48 E-value=9.5e-15 Score=135.64 Aligned_cols=70 Identities=43% Similarity=0.645 Sum_probs=65.8
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCCCcceE
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSVSRKTC 306 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk~~~s~ 306 (875)
+++..++++++.+++++|+||||+.|||+||+|||++++++|++||++|++++++|+ +|||.+||||.++
T Consensus 31 ~~yk~GD~VdIk~~gsVqKGmPHk~YHGKTGrV~nvt~~AvgivVnkqv~gKil~KrInVriEHik~sk~r~~~ 104 (116)
T 3jyw_Q 31 KVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKAAAAA 104 (116)
T ss_dssp CCCCTTCBCCBCCCSSSCTTCCCSTTSSCCCBCCCCCSSSSSEEEECCCSSSSCCCEEEECGGGBCCCCCSGGG
T ss_pred HHhCCCCEEEEeccCccCCCCCCcccCCCCeEEEeecCcEEEEEEEEEECCeeeeeEEEECHhHCccccCHHHH
Confidence 567889999999999999999999999999999999999999999999999999998 6799999999554
No 13
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural genomics, JCSG, PSI, protein structure initiative; 2.15A {Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1 d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A* 2hry_A*
Probab=99.46 E-value=3.6e-14 Score=167.74 Aligned_cols=282 Identities=16% Similarity=0.030 Sum_probs=178.0
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccC
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKN 196 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~ 196 (875)
..||+|+++. ....++++++.+.+.+..|||.||+.+|++++++++++|+.++. +.++++|. .|
T Consensus 63 gdDAavi~~~--~~~~l~~t~e~h~~p~~~~P~~gg~~av~~~lrDi~a~GA~P~a-~l~~l~~g---------~~---- 126 (615)
T 1vk3_A 63 EGNAGVVNLD--DYYSVAFKIESHNHPSAIEPYNGAATGVGGIIRDVLAMGARPTA-IFDSLHMS---------RI---- 126 (615)
T ss_dssp SSSTTEEESS--SSEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEES---------SC----
T ss_pred CCceEEEEeC--CCeEEEEEecccCCccccChhHHHHHHHHHHhccccccCceehh-hhhhhhHH---------HH----
Confidence 5799999974 35789999998999999999999999999999999999986655 66666652 12
Q ss_pred cchhcccccccccchHHhhhhcCCcccCCCCCCCCCCccccccccccccccccccccccCCCccccCCCcceecceeeec
Q psy5570 197 HGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHA 276 (875)
Q Consensus 197 P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a 276 (875)
+-++ ++|+.++|+++|+|+|+|.-..+. .|. +..+ +....
T Consensus 127 --l~~~-----~~Gi~~~~~~~GvplvGG~t~~~~-----------------------------~y~---~~p~-~~~~~ 166 (615)
T 1vk3_A 127 --IDGI-----IEGIADYGNSIGVPTVGGELRISS-----------------------------LYA---HNPL-VNVLA 166 (615)
T ss_dssp --CHHH-----HHHHHHHHHHHTCCEEEEEEEECG-----------------------------GGT---TCCE-EEEEE
T ss_pred --HHHH-----HHHHHHHHHHcCCCEeEEEEEEec-----------------------------CCC---CCce-EEEEE
Confidence 3233 899999999999999976543211 010 0000 11112
Q ss_pred ccEEEEcccccccccccccccCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhccccccc
Q psy5570 277 VGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRTS 356 (875)
Q Consensus 277 ~g~~v~k~v~~ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~~ 356 (875)
+|++-.
T Consensus 167 vG~v~~-------------------------------------------------------------------------- 172 (615)
T 1vk3_A 167 AGVVRN-------------------------------------------------------------------------- 172 (615)
T ss_dssp EEEEET--------------------------------------------------------------------------
T ss_pred EEEEcH--------------------------------------------------------------------------
Confidence 222200
Q ss_pred cccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCccccccCCc--cc-ccCCC-CCCCCCcc
Q psy5570 357 NMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSP--LT-SFNHG-IKPDPWFY 432 (875)
Q Consensus 357 ~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~~--~~-v~~~G-~~p~~~~~ 432 (875)
..++.+... +.||.+.+.|..+-..| .||.. .. +.+.. ..|.+ +
T Consensus 173 ------------~~~~~~~~~--------------~~GD~Iil~G~~tg~~G----~~g~~~~~~~~~~~~~~~~~v-~- 220 (615)
T 1vk3_A 173 ------------DMLVDSKAS--------------RPGQVIVIFGGATGRDG----IHGASFASEDLTGDKATKLSI-Q- 220 (615)
T ss_dssp ------------TSCCCSSCC--------------STTCEEEEEESCBCSCC--------------------CGGGC-C-
T ss_pred ------------HHccCccCC--------------CCcCEEEEECCCCCCCc----ccHHHHHHHHhhccccccccc-C-
Confidence 001111111 45776555332110000 01100 00 00000 11110 0
Q ss_pred cCchHHHHHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhccccch
Q psy5570 433 VDVMGKGKVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGL 507 (875)
Q Consensus 433 ~~~~~~~~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~ 507 (875)
.-++...+...+.+. ++ .|.++||+++ ||+.++.||+ .+++.|++ ||+...+..
T Consensus 221 ~~~~~~e~~~~~~~~~l~~~~~i~a~~Dis~gGL~~~l~ema-~~sg~G~~------Idl~~vP~~-------------- 279 (615)
T 1vk3_A 221 VGDPFAEKMLIEAFLEMVEEGLVEGAQDLGAGGVLSATSELV-AKGNLGAI------VHLDRVPLR-------------- 279 (615)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCCSEEEECCTTHHHHHHHHHH-HHTTCEEE------EEGGGSCBS--------------
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeeEEEeCCCccHHHHHHHHH-HhCCceEE------EEecccCCC--------------
Confidence 112333344444444 44 5899999997 9999999999 88889998 887544310
Q ss_pred hhhhhhhcchhhhhhccccceee---EecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeec
Q psy5570 508 LFIYFIVQRTKLCIVQRHEVGLA---FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVL 584 (875)
Q Consensus 508 ~~~~~~~~~~~~~~LFsE~~G~v---v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~ 584 (875)
..+.++++.+|+|..|.+ +.+++.+.+.+++++ .++++..||+++.+ ..+.+..+|+.+.
T Consensus 280 -----~~~~~~~e~l~sesq~r~l~~v~~~~~~~~~~~~~~------~g~~~~vIG~Vt~~------~~l~v~~~g~~~~ 342 (615)
T 1vk3_A 280 -----EPDMEPWEILISESQERMAVVTSPQKASRILEIARK------HLLFGDVVAEVIEE------PVYRVMYRNDLVM 342 (615)
T ss_dssp -----STTCCHHHHHHCCCSSEEEEEECGGGHHHHHHHHHH------TTCEEEEEEEEESS------CEEEEEETTEEEE
T ss_pred -----CCCCCHHHHHHcCCCCeEEEEEcHHHHHHHHHHHHH------cCCCEEEEEEEEeC------CeEEEEECCeEEE
Confidence 012244578899988754 666778888888876 67889999999865 3577888999988
Q ss_pred cccHHHHHHHHHHH
Q psy5570 585 NEDLGTLFLIWERT 598 (875)
Q Consensus 585 ~~~l~~L~~~w~~t 598 (875)
+.++++|.+.|+.+
T Consensus 343 d~~~~~l~~~~~~~ 356 (615)
T 1vk3_A 343 EVPVQLLANAPEED 356 (615)
T ss_dssp EEEHHHHHSCCCCC
T ss_pred EecHHHHhcCchhh
Confidence 99999998888754
No 14
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.41 E-value=2.3e-13 Score=138.84 Aligned_cols=115 Identities=25% Similarity=0.421 Sum_probs=90.5
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||+|+.++|++.+.++..+|+++|+++.++... ..++++|+||||||.+++|.++. +.+.++..+.+.
T Consensus 3 ~~i~il~~~~~~~~~~~~~~l~~~g~~~~~~~~~------~~~~~~d~lil~Gg~~~~~~~~~-----~~~~~~~~~~~~ 71 (213)
T 3d54_D 3 PRACVVVYPGSNCDRDAYHALEINGFEPSYVGLD------DKLDDYELIILPGGFSYGDYLRP-----GAVAAREKIAFE 71 (213)
T ss_dssp CEEEEECCTTEEEHHHHHHHHHTTTCEEEEECTT------CCCSSCSEEEECEECGGGGCSST-----THHHHTSTTHHH
T ss_pred cEEEEEEcCCCCccHHHHHHHHHCCCEEEEEecC------CCcccCCEEEECCCCchhhhhcc-----ccccccHHHHHH
Confidence 5899999999998789999999999999887632 25789999999999988777643 123345678899
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCCCeEEeccEEe
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIKSRVRCPPLKK 800 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~~~f~~~~v~v 800 (875)
+++++++ |+|+||||.|+|+|.++|+|+|.. .++...++...+..+
T Consensus 72 l~~~~~~-~~pilgIC~G~qlLa~aGll~g~v---~~~~~~~~~~g~~~v 117 (213)
T 3d54_D 72 IAKAAER-GKLIMGICNGFQILIEMGLLKGAL---LQNSSGKFICKWVDL 117 (213)
T ss_dssp HHHHHHH-TCEEEECHHHHHHHHHHTSSCSEE---ECCSSSSCBCCEEEE
T ss_pred HHHHHHC-CCEEEEECHHHHHHHHcCCCCCCe---ecCCCCceEeeeEEE
Confidence 9999985 999999999999999999999874 333334444444443
No 15
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=99.41 E-value=1.7e-15 Score=190.08 Aligned_cols=189 Identities=26% Similarity=0.345 Sum_probs=124.0
Q ss_pred cCCChHHHHhcCCc--ccccCCCCCCCceEEEeCCcchhHHHHhhhhccccchhhhhhhhcchhhhhhccccceeeEecC
Q psy5570 457 FYDRMTECVYSSPL--TSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEW 534 (875)
Q Consensus 457 vsDGL~~al~eMa~--~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~LFsE~~G~vv~~~ 534 (875)
++|+|+++++.... ...+...+|+++.+||+...++++|+++|. ++|++++++
T Consensus 139 l~d~m~e~~~~~~~~~~~lf~~~~p~~~~~v~~~~~~~~~L~~~~~-------------------------~~gLaL~~~ 193 (1303)
T 3ugj_A 139 LHDRMMETVFSSLTDAEKLFIHHQPAPVSSVDLLGEGRQALIDANL-------------------------RLGLALAED 193 (1303)
T ss_dssp TSCTTTEEEESSGGGGGGGGCCCCCCCCCBCCHHHHTTHHHHHHHH-------------------------HTTCCCCHH
T ss_pred cCCCCccEEecCchhhhhhcccCCCCceeEEeCCCCCHHHHHHHHh-------------------------cCCCCCCHH
Confidence 46678777764321 111224579999999987667777776554 479999999
Q ss_pred CHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEeeccccHHHHHHHHHHHHHHHHhhhcCccchhh
Q psy5570 535 DLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADE 614 (875)
Q Consensus 535 d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~i~~~~l~~L~~~w~~ts~~i~~~~~np~~a~~ 614 (875)
|++++.+.|+ .|+|||+++|+++|+|.||||||||+|+.+|.++|++..+ .|++++++|+.. . .+.+. +
T Consensus 194 e~~~i~~~f~-~lgR~Pt~~El~~~~~~wSEHCrhk~f~~~~~id~~~~~~----~l~~~i~~t~~~-~----~~~~~-~ 262 (1303)
T 3ugj_A 194 EIDYLQEAFT-KLGRNPNDIELYMFAQANSEHCRHKIFNADWIIDGKPQPK----SLFKMIKNTFET-T----PDYVL-S 262 (1303)
T ss_dssp HHHHHHHHHH-HHTSCCBHHHHHHHHHHTSHHHHCHHHHSEEEETTEEESS----CHHHHHHHHHHH-C----CTTEE-E
T ss_pred HHHHHHHHHH-hcCCCCCHHHHHHHHHHhhhhccccccCCceEEcCcccch----hHHHHHHHHHHh-C----CCcEE-E
Confidence 9999999997 7999999999999999999999999999999999998764 666678777642 1 11111 1
Q ss_pred hh--h-hccccCCCceecCCCCccccccccc----ccccccCCcccCCCCccccccccccc-------------cceEEE
Q psy5570 615 EY--N-SLVTRIGPKYQYQPVRDDIVGATLG----KKVTRIGPKYQYQPVRDDIVGATLGK-------------KVISIA 674 (875)
Q Consensus 615 e~--~-~~~~~~~p~~~f~p~~~~~~~~~~~----~~~~~~~~thn~p~~~~p~~ga~~~~-------------~~~kVa 674 (875)
.| + .+.+ ......|.|..++. .+.. ...+=..+|||||++++||+||+|+. ++|..+
T Consensus 263 ~~~dna~vi~-~~~~~~~~~~~~~~--~~~~~~e~~~v~fK~ETHNHPsaIePf~GAaTGvGG~iRD~~~~G~GarPiA~ 339 (1303)
T 3ugj_A 263 AYKDNAAVME-GSAVGRYFADHNTG--RYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAG 339 (1303)
T ss_dssp CSSSSSEEEE-EEEEEEEEECTTTC--BEEEEEEEEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTSTTCCEEEEE
T ss_pred EecCccEEee-ecccccccccCCcc--ccccccceeEEEEEEeccCCCCccCCcCcccceeEEEEEchhccCCCCEeeee
Confidence 11 0 0000 00000132221100 0000 00223467999999999999999864 557655
Q ss_pred E-------EecCCCCCH
Q psy5570 675 V-------LREEGINGD 684 (875)
Q Consensus 675 I-------lv~pG~n~~ 684 (875)
. +++||...+
T Consensus 340 ~~~~~~~~lr~~~~~~p 356 (1303)
T 3ugj_A 340 LVGFSVSNLRIPGFEQP 356 (1303)
T ss_dssp EEEEEESCCCCTTCCCT
T ss_pred eeeeeeccccCCCCCCc
Confidence 4 456776543
No 16
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.38 E-value=1.2e-13 Score=135.15 Aligned_cols=75 Identities=55% Similarity=0.799 Sum_probs=61.1
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccc----cccCCCCCcceEEEEEE
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSA----EKISSSVSRKTCLAQFY 311 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~----~~~~~sk~~~s~laq~~ 311 (875)
+++..|+++++.+++|+|+||||+.|||+||+|+|++++|+|++|+++++++++++++ |||.+||||.+||.++.
T Consensus 32 ~~yk~GD~VdIk~~~svqKGmPhk~yHGkTGrV~~v~~~AvgViVnk~v~~kil~Kri~vr~eHik~sk~r~~Fl~rvk 110 (160)
T 2zkr_q 32 RIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVK 110 (160)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEECCCCSSSEEEEEEECCSSCCSCEEEEECGGGEEEC-----------
T ss_pred HHcCCCCEEEEEecCCcccCCCCcccCCCCeEEEeEcCCEEEEEEEEeeCCeeeeeEEEcCHHHcCccccHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999996 89999999999999976
No 17
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_U
Probab=99.36 E-value=6.9e-14 Score=137.12 Aligned_cols=73 Identities=47% Similarity=0.698 Sum_probs=67.2
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCCCcceEEEE
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSVSRKTCLAQ 309 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk~~~s~laq 309 (875)
+++..++++++.+++|+|+||||+.|||+||+|||++++|+|++||++|++++++|+ +|||.+||||.+||.+
T Consensus 32 ~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvt~~AvgV~Vnk~v~gkil~KrInVriEHik~sk~r~~Flkr 108 (164)
T 3iz5_U 32 RTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCNEEFLQR 108 (164)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTEEEEEEEECSSSEEEEEECCSSSSCCEEEEEECGGGEEECHHHHHHHHH
T ss_pred HHhCCCCEEEEEccCcccCCCCCcccCCCCeeEEeecCCEEEEEEEeeeCCeeeeeEEEEeHHHcccccCHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999998 6799999988665554
No 18
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_P 4a1c_P 4a1e_P
Probab=99.36 E-value=6.8e-14 Score=136.46 Aligned_cols=74 Identities=38% Similarity=0.663 Sum_probs=67.6
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCCCcceEEEEE
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSVSRKTCLAQF 310 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk~~~s~laq~ 310 (875)
+++..++++++.+++|+|+||||+.|||+||+|||++++|+|++||++|++++++|+ +|||.+||||.+||.++
T Consensus 32 ~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~sk~r~~flkrv 109 (157)
T 4a17_P 32 TTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEKRLHVKIEHVRPSNVKTALSKRY 109 (157)
T ss_dssp CCCCTTCEEEECCCSSCCTTCCCGGGTTEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEGGGEEECHHHHHHHHHH
T ss_pred HHhcCCCEEEEeccCceecCCCCccccCCcccEeeecCeEEEEEEEEeECCEeeeeEEEEeHHHccccccHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999998 67999999886665553
No 19
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=99.36 E-value=2.5e-12 Score=126.69 Aligned_cols=130 Identities=18% Similarity=0.222 Sum_probs=99.2
Q ss_pred ceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec--------------ccccccCccCccEEEEcCCcCcccccc
Q psy5570 670 VISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD--------------LLENKITLDRFKGLVFPGGFSYADALG 732 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d--------------l~~~~~~l~~~d~lvlPGGfS~gD~l~ 732 (875)
.|||+|++++|++ +.|+ ..+|+++|+++.+++.+. ..-++....+||+|++|||.. .+.
T Consensus 2 ~~ki~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~-~~~-- 77 (168)
T 3l18_A 2 SMKVLFLSADGFE-DLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA-PEI-- 77 (168)
T ss_dssp CCEEEEECCTTBC-HHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH-HHH--
T ss_pred CcEEEEEeCCCcc-HHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC-HHH--
Confidence 5799999999998 5554 678999999999987641 111122345799999999974 222
Q ss_pred chhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccccc-------CCCCeEEeccEEeccCCc
Q psy5570 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQP-------YIKSRVRCPPLKKEKSGV 805 (875)
Q Consensus 733 ~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~-------n~~~~f~~~~v~v~~~~~ 805 (875)
+..++.+.+.++++.++ ++++.+||+|.++|.++|||.|++.|.-+ +.+.+|.++.++++.+ +
T Consensus 78 --------~~~~~~l~~~l~~~~~~-~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~-i 147 (168)
T 3l18_A 78 --------VRLNEKAVMITRRMFED-DKPVASICHGPQILISAKVLKGRRGTSTITIRDDVINAGAEWIDAEVVVDGN-W 147 (168)
T ss_dssp --------HTTCHHHHHHHHHHHHT-TCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEETT-E
T ss_pred --------hccCHHHHHHHHHHHHC-CCEEEEECHhHHHHHHCCccCCCEEEeCccHHHHHHhCCCEEecCCEEEeCC-E
Confidence 34588899999999985 99999999999999999999999877633 3346777777777765 6
Q ss_pred eEEEeecc
Q psy5570 806 NITRLSIT 813 (875)
Q Consensus 806 ~~~r~pi~ 813 (875)
.|++-|-+
T Consensus 148 iT~~g~~~ 155 (168)
T 3l18_A 148 VSSRHPGD 155 (168)
T ss_dssp EEECSGGG
T ss_pred EEcCCHHH
Confidence 67766654
No 20
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U 3o58_T 3o5h_T 3u5e_T 3u5i_T 4b6a_T
Probab=99.36 E-value=7.8e-14 Score=136.41 Aligned_cols=74 Identities=43% Similarity=0.654 Sum_probs=67.7
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEccccccccccc----ccccCCCCCcceEEEEE
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKS----AEKISSSVSRKTCLAQF 310 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l----~~~~~~sk~~~s~laq~ 310 (875)
+++..++++++.+++|+|+||||+.|||+||+|||++++|+|++||++|++++++|+ +|||.+||||.+||.++
T Consensus 32 ~~yk~GD~VdIk~~gsVqKGmPHk~YHGkTGrV~nvtq~AvgiiVnk~v~gkil~KrI~VriEHik~sk~r~~flkrv 109 (160)
T 3izc_U 32 KVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERV 109 (160)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEECSSSEEEEECCCSSSSCCCEEEEECTTSEEECHHHHHHHHHH
T ss_pred HHhcCCCEEEEeccCccCCCCCCcccCCCCeEEEeeCCcEEEEEEEEEECCEeeeeEEEEeHHHccccccHHHHHHHH
Confidence 457789999999999999999999999999999999999999999999999999998 67999999886665553
No 21
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=99.35 E-value=1.1e-12 Score=133.55 Aligned_cols=133 Identities=11% Similarity=0.130 Sum_probs=101.3
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEee-----------------cccccc-----cCccCccEEEEcC
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQ-----------------DLLENK-----ITLDRFKGLVFPG 723 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~-----------------dl~~~~-----~~l~~~d~lvlPG 723 (875)
..|||+|++++|++ +.|+ +.+|+++|+++..++.. |..-.+ ..+++||+|++||
T Consensus 3 ~M~kV~ill~dGfe-~~E~~~p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD~lvvPG 81 (194)
T 4gdh_A 3 HMVKVCLFVADGTD-EIEFSAPWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPG 81 (194)
T ss_dssp --CCEEEEEETTCC-HHHHHHHHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCSEEEECC
T ss_pred CCCEEEEEECCCcC-HHHHHHHHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCCEEEECC
Confidence 45789999999999 6665 67899999999888652 111111 1234689999999
Q ss_pred CcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccc-------cCCCCeEEec
Q psy5570 724 GFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQ-------PYIKSRVRCP 796 (875)
Q Consensus 724 GfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~-------~n~~~~f~~~ 796 (875)
|....+.++ .++.+.+.+++|+++.++++..||.|+ +|.++|+|.|++.|.. ++.+.+|.++
T Consensus 82 G~~~~~~l~----------~~~~l~~~l~~~~~~~~k~iaaiC~g~-~l~~aglL~gr~~T~~~~~~~~l~~~g~~~~d~ 150 (194)
T 4gdh_A 82 GGLGAKTLS----------TTPFVQQVVKEFYKKPNKWIGMICAGT-LTAKTSGLPNKQITGHPSVRGQLEEGGYKYLDQ 150 (194)
T ss_dssp CHHHHHHHH----------TCHHHHHHHHHHTTCTTCEEEEEGGGG-HHHHHTTCCCSEECCCGGGHHHHHHTTCEECCS
T ss_pred CchhHhHhh----------hCHHHHHHHHHhhhcCCceEEeecccc-cchhhceecCCceEecCcHHHHHHhcCCeeecc
Confidence 975344443 488999999999876689999999998 5778899999987773 4456889999
Q ss_pred cEEeccCCceEEEeecce
Q psy5570 797 PLKKEKSGVNITRLSITL 814 (875)
Q Consensus 797 ~v~v~~~~~~~~r~pi~~ 814 (875)
.|++|.| +.|++-|-+-
T Consensus 151 ~vV~Dg~-iiTs~g~~~~ 167 (194)
T 4gdh_A 151 PVVLEEN-LITSQGPGTA 167 (194)
T ss_dssp SEEEETT-EEEECSGGGH
T ss_pred eEEEcCC-EEECCCHhHH
Confidence 9988876 8888887664
No 22
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.35 E-value=2.4e-13 Score=138.90 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=68.3
Q ss_pred EEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHH
Q psy5570 672 SIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQL 751 (875)
Q Consensus 672 kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v 751 (875)
||+|| ++|+.|..++.+||+++|++++++. ++..++++|+||||||++++|+++. ++. .+.+
T Consensus 4 ~I~ii-D~g~~n~~si~~al~~~G~~~~v~~------~~~~l~~~D~lilPG~g~~~~~~~~--------~~~---~~~i 65 (211)
T 4gud_A 4 NVVII-DTGCANISSVKFAIERLGYAVTISR------DPQVVLAADKLFLPGVGTASEAMKN--------LTE---RDLI 65 (211)
T ss_dssp CEEEE-CCCCTTHHHHHHHHHHTTCCEEEEC------CHHHHHHCSEEEECCCSCHHHHHHH--------HHH---TTCH
T ss_pred EEEEE-ECCCChHHHHHHHHHHCCCEEEEEC------CHHHHhCCCEEEECCCCCHHHHHHH--------HHh---cChH
Confidence 68876 9999999999999999999998743 3456888999999999999887754 221 2234
Q ss_pred HHHHHCCCceEEEEehhHHHHHhc
Q psy5570 752 NKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 752 ~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+...++ |+|+||||+|||+|++.
T Consensus 66 ~~~~~~-~~PvlGIClG~QlL~~~ 88 (211)
T 4gud_A 66 ELVKRV-EKPLLGICLGMQLLGKL 88 (211)
T ss_dssp HHHHHC-CSCEEEETHHHHTTSSE
T ss_pred HHHHHc-CCCEEEEchhHhHHHHH
Confidence 555664 99999999999999873
No 23
>2yxz_A Thiamin-monophosphate kinase; alpha/beta structure, transferase; 1.90A {Thermus thermophilus}
Probab=99.30 E-value=4.1e-12 Score=137.88 Aligned_cols=95 Identities=11% Similarity=-0.180 Sum_probs=75.1
Q ss_pred CcCceEEEEEecCCcEEEEEEecCCCc----ccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccc
Q psy5570 116 PLADVAVVALVHNDLRGAATSIGEQPI----KGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGR 191 (875)
Q Consensus 116 p~sDaaV~~~~~~~~~g~ams~G~~p~----~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~ 191 (875)
++.|++|++++ ...+++|++..+. +...|||.+++.||+++++||+|+|+.++. + +.+|+
T Consensus 28 ~gdDaavi~~~---~~~lv~ttD~~~~~~~f~~~~~p~~~G~~ava~~lsDlaa~Ga~P~~-~--~~~~~---------- 91 (311)
T 2yxz_A 28 PGDDAGGVWAE---GRAWLLKTDGFLYREVALKGMGPFEVGFRGVAATASDLLAKMGRPLG-F--TLGLF---------- 91 (311)
T ss_dssp TTSSSEEEEET---TEEEEEEEEEEEHHHHCCTTCCHHHHHHHHHHHHHHHHHHTTEEEEE-E--EEEEE----------
T ss_pred CCCCEEEEecC---CCeEEEEeCcCCCccccCCCCCHHHHHHHHHHHHHHHHHHcCChhhh-h--eeeEe----------
Confidence 35699999982 5789999999997 788999999999999999999999986653 4 44465
Q ss_pred ccccCcchhcccccccccchHHhhhhcCCcccCCCCCC
Q psy5570 192 FAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPN 229 (875)
Q Consensus 192 w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm 229 (875)
|+. +++.+++.+. ++||.++|+++|+|+++|..+.
T Consensus 92 ~p~-~~~~~~l~~~--~~Gi~~~~~~~g~~lvGG~t~~ 126 (311)
T 2yxz_A 92 LPE-DLEEGFVLEL--VRGAAEAAKRLGAFLLGGDTNR 126 (311)
T ss_dssp ECT-TCBHHHHHHH--HHHHHHHHHHTTCEEEEEEEEE
T ss_pred CCC-CCCHHHHHHH--HHHHHHHHHHcCCeEEceecCC
Confidence 332 2333444333 9999999999999999988764
No 24
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism, ATP-binding, ligase, nucleotide-binding, biosynthesis; HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Probab=99.27 E-value=1.2e-11 Score=148.75 Aligned_cols=283 Identities=14% Similarity=0.076 Sum_probs=170.8
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccC
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKN 196 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~ 196 (875)
+.||+|++++ +...+++++......+..|||.||+.+|+.++++++|+|+.++. +.++++|. ....
T Consensus 66 gdDaavi~~~--~~~~l~~~ve~h~~p~~~~P~~gg~~~v~~~l~Di~amGA~P~~-~l~~l~~~-----------~~~~ 131 (725)
T 3ac6_A 66 GENAGVVRVG--EGWAVAFKIESHNHPSAVEPFQGAATGVGGILRDIMSMGARPIA-LLDSLRFG-----------PPEE 131 (725)
T ss_dssp TSSSEEEEEE--TTEEEEEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEES-----------CTTS
T ss_pred CCceEEEEeC--CCeEEEEEeCcCCCCcccChHHHHHHHHhhhhhhhhccCChhHh-heeeEEcC-----------CCCC
Confidence 4699999985 45688899988778889999999999999999999999986654 66666552 0012
Q ss_pred cc-hhcccccccccchHHhhhhcCCcccCCCCCCCCCCccccccccccccccccccccccCCCccccCCCcceecceeee
Q psy5570 197 HG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQH 275 (875)
Q Consensus 197 P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkdsm~~~~~~~~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~ 275 (875)
|+ .+.+.+. ++|+.++|+++|+|+|+|.-+... .| .+..+ +...
T Consensus 132 ~~~~~~l~~~--~~Gi~~~~~~~G~~lvgG~t~~~~-----------------------------~~---~~~~~-i~~~ 176 (725)
T 3ac6_A 132 ARSRYLLKGV--VSGIAFYGNAIGVPTVGGDLYFHE-----------------------------GY---RENPL-VNAM 176 (725)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHTCCEEEEEEEECG-----------------------------GG---SSSCE-EEEE
T ss_pred ccHHHHHHHH--HHHHHHHHHHhCCCeeEEEEEEeC-----------------------------Cc---CCCce-EEEE
Confidence 32 3333333 899999999999999987654321 01 00001 1112
Q ss_pred cccEEEEcccccccccccccccCCCCCcceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccccc
Q psy5570 276 AVGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRT 355 (875)
Q Consensus 276 a~g~~v~k~v~~ritp~l~~~~~~sk~~~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~~~ 355 (875)
.+|++-. .
T Consensus 177 ~vG~v~~----~-------------------------------------------------------------------- 184 (725)
T 3ac6_A 177 CLGLLRE----E-------------------------------------------------------------------- 184 (725)
T ss_dssp EEEEEEG----G--------------------------------------------------------------------
T ss_pred EEEEeCh----h--------------------------------------------------------------------
Confidence 2333210 0
Q ss_pred ccccCCCCccCCccccccccccccCCCCcceeeEEeecCCEEEEecccccccCccccccCCcc--cccCC---CCCCCCC
Q psy5570 356 SNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSPL--TSFNH---GIKPDPW 430 (875)
Q Consensus 356 ~~m~~skG~r~~Tr~~~Sk~fr~~G~~pls~~l~~yk~GD~V~I~~~~sv~kg~p~~~~g~~~--~v~~~---G~~p~~~ 430 (875)
.+. +.. . +.||.+.+.|.++-..| .||... ..+.. ...|..
T Consensus 185 --------------~~~-~~~--a------------~~GD~ii~~G~~~g~~G----~gg~~~~~~~~~~~~~~~~p~v- 230 (725)
T 3ac6_A 185 --------------HLK-RSR--A------------SLGRPIYYAGAKTGRDG----IGGAAFASRELKEEKAEDRPAV- 230 (725)
T ss_dssp --------------GCC-CBC--C------------CTTCEEEEEESCBCSCC----C----------------------
T ss_pred --------------hcc-cCC--C------------CCCCEEEEECCCCCCCc----chHHHHHHHhhccccccCCccc-
Confidence 000 000 0 34666544331110001 011100 00010 112220
Q ss_pred cccCchHHHHHHHHHHH-hH---HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchhHHHHhhhhcccc
Q psy5570 431 FYVDVMGKGKVAFNSNS-LV---FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQI 505 (875)
Q Consensus 431 ~~~~~~~~~~~~f~~~~-li---~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~~l~~~~~~~~~~ 505 (875)
+ +-++...+...+.+. ++ .|.++||++. ||+.++.||+ .+++.|++ ||+...+..
T Consensus 231 ~-~g~~~~e~~~~~~~~~l~~~~~i~a~~Di~~gGL~~~l~ema-~~sg~g~~------i~l~~vP~~------------ 290 (725)
T 3ac6_A 231 Q-VGDPFLGKLLMEATLEAIELDLVEGVQDMGAAGLTSSLSELA-HKSGLGVE------LHLDLVPTR------------ 290 (725)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTHHHHHHHHHH-HHTTSEEE------EEGGGSCBS------------
T ss_pred c-cCCHHHHHHHHHHHHHHHhcCCeeEEEeCCCChHHHHHHHHH-HhcCCeEE------EEeccCCCC------------
Confidence 0 112222233333333 33 5789999997 9999999999 88889998 887644310
Q ss_pred chhhhhhhhcchhhhhhccccceee---EecCCHHHHHHHHHhhcCCCCCCCceeecccccCcccccceeeEEEEECCEe
Q psy5570 506 GLLFIYFIVQRTKLCIVQRHEVGLA---FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEP 582 (875)
Q Consensus 506 ~~~~~~~~~~~~~~~~LFsE~~G~v---v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvnseh~~h~~~~~~i~~~g~~ 582 (875)
..+.++++.+|+|..+.+ +.+++.+.+.++++. .++++..||+++.+ ..+.+..+|+.
T Consensus 291 -------~~~~~~~e~~~se~q~~ll~~v~~~~~~~~~~~~~~------~~~~~~vIG~vt~~------~~~~~~~~g~~ 351 (725)
T 3ac6_A 291 -------EEGMTPEELLLSESQERMVLVPKEGKEKALEEVFGR------WGLDCVPVARTIPE------RVFRVLFRGEV 351 (725)
T ss_dssp -------SSSCCHHHHHHCCCSSEEEEEECTTCHHHHHHHHHH------TTCCEEEEEEEESS------SEEEEEETTEE
T ss_pred -------cCCCCHHHHHhcCCcCcEEEEEChHHHHHHHHHHHH------cCCCEEEEEEEEeC------CeEEEEECCcE
Confidence 112244577888886543 777888889998886 67889999999875 35677889998
Q ss_pred eccccHHHHHH
Q psy5570 583 VLNEDLGTLFL 593 (875)
Q Consensus 583 i~~~~l~~L~~ 593 (875)
+.+.+++.|..
T Consensus 352 ~~d~~~~~l~~ 362 (725)
T 3ac6_A 352 VAEVPTEALAE 362 (725)
T ss_dssp EEEEEHHHHHS
T ss_pred EEEcCHHHHhc
Confidence 88888888754
No 25
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=99.26 E-value=2.6e-11 Score=122.80 Aligned_cols=135 Identities=21% Similarity=0.219 Sum_probs=100.0
Q ss_pred ccceEEEEEecCCCCCH--HHHHHHHHHcCCeeEEEEeec---ccc-------------cccCccCccEEEEcCCcCccc
Q psy5570 668 KKVISIAVLREEGINGD--REMSAMAQVCGFEVWDITVQD---LLE-------------NKITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~--~e~~~A~~~aG~~v~~V~~~d---l~~-------------~~~~l~~~d~lvlPGGfS~gD 729 (875)
...+||+|++++|++.. .....+|+++|+++.+++... +.. ++..+.++|+|++|||++. +
T Consensus 21 ~~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~-~ 99 (193)
T 1oi4_A 21 GLSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSP-D 99 (193)
T ss_dssp TCCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHH-H
T ss_pred ccCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCH-H
Confidence 34578999999999943 345789999999999987542 110 1113468999999999542 2
Q ss_pred cccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC-------CCCeEEeccEEecc
Q psy5570 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY-------IKSRVRCPPLKKEK 802 (875)
Q Consensus 730 ~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n-------~~~~f~~~~v~v~~ 802 (875)
.+..++.+.+.|+++.++ |++++|||.|.|+|.++|+|.|++.|.-+. .+.+|+...+++|.
T Consensus 100 ----------~l~~~~~l~~~l~~~~~~-gk~i~aIC~G~~lLa~aGLL~Gr~~Tth~~~~~~l~~~~~~~~~~~~v~Dg 168 (193)
T 1oi4_A 100 ----------YLRGDNRFVTFTRDFVNS-GKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDK 168 (193)
T ss_dssp ----------HHTTSHHHHHHHHHHHHT-TCCEEEETTTHHHHHHHTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEET
T ss_pred ----------HhhhCHHHHHHHHHHHHc-CCEEEEECHHHHHHHHCCccCCCEEEeChhHHHHHHHcCCEEecCCEEEEC
Confidence 233478899999999985 999999999999999999999998777333 34677777776665
Q ss_pred CCceEEEeecce
Q psy5570 803 SGVNITRLSITL 814 (875)
Q Consensus 803 ~~~~~~r~pi~~ 814 (875)
+++.|++-|-+.
T Consensus 169 ~~iiTs~g~~~~ 180 (193)
T 1oi4_A 169 DQLVTSRTPDDL 180 (193)
T ss_dssp TTEEEESSGGGH
T ss_pred CEEEECCCcchH
Confidence 336777766543
No 26
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=99.20 E-value=3.5e-11 Score=120.81 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=98.3
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec--cc-----------------ccccCccCccEEEEcCCcC
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD--LL-----------------ENKITLDRFKGLVFPGGFS 726 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d--l~-----------------~~~~~l~~~d~lvlPGGfS 726 (875)
..+||+|++++|++ +.|+ ..+|+++|+++.+++... +. -++....+||+||+|||..
T Consensus 8 ~~~~v~il~~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~ 86 (190)
T 2vrn_A 8 TGKKIAILAADGVE-EIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGTV 86 (190)
T ss_dssp TTCEEEEECCTTCB-HHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCTH
T ss_pred CCCEEEEEeCCCCC-HHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCch
Confidence 34689999999999 5555 678999999999887531 11 1122336899999999973
Q ss_pred ccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccccc-------CCCCeEEeccEE
Q psy5570 727 YADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQP-------YIKSRVRCPPLK 799 (875)
Q Consensus 727 ~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~-------n~~~~f~~~~v~ 799 (875)
..+. +..++.+.+.|+++.++ |+++.+||+|.++|.++|||.|++.|..+ +.+.+|+...++
T Consensus 87 ~~~~----------~~~~~~l~~~l~~~~~~-gk~i~aiC~G~~~La~aGlL~gr~~Tt~~~~~~~l~~~~~~~~~~~~v 155 (190)
T 2vrn_A 87 NPDK----------LRLEEGAMKFVRDMYDA-GKPIAAICHGPWSLSETGIAQGLKMTSWSSLKRELTLAGAQWVDEECV 155 (190)
T ss_dssp HHHH----------HTTCHHHHHHHHHHHHT-TCCEEEC-CTTHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECCCSCE
T ss_pred hHHH----------HhhCHHHHHHHHHHHHc-CCEEEEECHhHHHHHhCcccCCcEEecCccHHHHHHHcCCeEECCCEE
Confidence 2222 23478899999999985 99999999999999999999999877633 334677777776
Q ss_pred eccCCceEEEeecce
Q psy5570 800 KEKSGVNITRLSITL 814 (875)
Q Consensus 800 v~~~~~~~~r~pi~~ 814 (875)
+|.+ +.|++-|-+.
T Consensus 156 ~Dg~-iiTs~g~~s~ 169 (190)
T 2vrn_A 156 TDKG-VVTSRKPDDL 169 (190)
T ss_dssp EETT-EEECSSGGGH
T ss_pred EcCC-EEEcCChhhH
Confidence 6654 6677766544
No 27
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=99.19 E-value=5.5e-11 Score=125.33 Aligned_cols=141 Identities=13% Similarity=0.087 Sum_probs=100.8
Q ss_pred eEEEEEec-----CCCCCHHHH---HHHHHHcCCeeEEEEeec--------------------------------ccccc
Q psy5570 671 ISIAVLRE-----EGINGDREM---SAMAQVCGFEVWDITVQD--------------------------------LLENK 710 (875)
Q Consensus 671 ~kVaIlv~-----pG~n~~~e~---~~A~~~aG~~v~~V~~~d--------------------------------l~~~~ 710 (875)
+||+|++. +|+. +.|+ +.+|+++|+++.+++... ..-++
T Consensus 24 kkV~ill~~~~~~dG~e-~~E~~~p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~~~~~l~d 102 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSE-IREAVLVMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARGSVYDIEQ 102 (242)
T ss_dssp CEEEEECCCSSTTTSCC-HHHHHHHHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTTCEEEGGG
T ss_pred CEEEEEEecCCCCCCee-HHHHHHHHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccccCCChHH
Confidence 38999997 9998 6666 679999999999987531 01112
Q ss_pred cCccCccEEEEcCCcCccccccch--hHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcC-CCCCCcccccc
Q psy5570 711 ITLDRFKGLVFPGGFSYADALGSA--KGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG-WFSVSTQARQP 787 (875)
Q Consensus 711 ~~l~~~d~lvlPGGfS~gD~l~~s--~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG-lLpg~~~t~~~ 787 (875)
.+.++||+|++|||+...+.|... .+ -..+..++.+.+.+++|.++ |+++.+||+|.++|.++| ||.|++.|..+
T Consensus 103 v~~~~~D~livPGG~~~~~~L~~~~~~~-~~~~~~~~~l~~~lr~~~~~-gk~IaaIC~G~~~La~ag~lL~Gr~~T~~~ 180 (242)
T 3l3b_A 103 IRVEEFDMLVIPGGYGVAKNFSNLFDED-KENDYILPEFKNAVREFYNA-KKPIGAVCISPAVVVALLKDIAKVKVTIGE 180 (242)
T ss_dssp CCGGGCSEEEECCCHHHHHHHBSTTSCC---CCCBCHHHHHHHHHHHHT-TCCEEEETTHHHHHHHHHTTTCCCEECCCC
T ss_pred CCcccCCEEEEcCCcchhhhhhhhhccc-cccccCCHHHHHHHHHHHHc-CCEEEEECHHHHHHHHhCcccCCCEEEecC
Confidence 234679999999998632222110 00 00112378899999999995 999999999999999999 99999977644
Q ss_pred C-------CCCeEEe---ccEEecc-CCceEEEeecce
Q psy5570 788 Y-------IKSRVRC---PPLKKEK-SGVNITRLSITL 814 (875)
Q Consensus 788 n-------~~~~f~~---~~v~v~~-~~~~~~r~pi~~ 814 (875)
+ .+++|++ ..|++|. .++.|++-|...
T Consensus 181 ~~~~~l~~~Ga~~~~~~~~~vVvD~~g~liTs~a~~~~ 218 (242)
T 3l3b_A 181 DSNGLIDKMGGVHVDCPTIKSVKDDVNRIFSCSAYMRN 218 (242)
T ss_dssp ----CHHHHTCEECCCCTTCCEEETTTTEEEECGGGSC
T ss_pred ChHHHHHHCCCEEEcCCCCeEEEECCCCEEECcCcccC
Confidence 3 4688987 5788882 347888866433
No 28
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q* 1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q* 1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q* 1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Probab=99.17 E-value=8.6e-12 Score=112.81 Aligned_cols=65 Identities=17% Similarity=0.135 Sum_probs=59.8
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCC
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSV 301 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk 301 (875)
+++..++++++.+++|+|+||||+.|||+||+|+|++++|+|++||++++++.+--+.|||.+||
T Consensus 32 ~~yk~Gd~VdIk~~~svqKGmPhk~yHGkTG~V~~v~~~AvgV~Vnk~vk~Kri~vr~eHik~sk 96 (96)
T 1vq8_Q 32 EEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTIIVTAAHLRRQE 96 (96)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETTEEEEEEECGGGEEECC
T ss_pred HHcCCCCEEEEEecCCccCCCCcccCCCCCeEEEeECCCEEEEEEeecCCCcEEEeCHhHcccCC
Confidence 45778999999999999999999999999999999999999999999999998777788888775
No 29
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=99.17 E-value=1.6e-10 Score=116.44 Aligned_cols=131 Identities=16% Similarity=0.182 Sum_probs=96.9
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec---cc------------ccccCccCccEEEEcCCcCcccccc
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD---LL------------ENKITLDRFKGLVFPGGFSYADALG 732 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d---l~------------~~~~~l~~~d~lvlPGGfS~gD~l~ 732 (875)
+||+|++++|++ +.|+ ..+|+++|+++.+++... +. -++....+||+|++|||....+
T Consensus 6 kkv~ill~~g~~-~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~--- 81 (190)
T 4e08_A 6 KSALVILAPGAE-EMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSN--- 81 (190)
T ss_dssp CEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHH---
T ss_pred cEEEEEECCCch-HHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHH---
Confidence 489999999998 6665 579999999999997642 11 1122335799999999963222
Q ss_pred chhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCC------CeEE-eccEEeccCCc
Q psy5570 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIK------SRVR-CPPLKKEKSGV 805 (875)
Q Consensus 733 ~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~------~~f~-~~~v~v~~~~~ 805 (875)
.+..++.+.+.|+++.++ ++++.+||+|.++|.++|||.|++.|..++.. ..|+ ++.++++.+ +
T Consensus 82 -------~~~~~~~~~~~l~~~~~~-~k~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~~~~v~dg~-i 152 (190)
T 4e08_A 82 -------AMGESSLVGDLLRSQESG-GGLIAAICAAPTVLAKHGVASGKSLTSYPSMKPQLVNNYSYVDDKTVVKDGN-L 152 (190)
T ss_dssp -------HHHHCHHHHHHHHHHHHT-TCEEEEETTTHHHHHHTTCSTTCEECCCGGGGGGSSSSSEECSSCSEEEETT-E
T ss_pred -------HhhhCHHHHHHHHHHHHC-CCEEEEECHHHHHHHHCCCcCCCeEEeCcCHHHHHhcCCcccCCCcEEEECC-E
Confidence 234578899999999985 99999999999999999999999877744432 3444 355665664 7
Q ss_pred eEEEeecce
Q psy5570 806 NITRLSITL 814 (875)
Q Consensus 806 ~~~r~pi~~ 814 (875)
.|++-|-+-
T Consensus 153 iTs~g~~a~ 161 (190)
T 4e08_A 153 ITSRGPGTA 161 (190)
T ss_dssp EEECSGGGH
T ss_pred EECCChHHH
Confidence 777776543
No 30
>2z1e_A Hydrogenase expression/formation protein HYPE; [NIFE] hydrogenase maturation, ATPase, transferase; 1.55A {Thermococcus kodakarensis} SCOP: d.79.4.1 d.139.1.1 PDB: 2z1f_A
Probab=99.14 E-value=2.4e-11 Score=133.33 Aligned_cols=104 Identities=13% Similarity=0.038 Sum_probs=64.3
Q ss_pred ceeecccccccceeEeccccCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccCHH-----HHHHHHHHHHHhhccc
Q psy5570 91 FLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPK-----RGARMAVAEALTNLVF 165 (875)
Q Consensus 91 ~l~~qyD~~Vgg~tv~~P~vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy-----~GA~~AV~EAl~Nlva 165 (875)
++.++||+.++.++++ | ++.|++|++++ ...+++|++... .||| .-++.||++++++|+|
T Consensus 23 ~~~~~~~~~~~~~~~~----~----~gdDaav~~~~---~~~lv~ttD~~~----~~~~~~~~~~iG~~ava~~lsDl~a 87 (338)
T 2z1e_A 23 VILKTLTLKSAGGIGL----D----ALDDGATIPFG---DKHIVFTIDGHT----VKPLFFPGGDIGRLAVSGTVNDLAV 87 (338)
T ss_dssp --------------------------CCSCEEEEET---TEEEEEEEEEEC----CSSSEETTEEHHHHHHHHHHHHHHT
T ss_pred HHHhhcCcccCcccCc----C----CCCceEEEEeC---CCEEEEEeCCCc----cCccccCCccHHHHHHHHHHHHHHH
Confidence 3446778777666653 3 34699999985 357899998663 3444 3499999999999999
Q ss_pred cCCcccccceeccccccccccCCcccccccCcc--hhcccccccccchHHhhhhcCCcccCCCC
Q psy5570 166 AKISDLKFLFASSRSIHIFHYSFSGRFAFKNHG--IYDHLDRSQCLPIRYVDDNNKITEDYPMN 227 (875)
Q Consensus 166 ~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~P~--l~~a~~a~~~~~l~d~~~~lgiP~i~gkd 227 (875)
+|+.++ -+.++++| +.+.|. +.++ ++||.++|+++|+|++||.-
T Consensus 88 ~Ga~P~-~~~~~l~~------------p~~~~~~~l~~~-----~~Gi~~~~~~~g~~lvGGdt 133 (338)
T 2z1e_A 88 MGAEPI-ALANSMII------------GEGLDMEVLKRV-----LKSMDETAREVPVPIVTGDT 133 (338)
T ss_dssp TTCEEE-EEEEEEEE------------ETTCCHHHHHHH-----HHHHHHHHHHTTCCEEEEEE
T ss_pred cCCchh-HhEEEEec------------CCCCCHHHHHHH-----HHHHHHHHHHcCCEEECcEE
Confidence 998665 36566554 323332 4455 99999999999999996543
No 31
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=99.13 E-value=1.7e-10 Score=117.86 Aligned_cols=131 Identities=14% Similarity=0.158 Sum_probs=99.1
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec-----cc--------c----cccCccCccEEEEcCCcCcccc
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD-----LL--------E----NKITLDRFKGLVFPGGFSYADA 730 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d-----l~--------~----~~~~l~~~d~lvlPGGfS~gD~ 730 (875)
+||+|++++|++ +.|+ ..+|+++|+++.+++... +. . ++....+||+|++|||....+.
T Consensus 3 ~kV~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~ 81 (205)
T 2ab0_A 3 ASALVCLAPGSE-ETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAEC 81 (205)
T ss_dssp CEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHH
T ss_pred cEEEEEEcCCCc-HHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHH
Confidence 489999999997 6666 568999999999987642 10 0 1123467999999999642222
Q ss_pred ccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhH-HHHHhcCCCCCCccccccCC-----CCeEEeccEEeccCC
Q psy5570 731 LGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGC-QLMNLLGWFSVSTQARQPYI-----KSRVRCPPLKKEKSG 804 (875)
Q Consensus 731 l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGf-QiL~elGlLpg~~~t~~~n~-----~~~f~~~~v~v~~~~ 804 (875)
+..++.+.+.|+++.++ |+++.+||+|. ++|.++|||.|++.|..++. ..+|....+++|.+
T Consensus 82 ----------l~~~~~l~~~l~~~~~~-gk~i~aiC~G~~~lLa~aGlL~G~~~T~~~~~~~~~~~~~~~~~~vv~Dg~- 149 (205)
T 2ab0_A 82 ----------FRDSTLLVETVKQFHRS-GRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWLDKRVVWDAR- 149 (205)
T ss_dssp ----------HHHCHHHHHHHHHHHHT-TCEEEEETHHHHHHTTTTTSSSSSCBCCCGGGGGGSCTTTBCCCSEEEETT-
T ss_pred ----------hccCHHHHHHHHHHHHc-CCEEEEECHhHHHHHHHCCccCCCeEEeCccHHHHccCCEEecCCEEEeCC-
Confidence 23478899999999985 99999999999 99999999999987774443 24666677777765
Q ss_pred c--eEEEeecce
Q psy5570 805 V--NITRLSITL 814 (875)
Q Consensus 805 ~--~~~r~pi~~ 814 (875)
+ .|++-|-+.
T Consensus 150 i~viTs~g~~s~ 161 (205)
T 2ab0_A 150 VKLLTSQGPGTA 161 (205)
T ss_dssp TTEEEECSGGGH
T ss_pred cCeEECcChhhH
Confidence 6 888876654
No 32
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=99.13 E-value=2e-10 Score=116.34 Aligned_cols=131 Identities=16% Similarity=0.123 Sum_probs=97.4
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec---cc--------c----ccc-CccCccEEEEcCCcCccccc
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD---LL--------E----NKI-TLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d---l~--------~----~~~-~l~~~d~lvlPGGfS~gD~l 731 (875)
+||+|++++|++ +.|+ ..+|+++|+++.+++... +. . ++. +..+||+|++|||....+
T Consensus 4 ~~v~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~-- 80 (197)
T 2rk3_A 4 KRALVILAKGAE-EMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQ-- 80 (197)
T ss_dssp CEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHH--
T ss_pred CEEEEEECCCCc-HHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHH--
Confidence 489999999998 6555 668999999999987531 11 1 111 337899999999963212
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCC-------C-CeEEeccEEeccC
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYI-------K-SRVRCPPLKKEKS 803 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~-------~-~~f~~~~v~v~~~ 803 (875)
.+..++.+.+.|+++.++ ++++.+||.|.++|.++|+|.|++.|..++. . .++.++.++++.+
T Consensus 81 --------~l~~~~~~~~~l~~~~~~-gk~i~aiC~G~~~La~aGll~G~~~T~~~~~~~~l~~~~~~~~~~~~~v~Dg~ 151 (197)
T 2rk3_A 81 --------NLSESAAVKEILKEQENR-KGLIATICAGPTALLAHEIGFGSKVTTHPLAKDKMMNGGHYTYSENRVEKDGL 151 (197)
T ss_dssp --------HHHHCHHHHHHHHHHHHT-TCEEEEETTTHHHHHHTTCSTTCEECCCGGGHHHHTTTSCSEECCCSEEEETT
T ss_pred --------HhhhCHHHHHHHHHHHHc-CCEEEEECHHHHHHHHCCCCCCCEEEeCCcHHHHHhhcCCceeCCCCEEEeCC
Confidence 234478899999999985 9999999999999999999999987764432 1 2366666666665
Q ss_pred CceEEEeecce
Q psy5570 804 GVNITRLSITL 814 (875)
Q Consensus 804 ~~~~~r~pi~~ 814 (875)
+.|++-|-+-
T Consensus 152 -iiTs~g~~a~ 161 (197)
T 2rk3_A 152 -ILTSRGPGTS 161 (197)
T ss_dssp -EEEECSGGGH
T ss_pred -EEECCCHHHH
Confidence 7777777654
No 33
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.11 E-value=2.9e-10 Score=112.78 Aligned_cols=130 Identities=18% Similarity=0.220 Sum_probs=92.1
Q ss_pred eEEEEEecC---C---CCCHHHHHHHHHHcCCeeEEEEeec---c------------ccccc--CccCccEEEEcCC--c
Q psy5570 671 ISIAVLREE---G---INGDREMSAMAQVCGFEVWDITVQD---L------------LENKI--TLDRFKGLVFPGG--F 725 (875)
Q Consensus 671 ~kVaIlv~p---G---~n~~~e~~~A~~~aG~~v~~V~~~d---l------------~~~~~--~l~~~d~lvlPGG--f 725 (875)
+||+|+++| | ++ +.|+. .++|+++.+++... + .-.+. ++.+||+|++||| .
T Consensus 3 ~~v~ill~~~~~g~~~~~-~~e~~---~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpGG~~~ 78 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQ-YLEAF---FENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSCGDAV 78 (175)
T ss_dssp CEEEEEECSSBCHHHHHH-HHHHH---HHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEECCTTG
T ss_pred cEEEEEEecCcCCCccch-hhhee---eeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECCCcCc
Confidence 589999999 7 44 33433 38899999987641 1 11122 3478999999999 5
Q ss_pred CccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCC-----CeEEeccEEe
Q psy5570 726 SYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIK-----SRVRCPPLKK 800 (875)
Q Consensus 726 S~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~-----~~f~~~~v~v 800 (875)
...+.+.. ...++.+.+.++++.++ |+++.+||+|.++|.++|||.|++.|..++.. .+|.++.+++
T Consensus 79 ~~~~~l~~-------~~~~~~~~~~l~~~~~~-gk~i~aiC~G~~~La~aGlL~G~~~T~~~~~~~~l~~~~~~~~~~v~ 150 (175)
T 3cne_A 79 PVFQQYAN-------QPYNVDLMEVIKTFGEK-GKMMIGHCAGAMMFDFTGITKGKKVAVHPLAKPAIQNGIATDEKSEI 150 (175)
T ss_dssp GGGGGCTT-------CHHHHHHHHHHHHHHHT-TCEEEEETTHHHHHHHTTTTTTCEEECCGGGGGGCCSSEEESSSEEE
T ss_pred ccHHHHhh-------cccCHHHHHHHHHHHHC-CCEEEEECHHHHHHHHCCCcCCCEEEeCccHHHHhhcCEEeCCCEEE
Confidence 22344431 11377899999999985 99999999999999999999999876633321 5677777776
Q ss_pred ccCCceEEEeecc
Q psy5570 801 EKSGVNITRLSIT 813 (875)
Q Consensus 801 ~~~~~~~~r~pi~ 813 (875)
|.+ +.|.+-|-+
T Consensus 151 Dg~-iiTs~g~~~ 162 (175)
T 3cne_A 151 DGN-FFTAQDENT 162 (175)
T ss_dssp ETT-EEEESSGGG
T ss_pred eCC-EEeCCChHH
Confidence 665 666665543
No 34
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.10 E-value=6.5e-11 Score=120.11 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=69.5
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcC-----CeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhch
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCG-----FEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNE 745 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG-----~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~ 745 (875)
|||+|| ++|.++..+..++|+++| +++.++.. +.+ .++|+||||||+++++.+. | +++.
T Consensus 1 m~I~ii-d~~~g~~~s~~~~l~~~G~~~~~~~~~~~~~------~~~-~~~dglilpG~g~~~~~~~----~----l~~~ 64 (201)
T 1gpw_B 1 MRIGII-SVGPGNIMNLYRGVKRASENFEDVSIELVES------PRN-DLYDLLFIPGVGHFGEGMR----R----LREN 64 (201)
T ss_dssp CEEEEE-CCSSSCCHHHHHHHHHHSTTBSSCEEEEECS------CCS-SCCSEEEECCCSCSHHHHH----H----HHHT
T ss_pred CEEEEE-ecCCchHHHHHHHHHHcCCCCCceEEEEECC------Ccc-cCCCEEEECCCCcHHHHHH----H----HHhh
Confidence 689988 677666799999999999 88877653 224 7899999999888766432 2 2334
Q ss_pred hHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 746 GIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 746 ~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+.+.+++++++ ++|+||||.|+|+|.++
T Consensus 65 ~~~~~i~~~~~~-~~PilGIC~G~Qll~~~ 93 (201)
T 1gpw_B 65 DLIDFVRKHVED-ERYVVGVCLGMQLLFEE 93 (201)
T ss_dssp TCHHHHHHHHHT-TCEEEEETHHHHTTSSE
T ss_pred CHHHHHHHHHHc-CCeEEEEChhHHHHHHh
Confidence 578899999885 99999999999999985
No 35
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=99.10 E-value=2.7e-10 Score=116.74 Aligned_cols=132 Identities=17% Similarity=0.179 Sum_probs=100.0
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec---cc------------ccccCccCccEEEEcCCcCcccccc
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD---LL------------ENKITLDRFKGLVFPGGFSYADALG 732 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d---l~------------~~~~~l~~~d~lvlPGGfS~gD~l~ 732 (875)
+||+|++++|++ +.|+ ..+|+++|+++.+++... +. -++....+||+|++|||....+.
T Consensus 10 ~~v~ill~~g~~-~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~-- 86 (208)
T 3ot1_A 10 KRILVPVAHGSE-EMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQA-- 86 (208)
T ss_dssp CEEEEEECTTCC-HHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHH--
T ss_pred CeEEEEECCCCc-HHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHH--
Confidence 489999999999 6665 678999999999998652 11 11223468999999999732222
Q ss_pred chhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhH-HHHHhcCCCCCCccccccCC-----CCeEEeccEEecc-CCc
Q psy5570 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGC-QLMNLLGWFSVSTQARQPYI-----KSRVRCPPLKKEK-SGV 805 (875)
Q Consensus 733 ~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGf-QiL~elGlLpg~~~t~~~n~-----~~~f~~~~v~v~~-~~~ 805 (875)
+..++.+.+.|+++.++ |+++.+||+|. ++|.++|||.|++.|..+.. ..+|..+.++++. .++
T Consensus 87 --------l~~~~~l~~~l~~~~~~-gk~i~aiC~G~a~~La~aGlL~g~~~T~~~~~~~~l~~~~~~~~~vv~d~dg~i 157 (208)
T 3ot1_A 87 --------FADSTALLALIDAFSQQ-GKLVAAICATPALVFAKQQKFVGARMTCHPNFFDHIPSERLSRQRVCYYATQHL 157 (208)
T ss_dssp --------HHTCHHHHHHHHHHHHT-TCEEEEETTHHHHTTTTTTCSTTCCBCCCGGGGGGSCTTTBCCSSEEEEGGGTE
T ss_pred --------HhhCHHHHHHHHHHHHc-CCEEEEEChhHHHHHHHCCccCCCEEEECccHHHHccCCccccCcEEEeCCCCE
Confidence 23578999999999985 99999999999 99999999999987774433 2567777777753 237
Q ss_pred eEEEeecce
Q psy5570 806 NITRLSITL 814 (875)
Q Consensus 806 ~~~r~pi~~ 814 (875)
.|++-|-+.
T Consensus 158 iTs~g~~a~ 166 (208)
T 3ot1_A 158 LTSQGPGTA 166 (208)
T ss_dssp EEECSGGGH
T ss_pred EECCCHHHH
Confidence 788777654
No 36
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.09 E-value=9.8e-11 Score=118.96 Aligned_cols=89 Identities=17% Similarity=0.291 Sum_probs=72.2
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||+|+ +.|.++..+..++|+++|+++.++.. +..++++|+||||||++..+.+.. +++..+.+.
T Consensus 3 ~~I~ii-d~~~~~~~~~~~~l~~~G~~~~~~~~------~~~l~~~d~lil~G~g~~~~~~~~--------l~~~~~~~~ 67 (200)
T 1ka9_H 3 MKALLI-DYGSGNLRSAAKALEAAGFSVAVAQD------PKAHEEADLLVLPGQGHFGQVMRA--------FQESGFVER 67 (200)
T ss_dssp CEEEEE-CSSCSCHHHHHHHHHHTTCEEEEESS------TTSCSSCSEEEECCCSCHHHHHHT--------TSSSCTHHH
T ss_pred cEEEEE-eCCCccHHHHHHHHHHCCCeEEEecC------hHHcccCCEEEECCCCcHHHHHHH--------HHhcCHHHH
Confidence 589888 88888899999999999999887642 335789999999997776554321 344567889
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+++++++ |+|+||||.|+|+|.++
T Consensus 68 i~~~~~~-~~PilGIC~G~Qll~~~ 91 (200)
T 1ka9_H 68 VRRHLER-GLPFLGICVGMQVLYEG 91 (200)
T ss_dssp HHHHHHT-TCCEEECTHHHHTTSSE
T ss_pred HHHHHHc-CCeEEEEcHHHHHHHHh
Confidence 9999885 99999999999999997
No 37
>3fd5_A Selenide, water dikinase 1; selenophosphate synthetase, SELD, ATP-binding, nucleotide-binding, selenium, transferase; HET: AP2; 1.90A {Homo sapiens} PDB: 3fd6_A*
Probab=99.08 E-value=8.5e-11 Score=132.07 Aligned_cols=94 Identities=12% Similarity=-0.051 Sum_probs=70.9
Q ss_pred CcCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccccccc
Q psy5570 116 PLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK 195 (875)
Q Consensus 116 p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g 195 (875)
++.|++|++++ ++...+++|++... ....|||.+++.||++++++|+|+|+.++.-+.++++|- .+
T Consensus 68 ~GdDaAV~~~~-~~~~~lv~ttD~f~-p~~~dP~~~G~~Ava~~lsDiaAmGA~P~~~~l~~l~~p------------~~ 133 (394)
T 3fd5_A 68 IGMDTCVIPLR-HGGLSLVQTTDYIY-PIVDDPYMMGRIACANVLSDLYAMGVTECDNMLMLLGVS------------NK 133 (394)
T ss_dssp TTSSSEEEECS-STTCEEEEEEEEEC-CCSSCHHHHHHHHHHHHHHHHHHTTCCCCSEEEEEEEEE------------TT
T ss_pred CCCCeeEEecC-CCCcEEEEEeeccC-CcCCCHHHHHHHHHHHHHHHHHHCCchhHHHHhhhEecC------------CC
Confidence 44699999985 33678999999884 467899999999999999999999986654334555552 11
Q ss_pred -Ccc--hhcccccccccchHHhhhhcCCcccCC
Q psy5570 196 -NHG--IYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 196 -~P~--l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
.|+ .+.+.+. ++||.++|+++|+|+|||
T Consensus 134 ~~~~~~~~~l~~i--~~Gi~~~~~~~gv~lvGG 164 (394)
T 3fd5_A 134 MTDRERDKVMPLI--IQGFKDAAEEAGTSVTGG 164 (394)
T ss_dssp SCHHHHHHHHHHH--HHHHHHHHHHTTCCEEEE
T ss_pred CChhHHHHHHHHH--HHHHHHHHHHhCCcEEee
Confidence 232 2333333 999999999999999964
No 38
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=99.08 E-value=8e-11 Score=129.87 Aligned_cols=94 Identities=6% Similarity=-0.208 Sum_probs=66.2
Q ss_pred cCceEEEEEec--CCcEEEEEEecCCCcccc-----cCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCc
Q psy5570 117 LADVAVVALVH--NDLRGAATSIGEQPIKGL-----VDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFS 189 (875)
Q Consensus 117 ~sDaaV~~~~~--~~~~g~ams~G~~p~~~~-----~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~ 189 (875)
+.|++|+.++. .....++++++.-..... -+|+..++.||+++++||+|+|+.++. +.+++++
T Consensus 41 GdD~av~~~~~~~~~~~~lv~stD~~~~~~~~~~~~~~~~~iG~~ava~~vsDlaa~Ga~P~~-~~~~l~~--------- 110 (348)
T 2z01_A 41 GGFGGLFDLSALGYRQPVLISGTDGVGTKLKLAFLLDRHDTIGIDCVAMCVNDIIVQGAEPLF-FLDYIAC--------- 110 (348)
T ss_dssp ----CEECGGGGCCSSEEEEEEEEECCTHHHHHHHHTCCSSHHHHHHHHHHHHHHTTTCEEEE-EEEEEEE---------
T ss_pred CCccEEEecCcccCCCcceeeecccccchHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCChHH-HHHHhcC---------
Confidence 46999998752 124568888887765332 278999999999999999999986655 5555543
Q ss_pred ccccccCcc-hhcccccccccchHHhhhhcCCcccCCCCC
Q psy5570 190 GRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNP 228 (875)
Q Consensus 190 ~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkds 228 (875)
+.-+|+ +.++ ++||.++|+++|+|+|||.-+
T Consensus 111 ---~~~~~~~l~~i-----~~Gi~~~~~~~g~~lvGGdt~ 142 (348)
T 2z01_A 111 ---GKAVPEKIAAI-----VKGVADGCVEAGCALIGGETA 142 (348)
T ss_dssp ---SSCCHHHHHHH-----HHHHHHHHHHHTCEEEECCEE
T ss_pred ---CCCCHHHHHHH-----HHHHHHHHHHcCCEEECceee
Confidence 111233 5565 999999999999999987554
No 39
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=99.05 E-value=6.4e-10 Score=117.55 Aligned_cols=131 Identities=11% Similarity=0.045 Sum_probs=99.4
Q ss_pred eEEEEEecC------------CCCCHHHH---HHHHHHcCCeeEEEEee-----c-------------------------
Q psy5570 671 ISIAVLREE------------GINGDREM---SAMAQVCGFEVWDITVQ-----D------------------------- 705 (875)
Q Consensus 671 ~kVaIlv~p------------G~n~~~e~---~~A~~~aG~~v~~V~~~-----d------------------------- 705 (875)
+||+|++.. |+. +.|+ +.+|+++|++|++++.. |
T Consensus 10 kkvlvvlt~~~~~~~~~g~~tG~~-~~E~~~p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~ 88 (247)
T 3n7t_A 10 RKALLAITSAHPPFWPDGKRTGLF-FSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFM 88 (247)
T ss_dssp SEEEEECCCCCCBCSTTSCBCCBC-HHHHHHHHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHHH
T ss_pred CeEEEEECCCCcccCCCCCCCccc-HHHHHHHHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHHH
Confidence 478888764 222 4555 77999999999998753 1
Q ss_pred -------ccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc---
Q psy5570 706 -------LLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL--- 775 (875)
Q Consensus 706 -------l~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el--- 775 (875)
+.-++.+.++||+|++|||....+.++ .++.+.+.+++|.++ |++|.+||+|.++|.++
T Consensus 89 ~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~~~l~----------~~~~l~~~l~~~~~~-gk~iaaIC~Gp~~La~a~~~ 157 (247)
T 3n7t_A 89 EKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFP----------HAKHLQNIAQDIYKR-GGVIGAVCHGPAMLPGIHDE 157 (247)
T ss_dssp HHHHHCCEEGGGSCGGGCSEEEECCSTTHHHHGG----------GCHHHHHHHHHHHHT-TCEEEEETTGGGGGGGCBCT
T ss_pred HHHhccCCCHHHCChhhCCEEEEeCCCchhhhcc----------cCHHHHHHHHHHHHc-CCEEEEEChHHHHHHHhhcc
Confidence 011133456799999999985323333 478899999999995 99999999999999999
Q ss_pred ---CCCCCCccccccC--------------------------CCCeEEe------ccEEeccCCceEEEeecce
Q psy5570 776 ---GWFSVSTQARQPY--------------------------IKSRVRC------PPLKKEKSGVNITRLSITL 814 (875)
Q Consensus 776 ---GlLpg~~~t~~~n--------------------------~~~~f~~------~~v~v~~~~~~~~r~pi~~ 814 (875)
|||.|++.|..++ .+++|+. ..|++|.+ +.|.+-|-+.
T Consensus 158 ~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~-lITg~~p~sa 230 (247)
T 3n7t_A 158 NGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGR-IVTGANPQSA 230 (247)
T ss_dssp TSSBTTTTCEECCCCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETT-EEEECSGGGH
T ss_pred cCCccccCceecCCCcHHHhhhhhhhhccccchhhHHHHHHHCCCEEecCCcCCCceEEEcCC-EEECCChHHH
Confidence 9999999887655 3578876 36777775 8899988776
No 40
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=99.01 E-value=9.2e-10 Score=113.36 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=98.0
Q ss_pred eEEEEEec----------CCCCCHHHH---HHHHHHcCCeeEEEEeec--ccc-------------------------cc
Q psy5570 671 ISIAVLRE----------EGINGDREM---SAMAQVCGFEVWDITVQD--LLE-------------------------NK 710 (875)
Q Consensus 671 ~kVaIlv~----------pG~n~~~e~---~~A~~~aG~~v~~V~~~d--l~~-------------------------~~ 710 (875)
+||+|+++ +|+. ..|+ ..+|+++|+++.+++... +.. ++
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~-~~e~~~p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 84 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLW-LEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSK 84 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBC-HHHHHHHHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSBEECCG
T ss_pred ceEEEEECCcccccCCCCCcee-HHHHHHHHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCCCChHH
Confidence 38999999 8888 5554 668999999999997641 110 11
Q ss_pred cCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcC------CCCCCccc
Q psy5570 711 ITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG------WFSVSTQA 784 (875)
Q Consensus 711 ~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG------lLpg~~~t 784 (875)
....+||+|++|||....+.+ ..++.+.+.|++|.++ +++|.+||+|.++|.++| ||.|++.|
T Consensus 85 ~~~~~~D~livpGG~~~~~~l----------~~~~~l~~~l~~~~~~-~k~iaaiC~G~~~La~ag~~~g~~lL~Gr~~T 153 (224)
T 1u9c_A 85 DDAHGFDAIFLPGGHGTMFDF----------PDNETLQYVLQQFAED-GRIIAAVCHGPSGLVNATYKDGTPIVKGKTVT 153 (224)
T ss_dssp GGGSSCSEEEECCCTTHHHHS----------TTCHHHHHHHHHHHHT-TCEEEEETTGGGGGTTCBCTTSCBTTTTCEEC
T ss_pred cChhhCCEEEECCCcchHHHh----------hcCHHHHHHHHHHHHC-CCEEEEEChHHHHHHHccccCCCceecCcEEe
Confidence 123579999999997532223 3478899999999985 999999999999999999 99999877
Q ss_pred ccc----------------------CCCCeEEecc-----EEeccCCceEEEeecce
Q psy5570 785 RQP----------------------YIKSRVRCPP-----LKKEKSGVNITRLSITL 814 (875)
Q Consensus 785 ~~~----------------------n~~~~f~~~~-----v~v~~~~~~~~r~pi~~ 814 (875)
..+ +.+.+|+... +++|.+ +.|.+-|-+-
T Consensus 154 ~~~~~~~~~~~~~~~~p~~~~~~l~~~g~~~~~~~~~~~~vv~Dg~-liTs~g~~s~ 209 (224)
T 1u9c_A 154 SFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGN-LITGQNPQSS 209 (224)
T ss_dssp CSCHHHHHHHTCGGGSSSCHHHHHHHTTCEECCCSTTSCCEEEETT-EEEECSGGGH
T ss_pred cCCCHHHhhccccccCCccHHHHHHHcCCEEecCCCCCccEEEeCC-EEECCChhhH
Confidence 743 2356787765 666765 7788776554
No 41
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=99.01 E-value=7.4e-10 Score=123.83 Aligned_cols=132 Identities=17% Similarity=0.183 Sum_probs=99.3
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEee------------------------------cccccccCccC
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQ------------------------------DLLENKITLDR 715 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~------------------------------dl~~~~~~l~~ 715 (875)
..+||+|++++|++ +.|+ ..+|+++|+++.+++.+ |..-++..+.+
T Consensus 204 ~~~ki~ill~dg~~-~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 282 (396)
T 3uk7_A 204 ANKRILFLCGDYME-DYEVKVPFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFDDLVSSS 282 (396)
T ss_dssp CCCEEEEECCTTEE-HHHHHHHHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred ccceEEEEecCCCc-chhHHHHHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHHHCCccc
Confidence 34589999999999 6665 66899999999988642 11111223568
Q ss_pred ccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC-------
Q psy5570 716 FKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY------- 788 (875)
Q Consensus 716 ~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n------- 788 (875)
||+|++|||++ .+.+ ..++.+.+.++++.++ ++++.+||+|.++|.++|||+|++.|..+.
T Consensus 283 ~D~livpGg~~-~~~~----------~~~~~~~~~l~~~~~~-~~~i~aiC~g~~~La~aGlL~g~~~T~~~~~~~~~~~ 350 (396)
T 3uk7_A 283 YDALVIPGGRA-PEYL----------ALNEHVLNIVKEFMNS-EKPVASICHGQQILAAAGVLKGRKCTAYPAVKLNVVL 350 (396)
T ss_dssp CSEEEECCBSH-HHHH----------TTCHHHHHHHHHHHHT-TCCEEEEGGGHHHHHHTTTTTTCEECCCGGGHHHHHH
T ss_pred CCEEEECCCcc-hhhh----------ccCHHHHHHHHHHHHC-CCEEEEEchHHHHHHHcCCcCCCEEecCccHHHHHHH
Confidence 99999999974 3333 3478899999999985 999999999999999999999998776333
Q ss_pred CCCeEEecc----EEeccCCceEEEeecce
Q psy5570 789 IKSRVRCPP----LKKEKSGVNITRLSITL 814 (875)
Q Consensus 789 ~~~~f~~~~----v~v~~~~~~~~r~pi~~ 814 (875)
.+.+|++.. +++|.+ +.|++-|-+.
T Consensus 351 ~~~~~~~~~~~~~~v~Dg~-iiTs~g~~~~ 379 (396)
T 3uk7_A 351 GGGTWLEPDPIDRCFTDGN-LVTGAAWPGH 379 (396)
T ss_dssp TTCEECCCSSTTCEEEETT-EEEESSGGGH
T ss_pred CCCEEEcCCCceeEEEcCC-EEECCCchhH
Confidence 346777653 666664 7777766544
No 42
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=99.00 E-value=1.7e-09 Score=111.17 Aligned_cols=126 Identities=10% Similarity=0.092 Sum_probs=95.7
Q ss_pred eEEEEEecCCCCCHH--HHHHHHHHc-CCeeEEEEeec-c------------cccccCccCccEEEEcCCcCccccccch
Q psy5570 671 ISIAVLREEGINGDR--EMSAMAQVC-GFEVWDITVQD-L------------LENKITLDRFKGLVFPGGFSYADALGSA 734 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~--e~~~A~~~a-G~~v~~V~~~d-l------------~~~~~~l~~~d~lvlPGGfS~gD~l~~s 734 (875)
+||+|+++||++... ..+.+|+++ |+++.+++.+. + .-++. .+++|+|++|||.+. +. .
T Consensus 4 ~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~-~~~~D~livpGG~~~-~~--~- 78 (206)
T 3f5d_A 4 KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLE-PANFNLLVMIGGDSW-SN--D- 78 (206)
T ss_dssp EEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSS-CSCCSEEEECCBSCC-CC--C-
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhC-CcCCCEEEEcCCCCh-hh--c-
Confidence 479999999999432 457888888 99999987531 1 11111 347999999999853 22 2
Q ss_pred hHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccc--cc--------CCCCeEEeccEEeccCC
Q psy5570 735 KGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQAR--QP--------YIKSRVRCPPLKKEKSG 804 (875)
Q Consensus 735 ~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~--~~--------n~~~~f~~~~v~v~~~~ 804 (875)
++.+.+.|+++.++ ++++.+||.|.++|.++|||.|++.|. .+ +.+.+|.++.+++|.+
T Consensus 79 ---------~~~l~~~l~~~~~~-gk~iaaiC~G~~~La~aGLL~Gr~aTthw~~~~~~~~~~~~~~~~~~~~~V~Dg~- 147 (206)
T 3f5d_A 79 ---------NKKLLHFVKTAFQK-NIPIAAICGAVDFLAKNGLLNNHSHTGNFVYLWKDYKQYKPISSFVEKQAVRDKN- 147 (206)
T ss_dssp ---------CHHHHHHHHHHHHT-TCCEEEETHHHHHHHHTTTTTTSCBCCSCGGGGTTCTTCCCSSCBCCSSEEEETT-
T ss_pred ---------CHHHHHHHHHHHHc-CCEEEEECHHHHHHHHcCCCCCCEEEccCHHHhhhhHhhcCCCeEccCCEEEECC-
Confidence 67899999999985 999999999999999999999998776 22 2246677777777775
Q ss_pred ceEEEeec
Q psy5570 805 VNITRLSI 812 (875)
Q Consensus 805 ~~~~r~pi 812 (875)
+.|++-|-
T Consensus 148 iiTs~G~a 155 (206)
T 3f5d_A 148 LVTANGTA 155 (206)
T ss_dssp EEEECTTC
T ss_pred EEECCCch
Confidence 77777763
No 43
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=99.00 E-value=8.6e-10 Score=116.33 Aligned_cols=115 Identities=12% Similarity=0.070 Sum_probs=90.1
Q ss_pred HHHHHHcCCeeEEEEeec---c---------------------------------cccccCccCccEEEEcCCcCccccc
Q psy5570 688 SAMAQVCGFEVWDITVQD---L---------------------------------LENKITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 688 ~~A~~~aG~~v~~V~~~d---l---------------------------------~~~~~~l~~~d~lvlPGGfS~gD~l 731 (875)
+.+|+++|++|++++... + .-++.+.++||+|++|||....+.+
T Consensus 35 ~~~l~~aG~~V~iaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~~~l 114 (244)
T 3kkl_A 35 FDTFEKHGFEVDFVSETGGFGWDEHYLPKSFIGGEDKMNFETKNSAFNKALARIKTANEVNASDYKVFFASAGHGALFDY 114 (244)
T ss_dssp HHHHHTTTCEEEEEESSSCCCBCTTC--------------------CHHHHHTCEEGGGCCGGGCSEEEECCSTTHHHHG
T ss_pred HHHHHHCCCEEEEEeCCCCCCcCCccccccccCHHHHHHHHHhhHHHHHHhcCCCChHHCCHhhCCEEEEcCCCchhhhc
Confidence 779999999999997531 0 1113345689999999998632333
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc-------CCCCCCccccccC----------------
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL-------GWFSVSTQARQPY---------------- 788 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el-------GlLpg~~~t~~~n---------------- 788 (875)
+ .++.+.+.|++|.++ |++|.+||+|.++|.++ |||.|++.|..++
T Consensus 115 ~----------~~~~l~~~l~~~~~~-gk~iaaIC~G~~~La~a~~~~~g~gll~G~~~T~~~~~ee~~~~~~~~~p~~~ 183 (244)
T 3kkl_A 115 P----------KAKNLQDIASKIYAN-GGVIAAICHGPLLFDGLIDIKTTRPLIEGKAITGFPLEGEIALGVDDILRSRK 183 (244)
T ss_dssp G----------GCHHHHHHHHHHHHT-TCEEEEETTGGGGGTTCBCTTTSSBTTTTCEECCSCHHHHHHHTTHHHHHHTT
T ss_pred c----------cCHHHHHHHHHHHHc-CCEEEEECHHHHHHHHhhccccCCceeCCceecCCCcHHHHhhhhhhhccccc
Confidence 3 478899999999995 99999999999999999 9999999887655
Q ss_pred ----------CCCeEEe------ccEEeccCCceEEEeecce
Q psy5570 789 ----------IKSRVRC------PPLKKEKSGVNITRLSITL 814 (875)
Q Consensus 789 ----------~~~~f~~------~~v~v~~~~~~~~r~pi~~ 814 (875)
.+++|+. ..|++|.+ +.|.+-|-+-
T Consensus 184 ~~~l~~~l~~~Ga~~~~~~~~~~~~vV~Dg~-lITg~gp~sa 224 (244)
T 3kkl_A 184 LTTVERVANKNGAKYLAPIHPWDDYSITDGK-LVTGVNANSS 224 (244)
T ss_dssp CCCHHHHHHTTTCEECCCSSTTSCCEEEETT-EEEESSGGGH
T ss_pred cccHHHHHHHCCCEEecCCCCCCCCEEEeCC-EEECCChHHH
Confidence 3678876 46777875 8888887765
No 44
>3j21_R 50S ribosomal protein L21E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.99 E-value=1.5e-10 Score=104.98 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=51.8
Q ss_pred cccccccccccccccccccCCCccccCCCcceecceeeecccEEEEcccccccccccccccCCCC
Q psy5570 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSV 301 (875)
Q Consensus 237 ~~~~~~~~~~~~~~~si~~g~p~kd~~g~Tg~v~~~~~~a~g~~v~k~v~~ritp~l~~~~~~sk 301 (875)
+++..++++++.+++|+|+||||++|||+||+|||++++|+|++||+.-..+-+-=++|||.+++
T Consensus 33 ~~yk~Gd~VdIk~~gsvqKGmPhk~yHGkTG~V~~vt~~Avgv~Vn~~g~~Kri~vrieHik~~~ 97 (97)
T 3j21_R 33 QEFEVGQRVHIVIEPSYHKGMPDPRFHGRTGTVVGKRGEAYIVEIKDGSKVKTLFIHPVHLRPQK 97 (97)
T ss_dssp CCCCTTCEEEECCCTTCCSSCCCGGGTTCEEEEEEEETTEEEEEEEETTEEEEEEECGGGEEECC
T ss_pred HHhcCCCEEEEEecCceEcCCCCcccCCCCeEEEeecCcEEEEEEEeCCcceEEEECHHHccccC
Confidence 45777999999999999999999999999999999999999999986322122222256777653
No 45
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.99 E-value=1.9e-09 Score=108.38 Aligned_cols=128 Identities=19% Similarity=0.235 Sum_probs=93.8
Q ss_pred eEEEEEecCCCCCH--HHHHHHHHH-cCCeeEEEEee--------------cccccccCccCccEEEEcCCcCccccccc
Q psy5570 671 ISIAVLREEGINGD--REMSAMAQV-CGFEVWDITVQ--------------DLLENKITLDRFKGLVFPGGFSYADALGS 733 (875)
Q Consensus 671 ~kVaIlv~pG~n~~--~e~~~A~~~-aG~~v~~V~~~--------------dl~~~~~~l~~~d~lvlPGGfS~gD~l~~ 733 (875)
+||+|++++|++-. .....+|++ .|+++.+++.. |..-++...++||+|++|||....
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~----- 76 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWE----- 76 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHH-----
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCccc-----
Confidence 48999999999833 234678888 99999998753 111112233489999999997421
Q ss_pred hhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC---------CCC-eEEecc-EEecc
Q psy5570 734 AKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY---------IKS-RVRCPP-LKKEK 802 (875)
Q Consensus 734 s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n---------~~~-~f~~~~-v~v~~ 802 (875)
...++.+.+.|+++.++ ++++.+||+|.++|.++|||.|++.|..++ .+. .|.++. +++|.
T Consensus 77 -------~~~~~~l~~~l~~~~~~-~k~i~aiC~G~~~La~aGlL~gr~~T~~~~~~~~~~~~~~~~~~~~~~~~~v~Dg 148 (188)
T 2fex_A 77 -------KGTAADLGGLVKRFRDR-DRLVAGICAAASALGGTGVLNDVAHTGNALASHKAYPAYRGEAHYRDQPRAVSDG 148 (188)
T ss_dssp -------HTCCCCCHHHHHHHHHT-TCEEEEETHHHHHHHHTTTTTTSCBCCSCHHHHHTSTTCCCGGGBCCCSSCEEET
T ss_pred -------ccccHHHHHHHHHHHHC-CCEEEEECHHHHHHHHCCCcCCccccCCcHHHHhhhhhcCCccceecCCCEEEEC
Confidence 13478899999999985 999999999999999999999998776432 122 455566 66676
Q ss_pred CCceEEEeec
Q psy5570 803 SGVNITRLSI 812 (875)
Q Consensus 803 ~~~~~~r~pi 812 (875)
+ +.|++-|-
T Consensus 149 ~-iiTs~g~~ 157 (188)
T 2fex_A 149 G-VVTAAGSA 157 (188)
T ss_dssp T-EEEECTTC
T ss_pred C-EEECCCcc
Confidence 5 66766653
No 46
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=98.98 E-value=5.9e-10 Score=115.11 Aligned_cols=89 Identities=30% Similarity=0.462 Sum_probs=67.8
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
.+|+|+|+.++|.- .+...+|+++|+++..+.. ...++++|+||||||+... . ..+.++..+.
T Consensus 22 ~~~~I~il~~~~~~--~~~~~~l~~~G~~~~~~~~------~~~l~~~Dglil~GG~~~~--~-------~~~~~~~~~~ 84 (219)
T 1q7r_A 22 SNMKIGVLGLQGAV--REHVRAIEACGAEAVIVKK------SEQLEGLDGLVLPGGESTT--M-------RRLIDRYGLM 84 (219)
T ss_dssp CCCEEEEESCGGGC--HHHHHHHHHTTCEEEEECS------GGGGTTCSEEEECCCCHHH--H-------HHHHHHTTCH
T ss_pred CCCEEEEEeCCCCc--HHHHHHHHHCCCEEEEECC------HHHHhhCCEEEECCCChHH--H-------HHHhhhhHHH
Confidence 46899999876633 4567899999999887653 2247899999999997421 1 1233455677
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+.+++++++ |+|+||||.|+|+|.++
T Consensus 85 ~~i~~~~~~-~~PilGIC~G~QlL~~~ 110 (219)
T 1q7r_A 85 EPLKQFAAA-GKPMFGTCAGLILLAKR 110 (219)
T ss_dssp HHHHHHHHT-TCCEEEETTHHHHHEEE
T ss_pred HHHHHHHHc-CCeEEEECHHHHHHHHH
Confidence 899999985 99999999999999883
No 47
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.98 E-value=1.1e-09 Score=122.51 Aligned_cols=115 Identities=17% Similarity=0.253 Sum_probs=88.4
Q ss_pred ceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec------------------------------ccccccCccCc
Q psy5570 670 VISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD------------------------------LLENKITLDRF 716 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d------------------------------l~~~~~~l~~~ 716 (875)
.+||+|++++|++ +.|+ ..+|+++|+++.+++... ..-++.++.+|
T Consensus 12 ~~kv~ill~dg~e-~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~ 90 (396)
T 3uk7_A 12 SRTVLILCGDYME-DYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSKY 90 (396)
T ss_dssp CCEEEEECCTTEE-HHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGGC
T ss_pred CCeEEEEeCCCcc-HHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCcccC
Confidence 4589999999999 6665 668999999999986531 01112235679
Q ss_pred cEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC-------C
Q psy5570 717 KGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY-------I 789 (875)
Q Consensus 717 d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n-------~ 789 (875)
|+|++|||.. .+.+ ..++.+.+.++++.++ ++++.+||+|.++|.++|||.|++.|..++ .
T Consensus 91 D~livpGG~~-~~~~----------~~~~~~~~~l~~~~~~-~~~i~aiC~G~~~La~aGlL~g~~~T~~~~~~~~l~~~ 158 (396)
T 3uk7_A 91 DGLVIPGGRA-PEYL----------ALTASVVELVKEFSRS-GKPIASICHGQLILAAADTVNGRKCTAYATVGPSLVAA 158 (396)
T ss_dssp SEEEECCBSH-HHHH----------TTCHHHHHHHHHHHHT-TCCEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHT
T ss_pred CEEEECCCcc-hhhc----------ccCHHHHHHHHHHHHc-CCEEEEECchHHHHHhccccCCCEeecCcchHHHHHHC
Confidence 9999999964 2223 3478899999999985 999999999999999999999998777443 3
Q ss_pred CCeEEecc
Q psy5570 790 KSRVRCPP 797 (875)
Q Consensus 790 ~~~f~~~~ 797 (875)
+.+|....
T Consensus 159 g~~~~~~~ 166 (396)
T 3uk7_A 159 GAKWVEPI 166 (396)
T ss_dssp TCEECCCS
T ss_pred CCEEECCC
Confidence 46776543
No 48
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=1.5e-09 Score=120.79 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=100.8
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec---ccc-------------cccCccCccEEEEcCCcCccc
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD---LLE-------------NKITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d---l~~-------------~~~~l~~~d~lvlPGGfS~gD 729 (875)
..+||+|++++|+. +.|+ ..+|+.+|+++.+++... +.. ++....+||+|++|||.+ .+
T Consensus 9 ~mkkV~ILl~dgf~-~~El~~p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG~g-~~ 86 (365)
T 3fse_A 9 GKKKVAILIEQAVE-DTEFIIPCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGGMA-PD 86 (365)
T ss_dssp --CEEEEECCTTBC-HHHHHHHHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCBTH-HH
T ss_pred CceEEEEEECCCCc-HHHHHHHHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECCcc-hh
Confidence 34589999999998 6655 679999999999987641 110 111234699999999974 22
Q ss_pred cccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC-------CCCeEEeccEEecc
Q psy5570 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY-------IKSRVRCPPLKKEK 802 (875)
Q Consensus 730 ~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n-------~~~~f~~~~v~v~~ 802 (875)
.+ ..++.+.+.|+++.++ |+++.+||+|.++|.++|||.|++.|..+. .+.+|.++.++++.
T Consensus 87 ~l----------~~~~~l~~~Lr~~~~~-gk~IaAIC~G~~lLA~AGLLdGrraTthw~~~~~L~~~g~~~~d~~vV~DG 155 (365)
T 3fse_A 87 KM----------RRNPNTVRFVQEAMEQ-GKLVAAVCHGPQVLIEGDLLRGKQATGFIAISKDMMNAGADYLDEALVVDG 155 (365)
T ss_dssp HH----------TTCHHHHHHHHHHHHT-TCEEEEETTTHHHHHHTTCCTTCEECCCGGGHHHHHHTTCEECCSSCEEET
T ss_pred hc----------cCCHHHHHHHHHHHHC-CCEEEEECHHHHHHHHcCCcCCCEEEeChHHHHHHHhCCCEEecCcEEEEC
Confidence 22 3478899999999985 999999999999999999999998777433 35778877777777
Q ss_pred CCceEEEeecce
Q psy5570 803 SGVNITRLSITL 814 (875)
Q Consensus 803 ~~~~~~r~pi~~ 814 (875)
+ +.|++-|-+.
T Consensus 156 n-iITs~G~~a~ 166 (365)
T 3fse_A 156 N-LITSREPGDL 166 (365)
T ss_dssp T-EEEECSGGGH
T ss_pred C-EEECCCHHHH
Confidence 5 7788887765
No 49
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=98.96 E-value=1.3e-09 Score=109.38 Aligned_cols=88 Identities=26% Similarity=0.380 Sum_probs=67.9
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+|+|+|+..+| +..+..++|+++|+++.++.. ...++++|+|+||||++ +.+ ..+..+..+.+
T Consensus 2 ~p~Igi~~~~~--~~~~~~~~l~~~G~~~~~~~~------~~~l~~~dglil~GG~~--~~~-------~~~~~~~~~~~ 64 (191)
T 2ywd_A 2 RGVVGVLALQG--DFREHKEALKRLGIEAKEVRK------KEHLEGLKALIVPGGES--TTI-------GKLAREYGIED 64 (191)
T ss_dssp -CCEEEECSSS--CHHHHHHHHHTTTCCCEEECS------GGGGTTCSEEEECSSCH--HHH-------HHHHHHTTHHH
T ss_pred CcEEEEEecCC--chHHHHHHHHHCCCEEEEeCC------hhhhccCCEEEECCCCh--hhh-------HHhhhhhhHHH
Confidence 57899998875 578899999999999987642 23578899999999952 222 12222456788
Q ss_pred HHHHHHHCCC-ceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSD-TFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g-~~vLGICnGfQiL~el 775 (875)
.+++++++ | +|+||||.|+|+|.++
T Consensus 65 ~i~~~~~~-~~~PilGiC~G~Q~l~~~ 90 (191)
T 2ywd_A 65 EVRKRVEE-GSLALFGTCAGAIWLAKE 90 (191)
T ss_dssp HHHHHHHT-TCCEEEEETHHHHHHEEE
T ss_pred HHHHHHHC-CCCeEEEECHHHHHHHHH
Confidence 99999984 8 9999999999999884
No 50
>3mcq_A Thiamine-monophosphate kinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PGE PG4 1PE; 1.91A {Methylobacillus flagellatus}
Probab=98.96 E-value=4.3e-10 Score=122.76 Aligned_cols=91 Identities=10% Similarity=-0.124 Sum_probs=69.1
Q ss_pred cCceEEEEEecCCcEEEEEEecCC---C-cccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQ---P-IKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRF 192 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~---p-~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w 192 (875)
+.|++|++++ ....+++|++.. + ++..+|||..++.||++++++|+|+|+.++. +.+++++-
T Consensus 25 GdDaavi~~~--~~~~lv~ttD~~~~~~hf~~~~~p~~~G~~ava~~lsDiaamGa~P~~-~l~~l~~p----------- 90 (319)
T 3mcq_A 25 GDDAALIQPS--PGMELAVSADMLVANTHFYPNIDPWLIGWKSLAVNISDMAAMGAQPRW-ATLTIALP----------- 90 (319)
T ss_dssp CGGGGCCCCC--TTCEEEEEEEEEECCTTSCCCSCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEES-----------
T ss_pred CCCEEEEeeC--CCCeEEEEecccCcccCCCCCCCHHHHHHHHHHHHHHHHHHcCCchHH-hEEEEECC-----------
Confidence 4699999875 246789999852 3 3445699999999999999999999986654 66666652
Q ss_pred cccCcc-hhcccccccccchHHhhhhcCCcccCCCC
Q psy5570 193 AFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMN 227 (875)
Q Consensus 193 ~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkd 227 (875)
.-.++ +-+. ++||.++|+++|+|+|||.-
T Consensus 91 -~~~~~~l~~i-----~~Gi~~~~~~~g~~lvGGdt 120 (319)
T 3mcq_A 91 -EADEDWISKF-----AAGFFACAAQFDIALIGGDT 120 (319)
T ss_dssp -SCCHHHHHHH-----HHHHHHHHHHTTCEEEEEEE
T ss_pred -CCCHHHHHHH-----HHHHHHHHHHcCCeEEeeEc
Confidence 11222 4444 99999999999999997654
No 51
>3vti_C Hydrogenase maturation factor; transferase, carbamoyltransfer, maturation of [NIFE]-hydroge nitrIle synthesis, iron; 2.56A {Thermoanaerobacter tengcongensis}
Probab=98.96 E-value=1.4e-10 Score=126.20 Aligned_cols=88 Identities=10% Similarity=-0.002 Sum_probs=68.6
Q ss_pred CcCceEEEEEecCCcEEEEEEecCC---CcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccc
Q psy5570 116 PLADVAVVALVHNDLRGAATSIGEQ---PIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRF 192 (875)
Q Consensus 116 p~sDaaV~~~~~~~~~g~ams~G~~---p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w 192 (875)
++.|++|++ ..+++|++.. |++. +||.+++.||++++++|+|+|+.++. +.+++++.
T Consensus 19 ~gdDaav~~------~~l~~t~D~~v~~~~~~--~~~~iG~~ava~~~sDiaamGA~P~~-~~~~l~~p----------- 78 (314)
T 3vti_C 19 AMEDAALLF------GNITLTTDSFTVKPLFF--PGGDIGKLAVCGTVNDASMRGAKPLF-LTAAFIIE----------- 78 (314)
T ss_dssp HTCSSEEET------TTEEEEEEEECCSSSEE--TTEEHHHHHHHHHHHHTTTTTEEEEE-EEEEEEEE-----------
T ss_pred CCCCeEEec------CceEEEecCCccCCccc--CccHHHHHHHHHHHHHHHHcCCccce-eEEEEEcC-----------
Confidence 346999986 2589999987 8874 89999999999999999999986665 77777763
Q ss_pred cccCcchhcccccccccchHHhhhhcCCcccCCCC
Q psy5570 193 AFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMN 227 (875)
Q Consensus 193 ~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkd 227 (875)
..+..+++.+. ++||.++|+++|+|+|||.=
T Consensus 79 --~~~~~~~l~~i--~~Gi~~~~~~~g~~lvGGdt 109 (314)
T 3vti_C 79 --EGFPVEDLKKI--VKSMAEAAKEAGVKIVAGDT 109 (314)
T ss_dssp --TTCCHHHHHHH--HHHHHHHHHHHTCEEEEEEE
T ss_pred --CCCCHHHHHHH--HHHHHHHHHHcCCeEEeeee
Confidence 22233444333 99999999999999997543
No 52
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=98.96 E-value=9.7e-10 Score=112.51 Aligned_cols=91 Identities=25% Similarity=0.350 Sum_probs=68.0
Q ss_pred cccceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchh
Q psy5570 667 GKKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEG 746 (875)
Q Consensus 667 ~~~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~ 746 (875)
+..++||+|+.++| +-.++..+|+++|+++..+.. ..+++++|+||||||+. ...+ .+.++..
T Consensus 17 ~~~~~~I~ii~~~~--~~~~~~~~l~~~g~~~~~~~~------~~~l~~~d~iil~GG~~--~~~~-------~~~~~~~ 79 (208)
T 2iss_D 17 RGSHMKIGVLGVQG--DVREHVEALHKLGVETLIVKL------PEQLDMVDGLILPGGES--TTMI-------RILKEMD 79 (208)
T ss_dssp ---CCEEEEECSSS--CHHHHHHHHHHTTCEEEEECS------GGGGGGCSEEEECSSCH--HHHH-------HHHHHTT
T ss_pred CCCCcEEEEEECCC--chHHHHHHHHHCCCEEEEeCC------hHHHhhCCEEEECCCcH--HHHH-------hhhhhhh
Confidence 34678999996534 688889999999998877642 23478899999999842 2221 2334556
Q ss_pred HHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 747 IKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 747 i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+.+.|++++++ |+|+||||.|+|+|.++
T Consensus 80 ~~~~i~~~~~~-g~PilGIC~G~QlL~~~ 107 (208)
T 2iss_D 80 MDEKLVERINN-GLPVFATCAGVILLAKR 107 (208)
T ss_dssp CHHHHHHHHHT-TCCEEEETHHHHHHEEE
T ss_pred HHHHHHHHHHC-CCeEEEECHHHHHHHHH
Confidence 78899999885 99999999999999983
No 53
>2btu_A Phosphoribosyl-aminoimidazole synthetase; synthase, PURM, de novo purine biosynthesis, AIR synthase family, spine, FGAR amidotransferase; 2.31A {Bacillus anthracis}
Probab=98.95 E-value=7.9e-10 Score=121.86 Aligned_cols=94 Identities=10% Similarity=-0.154 Sum_probs=65.7
Q ss_pred cCceEEEEEec--CCcEEEEEEecCCCcccc-----cCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCc
Q psy5570 117 LADVAVVALVH--NDLRGAATSIGEQPIKGL-----VDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFS 189 (875)
Q Consensus 117 ~sDaaV~~~~~--~~~~g~ams~G~~p~~~~-----~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~ 189 (875)
+.|++|+.++. -....++++++.-..... -+|++-++.||+++++||+|+|+.++. +.+++++.
T Consensus 39 Gdd~a~~~~~~~~~~~~~lv~~tD~~~~~~~~~~~~~~~~~iG~~ava~~vsDi~a~Ga~P~~-~l~~l~~~-------- 109 (346)
T 2btu_A 39 GGFGGMFDLSKFALEEPVLVSGTDGVGTKLMLAFMADKHDTIGIDAVAMCVNDIVVQGAEPLF-FLDYIACG-------- 109 (346)
T ss_dssp --CCCEEECTTCCCSSEEEEEEEEECCTTHHHHHHHCCCSSHHHHHHHHHHHHHHTTTCEEEE-EEEEEEES--------
T ss_pred cceEEEEecCccCCCCceEEEecccCCchHHHHHHhcCcchHHHHHHHHHHHHHHHcCCChHH-HHHHHhcC--------
Confidence 45999988641 114567777776644222 368999999999999999999987665 54554431
Q ss_pred ccccccCcc-hhcccccccccchHHhhhhcCCcccCCCCC
Q psy5570 190 GRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMNP 228 (875)
Q Consensus 190 ~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkds 228 (875)
.-+|+ +.++ ++||.++|+++|+|++||.-+
T Consensus 110 ----~~~~~~l~~i-----~~Gi~~~~~~~g~~lvGGdt~ 140 (346)
T 2btu_A 110 ----KAEPSKIENI-----VKGISEGCRQAGCALIGGETA 140 (346)
T ss_dssp ----SCCHHHHHHH-----HHHHHHHHHHHTCEEEEEEEE
T ss_pred ----CCCHHHHHHH-----HHHHHHHHHHhCCeEeeeEEE
Confidence 01233 5555 999999999999999976654
No 54
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.94 E-value=2.4e-09 Score=109.32 Aligned_cols=128 Identities=13% Similarity=0.110 Sum_probs=92.8
Q ss_pred ceEEEEEecCCCCCHHHH---HHHHHHcC------CeeEEEEeec--c-----------cccccCccCccEEEEcCCcCc
Q psy5570 670 VISIAVLREEGINGDREM---SAMAQVCG------FEVWDITVQD--L-----------LENKITLDRFKGLVFPGGFSY 727 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~---~~A~~~aG------~~v~~V~~~d--l-----------~~~~~~l~~~d~lvlPGGfS~ 727 (875)
.+||+|+++||++ +.|+ ..+|+.++ +++.+++.+. + .-++.++.++|.|++|||...
T Consensus 5 ~~~v~ill~~g~~-~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~ 83 (202)
T 3gra_A 5 PYRVDFILLEHFS-MASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRT 83 (202)
T ss_dssp CEEEEEEECTTBC-HHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTC
T ss_pred cEEEEEEEeCCCC-HHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCch
Confidence 4589999999998 6665 66777775 8888887541 0 111222568999999999763
Q ss_pred cccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCC---------CCeEEeccE
Q psy5570 728 ADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYI---------KSRVRCPPL 798 (875)
Q Consensus 728 gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~---------~~~f~~~~v 798 (875)
.+ . . +.+.+.|+++.++ |+++.+||.|.++|.++|||.|++.|.-+.. ..++..+.+
T Consensus 84 ~~-~-----------~-~~l~~~l~~~~~~-g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~~ 149 (202)
T 3gra_A 84 PL-K-----------Y-PELDRLLNDCAAH-GMALGGLWNGAWFLGRAGVLDDYGCSIHPEQRASLSERSPQTRITPASF 149 (202)
T ss_dssp CS-C-----------C-TTHHHHHHHHHHH-TCEEEEETTHHHHHHHHTCCTTEEECCCGGGHHHHHHHCTTEEECSSSE
T ss_pred hh-c-----------c-HHHHHHHHHHHhh-CCEEEEECHHHHHHHHcCCcCCCcEEeChhHHHHHHHHCCCCEecCCeE
Confidence 21 1 2 6788999999985 9999999999999999999999987763322 245666655
Q ss_pred EeccCCceEEEeecc
Q psy5570 799 KKEKSGVNITRLSIT 813 (875)
Q Consensus 799 ~v~~~~~~~~r~pi~ 813 (875)
+++.+ +.|++-|-+
T Consensus 150 v~dg~-iiTs~G~~a 163 (202)
T 3gra_A 150 TLDRD-RLSAASPNG 163 (202)
T ss_dssp EEETT-EEEESSHHH
T ss_pred EEeCC-EEECCCHHH
Confidence 55654 666665533
No 55
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=98.94 E-value=2.7e-09 Score=109.81 Aligned_cols=132 Identities=13% Similarity=0.111 Sum_probs=94.7
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHc--CCeeEEEEeec--cc--------cc--ccCccCccEEEEcCCcCccccc
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVC--GFEVWDITVQD--LL--------EN--KITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~a--G~~v~~V~~~d--l~--------~~--~~~l~~~d~lvlPGGfS~gD~l 731 (875)
..+||+|+++||+. +.|+ ..+|+++ |+++.+++.+. +. .+ -.++..+|+|++|||... +
T Consensus 3 ~~~~V~ill~~g~~-~~e~~~~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpGG~~~-~-- 78 (211)
T 3mgk_A 3 LSYRIDVLLFNKFE-TLDVFGPVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPGGSGT-R-- 78 (211)
T ss_dssp -CEEEEEECCTTCC-HHHHHHHHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECCSTHH-H--
T ss_pred CceEEEEEEeCCcc-hhHHHHHHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECCCcch-h--
Confidence 35689999999998 6655 6688877 58888886531 10 00 112346899999999632 2
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCC---------CCeEE-eccEEec
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYI---------KSRVR-CPPLKKE 801 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~---------~~~f~-~~~v~v~ 801 (875)
.+..++.+.+.|+++.++ ++++.+||.|.++|.++|||.|++.|..+.. ..+|. ++.+++|
T Consensus 79 --------~~~~~~~~~~~l~~~~~~-~k~iaaiC~G~~~La~aGLL~Gr~~Tth~~~~~~l~~~~p~~~~~~~~~~v~D 149 (211)
T 3mgk_A 79 --------EKVNDDNFINFIGNMVKE-SKYIISVCTGSALLSKAGILNGKRATTNKRSFKWVTEQNEDVLWVKEARWVKD 149 (211)
T ss_dssp --------HHTTCHHHHHHHHHHHHH-CSEEEECTTHHHHHHHTTTTTTSEECCCSTTHHHHHTTCTTSEECSSCSEEEE
T ss_pred --------hhcCCHHHHHHHHHHHHc-CCEEEEEchHHHHHHhcCCcCCCeEeeChhHHHHHHHHCCCcEEecCCeEEEe
Confidence 233578899999999985 9999999999999999999999987764332 24554 4456666
Q ss_pred cCCceEEEeecce
Q psy5570 802 KSGVNITRLSITL 814 (875)
Q Consensus 802 ~~~~~~~r~pi~~ 814 (875)
.+ +.|++-|-+-
T Consensus 150 g~-iiTs~G~~a~ 161 (211)
T 3mgk_A 150 GN-IYTSSGVSAG 161 (211)
T ss_dssp TT-EEEECSHHHH
T ss_pred CC-EEECCCHHHH
Confidence 65 7777766443
No 56
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.93 E-value=4.6e-09 Score=109.62 Aligned_cols=129 Identities=11% Similarity=0.099 Sum_probs=95.0
Q ss_pred eEEEEEecCCCCCHHHH---HHHHHH-cCCeeEEEEeec--cc--------cc--ccCccCccEEEEcCCcCccccccch
Q psy5570 671 ISIAVLREEGINGDREM---SAMAQV-CGFEVWDITVQD--LL--------EN--KITLDRFKGLVFPGGFSYADALGSA 734 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~~~-aG~~v~~V~~~d--l~--------~~--~~~l~~~d~lvlPGGfS~gD~l~~s 734 (875)
+||+|+++||+. +.|+ ...|++ .|+++.+++.+. +. .+ -.++.+||+|++|||... +.
T Consensus 6 ~~V~ill~~gf~-~~e~~~p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~-~~---- 79 (231)
T 3noq_A 6 VQIGFLLFPEVQ-QLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGV-GA---- 79 (231)
T ss_dssp EEEEEECCTTCC-HHHHHHHHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTH-HH----
T ss_pred EEEEEEEeCCCc-HHHHHHHHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCCh-hh----
Confidence 589999999999 6665 668888 699999987631 10 00 123457999999999642 22
Q ss_pred hHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCcccccc-------CCCCeEEeccEEeccCCceE
Q psy5570 735 KGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQP-------YIKSRVRCPPLKKEKSGVNI 807 (875)
Q Consensus 735 ~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~-------n~~~~f~~~~v~v~~~~~~~ 807 (875)
+..++.+.+.|+++.++ ++++.+||.|.++|.++|||.|++.|.-. +....+.++.++++.+ +.|
T Consensus 80 ------~~~~~~l~~~lr~~~~~-g~~v~aiC~G~~~La~aGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~-iiT 151 (231)
T 3noq_A 80 ------LMEDPQALAFIRQQAAR-ARYVTSVSTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGN-LLT 151 (231)
T ss_dssp ------HTTCHHHHHHHHHHHTT-CSEEEEETTHHHHHHHTTTTTTCEECCCGGGGGGTGGGTCEECCSSEEEETT-EEE
T ss_pred ------hccCHHHHHHHHHHHhc-CCEEEEECHHHHHHHHcCCCCCceeeecHhHHHHHHhCCCeeeCCcEEEeCC-EEE
Confidence 33578999999999985 99999999999999999999999876632 2234456666666664 667
Q ss_pred EEeecc
Q psy5570 808 TRLSIT 813 (875)
Q Consensus 808 ~r~pi~ 813 (875)
+.-|-+
T Consensus 152 s~G~~a 157 (231)
T 3noq_A 152 GGGITA 157 (231)
T ss_dssp ECSTTH
T ss_pred CCCHHH
Confidence 766543
No 57
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=98.92 E-value=4.6e-10 Score=120.43 Aligned_cols=50 Identities=74% Similarity=1.145 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 174 Ch~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~ 223 (294)
T 3kgb_A 174 CHVLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQ 223 (294)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CCceEEEEEECCEEEEEEEehhhhhhHHhhccHHHHHHHHHHHHHHhCCe
Confidence 89999999999999999999999999999999999999999999999976
No 58
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=98.91 E-value=4.6e-09 Score=111.30 Aligned_cols=129 Identities=13% Similarity=0.099 Sum_probs=94.1
Q ss_pred eEEEEEecCCCCCHHHH---HHHH-HHcCCeeEEEEeec--c------------cccccCccCccEEEEcCCc-Cccccc
Q psy5570 671 ISIAVLREEGINGDREM---SAMA-QVCGFEVWDITVQD--L------------LENKITLDRFKGLVFPGGF-SYADAL 731 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~---~~A~-~~aG~~v~~V~~~d--l------------~~~~~~l~~~d~lvlPGGf-S~gD~l 731 (875)
+||+|+++||+. +.|+ ..+| +..|+++.+++.+. + .-++. ...||+|++|||. .. +.
T Consensus 24 ~~I~ill~~gf~-~~e~~~p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~-~~~yD~liVPGG~~g~-~~- 99 (253)
T 3ewn_A 24 EQIAMLVYPGMT-VMDLVGPHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTC-PRDLTVLFAPGGTDGT-LA- 99 (253)
T ss_dssp CEEEEECCTTBC-HHHHHHHHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTS-CSSCSEEEECCBSHHH-HH-
T ss_pred eEEEEEeCCCCc-HHHHHHHHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHc-CCCCCEEEECCCccch-hh-
Confidence 589999999999 6665 5677 45799999997641 1 11111 1357999999997 31 22
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC-------CCCeEEeccEEeccCC
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY-------IKSRVRCPPLKKEKSG 804 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n-------~~~~f~~~~v~v~~~~ 804 (875)
+..++.+.+.|+++.++ |+++.+||.|.++|.++|||.|++.|.-.. ....+.++.+++|.+
T Consensus 100 ---------l~~~~~l~~~Lr~~~~~-gk~IaaICtG~~lLa~AGLL~Gr~aTthw~~~~~l~~~~~~~~~~~vV~Dg~- 168 (253)
T 3ewn_A 100 ---------AASDAETLAFMADRGAR-AKYITSVCSGSLILGAAGLLKGYKATSHWSCRDALAGFGAIPTEARVVRDRN- 168 (253)
T ss_dssp ---------HTTCHHHHHHHHHHHTT-CSEEEEETTHHHHHHHTTCCTTCEECCCTTTGGGGGGGTCEECCSSEEEETT-
T ss_pred ---------hccCHHHHHHHHHHHHc-CCEEEEEChHHHHHHHcCCCCCCEEecCHHHHHHHHhCCCeeeCCcEEEECC-
Confidence 34578999999999985 999999999999999999999998666332 234556677766665
Q ss_pred ceEEEeecce
Q psy5570 805 VNITRLSITL 814 (875)
Q Consensus 805 ~~~~r~pi~~ 814 (875)
+.|+.-|-+-
T Consensus 169 iiTs~G~~a~ 178 (253)
T 3ewn_A 169 RITGAGVTAG 178 (253)
T ss_dssp EEEECSTTHH
T ss_pred EEECCCHHHH
Confidence 6677765433
No 59
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.91 E-value=7e-09 Score=106.59 Aligned_cols=127 Identities=11% Similarity=0.159 Sum_probs=93.7
Q ss_pred eEEEEEecCCCCCH--HHHHHHHH--------HcCCeeEEEEee--------------cccccccCccCccEEEEcCCcC
Q psy5570 671 ISIAVLREEGINGD--REMSAMAQ--------VCGFEVWDITVQ--------------DLLENKITLDRFKGLVFPGGFS 726 (875)
Q Consensus 671 ~kVaIlv~pG~n~~--~e~~~A~~--------~aG~~v~~V~~~--------------dl~~~~~~l~~~d~lvlPGGfS 726 (875)
+||+|++++|+... .....+|+ +.|+++.+++.+ |..-++...++||+|++|||..
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~ 85 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT 85 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence 47999999999843 24477888 678999998764 1111122345899999999975
Q ss_pred ccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccc-cCC---------C-CeEEe
Q psy5570 727 YADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQ-PYI---------K-SRVRC 795 (875)
Q Consensus 727 ~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~-~n~---------~-~~f~~ 795 (875)
. + + ..++.+.+.|+++.++ |+++.+||+|.++|.++|||.|++.|.- +.. . ..+.+
T Consensus 86 ~-~-~----------~~~~~l~~~l~~~~~~-gk~iaaiC~G~~~La~aGlL~Gr~~Tt~~~~~~~~l~~~~p~~~~~~~ 152 (212)
T 3efe_A 86 W-S-E----------EIHQPILERIGQALKI-GTIVAAICGATDALANMGYLDTRKHTSNNLEYTKMVCPNYKGEKFYEL 152 (212)
T ss_dssp T-T-S----------GGGHHHHHHHHHHHHH-TCEEEEETHHHHHHHHTTTTSSSCBCCSCHHHHHHHCTTCCCTTTBCC
T ss_pred c-c-c----------ccCHHHHHHHHHHHHC-CCEEEEEcHHHHHHHHcCCCCCCeeecCCHHHHHHHHhhCCCccccCC
Confidence 3 2 2 2377899999999985 9999999999999999999999986663 211 1 23566
Q ss_pred ccEEeccCCceEEEee
Q psy5570 796 PPLKKEKSGVNITRLS 811 (875)
Q Consensus 796 ~~v~v~~~~~~~~r~p 811 (875)
+.+++|.+ +.|++-|
T Consensus 153 ~~~V~Dg~-iiTs~G~ 167 (212)
T 3efe_A 153 GPAVSDAN-LVTASGI 167 (212)
T ss_dssp CSEEEETT-EEEECTT
T ss_pred CcEEEECC-EEECCCc
Confidence 77777765 6777765
No 60
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide biosynthesis, transferase; HET: UMP CB3; 2.08A {Filobasidiella neoformans}
Probab=98.91 E-value=5.2e-10 Score=121.25 Aligned_cols=50 Identities=60% Similarity=0.958 Sum_probs=48.8
Q ss_pred ceEEEEEEee---------CCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVA---------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~---------~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|. .|+|+|.++|||||++||+|||+++||+|++|+||+|++.
T Consensus 187 Ch~~~QF~V~~~~~~~~~~~gkL~~~lyQRS~D~~LGvPfNiasyalL~~miA~~~gl~ 245 (317)
T 2aaz_A 187 CHMFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTE 245 (317)
T ss_dssp SEEEEEEEEECCCTTCTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred cceEEEEEEecccccCCCCCCeEEEEEEeehhhhhhhhhhHHHHHHHHHHHHHHHhCCe
Confidence 8999999999 8999999999999999999999999999999999999976
No 61
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.90 E-value=3.4e-09 Score=111.19 Aligned_cols=130 Identities=10% Similarity=0.036 Sum_probs=94.6
Q ss_pred eEEEEEec------------CCCCCHHHH---HHHHHHcCCeeEEEEeec---c--------------------------
Q psy5570 671 ISIAVLRE------------EGINGDREM---SAMAQVCGFEVWDITVQD---L-------------------------- 706 (875)
Q Consensus 671 ~kVaIlv~------------pG~n~~~e~---~~A~~~aG~~v~~V~~~d---l-------------------------- 706 (875)
+||+|++. +|+. ..|+ +.+|+++|+++.+++... +
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~-~~E~~~p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~g 82 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVF-VVEALHPFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDSDFN 82 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBC-HHHHHHHHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTSHHH
T ss_pred ceEEEEECCCCcccCCCCCCCccC-HHHHHHHHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhHHHH
Confidence 37888874 3444 3444 668999999999987531 0
Q ss_pred -------cccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcC---
Q psy5570 707 -------LENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG--- 776 (875)
Q Consensus 707 -------~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG--- 776 (875)
.-++.++++||+|++|||......+ ..++.+.+.|++|.++ |++|.+||+|.++|.++|
T Consensus 83 ~~l~~~~~l~~v~~~~~D~livpGG~~~~~~l----------~~~~~l~~~l~~~~~~-gk~vaaIC~G~~~La~ag~~~ 151 (243)
T 1rw7_A 83 KTLAKIKTPKEVNADDYQIFFASAGHGTLFDY----------PKAKDLQDIASEIYAN-GGVVAAVCHGPAIFDGLTDKK 151 (243)
T ss_dssp HHHHTCBCGGGCCGGGEEEEEECCSTTHHHHG----------GGCHHHHHHHHHHHHT-TCEEEEETTGGGGGTTCBCTT
T ss_pred hhhccCCChHHCCHhhCcEEEECCCCCchhhc----------ccCHHHHHHHHHHHHc-CCEEEEECCCHHHHHhcCccc
Confidence 0012234579999999997532222 3478899999999995 999999999999999999
Q ss_pred ----CCCCCccccccC--------------------------CCCeEE------eccEEeccCCceEEEeecc
Q psy5570 777 ----WFSVSTQARQPY--------------------------IKSRVR------CPPLKKEKSGVNITRLSIT 813 (875)
Q Consensus 777 ----lLpg~~~t~~~n--------------------------~~~~f~------~~~v~v~~~~~~~~r~pi~ 813 (875)
||.|++.|..++ .+.+|+ .+.+++|.+ +.|.+-|-+
T Consensus 152 ~g~~lL~G~~~T~~~~~~e~~~~~~~~~p~~~~~~l~~~l~~~g~~~~~~~~~~~~~vV~Dg~-liT~~g~~s 223 (243)
T 1rw7_A 152 TGRPLIEGKSITGFTDVGETILGVDSILKAKNLATVEDVAKKYGAKYLAPVGPWDDYSITDGR-LVTGVNPAS 223 (243)
T ss_dssp TSSBTTTTCEECCSCHHHHHHTTCHHHHHHTTCCCHHHHHHHTTCEECCCSSTTSCCEEEETT-EEEECSGGG
T ss_pred CCceeeCCcEEeecCCHHHhhccccccccccccccHHHHHHHcCCEEEcCCCCCCCCEEEeCC-EEECCChhH
Confidence 999998777544 256787 566777765 777777654
No 62
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex, transferase; HET: UMP F89; 1.90A {Pneumocystis carinii} SCOP: d.117.1.1 PDB: 1ci7_A*
Probab=98.90 E-value=5.6e-10 Score=120.19 Aligned_cols=50 Identities=70% Similarity=1.067 Sum_probs=48.8
Q ss_pred ceEEEEEEee------CCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVA------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~------~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|. .|+|+|.++|||||++||+|||+++||+|++|+||+|++.
T Consensus 173 Ch~~~QF~V~~~~~~~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 228 (297)
T 1f28_A 173 CHMFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLD 228 (297)
T ss_dssp SEEEEEEEECCCSTTSCCEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ceeEEEEEEeccCCCCCCcEEEEEEhhhhhHHhhhhhhHHHHHHHHHHHHHHhCCe
Confidence 8999999999 8999999999999999999999999999999999999976
No 63
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C* 1j3j_C* 3dg8_C* 3dga_C*
Probab=98.90 E-value=6e-10 Score=120.98 Aligned_cols=50 Identities=70% Similarity=1.079 Sum_probs=49.0
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 210 Ch~~~QF~V~~gkLs~~lyQRS~D~~LG~PfNiasyalL~~miAq~~Gle 259 (328)
T 1j3k_C 210 CHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 259 (328)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ceeEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCe
Confidence 89999999999999999999999999999999999999999999999976
No 64
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=98.90 E-value=5.6e-10 Score=119.66 Aligned_cols=50 Identities=76% Similarity=1.246 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 177 Ch~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~ 226 (295)
T 3ed7_A 177 CHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 226 (295)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEEEeCCEEEEEEEeehhhhHHhhhhhHHHHHHHHHHHHHHhCCe
Confidence 89999999999999999999999999999999999999999999999976
No 65
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=98.90 E-value=6.7e-10 Score=117.65 Aligned_cols=50 Identities=70% Similarity=1.048 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 147 Ch~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 196 (264)
T 3qj7_A 147 CHAFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLS 196 (264)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEEEeCCEEEEEEEhhhhhHHHHhhccHHHHHHHHHHHHHhcCCe
Confidence 89999999999999999999999999999999999999999999999976
No 66
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME; 2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Probab=98.90 E-value=5.9e-10 Score=121.76 Aligned_cols=50 Identities=76% Similarity=1.246 Sum_probs=49.1
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||+|||+++||+|++|+||+|++.
T Consensus 237 Ch~~~QF~V~~gkLs~~lyQRS~D~~LGvPfNIasyalLt~miAq~~Gle 286 (355)
T 1hw4_A 237 CHALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 286 (355)
T ss_dssp CSEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ceeEEEEEEeCCEEEEEEEehhhhhhhhhcchHHHHHHHHHHHHHHHCCe
Confidence 89999999999999999999999999999999999999999999999976
No 67
>3u0o_A Selenide, water dikinase; ATP binding protein, selenophosphate synthesis, transferase; 2.25A {Escherichia coli}
Probab=98.89 E-value=1e-09 Score=121.36 Aligned_cols=96 Identities=16% Similarity=-0.013 Sum_probs=72.8
Q ss_pred cCCCCCCcCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCc
Q psy5570 110 VGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFS 189 (875)
Q Consensus 110 vGp~~~p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~ 189 (875)
+||. .+.|++|++++ ....+++|++.++. ...|||.+++.||++++++|+|+|+.++. +.++++|-
T Consensus 44 vg~~--~gdDaavi~~~--~~~~lv~ttD~~~~-~~~~p~~~G~~ava~~lsDiaamGA~P~~-~l~~l~~p-------- 109 (347)
T 3u0o_A 44 VGNE--TRDDAAVYDLG--NGTSVISTTDFFMP-IVDNPFDFGRIAATNAISDIFAMGGKPIM-AIAILGWP-------- 109 (347)
T ss_dssp CSCS--SCCSSEEEECT--TSEEEEEEEEEESC-CSSCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEEC--------
T ss_pred ECCC--CCCceEEEEeC--CCcEEEEEecCCCC-CccCHHHHHHHHHHHHHHHHHHcCCchHH-HHhheeCC--------
Confidence 5652 24799999975 45789999998864 56899999999999999999999986654 66666551
Q ss_pred cccccc-Ccc-hhcccccccccchHHhhhhcCCcccCCCC
Q psy5570 190 GRFAFK-NHG-IYDHLDRSQCLPIRYVDDNNKITEDYPMN 227 (875)
Q Consensus 190 ~~w~~g-~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~gkd 227 (875)
... .++ +-+. ++||.++|+++|+|+|||.-
T Consensus 110 ---~~~~~~~~l~~i-----~~Gi~~~~~~~gv~lvGGdt 141 (347)
T 3u0o_A 110 ---INKLSPEIAREV-----TEGGRYACRQAGIALAGGHS 141 (347)
T ss_dssp ---TTTSCHHHHHHH-----HHHHHHHHHHTTCCEEEEEE
T ss_pred ---CCCCCHHHHHHH-----HHHHHHHHHHcCCEEEccee
Confidence 011 122 4444 99999999999999997654
No 68
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.89 E-value=4.9e-09 Score=107.63 Aligned_cols=134 Identities=10% Similarity=0.077 Sum_probs=93.8
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcC-------CeeEEEEeec--cc--------cc--ccCccCccEEEEcCCcC
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCG-------FEVWDITVQD--LL--------EN--KITLDRFKGLVFPGGFS 726 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG-------~~v~~V~~~d--l~--------~~--~~~l~~~d~lvlPGGfS 726 (875)
+.+||+|+++||++ +.|+ ...|+.++ +++.+++.+. +. .+ -.++.++|+|++|||..
T Consensus 7 ~~~~v~ill~~g~~-~~e~~~~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~livpGg~~ 85 (209)
T 3er6_A 7 KNLRVVALAPTGRY-FASIISSLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNILIIGSIGD 85 (209)
T ss_dssp CCEEEEEECCCTTS-CHHHHHHHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEEEECCCSC
T ss_pred CCeEEEEEEeCCCC-HHHHHHHHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEEEECCCCC
Confidence 45689999999998 5444 56777764 7888876531 00 00 11246799999999986
Q ss_pred ccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccC---------CCCeEEec-
Q psy5570 727 YADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPY---------IKSRVRCP- 796 (875)
Q Consensus 727 ~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n---------~~~~f~~~- 796 (875)
..+.. +..++.+.+.|+++.++ |+++.+||.|.++|.++|||.|++.|.-+. ...++...
T Consensus 86 ~~~~~---------~~~~~~l~~~l~~~~~~-g~~iaaIC~G~~~La~aGLL~gr~aTth~~~~~~l~~~~p~~~~~~~~ 155 (209)
T 3er6_A 86 PLESL---------DKIDPALFDWIRELHLK-GSKIVAIDTGIFVVAKAGLLQQNKAVMHSYFAHLFGELFPEIMLMTEQ 155 (209)
T ss_dssp HHHHG---------GGSCHHHHHHHHHHHHT-TCEEEEETTHHHHHHHHTCCSSCEECCCHHHHHHHHHHCTTSEECTTC
T ss_pred chhhh---------ccCCHHHHHHHHHHHhc-CCEEEEEcHHHHHHHHcCCCCCCeeEECHHHHHHHHHHCCCcEEecCC
Confidence 33211 12478899999999985 999999999999999999999998776221 13555543
Q ss_pred cEEeccCCceEEEeecce
Q psy5570 797 PLKKEKSGVNITRLSITL 814 (875)
Q Consensus 797 ~v~v~~~~~~~~r~pi~~ 814 (875)
.++.+.+ +.|++-|-+-
T Consensus 156 ~~v~Dg~-iiTs~G~~a~ 172 (209)
T 3er6_A 156 KALIDGN-VYLSSGPYSH 172 (209)
T ss_dssp SEEEETT-EEEECCSSCC
T ss_pred EEEEeCC-EEECCcHHHH
Confidence 3555654 6777766443
No 69
>2yyd_A Selenide, water dikinase; FULL-length selenophosphate synthetase, structural genomics, NPPSFA; 1.98A {Aquifex aeolicus} PDB: 2yye_A* 2zod_A 2zau_A
Probab=98.89 E-value=3.9e-10 Score=124.60 Aligned_cols=88 Identities=11% Similarity=-0.148 Sum_probs=69.0
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCccccccc-
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFK- 195 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g- 195 (875)
+.|++|++++ ... +++|++..+. ...|||.+++.||++++++|+|+|+.++. +.+++++- .+
T Consensus 51 GdDaAvi~~~--~~~-lv~ttD~~~~-~~~~p~~~G~~ava~~lsDlaamGa~P~~-~l~~l~~p------------~~~ 113 (345)
T 2yyd_A 51 GDDAGVYEHN--GII-WVYTVDIITP-VVNDPYLWGAISTANALSDVYAMGGIPVN-ALAISCFN------------NCE 113 (345)
T ss_dssp --CCCEEEET--TEE-EEEEEEEECC-SSSCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEEC------------TTT
T ss_pred CCCeEEEEEC--CCe-EEEEeCCCCC-ccCCHHHHHHHHHHHHHHHHHHcCCchHH-HheeEeCC------------CCC
Confidence 4699999985 334 9999999886 77899999999999999999999986654 77777652 12
Q ss_pred Cc-c-hhcccccccccchHHhhhhcCCcccCCC
Q psy5570 196 NH-G-IYDHLDRSQCLPIRYVDDNNKITEDYPM 226 (875)
Q Consensus 196 ~P-~-l~~a~~a~~~~~l~d~~~~lgiP~i~gk 226 (875)
.+ + +-+. ++||.++|+++|+|+|||.
T Consensus 114 ~~~~~l~~i-----~~Gi~~~~~~~gv~lvGGd 141 (345)
T 2yyd_A 114 LDIEIFREV-----IRGALDKLREAKTVLLGGH 141 (345)
T ss_dssp CCHHHHHHH-----HHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHH-----HHHHHHHHHHcCCEEEeeE
Confidence 12 2 3344 9999999999999999754
No 70
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP, antifolate, high-resolution, ternar complex, beta sheet, alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A* 1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A* 1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A* 3bhl_A* 3bhr_A* 3tms_A ...
Probab=98.88 E-value=8.1e-10 Score=117.44 Aligned_cols=50 Identities=64% Similarity=0.976 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++|++|++|+||+|++.
T Consensus 146 C~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~ 195 (264)
T 2g8o_A 146 CHAFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195 (264)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cceEEEEEEECCEEEEEEEhhhhHHHHhhcchHHHHHHHHHHHHHHHCCe
Confidence 89999999999999999999999999999999999999999999999976
No 71
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A {Enterobacteria phage T4} SCOP: d.117.1.1
Probab=98.86 E-value=9.9e-10 Score=117.63 Aligned_cols=50 Identities=46% Similarity=0.655 Sum_probs=49.1
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 156 Ch~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 205 (286)
T 1tis_A 156 CHMFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLI 205 (286)
T ss_dssp SEEEEEEEECSSEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEEEeCCEEEEEEEehhhhHHHhhcchHHHHHHHHHHHHHHHCCe
Confidence 89999999999999999999999999999999999999999999999976
No 72
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A {Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A 1bsp_A 1b02_A*
Probab=98.85 E-value=1.3e-09 Score=116.61 Aligned_cols=50 Identities=46% Similarity=0.722 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++|++|++|+||+|++.
T Consensus 160 C~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~syalL~~miA~~~gl~ 209 (278)
T 1bkp_A 160 CVYETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYE 209 (278)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCE
T ss_pred eeEEEEEEEECCEEEEEEEhhhhHHHhhhhhHHHHHHHHHHHHHHHhCCe
Confidence 89999999999999999999999999999999999999999999999976
No 73
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=98.85 E-value=1.2e-09 Score=118.08 Aligned_cols=50 Identities=70% Similarity=1.040 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 204 Ch~~~qF~V~~gkLs~~lyqRS~D~~lG~PfNiasyalL~~miAq~~Gl~ 253 (321)
T 4dq1_A 204 CHTMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAKECGLE 253 (321)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CceEEEEEEECCEEEEEEEchhhhHHHHhhccHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999976
No 74
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=98.84 E-value=1.2e-09 Score=118.73 Aligned_cols=50 Identities=72% Similarity=1.076 Sum_probs=48.9
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||||..|+|+|.++||||||+||.|||+++|++|++|+|++|++.
T Consensus 197 Ch~~~qf~v~~~~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 246 (315)
T 3uwl_A 197 CHTMFQFYVNEGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAHETGLE 246 (315)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred cceEEEEEECCCeEEEEEEeehhhhhhcccHHHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999976
No 75
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=98.83 E-value=2.8e-09 Score=107.59 Aligned_cols=86 Identities=27% Similarity=0.440 Sum_probs=64.5
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||+|+.+.| +-.+...+|+++|+++..+.. ..+++++|+||||||... .. ..+..+..+.+.
T Consensus 2 m~I~il~~~~--~~~~~~~~l~~~g~~~~~~~~------~~~l~~~d~iil~GG~~~--~~-------~~~~~~~~~~~~ 64 (196)
T 2nv0_A 2 LTIGVLGLQG--AVREHIHAIEACGAAGLVVKR------PEQLNEVDGLILPGGEST--TM-------RRLIDTYQFMEP 64 (196)
T ss_dssp CEEEEECSSS--CCHHHHHHHHHTTCEEEEECS------GGGGGGCSEEEECCSCHH--HH-------HHHHHHTTCHHH
T ss_pred cEEEEEEccC--CcHHHHHHHHHCCCEEEEeCC------hHHHhhCCEEEECCCChh--hH-------HHHhhhHHHHHH
Confidence 6899986533 345667999999998877643 224788999999999742 11 112334566888
Q ss_pred HHHHHHCCCceEEEEehhHHHHHh
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
+++++++ |+|+||||.|+|+|.+
T Consensus 65 i~~~~~~-~~pilgIC~G~q~l~~ 87 (196)
T 2nv0_A 65 LREFAAQ-GKPMFGTCAGLIILAK 87 (196)
T ss_dssp HHHHHHT-TCCEEEETHHHHHHSB
T ss_pred HHHHHHC-CCcEEEECHHHHHHHH
Confidence 9999885 9999999999999987
No 76
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=98.82 E-value=1.5e-09 Score=117.94 Aligned_cols=50 Identities=40% Similarity=0.590 Sum_probs=48.7
Q ss_pred ceEEEEE--EeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQF--YVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~--~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.|| +|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 196 Ch~~~qF~~~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~ 247 (327)
T 3v8h_A 196 CHLLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLTGYS 247 (327)
T ss_dssp SEEEEEEEEETTTTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CceEEEEeeeecCCeEEEEEEeehhhhHhHhhccHHHHHHHHHHHHHHhCCe
Confidence 8999999 9999999999999999999999999999999999999999976
No 77
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=98.81 E-value=1.9e-09 Score=118.93 Aligned_cols=50 Identities=78% Similarity=1.206 Sum_probs=49.0
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 242 Ch~~~qF~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 291 (360)
T 3ix6_A 242 CHCLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLK 291 (360)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTTHHHHHHHHHHHHHHHHHHHTCE
T ss_pred CcEEEEEEEeCCEEEEEEEehhhhHHHhhhhHHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999976
No 78
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=98.81 E-value=3.9e-09 Score=109.18 Aligned_cols=89 Identities=24% Similarity=0.328 Sum_probs=67.0
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHc---CCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhc-
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVC---GFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLN- 744 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~a---G~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~- 744 (875)
++|+|+|+..+| +-.|...+|+++ |+++..+.. ...++++|+||||||.+ +.+. .++.+
T Consensus 2 ~~~~I~Il~~~~--~~~~~~~~l~~~~~~G~~~~~~~~------~~~l~~~dglil~GG~~--~~~~-------~~~~~d 64 (227)
T 2abw_A 2 SEITIGVLSLQG--DFEPHINHFIKLQIPSLNIIQVRN------VHDLGLCDGLVIPGGES--TTVR-------RCCAYE 64 (227)
T ss_dssp CCEEEEEECTTS--CCHHHHHHHHTTCCTTEEEEEECS------HHHHHTCSEEEECCSCH--HHHH-------HHTTHH
T ss_pred CCcEEEEEeCCC--CcHHHHHHHHHhccCCeEEEEEcC------ccccccCCEEEECCCcH--HHHH-------HHHHHh
Confidence 358999986664 346789999999 988776542 23477899999999864 2221 22333
Q ss_pred -hhHHHHHHHHHHCC-CceEEEEehhHHHHHhc
Q psy5570 745 -EGIKTQLNKFIARS-DTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 745 -~~i~~~v~~f~~r~-g~~vLGICnGfQiL~el 775 (875)
..+.+.|+++++ . |+|+||||.|+|+|.+.
T Consensus 65 ~~~~~~~i~~~~~-~~g~PilGIC~G~QlL~~~ 96 (227)
T 2abw_A 65 NDTLYNALVHFIH-VLKKPIWGTCAGCILLSKN 96 (227)
T ss_dssp HHHHHHHHHHHHH-TSCCCEEEETHHHHHTEEE
T ss_pred HHHHHHHHHHHHH-hcCCEEEEECHHHHHHHHH
Confidence 567889999987 6 89999999999999885
No 79
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=98.79 E-value=7.7e-09 Score=108.54 Aligned_cols=130 Identities=12% Similarity=0.218 Sum_probs=92.6
Q ss_pred ccceEEEEEecCCCCCHHHH---HHHHHHcC--CeeEEEEeec--c--------ccc--ccCccCccEEEEcCCc-Cccc
Q psy5570 668 KKVISIAVLREEGINGDREM---SAMAQVCG--FEVWDITVQD--L--------LEN--KITLDRFKGLVFPGGF-SYAD 729 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~~e~---~~A~~~aG--~~v~~V~~~d--l--------~~~--~~~l~~~d~lvlPGGf-S~gD 729 (875)
.+.+||+|++++|++ +.|+ ..+|+.+| +++.+++ .. + ..+ -.+..+||+|++|||. .. +
T Consensus 18 ~~~~kV~ill~dGf~-~~e~~~p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~~g~-~ 94 (236)
T 3bhn_A 18 QGMYKVGIVLFDDFT-DVDFFLMNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGYRGI-P 94 (236)
T ss_dssp --CEEEEEECCTTBC-HHHHHHHHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCTTHH-H
T ss_pred CCCCEEEEEeCCCCh-HHHHHHHHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccccCCCEEEEcCCccCH-h
Confidence 346689999999998 6665 55777766 7888887 41 1 110 0125689999999994 21 1
Q ss_pred cccchhHHHHHHhhchhHHHHHHHHHHCCCc-eEEEEehhHHHHHhcCCCCCCcccccc-------CCCCeEEeccEEec
Q psy5570 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDT-FSFGVCNGCQLMNLLGWFSVSTQARQP-------YIKSRVRCPPLKKE 801 (875)
Q Consensus 730 ~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~-~vLGICnGfQiL~elGlLpg~~~t~~~-------n~~~~f~~~~v~v~ 801 (875)
.+..++.+.+.| ++++ ++ ++.+||.|.++|.++|||.|++.|..+ +.+.++.++.++++
T Consensus 95 ----------~l~~~~~l~~~L--~~~~-~~~~IaaIC~G~~lLa~AGLL~Gr~aTth~~~~~~l~~~~p~~~~~~vV~D 161 (236)
T 3bhn_A 95 ----------AALQDENFMSAL--KLDP-SRQLIGSICAGSFVLHELGLLKGKKLTTNPDAKAVLQGMGGDVQDLPLVIE 161 (236)
T ss_dssp ----------HHHTCHHHHHHC--CCCT-TTCEEEEETTHHHHHHHTTTTTTCEECCCGGGHHHHHHTTCEECSSSEEEE
T ss_pred ----------hhccCHHHHHHH--HhCC-CCCEEEEEcHHHHHHHHcCCCCCCEEECCHHHHHHHHHhCCccCCCcEEEe
Confidence 234577888888 4553 67 999999999999999999999877633 34567777777777
Q ss_pred cCCceEEEeecce
Q psy5570 802 KSGVNITRLSITL 814 (875)
Q Consensus 802 ~~~~~~~r~pi~~ 814 (875)
.+ +.|++-|-+-
T Consensus 162 g~-iiTs~G~~a~ 173 (236)
T 3bhn_A 162 GN-IATAGGCLSL 173 (236)
T ss_dssp TT-EEEECSGGGH
T ss_pred CC-EEECCCHHHH
Confidence 75 7788877543
No 80
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=98.78 E-value=2.3e-09 Score=123.28 Aligned_cols=50 Identities=66% Similarity=1.075 Sum_probs=49.0
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||||..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 397 Ch~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 446 (515)
T 3nrr_A 397 CHCFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLG 446 (515)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CceEEEEEEeCCEEEEEEEchhhhHHHhhhccHHHHHHHHHHHHHHhCCe
Confidence 89999999999999999999999999999999999999999999999976
No 81
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=98.78 E-value=5.8e-09 Score=107.37 Aligned_cols=91 Identities=21% Similarity=0.291 Sum_probs=65.4
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCc--CccccccchhHHHHHHhhchhH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGF--SYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGf--S~gD~l~~s~~~a~ail~~~~i 747 (875)
.|||.++ ++|.+....+.++|+++|+++.++...+ ....+.++|+||||||+ +..|..+ ..| +
T Consensus 13 ~~~i~~i-d~~~~~~~~~~~~l~~~G~~~~vv~~~~---~~~~l~~~DglIl~GG~p~~~~~~~~--~~~---------l 77 (212)
T 2a9v_A 13 MLKIYVV-DNGGQWTHREWRVLRELGVDTKIVPNDI---DSSELDGLDGLVLSGGAPNIDEELDK--LGS---------V 77 (212)
T ss_dssp CCBEEEE-EESCCTTCHHHHHHHHTTCBCCEEETTS---CGGGGTTCSEEEEEEECSCGGGTGGG--HHH---------H
T ss_pred cceEEEE-eCCCccHHHHHHHHHHCCCEEEEEeCCC---CHHHHhCCCEEEECCCCCCCCccccc--chh---------H
Confidence 4688887 7777779999999999999998876532 23456779999999993 4444321 122 2
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
.+.+ .+ .++|+||||.|+|+|..+ ++|.
T Consensus 78 ~~~~---~~-~~~PiLGIC~G~Qll~~~--lGg~ 105 (212)
T 2a9v_A 78 GKYI---DD-HNYPILGICVGAQFIALH--FGAS 105 (212)
T ss_dssp HHHH---HH-CCSCEEEETHHHHHHHHH--TTCE
T ss_pred HHHH---Hh-CCCCEEEEChHHHHHHHH--hCCE
Confidence 2222 35 489999999999999986 4454
No 82
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=98.78 E-value=2.1e-08 Score=104.67 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=75.4
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||++|.-+...+...+...+++.|+++..+....-..-+.+++++|+|||+||-+..+......-|+ ......+.
T Consensus 1 m~i~vi~h~~~e~~g~~~~~l~~~g~~~~~~~~~~~~~~p~~~~~~d~lii~GGp~~~~~~~~~~~~~----~~~~~~~~ 76 (236)
T 3l7n_A 1 MRIHFILHETFEAPGAYLAWAALRGHDVSMTKVYRYEKLPKDIDDFDMLILMGGPQSPSSTKKEFPYY----DAQAEVKL 76 (236)
T ss_dssp CEEEEEECCTTSCCHHHHHHHHHTTCEEEEEEGGGTCCCCSCGGGCSEEEECCCSSCTTCCTTTCTTC----CHHHHHHH
T ss_pred CeEEEEeCCCCCCchHHHHHHHHCCCeEEEEeeeCCCCCCCCccccCEEEECCCCCCcccccccCccc----chHHHHHH
Confidence 68999999999989999999999999998876531111123578999999999987643322211221 11235678
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
|++++++ ++|+||||.|+|+|.++ ++|.
T Consensus 77 i~~~~~~-~~PvLGIClG~QlL~~~--~Gg~ 104 (236)
T 3l7n_A 77 IQKAAKS-EKIIVGVCLGAQLMGVA--YGAD 104 (236)
T ss_dssp HHHHHHT-TCEEEEETHHHHHHHHH--TTCC
T ss_pred HHHHHHc-CCCEEEEchHHHHHHHH--hCCE
Confidence 8888885 99999999999999985 4444
No 83
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.77 E-value=1.5e-08 Score=105.39 Aligned_cols=135 Identities=12% Similarity=0.098 Sum_probs=92.2
Q ss_pred eEEEEEec-----CCCCCHHHH---HHHHHHcCCeeEEEEeec----c----------------------------cccc
Q psy5570 671 ISIAVLRE-----EGINGDREM---SAMAQVCGFEVWDITVQD----L----------------------------LENK 710 (875)
Q Consensus 671 ~kVaIlv~-----pG~n~~~e~---~~A~~~aG~~v~~V~~~d----l----------------------------~~~~ 710 (875)
+||+|+++ +|+. +.|+ +.+|+++|+++.+++... + .-++
T Consensus 7 ~kv~ill~~~~~~~g~~-~~E~~~p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~~~~~~~l~~ 85 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSE-IHEAVLTLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ 85 (232)
T ss_dssp CEEEEECCSBSTTTSBC-HHHHHHHHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTTTTCCEEGGG
T ss_pred CeEEEEEccCCCCCCee-HHHHHHHHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhhhcCCCCHHH
Confidence 48999999 9997 6666 678999999999987641 1 0012
Q ss_pred cCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCC-CCccccc--c
Q psy5570 711 ITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS-VSTQARQ--P 787 (875)
Q Consensus 711 ~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLp-g~~~t~~--~ 787 (875)
.+.++||+|++|||+...+.+..-..-...+..++.+.+.|++|.++ |+++.+||+|.++|.++ |. |++.|.. +
T Consensus 86 ~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-gk~vaaIC~G~~~La~a--L~~Gr~~Tth~~~ 162 (232)
T 1vhq_A 86 ADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQA-GKPLGFMCIAPAMLPKI--FDFPLRLTIGTDI 162 (232)
T ss_dssp CCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHT-TCCEEEETTGGGGHHHH--CSSCCEECCCSCH
T ss_pred cCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHc-CCEEEEECHHHHHHHHH--hcCCCEEeccCCH
Confidence 23467999999999764332221000000112377899999999995 99999999999999999 78 8887663 2
Q ss_pred -------CCCCeEEec---cEEec-cCCceEEE
Q psy5570 788 -------YIKSRVRCP---PLKKE-KSGVNITR 809 (875)
Q Consensus 788 -------n~~~~f~~~---~v~v~-~~~~~~~r 809 (875)
+.+.+|+.. .++++ ..++.|..
T Consensus 163 ~~~~~l~~~g~~~~~~~~~~~~vd~dg~liTs~ 195 (232)
T 1vhq_A 163 DTAEVLEEMGAEHVPCPVDDIVVDEDNKIVTTP 195 (232)
T ss_dssp HHHHHHHHTTCEECCCCTTCCEEETTTTEEEEC
T ss_pred HHHHHHHHcCCEEecCCCCceEEecCCCEEECC
Confidence 234677663 45555 23366665
No 84
>2rb9_A HYPE protein; hydrogenase maturation, dimer, enzyme, X- RAY crystallography, structural genomics, BSGI; 2.00A {Escherichia coli O157} PDB: 2i6r_A
Probab=98.77 E-value=4.7e-10 Score=123.22 Aligned_cols=95 Identities=8% Similarity=-0.113 Sum_probs=67.2
Q ss_pred CcCceEEEEEecC--CcEEEEEEecCCC---cccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcc
Q psy5570 116 PLADVAVVALVHN--DLRGAATSIGEQP---IKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSG 190 (875)
Q Consensus 116 p~sDaaV~~~~~~--~~~g~ams~G~~p---~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~ 190 (875)
++.|++|++++.. +...+++|++..+ +.. +++..++.||++++++|+|+|+.++. +.++++|-
T Consensus 32 ~gdDaavi~~~~~~~~~~~l~~t~D~~~~dp~~~--~~~~iG~~ava~~lsDlaamGA~P~~-~~~~l~~p--------- 99 (334)
T 2rb9_A 32 EQEDQARLDLAQLVAEGDRLAFSTDSYVIDPLFF--PGGNIGKLAICGTANDVAVSGAIPRY-LSCGFILE--------- 99 (334)
T ss_dssp TCCSSEEEEHHHHHHHCSEEEEEEEEECCSSSEE--TTEEHHHHHHHHHHHHHHTTTCCCCE-EEEEEEEE---------
T ss_pred CCCceEEEecCcccCCCceEEEEecCcccCCccC--CcccHHHHHHHHHHHHHHHCCCchHH-hEEEEecC---------
Confidence 4569999997510 0357999999775 332 23366999999999999999997664 66666652
Q ss_pred cccccCcchhcccccccccchHHhhhhcCCcccCCCCC
Q psy5570 191 RFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNP 228 (875)
Q Consensus 191 ~w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkds 228 (875)
.++..+++.+. ++||.++|+++|+|+|||.-+
T Consensus 100 ----~~~~~~~l~~i--~~Gi~~~~~~~g~~lvGGdt~ 131 (334)
T 2rb9_A 100 ----EGLPMETLKAV--VTSMAETARTAGIAIVTGDTK 131 (334)
T ss_dssp ----TTCCHHHHHHH--HHHHHHHHHHTTCEEEEEEEE
T ss_pred ----CCCCHHHHHHH--HHHHHHHHHHcCCEEEeeEeE
Confidence 22222333333 999999999999999976543
No 85
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=98.77 E-value=2.7e-09 Score=122.92 Aligned_cols=50 Identities=72% Similarity=1.147 Sum_probs=49.0
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||||..|+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 403 Ch~~~qf~V~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 452 (521)
T 3irm_A 403 CHLLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452 (521)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CceEEEEEEeCCEEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999999999999999999999999976
No 86
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=98.77 E-value=1.6e-08 Score=107.00 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=74.4
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCc-cccccchhHHHHHHhhchhHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSY-ADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~-gD~l~~s~~~a~ail~~~~i~ 748 (875)
+++|+||.-...++...+..+|++.|+++.++...+-..-+.+++++|+||||||-+. -|.+. |+ ....
T Consensus 3 ~~~vliiqh~~~e~~~~i~~~l~~~G~~v~v~~~~~~~~~p~~~~~~d~lIl~GGp~~~~d~~~----~~------~~~~ 72 (250)
T 3m3p_A 3 LKPVMIIQFSASEGPGHFGDFLAGEHIPFQVLRMDRSDPLPAEIRDCSGLAMMGGPMSANDDLP----WM------PTLL 72 (250)
T ss_dssp CCCEEEEESSSSCCCHHHHHHHHHTTCCEEEEEGGGTCCCCSCGGGSSEEEECCCSSCTTSCCT----TH------HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHCCCeEEEEeccCCCcCcCccccCCEEEECCCCCcccccch----HH------HHHH
Confidence 4579999888888899999999999999988764321111345789999999999753 22222 22 3466
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
+.|++++++ ++|+||||.|+|+|.++ ++|.
T Consensus 73 ~~i~~~~~~-~~PvlGIC~G~Qll~~~--lGG~ 102 (250)
T 3m3p_A 73 ALIRDAVAQ-RVPVIGHCLGGQLLAKA--MGGE 102 (250)
T ss_dssp HHHHHHHHH-TCCEEEETHHHHHHHHH--TTCC
T ss_pred HHHHHHHHc-CCCEEEECHHHHHHHHH--hCCE
Confidence 788888885 99999999999999985 5555
No 87
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=98.76 E-value=3.5e-09 Score=121.97 Aligned_cols=50 Identities=58% Similarity=1.014 Sum_probs=48.9
Q ss_pred ceEEEEEEeeC-CcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVAD-GKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~-g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||||.. |+|+|.++|||||++||.|||+++||+|++|+||+|++.
T Consensus 402 Ch~~~qf~V~~~g~L~~~lyqRS~D~~lG~pfNiasyalL~~miA~~~gl~ 452 (521)
T 3hj3_A 402 CHVLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452 (521)
T ss_dssp SEEEEEEEECTTSEEEEEEEESCCBTTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred ceEEEEEEECCCCcEEEEEEeehhhhhhhhcccHHHHHHHHHHHHHHhCCc
Confidence 99999999999 999999999999999999999999999999999999976
No 88
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=98.76 E-value=8.5e-09 Score=103.62 Aligned_cols=90 Identities=20% Similarity=0.285 Sum_probs=64.8
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCc--cCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITL--DRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l--~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
|.|+|+ +.|..+...+.++|+++|+++.++...+ ...++ .++|+||||||.+ .+. .....
T Consensus 1 mmi~ii-d~~~~~~~~~~~~l~~~G~~~~~~~~~~---~~~~~~~~~~dglil~Gg~~-~~~-------------~~~~~ 62 (189)
T 1wl8_A 1 MMIVIM-DNGGQYVHRIWRTLRYLGVETKIIPNTT---PLEEIKAMNPKGIIFSGGPS-LEN-------------TGNCE 62 (189)
T ss_dssp CEEEEE-ECSCTTHHHHHHHHHHTTCEEEEEETTC---CHHHHHHTCCSEEEECCCSC-TTC-------------CTTHH
T ss_pred CeEEEE-ECCCchHHHHHHHHHHCCCeEEEEECCC---ChHHhcccCCCEEEECCCCC-hhh-------------hhhHH
Confidence 347777 6666668999999999999998876432 11123 3599999999973 222 12346
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
+.++++.+ .++|+||||.|+|+|..+ ++|.
T Consensus 63 ~~i~~~~~-~~~PilGIC~G~Q~l~~~--~gg~ 92 (189)
T 1wl8_A 63 KVLEHYDE-FNVPILGICLGHQLIAKF--FGGK 92 (189)
T ss_dssp HHHHTGGG-TCSCEEEETHHHHHHHHH--HTCE
T ss_pred HHHHHHhh-CCCeEEEEcHHHHHHHHH--hCCc
Confidence 67777766 489999999999999985 4444
No 89
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=98.76 E-value=1.1e-08 Score=108.20 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=66.3
Q ss_pred ceEEEEEecCCCCCH------------HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcC-----cccccc
Q psy5570 670 VISIAVLREEGINGD------------REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFS-----YADALG 732 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~------------~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS-----~gD~l~ 732 (875)
+|.|+|....+.++. .+...+++++|+.+.++...+-..-+..++++|+|+||||.. ||+...
T Consensus 4 ~p~IGi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~pv~lp~~~~~~~~~~l~~~DGlil~GG~~v~P~~yg~~~~ 83 (254)
T 3fij_A 4 KPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIALPIDDPSTAVQAISLVDGLLLTGGQDITPQLYLEEPS 83 (254)
T ss_dssp CCEEEEEC------------------CHHHHHHHHHHTCEEEEECCCCGGGHHHHHHTCSEEEECCCSCCCGGGGTCCCC
T ss_pred CCEEEEeCCcccccccccCCcchhhhhHHHHHHHHHCCCEEEEEeCCCchHHHHHHhhCCEEEECCCCCCChhhcCCccC
Confidence 578888877554432 345789999999998876531111112367899999999955 666543
Q ss_pred chhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 733 ~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
..-+++ .-.++....+.+++++++ ++|+||||.|+|+|..+
T Consensus 84 ~~~~~~-~~~rd~~~~~lir~a~~~-~~PiLGIC~G~Qll~~a 124 (254)
T 3fij_A 84 QEIGAY-FPPRDSYEIALVRAALDA-GKPIFAICRGMQLVNVA 124 (254)
T ss_dssp TTCCCC-CHHHHHHHHHHHHHHHHT-TCCEEEETHHHHHHHHH
T ss_pred cccCCc-ChhhhHHHHHHHHHHHHc-CCCEEEECHHHHHHHHH
Confidence 210000 012233466788888885 99999999999999986
No 90
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=98.75 E-value=5.5e-09 Score=112.72 Aligned_cols=91 Identities=20% Similarity=0.257 Sum_probs=66.1
Q ss_pred cceEEEEEecC-CCCC-HHHHHHHHHHcCCe----eEEEEee--cccc-----ccc-------CccCccEEEEcCCcCcc
Q psy5570 669 KVISIAVLREE-GING-DREMSAMAQVCGFE----VWDITVQ--DLLE-----NKI-------TLDRFKGLVFPGGFSYA 728 (875)
Q Consensus 669 ~~~kVaIlv~p-G~n~-~~e~~~A~~~aG~~----v~~V~~~--dl~~-----~~~-------~l~~~d~lvlPGGfS~g 728 (875)
.++||+|+.++ |..+ ..++.++|+++|++ +.++|+. ++.. +.. .++++|+||||||++
T Consensus 24 ~~~~Iavv~d~~~~~~s~~si~~~L~~~G~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~dgiil~GG~~-- 101 (289)
T 2v4u_A 24 KICSIALVGKYTKLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFG-- 101 (289)
T ss_dssp EEEEEEEEESCSSCCGGGHHHHHHHHHHHHHTTEEEEEEEEEGGGGSHHHHHHCHHHHHHHHHHHHHCSEEEECSCCS--
T ss_pred CceEEEEEecCcCCCccHHHHHHHHHHhhhhhCCceEEEEechhhcccccccCChhhhhhHHHHHhhCCEEEecCCCC--
Confidence 45799998444 7755 78999999998764 4666664 1111 111 267899999999964
Q ss_pred ccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 729 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 729 D~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
|. . + ....+.+++++++ ++|+||||.|+|+|..
T Consensus 102 ~~--~---~-------~~~~~~i~~~~~~-~~PilGIC~G~Q~l~~ 134 (289)
T 2v4u_A 102 IR--G---T-------LGKLQAISWARTK-KIPFLGVXLGMQLAVI 134 (289)
T ss_dssp ST--T---H-------HHHHHHHHHHHHT-TCCEEEETHHHHHHHH
T ss_pred ch--h---H-------HHHHHHHHHHHHc-CCcEEEECccHHHHHH
Confidence 41 1 1 3467788888885 9999999999999998
No 91
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=98.73 E-value=1.8e-08 Score=100.87 Aligned_cols=84 Identities=26% Similarity=0.438 Sum_probs=60.7
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|||+|+..+| +-.+..++|+++|+++..+.. +..++++|+||||||+. +..+ .+.....+.+.
T Consensus 1 m~i~vl~~~g--~~~~~~~~l~~~G~~~~~~~~------~~~~~~~dglil~GG~~--~~~~-------~~~~~~~~~~~ 63 (186)
T 2ywj_A 1 MIIGVLAIQG--DVEEHEEAIKKAGYEAKKVKR------VEDLEGIDALIIPGGES--TAIG-------KLMKKYGLLEK 63 (186)
T ss_dssp CEEEEECSSS--CCHHHHHHHHHTTSEEEEECS------GGGGTTCSEEEECCSCH--HHHH-------HHHHHTTHHHH
T ss_pred CEEEEEecCc--chHHHHHHHHHCCCEEEEECC------hHHhccCCEEEECCCCc--hhhh-------hhhhccCHHHH
Confidence 6899997766 356678999999998877642 33578899999999964 2221 11212334455
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
++ + .++|+||||.|+|+|..+
T Consensus 64 i~---~-~~~PilGIC~G~Qll~~~ 84 (186)
T 2ywj_A 64 IK---N-SNLPILGTCAGMVLLSKG 84 (186)
T ss_dssp HH---T-CCCCEEEETHHHHHHSSC
T ss_pred HH---h-cCCcEEEECHHHHHHHHH
Confidence 44 4 599999999999999986
No 92
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=98.73 E-value=4.7e-08 Score=105.52 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=94.5
Q ss_pred eEEEEEecC--------------CCCCHHHH---HHHHHHcCCeeEEEEeec--cc------------------------
Q psy5570 671 ISIAVLREE--------------GINGDREM---SAMAQVCGFEVWDITVQD--LL------------------------ 707 (875)
Q Consensus 671 ~kVaIlv~p--------------G~n~~~e~---~~A~~~aG~~v~~V~~~d--l~------------------------ 707 (875)
+||+|++.. |+. +.|+ +.+|+++|+++.+++... +.
T Consensus 49 kkIlivlt~~~~~~~~~g~~~~~G~~-~~E~~~p~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l 127 (291)
T 1n57_A 49 HKILVIAADERYLPTDNGKLFSTGNH-PIETLLPLYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLF 127 (291)
T ss_dssp CEEEEECCSCCEEECTTSCEEECCBC-HHHHHHHHHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHH
T ss_pred CEEEEEeCCcccccccCCccCCCCCc-HHHHHHHHHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhcccee
Confidence 389999875 344 5565 668999999999997531 10
Q ss_pred -c----ccc-----CccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcC-
Q psy5570 708 -E----NKI-----TLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG- 776 (875)
Q Consensus 708 -~----~~~-----~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG- 776 (875)
. ++. +.++||+|++|||......+. .++.+.+.|++|.++ |++|.+||+|.++|++++
T Consensus 128 ~~~~~l~~v~~~~~~~~~yD~livPGG~g~~~~l~----------~~~~l~~~l~~~~~~-gk~VaaIC~Gp~~La~a~~ 196 (291)
T 1n57_A 128 RNPKKLADVVASLNADSEYAAIFVPGGHGALIGLP----------ESQDVAAALQWAIKN-DRFVISLCHGPAAFLALRH 196 (291)
T ss_dssp HSCEEHHHHHHTCCTTCSEEEEEECCSGGGGSSGG----------GCHHHHHHHHHHHHT-TCEEEEETTGGGGGGGGTT
T ss_pred cCCccHHHHhhhccCcccCCEEEecCCcchhhhhh----------hCHHHHHHHHHHHHc-CCEEEEECccHHHHHhhcc
Confidence 0 011 357899999999954321232 378899999999985 999999999999999985
Q ss_pred ---CCCCCccccccCC--------------------------CCeEE----eccEEeccCCceEEEeecce
Q psy5570 777 ---WFSVSTQARQPYI--------------------------KSRVR----CPPLKKEKSGVNITRLSITL 814 (875)
Q Consensus 777 ---lLpg~~~t~~~n~--------------------------~~~f~----~~~v~v~~~~~~~~r~pi~~ 814 (875)
||.|++.|..++. +.+|+ +..|++|.+ +.|.+-|-+-
T Consensus 197 ~~GLL~Gr~~Tt~~~~~e~~~~~~~~~~~~~P~~le~~L~~~ga~~~~~~~~~~vV~Dg~-lITs~gp~s~ 266 (291)
T 1n57_A 197 GDNPLNGYSICAFPDAADKQTPEIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRK-LLTGDSPFAA 266 (291)
T ss_dssp SCCTTTTCEECCCCGGGGGTTTTTTSSSSCCSSCHHHHHHHTTCEECCSSCSCCEEEETT-EEEESSGGGH
T ss_pred cCccCCCCEEEeCCCHHHhhhccccccccccchhHHHHHHHCCCEEECCCCCCCEEEeCC-EEECCCHHHH
Confidence 9999987764332 34666 566777765 7777776654
No 93
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=98.72 E-value=1.6e-08 Score=118.24 Aligned_cols=92 Identities=20% Similarity=0.187 Sum_probs=65.2
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
..+|+|| +.|+++.+.++++++++|..++++... ....+....++|+||||||.+.....+. +.+..
T Consensus 7 ~~~Ilil-D~Gs~~~~~I~r~lre~Gv~~eiv~~~-~~~~~i~~~~~dgIIlsGGp~s~~~~~~-----------~~~~~ 73 (556)
T 3uow_A 7 YDKILVL-NFGSQYFHLIVKRLNNIKIFSETKDYG-VELKDIKDMNIKGVILSGGPYSVTEAGS-----------PHLKK 73 (556)
T ss_dssp CCEEEEE-ESSCTTHHHHHHHHHHTTCCEEEEETT-CCGGGTTTSCEEEEEECCCSCCTTSTTC-----------CCCCH
T ss_pred CCEEEEE-ECCCccHHHHHHHHHHCCCeEEEEECC-CCHHHHhhcCCCEEEECCCCCcccccCC-----------cchhH
Confidence 3578887 999999999999999999999888753 1111222237899999999864322111 12223
Q ss_pred HH-HHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QL-NKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v-~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+ +.+.+ .|+|+||||+|||+|+.+
T Consensus 74 ~l~~~a~~-~g~PvLGIC~G~QlLa~~ 99 (556)
T 3uow_A 74 EVFEYFLE-KKIPIFGICYGMQEIAVQ 99 (556)
T ss_dssp HHHHHHHH-TTCCEEEETHHHHHHHHH
T ss_pred HHHHHhhh-cCCCEEEECHHHHHHHHH
Confidence 33 33455 499999999999999983
No 94
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=98.72 E-value=4.8e-09 Score=110.66 Aligned_cols=50 Identities=22% Similarity=0.216 Sum_probs=48.7
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHH-----HHHHHHHHHHhh--cccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIA-----SYSLLTYMIAHV--TGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~-----qya~l~~~~a~~--~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||++ +|++|++|+||+ |++.
T Consensus 148 C~~~~qF~V~~gkL~~~lyqRS~D~~lG~pfNi~~~~~~syalL~~miA~~~~~gl~ 204 (246)
T 1b5e_A 148 CTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDSTRQYK 204 (246)
T ss_dssp CEEEEEEEEETTEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHCTTCCCE
T ss_pred eeEEEEEEEECCEEEEEEEhhhhhhhhhccchHHHhhhHHHHHHHHHHhhhhccCCc
Confidence 8999999999999999999999999999999999 999999999999 8876
No 95
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.72 E-value=3.7e-08 Score=116.45 Aligned_cols=99 Identities=13% Similarity=0.045 Sum_probs=80.4
Q ss_pred cceEEEEEecCC-CCCH---HHHHHHHHHcCCeeEEEEee-----cccccccCccCccEEEEcCCcCc-------ccccc
Q psy5570 669 KVISIAVLREEG-INGD---REMSAMAQVCGFEVWDITVQ-----DLLENKITLDRFKGLVFPGGFSY-------ADALG 732 (875)
Q Consensus 669 ~~~kVaIlv~pG-~n~~---~e~~~A~~~aG~~v~~V~~~-----dl~~~~~~l~~~d~lvlPGGfS~-------gD~l~ 732 (875)
...||+||+..| ++ + ..+..||+++|++|.+|..+ |..-......+||+||||||... .|.|+
T Consensus 536 ~grKVaILvadG~fE-~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~Lr 614 (688)
T 3ej6_A 536 ATLRVGVLSTTKGGS-LDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPLF 614 (688)
T ss_dssp TTCEEEEECCSSSSH-HHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTTS
T ss_pred cCCEEEEEccCCCcc-HHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhhc
Confidence 456899999999 44 2 34578999999999999764 33333445678999999999864 37776
Q ss_pred chhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCC
Q psy5570 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 779 (875)
Q Consensus 733 ~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLp 779 (875)
. ++.+++.|++|++. +|||.+||+|.|+|.++|+-.
T Consensus 615 ~----------~~~a~~fV~e~~~h-gKpIAAIchgp~lL~~AGI~~ 650 (688)
T 3ej6_A 615 P----------AGRPSQILTDGYRW-GKPVAAVGSAKKALQSIGVEE 650 (688)
T ss_dssp C----------TTHHHHHHHHHHHT-TCCEEEEGGGHHHHHHTTCCS
T ss_pred c----------CHHHHHHHHHHHHc-CCEEEEeCccHHHHHHcCCCC
Confidence 6 88999999999984 999999999999999999843
No 96
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=98.71 E-value=1.3e-08 Score=108.96 Aligned_cols=89 Identities=19% Similarity=0.194 Sum_probs=66.7
Q ss_pred eEEEEEecCC---CCCHHHHHHHHHHcC----CeeEEEEeec--cccc----c-cCccCccEEEEcCCcCccccccchhH
Q psy5570 671 ISIAVLREEG---INGDREMSAMAQVCG----FEVWDITVQD--LLEN----K-ITLDRFKGLVFPGGFSYADALGSAKG 736 (875)
Q Consensus 671 ~kVaIlv~pG---~n~~~e~~~A~~~aG----~~v~~V~~~d--l~~~----~-~~l~~~d~lvlPGGfS~gD~l~~s~~ 736 (875)
++|+|+-++| ..+-.++.+||+.+| .++.+++..+ +... . ..++++|+||||||+ ++. .
T Consensus 9 ~~Iaivg~y~~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~--~~~--~--- 81 (273)
T 2w7t_A 9 VRIAFVGKYLQDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGF--GNR--G--- 81 (273)
T ss_dssp EEEEEEECCHHHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCC--TTT--T---
T ss_pred CEEEEEeCCCcCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCC--CCc--C---
Confidence 6899998998 888889988887754 5678887763 2221 1 346789999999995 442 1
Q ss_pred HHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 737 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 737 ~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
+ ....+.++.++++ ++|+||||.|+|+|..
T Consensus 82 ~-------~~~~~~i~~~~~~-~~PilGIC~G~Qll~~ 111 (273)
T 2w7t_A 82 V-------DGKCAAAQVARMN-NIPYFGVXLGMQVAVI 111 (273)
T ss_dssp H-------HHHHHHHHHHHHH-TCCEEEETHHHHHHHH
T ss_pred c-------hhHHHHHHHHHHC-CCcEEEECcCHHHHHH
Confidence 1 1355677888774 8999999999999987
No 97
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=98.71 E-value=5.5e-09 Score=121.48 Aligned_cols=50 Identities=70% Similarity=1.079 Sum_probs=49.0
Q ss_pred ceEEEEEEeeCCcccccccccccccccchhHHHHHHHHHHHHHHhhcccc
Q psy5570 304 KTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353 (875)
Q Consensus 304 ~s~laq~~v~~g~l~~~l~qrS~D~~Lg~~fn~~qya~l~~~~a~~~~l~ 353 (875)
||++.||+|..|+|+|.++|||||++||.|||+++|++|++|+||+|++.
T Consensus 490 Ch~~~qF~V~~gkL~~~lyqRS~D~~lG~PfNiasyalL~~miA~~~gl~ 539 (608)
T 3qg2_A 490 CHILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539 (608)
T ss_dssp SEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred ceEEEEEEEeCCeEEEEEEeehhhhhhhhhccHHHHHHHHHHHHHHhCCe
Confidence 99999999999999999999999999999999999999999999999976
No 98
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=98.71 E-value=2.7e-08 Score=104.23 Aligned_cols=99 Identities=13% Similarity=0.249 Sum_probs=72.7
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCc--CccccccchhHHHHHHhhchhHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGF--SYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGf--S~gD~l~~s~~~a~ail~~~~i~ 748 (875)
.||.|+.-....+...+.++|+..|.++.++...+...-+..++++|+||||||. .|++.. ..|. ....
T Consensus 13 ~~~~~i~~~~~~~~~~i~~~l~~~G~~v~v~~~~~~~~~~~~l~~~Dglil~GG~~~~~~~~~---~~~l------~~~~ 83 (239)
T 1o1y_A 13 VRVLAIRHVEIEDLGMMEDIFREKNWSFDYLDTPKGEKLERPLEEYSLVVLLGGYMGAYEEEK---YPFL------KYEF 83 (239)
T ss_dssp CEEEEECSSTTSSCTHHHHHHHHTTCEEEEECGGGTCCCSSCGGGCSEEEECCCSCCTTCTTT---CTHH------HHHH
T ss_pred eEEEEEECCCCCCchHHHHHHHhCCCcEEEeCCcCccccccchhcCCEEEECCCCccccCCcc---ChhH------HHHH
Confidence 3788888888888889999999999998866544311113457899999999976 333321 1232 2567
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
+.+++++++ ++|+||||.|+|+|..+ ++|.
T Consensus 84 ~~i~~~~~~-~~PiLGIC~G~QlL~~a--lGG~ 113 (239)
T 1o1y_A 84 QLIEEILKK-EIPFLGICLGSQMLAKV--LGAS 113 (239)
T ss_dssp HHHHHHHHH-TCCEEEETHHHHHHHHH--TTCC
T ss_pred HHHHHHHHC-CCCEEEEchhHHHHHHH--cCCe
Confidence 788888875 89999999999999986 4454
No 99
>2zod_A Selenide, water dikinase; FULL-length selenophosphate synthetase, transferase, ATP- binding, magnesium, nucleotide-binding, selenium; 1.98A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 2yye_A 2zau_A
Probab=98.70 E-value=9.9e-09 Score=113.04 Aligned_cols=90 Identities=12% Similarity=-0.186 Sum_probs=65.5
Q ss_pred cCceEEEEEecCCcEEEEEEecCCCcccccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccccccC
Q psy5570 117 LADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRFAFKN 196 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w~~g~ 196 (875)
+.||||++++ ...+++|++...... .|||..++.||+.++++|+|+|+.++. +.++++|- +...
T Consensus 51 GDDaAvi~~~---~~~lv~ttD~~~~~v-~~P~~~G~~Av~~~lsDiaAmGa~P~~-~l~~l~~p-----------~~~~ 114 (345)
T 2zod_A 51 GDDAGVYEHN---GIIWVYTVDIITPVV-NDPYLWGAISTANALSDVYAMGGIPVN-ALAISCFN-----------NCEL 114 (345)
T ss_dssp --CCCEEEET---TEEEEEEEEEECCSS-SCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEEC-----------TTTC
T ss_pred CCCeEEEecC---CcEEEEEecCCCCcc-cCHHHHHHHHHHHHHHHHHHcCCCchh-hhhhhhcC-----------CCcC
Confidence 4699999853 467888999776544 589999999999999999999986554 55666552 0011
Q ss_pred cchhcccccccccchHHhhhhcCCcccCC
Q psy5570 197 HGIYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 197 P~l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
+ .+.+.+. .+||.++|+++|+|+|||
T Consensus 115 ~-~~~l~~~--~~Gi~~~~~~~gv~lvGG 140 (345)
T 2zod_A 115 D-IEIFREV--IRGALDKLREAKTVLLGG 140 (345)
T ss_dssp C-HHHHHHH--HHHHHHHHHHTTCEEEEE
T ss_pred C-HHHHHHH--HHHHHHHHHhccCcccCC
Confidence 2 2222222 899999999999999975
No 100
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.70 E-value=3.6e-08 Score=117.25 Aligned_cols=96 Identities=8% Similarity=-0.003 Sum_probs=78.4
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEee--------------cccccccCccCccEEEEcCCcCccccc
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQ--------------DLLENKITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~--------------dl~~~~~~l~~~d~lvlPGGfS~gD~l 731 (875)
...||+||+.+|++ +.|+ ..+|+++|++|.+|+.. |..-.+....+||+|||||| ..+.+
T Consensus 599 ~grKVaILlaDGfE-e~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG--g~~~L 675 (753)
T 3ttv_A 599 KGRVVAILLNDEVR-SADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG--NIADI 675 (753)
T ss_dssp TTCEEEEECCTTCC-HHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS--CGGGT
T ss_pred CCCEEEEEecCCCC-HHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC--ChHHh
Confidence 45689999999999 5443 77999999999999764 22222334457999999999 46777
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCC
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlL 778 (875)
+. ++.+.+.|++|++. +|+|.+||.|.|+|.++||-
T Consensus 676 r~----------d~~vl~~Vre~~~~-gKpIAAIC~Gp~lLa~AGL~ 711 (753)
T 3ttv_A 676 AD----------NGDANYYLMEAYKH-LKPIALAGDARKFKATIKIA 711 (753)
T ss_dssp TT----------CHHHHHHHHHHHHT-TCCEEEEGGGGGGGGGGTCC
T ss_pred hh----------CHHHHHHHHHHHhc-CCeEEEECchHHHHHHcCCC
Confidence 66 88999999999985 99999999999999999984
No 101
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=98.67 E-value=2.3e-08 Score=101.22 Aligned_cols=93 Identities=12% Similarity=0.085 Sum_probs=63.7
Q ss_pred eE-EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCcc--CccEEEEcCC-cCccccccchhHHHHHHhhchh
Q psy5570 671 IS-IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLD--RFKGLVFPGG-FSYADALGSAKGWAASLLLNEG 746 (875)
Q Consensus 671 ~k-VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~--~~d~lvlPGG-fS~gD~l~~s~~~a~ail~~~~ 746 (875)
|| |+||-+.++. ...+.++|+++|+++.++...+.. ..+++ ++|+|||+|| ++..+..+ ..-
T Consensus 1 m~mi~iid~~~s~-~~~~~~~l~~~G~~~~v~~~~~~~--~~~~~~~~~dglil~gG~~~~~~~~~-----------~~~ 66 (195)
T 1qdl_B 1 MDLTLIIDNYDSF-VYNIAQIVGELGSYPIVIRNDEIS--IKGIERIDPDRLIISPGPGTPEKRED-----------IGV 66 (195)
T ss_dssp CCEEEEEECSCSS-HHHHHHHHHHTTCEEEEEETTTSC--HHHHHHHCCSEEEECCCSSCTTSHHH-----------HTT
T ss_pred CCEEEEEECCCch-HHHHHHHHHhCCCEEEEEeCCCCC--HHHHhhCCCCEEEECCCCCChhhhhh-----------hhH
Confidence 45 8888666665 678899999999999887643211 11233 6999999666 55443311 112
Q ss_pred HHHHHHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 747 IKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 747 i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
..+.++++ + .++|+||||.|+|+|..+ ++|.
T Consensus 67 ~~~~i~~~-~-~~~PvLGIC~G~QlL~~~--~gg~ 97 (195)
T 1qdl_B 67 SLDVIKYL-G-KRTPILGVCLGHQAIGYA--FGAK 97 (195)
T ss_dssp HHHHHHHH-T-TTSCEEEETHHHHHHHHH--TTCE
T ss_pred HHHHHHHh-c-CCCcEEEEehHHHHHHHH--hCCE
Confidence 34566664 5 499999999999999986 5554
No 102
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=98.67 E-value=1.4e-08 Score=118.87 Aligned_cols=92 Identities=16% Similarity=0.280 Sum_probs=71.5
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
.|+|+|+ ++|.++..+..++|+++|+++.++...+ ...++++|+||||||++..+.+. .+++..+.+
T Consensus 4 m~~I~Ii-d~~~g~~~~~~~~l~~~G~~~~vv~~~~----~~~l~~~DglILpGgG~~~~~~~--------~l~~~~~~~ 70 (555)
T 1jvn_A 4 MPVVHVI-DVESGNLQSLTNAIEHLGYEVQLVKSPK----DFNISGTSRLILPGVGNYGHFVD--------NLFNRGFEK 70 (555)
T ss_dssp SCEEEEE-CCSCSCCHHHHHHHHHTTCEEEEESSGG----GCCSTTCSCEEEEECSCHHHHHH--------HHHHTTCHH
T ss_pred CCEEEEE-ECCCCCHHHHHHHHHHCCCEEEEECCcc----ccccccCCEEEECCCCchHhHhh--------hhhhccHHH
Confidence 4689988 6776678899999999999988765221 12478999999999877655332 233456788
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+++++++ |+|+||||.|+|+|..+
T Consensus 71 ~i~~~~~~-g~PiLGIC~G~QlL~~a 95 (555)
T 1jvn_A 71 PIREYIES-GKPIMGIXVGLQALFAG 95 (555)
T ss_dssp HHHHHHHT-TCCEEEEEHHHHTTEEE
T ss_pred HHHHHHHc-CCcEEEEchhhhhhhhh
Confidence 89999885 99999999999999984
No 103
>2z1u_A Hydrogenase expression/formation protein HYPE; alpha-beta fold, beta barrel, lyase; HET: ATP; 2.00A {Desulfovibrio vulgaris subsp} PDB: 2z1t_A*
Probab=98.63 E-value=5.9e-09 Score=114.82 Aligned_cols=89 Identities=13% Similarity=-0.042 Sum_probs=65.3
Q ss_pred CcCceEEEEEecCCcEEEEEEecCCCcccccCHHHH-----HHHHHHHHHhhccccCCcccccceeccccccccccCCcc
Q psy5570 116 PLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRG-----ARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSG 190 (875)
Q Consensus 116 p~sDaaV~~~~~~~~~g~ams~G~~p~~~~~dPy~G-----A~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~ 190 (875)
++.|++|++++ . .+++|++..+ .|||.+ ++.||++++++|+|+|+.++. +.++++|-
T Consensus 38 ~GdDaav~~~~---~-~lv~ttD~~~----~~p~~~~~~~iG~~ava~~lsDlaamGA~P~~-~~~~l~~p--------- 99 (343)
T 2z1u_A 38 TLNDAARLDLT---G-PLAMSTDSYT----VDPIFFPGGDIGTLAVHGTVNDVSMLGARPRY-LSCGFILE--------- 99 (343)
T ss_dssp TCSSSCCCCCC---S-SEEEEEEEEC----CSSSEETTEEHHHHHHHHHHHHHHTTTEEEEE-EEEEEEEE---------
T ss_pred CCCceEEEECC---C-eEEEEeCCCC----cCCeecCCccHHHHHHHHHHHHHHHcCCeeHH-hheeeecC---------
Confidence 34699999875 3 7899998775 455555 999999999999999986654 77776652
Q ss_pred cccccCcchhcccccccccchHHhhhhcCCcccCCCCC
Q psy5570 191 RFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNP 228 (875)
Q Consensus 191 ~w~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkds 228 (875)
.++...++.+. ++||.++|+++|+|+|||.-+
T Consensus 100 ----~~~~~~~l~~i--~~Gi~~~~~~~g~~lvGGdt~ 131 (343)
T 2z1u_A 100 ----EGLDMDILERV--VASMGKAAREAGVFIVTGDTK 131 (343)
T ss_dssp ----TTCCHHHHHHH--HHHHHHHHHHHTCEEEEEEEE
T ss_pred ----CCCCHHHHHHH--HHHHHHHHHHhCCEEECcEEE
Confidence 12221122222 999999999999999976554
No 104
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=98.57 E-value=4.9e-08 Score=106.54 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=67.1
Q ss_pred cceEEEEEecCCCCCH----------HHHHHHHHHcCCeeEEEEeec-ccccccCccCccEEEEcCCcCccccccchhHH
Q psy5570 669 KVISIAVLREEGINGD----------REMSAMAQVCGFEVWDITVQD-LLENKITLDRFKGLVFPGGFSYADALGSAKGW 737 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~----------~e~~~A~~~aG~~v~~V~~~d-l~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~ 737 (875)
.+|.|+|+..++.++. .+..++|+++|+++.++...+ ...-+..++++|+||||||++..+... |
T Consensus 29 ~~P~IGI~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~~~~i~~~l~~~dglil~GG~~~v~p~~----~ 104 (315)
T 1l9x_A 29 KKPIIGILMQKCRNKVMKNYGRYYIAASYVKYLESAGARVVPVRLDLTEKDYEILFKSINGILFPGGSVDLRRSD----Y 104 (315)
T ss_dssp CCCEEEEECEECCSHHHHTTCSEEEEHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHHSSEEEECCCCCCTTTCH----H
T ss_pred CCCEEEEECCcccccccccCcceehHHHHHHHHHHCCCEEEEEecCCCHHHHHHHHhcCCEEEEeCCCcccChhh----h
Confidence 4689999988776541 256899999999998876531 000011246899999999974322110 1
Q ss_pred HHHHhhchhHHHHHHHHHHCC-CceEEEEehhHHHHHhc
Q psy5570 738 AASLLLNEGIKTQLNKFIARS-DTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 738 a~ail~~~~i~~~v~~f~~r~-g~~vLGICnGfQiL~el 775 (875)
+.. ...+.+.++++.++. ++|+||||.|+|+|..+
T Consensus 105 -~~~--~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a 140 (315)
T 1l9x_A 105 -AKV--AKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLL 140 (315)
T ss_dssp -HHH--HHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHH
T ss_pred -hHH--HHHHHHHHHHHHhcCCCceEEEEChHHHHHHHH
Confidence 111 135667777777642 49999999999999983
No 105
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=98.49 E-value=2.3e-08 Score=103.47 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=58.2
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
++|+|| +.|..+...+.++|+++|+++.++....- ..+....++|+||||||.+.....+. .| +
T Consensus 25 ~~I~ii-D~g~~~~~~i~~~l~~~G~~~~vv~~~~~-~~~l~~~~~dglil~Gg~~~~~~~~~--~~---------~--- 88 (218)
T 2vpi_A 25 GAVVIL-DAGAQYGKVIDRRVRELFVQSEIFPLETP-AFAIKEQGFRAIIISGGPNSVYAEDA--PW---------F--- 88 (218)
T ss_dssp TCEEEE-ECSTTTTHHHHHHHHHTTCCEEEECTTCC-HHHHHHHTCSEEEEEC---------C--CC---------C---
T ss_pred CeEEEE-ECCCchHHHHHHHHHHCCCEEEEEECCCC-hHHHhhcCCCEEEECCCCcccccccc--hh---------H---
Confidence 478887 66666678899999999999988765310 01111246999999999853221111 11 1
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhcCCCCCC
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLLGWFSVS 781 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~elGlLpg~ 781 (875)
.+++++ .++|+||||.|+|+|..+ ++|.
T Consensus 89 ~~~~~~-~~~PilGIC~G~Qll~~~--~GG~ 116 (218)
T 2vpi_A 89 DPAIFT-IGKPVLGICYGMQMMNKV--FGGT 116 (218)
T ss_dssp CGGGGT-SSCCEEEETHHHHHHHHH--TTCC
T ss_pred HHHHHH-cCCCEEEEcHHHHHHHHH--hCCc
Confidence 122345 489999999999999995 5665
No 106
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=98.49 E-value=2.9e-07 Score=110.04 Aligned_cols=121 Identities=11% Similarity=0.024 Sum_probs=89.1
Q ss_pred cceEEEEEecCCCCCHHHH---HHHHHHcCCeeEEEEeec--------------ccccccCccCccEEEEcCCcCccccc
Q psy5570 669 KVISIAVLREEGINGDREM---SAMAQVCGFEVWDITVQD--------------LLENKITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~---~~A~~~aG~~v~~V~~~d--------------l~~~~~~l~~~d~lvlPGGfS~gD~l 731 (875)
..+||+|++++|+. +.|+ ..+|+.+|+++.+++... ..-++....+||+||+|||....+
T Consensus 533 ~~rkVaILl~dGfe-~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~-- 609 (715)
T 1sy7_A 533 KSRRVAIIIADGYD-NVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAE-- 609 (715)
T ss_dssp TTCEEEEECCTTBC-HHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHH--
T ss_pred CCCEEEEEEcCCCC-HHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHh--
Confidence 44789999999998 5444 778999999999997641 111122345799999999952122
Q ss_pred cchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc-CCCCCCccccccCCCCeEEeccEEeccCCceEEEe
Q psy5570 732 GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL-GWFSVSTQARQPYIKSRVRCPPLKKEKSGVNITRL 810 (875)
Q Consensus 732 ~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el-GlLpg~~~t~~~n~~~~f~~~~v~v~~~~~~~~r~ 810 (875)
.+..++.+.+.|++++++ |++|.+||+|.++|.++ ||. .+.+.++ +.|+++.+ +.|.+-
T Consensus 610 --------~l~~~~~l~~~Lr~~~~~-gK~IaAIC~G~~lLA~AlGL~------~L~~aGa----~~VVvDg~-lITs~g 669 (715)
T 1sy7_A 610 --------TLSKNGRALHWIREAFGH-LKAIGATGEAVDLVAKAIALP------QVTVSSE----AEVHESYG-VVTLKK 669 (715)
T ss_dssp --------HHHTCHHHHHHHHHHHHT-TCEEEEETTHHHHHHHHHCCT------TSCCCCS----SSCEEETT-EEEESS
T ss_pred --------hhccCHHHHHHHHHHHhC-CCEEEEECHHHHHHHHccCcH------hHHhcCC----CcEEEeCC-EEECCC
Confidence 234478899999999985 99999999999999999 983 2444444 56666664 777777
Q ss_pred ec
Q psy5570 811 SI 812 (875)
Q Consensus 811 pi 812 (875)
|-
T Consensus 670 p~ 671 (715)
T 1sy7_A 670 VK 671 (715)
T ss_dssp CC
T ss_pred Cc
Confidence 63
No 107
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.49 E-value=2.5e-07 Score=109.59 Aligned_cols=100 Identities=12% Similarity=0.033 Sum_probs=80.4
Q ss_pred cceEEEEEec--CCCCCH--HHHHHHHHHcCCeeEEEEee-----cccccccCccCccEEEEcCCcCc------------
Q psy5570 669 KVISIAVLRE--EGINGD--REMSAMAQVCGFEVWDITVQ-----DLLENKITLDRFKGLVFPGGFSY------------ 727 (875)
Q Consensus 669 ~~~kVaIlv~--pG~n~~--~e~~~A~~~aG~~v~~V~~~-----dl~~~~~~l~~~d~lvlPGGfS~------------ 727 (875)
+..||+|++. .|++.. ..+..+|+++|++|++|..+ |..-+..+..+||+||||||...
T Consensus 528 ~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~~ 607 (688)
T 2iuf_A 528 DGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEPS 607 (688)
T ss_dssp TTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCCC
T ss_pred CCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccccccccccc
Confidence 4468999998 787733 34588999999999999874 33333445678999999999643
Q ss_pred ----cccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCCC
Q psy5570 728 ----ADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFS 779 (875)
Q Consensus 728 ----gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlLp 779 (875)
.|.|+. +..+.+.|+++++. ||||.+||.|.|+|.++|+..
T Consensus 608 ~~~~~~~L~~----------~~~~~~~v~~~~~~-gKpIaAIc~ap~vL~~aGi~~ 652 (688)
T 2iuf_A 608 AGSGASTLYP----------AGRPLNILLDAFRF-GKTVGALGSGSDALESGQISS 652 (688)
T ss_dssp TTSCCCSSSC----------TTHHHHHHHHHHHH-TCEEEEEGGGHHHHHHTTCCT
T ss_pred cccchhhccc----------ChHHHHHHHHHHHc-CCEEEEECchHHHHHHcCCCC
Confidence 455655 88899999999985 999999999999999999964
No 108
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.48 E-value=3.9e-08 Score=102.61 Aligned_cols=95 Identities=12% Similarity=0.087 Sum_probs=73.1
Q ss_pred cceEEEEEecCCC------CCHHHHHHHHHHcCCeeEEEEeecccccc-cCccCccEEEEcCCcCccccccchhHHHHHH
Q psy5570 669 KVISIAVLREEGI------NGDREMSAMAQVCGFEVWDITVQDLLENK-ITLDRFKGLVFPGGFSYADALGSAKGWAASL 741 (875)
Q Consensus 669 ~~~kVaIlv~pG~------n~~~e~~~A~~~aG~~v~~V~~~dl~~~~-~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ai 741 (875)
..+||++| .+++ ++..++.+||++.|+++..+... .+. ..|+++|+|+||||-+ .+. ...
T Consensus 30 ~~~~i~iI-~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~---~d~~~~l~~ad~I~lpGG~~-~~~--------~~~ 96 (229)
T 1fy2_A 30 GRRSAVFI-PFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRV---ADPLAAIEKAEIIIVGGGNT-FQL--------LKE 96 (229)
T ss_dssp TCCEEEEE-CTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSS---SCHHHHHHHCSEEEECCSCH-HHH--------HHH
T ss_pred CCCeEEEE-ECCCCCCCHHHHHHHHHHHHHHCCCEEEEEecc---ccHHHHHhcCCEEEECCCcH-HHH--------HHH
Confidence 35689987 8876 45677789999999987765321 112 4588999999999543 343 445
Q ss_pred hhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCC
Q psy5570 742 LLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGW 777 (875)
Q Consensus 742 l~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGl 777 (875)
++...+.+.|++++++ |+|++|||.|+|+|++...
T Consensus 97 l~~~gl~~~l~~~~~~-G~p~~G~sAG~~~l~~~~~ 131 (229)
T 1fy2_A 97 SRERGLLAPMADRVKR-GALYIGWSAGANLACPTIR 131 (229)
T ss_dssp HHHTTCHHHHHHHHHT-TCEEEEETHHHHHTSSBST
T ss_pred HHHCChHHHHHHHHHc-CCEEEEECHHHHhhcccce
Confidence 7778999999999985 9999999999999998643
No 109
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=98.47 E-value=1.6e-07 Score=109.16 Aligned_cols=106 Identities=15% Similarity=0.140 Sum_probs=67.7
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccC--ccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDR--FKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~--~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
.||+|| +.|+.+...++++++++|..++++... .....+.+ +|+||||||.+.. .+. ...
T Consensus 11 ~~I~Il-D~g~~~~~~i~r~lr~~Gv~~~i~p~~---~~~~~i~~~~~dgIILsGGp~sv--~~~------------~~~ 72 (527)
T 3tqi_A 11 HRILIL-DFGSQYAQLIARRVREIGVYCELMPCD---IDEETIRDFNPHGIILSGGPETV--TLS------------HTL 72 (527)
T ss_dssp SEEEEE-ECSCTTHHHHHHHHHHHTCEEEEEETT---CCSSSSTTTCCSEEEECCCCC----------------------
T ss_pred CeEEEE-ECCCccHHHHHHHHHHCCCeEEEEECC---CCHHHHHhcCCCEEEECCcCccc--ccC------------CCh
Confidence 478887 889998999999999999999887642 12233444 4999999997632 111 111
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCccccccCCCCeEEeccEEe
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIKSRVRCPPLKK 800 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~~t~~~n~~~~f~~~~v~v 800 (875)
...+++++ .|+|+||||.|+|+|+.+ ++|.+ .++....|-...+.+
T Consensus 73 ~~~~~~~~-~~~PvLGIC~G~Qlla~~--lGG~V---~~~~~~e~G~~~v~~ 118 (527)
T 3tqi_A 73 RAPAFIFE-IGCPVLGICYGMQTMAYQ--LGGKV---NRTAKAEFGHAQLRV 118 (527)
T ss_dssp -CCCSTTT-SSSCEEEETHHHHHHHHH--SSSCB---C-----CEEEEEEEE
T ss_pred hhHHHHHh-cCCCEEEEChHHHHHHHH--cCCeE---EeCCCccccceEEEE
Confidence 11234456 499999999999999986 56653 222233444444554
No 110
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=98.45 E-value=3.5e-07 Score=101.20 Aligned_cols=92 Identities=8% Similarity=-0.094 Sum_probs=69.9
Q ss_pred CcCceEEEEEe----cCCcEEEEEEecCCCccc----ccCH-HHHHHHHHHHHHhhccccCCcccccceecccccccccc
Q psy5570 116 PLADVAVVALV----HNDLRGAATSIGEQPIKG----LVDP-KRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHY 186 (875)
Q Consensus 116 p~sDaaV~~~~----~~~~~g~ams~G~~p~~~----~~dP-y~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~ 186 (875)
++.|++|++++ ...+..++++++....+. ..|+ +..++.||+.++++|+|+|+.++. +.+++++.
T Consensus 42 iGddaav~~~~~~~~~~~~~~lv~stD~~~~k~~~a~~~~~~~~iG~~ava~~vsDiaamGA~P~~-~l~~l~~~----- 115 (350)
T 3m84_A 42 LGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPIT-FLDYVAHD----- 115 (350)
T ss_dssp CGGGCCEEECHHHHHHCSSEEEEEEEECCTTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTTCEEEE-EEEEEEES-----
T ss_pred CCCceEEEecCcccccCCCceEEEEcCcCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcHHH-HHHHhcCC-----
Confidence 35699999986 224678999999887765 3455 899999999999999999997665 55555541
Q ss_pred CCcccccccCcc-hhcccccccccchHHhhhhcCCcccCC
Q psy5570 187 SFSGRFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 187 ~~~~~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
.-+++ +.+. ++||.++|+++|+|+|||
T Consensus 116 -------~~~~~~l~~i-----~~Gi~~~~~~~g~~lvGG 143 (350)
T 3m84_A 116 -------KLDPAIMEEL-----VKGMSKACAECGVSLVGG 143 (350)
T ss_dssp -------SCCHHHHHHH-----HHHHHHHHHHTTCEEEEE
T ss_pred -------CCCHHHHHHH-----HHHHHHHHHHhCCeEEee
Confidence 01233 5555 899999999999999975
No 111
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=98.45 E-value=2.9e-07 Score=92.83 Aligned_cols=86 Identities=17% Similarity=0.097 Sum_probs=56.9
Q ss_pred eEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCc----c--Cc-cEEEEcCCcCccccccchhHHHHHHhh
Q psy5570 671 ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITL----D--RF-KGLVFPGGFSYADALGSAKGWAASLLL 743 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l----~--~~-d~lvlPGGfS~gD~l~~s~~~a~ail~ 743 (875)
|||+||-++++ ..+.+.++|++.|+++.++.... +...+ . +. ++|+.||.+++.|. +
T Consensus 1 ~~i~iiDn~~s-~~~~i~~~l~~~G~~~~v~~~~~---~~~~i~~~l~~~~~~~iil~gGpg~~~~~-----~------- 64 (192)
T 1i1q_B 1 ADILLLDNIDS-FTWNLADQLRTNGHNVVIYRNHI---PAQTLIDRLATMKNPVLMLSPGPGVPSEA-----G------- 64 (192)
T ss_dssp CEEEEEECSCS-SHHHHHHHHHHTTCEEEEEETTS---CSHHHHHHHTTCSSEEEEECCCSSCGGGS-----T-------
T ss_pred CcEEEEECCcc-HHHHHHHHHHHCCCeEEEEECCC---CHHHHHHHhhhccCCeEEECCCCcCchhC-----c-------
Confidence 47898855665 68999999999999998876430 00112 1 22 36666666665542 1
Q ss_pred chhHHHHHHHHHHCCCceEEEEehhHHHHHhcC
Q psy5570 744 NEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG 776 (875)
Q Consensus 744 ~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elG 776 (875)
+...+.+.++ .++|+||||.|+|+|.++-
T Consensus 65 ---~~~~l~~~~~-~~~PilGIC~G~Qll~~~~ 93 (192)
T 1i1q_B 65 ---CMPELLTRLR-GKLPIIGICLGHQAIVEAY 93 (192)
T ss_dssp ---THHHHHHHHB-TTBCEEEETHHHHHHHHHT
T ss_pred ---hHHHHHHHHh-cCCCEEEECcChHHHHHHh
Confidence 1223333455 4899999999999999864
No 112
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.44 E-value=8.1e-08 Score=98.86 Aligned_cols=92 Identities=13% Similarity=0.124 Sum_probs=70.9
Q ss_pred eEEEEEecCCCC------CHHHHHHHHHHcCCeeEEEEeecccccc----cCccCccEEEEcCCcCccccccchhHHHHH
Q psy5570 671 ISIAVLREEGIN------GDREMSAMAQVCGFEVWDITVQDLLENK----ITLDRFKGLVFPGGFSYADALGSAKGWAAS 740 (875)
Q Consensus 671 ~kVaIlv~pG~n------~~~e~~~A~~~aG~~v~~V~~~dl~~~~----~~l~~~d~lvlPGGfS~gD~l~~s~~~a~a 740 (875)
+||++| .++++ +..+..+||++.|+++..+...+ .++ ..++++|+|++|||-++ .. ..
T Consensus 28 ~~i~~I-p~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~--~~~~~~~~~l~~ad~I~l~GG~~~-~l--------~~ 95 (206)
T 3l4e_A 28 KTVTFI-PTASTVEEVTFYVEAGKKALESLGLLVEELDIAT--ESLGEITTKLRKNDFIYVTGGNTF-FL--------LQ 95 (206)
T ss_dssp CEEEEE-CGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT--SCHHHHHHHHHHSSEEEECCSCHH-HH--------HH
T ss_pred CEEEEE-CCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CChHHHHHHHHhCCEEEECCCCHH-HH--------HH
Confidence 588887 66665 34688999999999987764322 111 34789999999996553 33 45
Q ss_pred HhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 741 LLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 741 il~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.++...+.+.+++++++ |+|++|||.|+|+|++.
T Consensus 96 ~L~~~gl~~~l~~~~~~-G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 96 ELKRTGADKLILEEIAA-GKLYIGESAGAVITSPN 129 (206)
T ss_dssp HHHHHTHHHHHHHHHHT-TCEEEEETHHHHTTSSB
T ss_pred HHHHCChHHHHHHHHHc-CCeEEEECHHHHHhccc
Confidence 57888999999999985 99999999999999863
No 113
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=98.41 E-value=3.4e-07 Score=102.32 Aligned_cols=88 Identities=22% Similarity=0.317 Sum_probs=64.8
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKT 749 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~ 749 (875)
+++|+|+ +.|.. +++.++|+++|+++.++.... ...+....++|+|||+||.. |..+. ....+
T Consensus 190 ~~~V~vi-D~G~k--~ni~r~L~~~G~~v~vvp~~~-~~e~i~~~~~DGliLsGGPg--dp~~~-----------~~~~~ 252 (379)
T 1a9x_B 190 PFHVVAY-DFGAK--RNILRMLVDRGCRLTIVPAQT-SAEDVLKMNPDGIFLSNGPG--DPAPC-----------DYAIT 252 (379)
T ss_dssp CEEEEEE-ESSCC--HHHHHHHHHTTEEEEEEETTC-CHHHHHTTCCSEEEECCCSB--CSTTC-----------HHHHH
T ss_pred CCEEEEE-ECCCh--HHHHHHHHHCCCEEEEEeccC-CHHHHhhcCCCEEEEeCCCC--ChHHH-----------HHHHH
Confidence 4688887 77876 789999999999998875431 00111113699999999964 32222 34667
Q ss_pred HHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 750 QLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 750 ~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
.+++++++ ++|+||||.|+|+|..+
T Consensus 253 ~Ir~~~~~-~~PILGIClG~QLLa~A 277 (379)
T 1a9x_B 253 AIQKFLET-DIPVFGICLGHQLLALA 277 (379)
T ss_dssp HHHHHTTS-CCCEEEETHHHHHHHHH
T ss_pred HHHHHHHc-CCCEEEECchHHHHHHH
Confidence 88888875 89999999999999984
No 114
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=98.40 E-value=2.8e-07 Score=101.99 Aligned_cols=91 Identities=9% Similarity=-0.201 Sum_probs=64.2
Q ss_pred cCceEEEEEecC-CcEEEEEEecCCCcccc-----cCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcc
Q psy5570 117 LADVAVVALVHN-DLRGAATSIGEQPIKGL-----VDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSG 190 (875)
Q Consensus 117 ~sDaaV~~~~~~-~~~g~ams~G~~p~~~~-----~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~ 190 (875)
+.|++|++++.. .+..++++++.-..+.. .+|+..++.||++++++|+|+|+.++. +.+++++.
T Consensus 47 Gddaav~~~~~~~~~~~lv~~tD~~g~~~~~a~~~~~~~~iG~~aVa~~vsDiaamGA~P~~-~l~~l~~~--------- 116 (349)
T 3p4e_A 47 GGFGALCELPTKYKHPVLVSGTDGVGTKLRLALDMKKHDTIGIDLVAMCVNDLIVQGAEPLF-FLDYYATG--------- 116 (349)
T ss_dssp ----CEECCCTTCSSEEEEEEEECCTHHHHHHHHTTCCSSHHHHHHHHHHHHHHTTTCEEEE-EEEEEEES---------
T ss_pred CCCeEEEEccccCCCceEEEEcCCCCcchhHHHhcCCHHHHHHHHHHHHHHHHHHcCCcHHH-HHHhhcCC---------
Confidence 459999987621 14678899988765443 345699999999999999999997665 55555542
Q ss_pred cccccCcc-hhcccccccccchHHhhhhcCCcccCC
Q psy5570 191 RFAFKNHG-IYDHLDRSQCLPIRYVDDNNKITEDYP 225 (875)
Q Consensus 191 ~w~~g~P~-l~~a~~a~~~~~l~d~~~~lgiP~i~g 225 (875)
.-.++ +.+. ++||.++|+++|+|+|||
T Consensus 117 ---~~~~~~l~~i-----~~Gi~~~~~~~g~~lvGG 144 (349)
T 3p4e_A 117 ---KLDVDTAAEV-----ISGIADGCLQAGCALIGG 144 (349)
T ss_dssp ---SCCHHHHHHH-----HHHHHHHHHHHTCEEEEE
T ss_pred ---CCCHHHHHHH-----HHHHHHHHHHcCCEEEcc
Confidence 01233 5555 899999999999999975
No 115
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=98.32 E-value=1.3e-06 Score=103.87 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=68.7
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
..++|+|+ +.|....+.+.++|++.|++++++...+ +..+.++|+|||+||.......+ .-|+. .++
T Consensus 445 ~Gk~Ilvi-D~gdsf~~~l~~~l~~~G~~v~Vv~~d~----~~~~~~~DgIIlsGGPg~p~d~~--~p~i~------~~~ 511 (645)
T 3r75_A 445 SGCRALIV-DAEDHFTAMIAQQLSSLGLATEVCGVHD----AVDLARYDVVVMGPGPGDPSDAG--DPRIA------RLY 511 (645)
T ss_dssp TTCEEEEE-ESSCTHHHHHHHHHHHTTCEEEEEETTC----CCCGGGCSEEEECCCSSCTTCTT--SHHHH------HHH
T ss_pred CCCEEEEE-ECCccHHHHHHHHHHHCCCEEEEEECCC----cccccCCCEEEECCCCCChhhhh--hhhHH------HHH
Confidence 34678876 8888778999999999999998876542 23467899999988864322221 12332 345
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
+.+++.+++ ++|+||||.|+|+|..+
T Consensus 512 ~lI~~a~~~-~iPiLGIClG~QlLa~a 537 (645)
T 3r75_A 512 AWLRHLIDE-GKPFMAVCLSHQILNAI 537 (645)
T ss_dssp HHHHHHHHH-TCCEEEETHHHHHHHHH
T ss_pred HHHHHHHHC-CCCEEEECHHHHHHHHH
Confidence 677777774 89999999999999874
No 116
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=98.26 E-value=9.1e-07 Score=97.16 Aligned_cols=89 Identities=9% Similarity=-0.007 Sum_probs=60.3
Q ss_pred HhhhhcccCC-ChHHHHhcCCcccccCCCCCCCceEEEeCCcchh-HHHHhhhhccccchhhhhhhhcchhh--hhhccc
Q psy5570 450 FFQCAESFYD-RMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKV-ALQEVNQKLGQIGLLFIYFIVQRTKL--CIVQRH 525 (875)
Q Consensus 450 ~i~s~hdvsD-GL~~al~eMa~~~~~~G~~~~~~~~Idl~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~--~~LFsE 525 (875)
.+.|+||++| ||+.++.||+ ++++|++ ||+...+.. ....+.. .-+.++. ..+|++
T Consensus 214 ~v~a~~DiS~GGL~~~L~ema--~s~vg~~------I~~~~iP~~~~~~~~~~------------~~~~~~~~~~~~~~~ 273 (334)
T 2v9y_A 214 HVKAFAHITGGGLLENIPRVL--PEKLGVD------LDAQTWRIPRVFSWLQQ------------EGHLSEEEMARTFNC 273 (334)
T ss_dssp CCCEEEECCTTHHHHHSGGGS--CTTEEEE------EEGGGSCCCHHHHHHHH------------HHTCCHHHHHHHCCT
T ss_pred CceEEEeCCCCcHHHHHHHHh--hcCeEEE------EecccCCCcHHHHHHHH------------hcCCCHHHHHHHhCC
Confidence 4789999999 9999999999 6678888 876544311 0110000 0001222 237999
Q ss_pred cceee--EecCCHHHHHHHHHhhcCCCCCCCceeecccccC
Q psy5570 526 EVGLA--FDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNS 564 (875)
Q Consensus 526 ~~G~v--v~~~d~~~v~~~f~~~l~r~p~~ve~~~IGqvns 564 (875)
..|++ +.+++.+.+.+.+++ .++++..||++..
T Consensus 274 g~gll~~v~~~~~~~~~~~l~~------~g~~~~~IG~V~~ 308 (334)
T 2v9y_A 274 GVGAVLVVSKEQTEQILRGIQQ------HKEEAWVIGSVVA 308 (334)
T ss_dssp TEEEEEEECGGGHHHHHHHHHH------TTCCEEEEEEEEE
T ss_pred CCCEEEEECHHHHHHHHHHHHh------cCCCeEEEEEEec
Confidence 98876 566777778888876 5778999999865
No 117
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=98.26 E-value=4.4e-07 Score=105.53 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=60.8
Q ss_pred ceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccC--ccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 670 VISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDR--FKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~--~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
.++|+|+ +.|......++++++++|..++++.+. .+...+++ +|+||||||++. ..+... +.+
T Consensus 7 ~~~IlIl-D~g~~~~~~i~r~lr~~G~~~~i~p~~---~~~~~i~~~~~dgiILsGGp~s--~~~~~~---------~~~ 71 (525)
T 1gpm_A 7 KHRILIL-DFGSQYTQLVARRVRELGVYCELWAWD---VTEAQIRDFNPSGIILSGGPES--TTEENS---------PRA 71 (525)
T ss_dssp SSEEEEE-ECSCTTHHHHHHHHHHTTCEEEEEESC---CCHHHHHHHCCSEEEECCCSSC--TTSTTC---------CCC
T ss_pred CCEEEEE-ECCCccHHHHHHHHHHCCCEEEEEECC---CCHHHHhccCCCEEEECCcCcc--ccccCC---------cch
Confidence 3579887 777777888999999999999887653 11223443 499999999863 222210 111
Q ss_pred HHHHHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 748 KTQLNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
. +++++ .|+|+||||.|+|+|+.+
T Consensus 72 ~---~~~~~-~g~PvLGIC~G~Qlla~~ 95 (525)
T 1gpm_A 72 P---QYVFE-AGVPVFGVCYGMQTMAMQ 95 (525)
T ss_dssp C---GGGGT-SSSCEEEETHHHHHHHHH
T ss_pred H---HHHHH-CCCCEEEEChHHHHHHHH
Confidence 1 23345 489999999999999985
No 118
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=98.19 E-value=3.2e-06 Score=97.35 Aligned_cols=91 Identities=21% Similarity=0.238 Sum_probs=65.8
Q ss_pred cceEEEEEecCCCCCH--HHHHHHHHHcC----CeeEEEEee--ccccc----ccCccCccEEEEcCCcCccccccchhH
Q psy5570 669 KVISIAVLREEGINGD--REMSAMAQVCG----FEVWDITVQ--DLLEN----KITLDRFKGLVFPGGFSYADALGSAKG 736 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~--~e~~~A~~~aG----~~v~~V~~~--dl~~~----~~~l~~~d~lvlPGGfS~gD~l~~s~~ 736 (875)
...+||++=.|=.-.| .++..||+.+| .++.+.|+. ++... ...|+++|+|++||||+ |. .
T Consensus 292 ~~v~IalVGKY~~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G--~~--~--- 364 (535)
T 3nva_A 292 KTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFG--SR--G--- 364 (535)
T ss_dssp CEEEEEEEESCTTSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCS--ST--T---
T ss_pred CeeEEEEEecCcCCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCC--Cc--c---
Confidence 4578998866622223 57777887764 678888875 34332 24689999999999974 42 1
Q ss_pred HHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 737 WAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 737 ~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
| ....+.++.+.++ ++|+||||.|+|+|..
T Consensus 365 ~-------~g~i~~ir~a~~~-~~PiLGIClG~Qll~v 394 (535)
T 3nva_A 365 A-------EGKIKAIKYAREH-NIPFLGICFGFQLSIV 394 (535)
T ss_dssp H-------HHHHHHHHHHHHH-TCCEEEETHHHHHHHH
T ss_pred H-------HHHHHHHHHHHHc-CCcEEEECcchhHHHH
Confidence 1 3466788888875 8999999999999987
No 119
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=98.08 E-value=1.6e-06 Score=100.28 Aligned_cols=84 Identities=15% Similarity=0.164 Sum_probs=58.5
Q ss_pred EEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCc--cEEEEcCCcCccccccchhHHHHHHhhchhHHHH
Q psy5570 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRF--KGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~--d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~ 750 (875)
|+|| +.|+..-..++++++++|..++++... .+...++++ |+||||||++. ..+....| +.
T Consensus 2 i~il-D~g~~~~~~i~r~l~~~G~~~~i~p~~---~~~~~i~~~~~dgiIlsGGp~s--~~~~~~~~---------~~-- 64 (503)
T 2ywb_A 2 VLVL-DFGSQYTRLIARRLRELRAFSLILPGD---APLEEVLKHRPQALILSGGPRS--VFDPDAPR---------PD-- 64 (503)
T ss_dssp EEEE-ESSCTTHHHHHHHHHTTTCCEEEEETT---CCHHHHHTTCCSEEEECCCSSC--SSCTTCCC---------CC--
T ss_pred EEEE-ECCCcHHHHHHHHHHHCCCEEEEEECC---CCHHHHHhcCCCEEEECCCCch--hccCCCcc---------hH--
Confidence 5665 888887899999999999999887643 112234444 99999999863 22221011 11
Q ss_pred HHHHHHCCCceEEEEehhHHHHHhc
Q psy5570 751 LNKFIARSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 751 v~~f~~r~g~~vLGICnGfQiL~el 775 (875)
++.++ .|+|+||||.|+|+|..+
T Consensus 65 -~~~~~-~~~PvLGIC~G~Qlla~~ 87 (503)
T 2ywb_A 65 -PRLFS-SGLPLLGICYGMQLLAQE 87 (503)
T ss_dssp -GGGGC-SSCCEEEETHHHHHHHHT
T ss_pred -HHHHh-CCCCEEEECHHHHHHHHH
Confidence 22345 489999999999999985
No 120
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=97.96 E-value=7.5e-06 Score=95.38 Aligned_cols=76 Identities=18% Similarity=0.172 Sum_probs=52.3
Q ss_pred HHHHHHHHHc----CCeeEEEEeecc--ccc--ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHH
Q psy5570 685 REMSAMAQVC----GFEVWDITVQDL--LEN--KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIA 756 (875)
Q Consensus 685 ~e~~~A~~~a----G~~v~~V~~~dl--~~~--~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~ 756 (875)
.++.+||..+ |.++.++|..+- ... +..+.++|+|+||||| ||.. + ....++++.+.+
T Consensus 317 ~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGf--Gd~~-----~-------~g~i~~ir~a~e 382 (550)
T 1vco_A 317 LSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGF--GVRG-----I-------EGKVRAAQYARE 382 (550)
T ss_dssp HHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCC--SSTT-----H-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCC--CCcc-----h-------hhhHHHHHHHHH
Confidence 4555666654 568888887631 111 1236789999999995 5542 1 234567788877
Q ss_pred CCCceEEEEehhHHHHHhc
Q psy5570 757 RSDTFSFGVCNGCQLMNLL 775 (875)
Q Consensus 757 r~g~~vLGICnGfQiL~el 775 (875)
+ ++|+||||+|||+|+.+
T Consensus 383 ~-~iPiLGICLGmQlL~~a 400 (550)
T 1vco_A 383 R-KIPYLGICLGLQIAVIE 400 (550)
T ss_dssp T-TCCEEEETHHHHHHHHH
T ss_pred C-CCcEEEECcCHHHHHHH
Confidence 4 89999999999999884
No 121
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=97.87 E-value=4.7e-06 Score=99.89 Aligned_cols=95 Identities=15% Similarity=0.261 Sum_probs=59.0
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
...+|+|+-| |......++++++++|..++++.... ...+....++|+|||+||.+. ..+....| +.
T Consensus 28 ~~~~I~VLDf-g~q~~~liar~lre~Gv~~~ivp~~~-~~e~i~~~~~dGIILsGGp~s--~~~~~~~~---------~~ 94 (697)
T 2vxo_A 28 YEGAVVILDA-GAQYGKVIDRRVRELFVQSEIFPLET-PAFAIKEQGFRAIIISGGPNS--VYAEDAPW---------FD 94 (697)
T ss_dssp -CCCEEEEEE-C--CHHHHHHHHHHTTCCEEEEETTC-CHHHHHHHTCSEEEEEECC---------CCC---------CC
T ss_pred CCCEEEEEEC-CCchHHHHHHHHHHCCCEEEEEECCC-CHHHHhhcCCCEEEECCCCCc--ccCccchh---------HH
Confidence 3457998855 44546678899999999999887541 111111257899999999873 22211111 11
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhcCCCCCCc
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVST 782 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~elGlLpg~~ 782 (875)
++.++ .|+|+||||.|+|+|..+ ++|..
T Consensus 95 ---~~i~~-~g~PvLGIC~G~QlLa~~--lGG~v 122 (697)
T 2vxo_A 95 ---PAIFT-IGKPVLGICYGMQMMNKV--FGGTV 122 (697)
T ss_dssp ---GGGTT-SSCCEEEEEHHHHHHHHH--TTCCB
T ss_pred ---HHHHh-CCCCEEEECHHHHHHHHH--hCCeE
Confidence 12345 489999999999999985 55553
No 122
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=97.83 E-value=1.1e-05 Score=89.10 Aligned_cols=93 Identities=8% Similarity=-0.153 Sum_probs=72.2
Q ss_pred cCceEEEEEecCCcEEEEEEecC---CCcc-cccCHHHHHHHHHHHHHhhccccCCcccccceeccccccccccCCcccc
Q psy5570 117 LADVAVVALVHNDLRGAATSIGE---QPIK-GLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFHYSFSGRF 192 (875)
Q Consensus 117 ~sDaaV~~~~~~~~~g~ams~G~---~p~~-~~~dPy~GA~~AV~EAl~Nlva~g~~~l~~i~ls~n~~~~~~~~~~~~w 192 (875)
+.|++|++++ ...+++|++. +|.+ ..+|||.+++.||++++++|+|+|+.++. +.+++++.
T Consensus 61 GdDaAvi~~~---~~~lv~ttD~~~~~~~f~~~~~p~~iG~~ava~~vsDlaamGA~P~~-~l~~l~~p----------- 125 (342)
T 3c9u_A 61 GDDTAPVEYC---SKKLLLTTDVLNEGVHFLRSYIPEAVGWKAISVNVSDVIANGGLPKW-ALISLNLP----------- 125 (342)
T ss_dssp TSSSEEEEET---TEEEEEEEEEEEBTTTBCTTSCHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEEEC-----------
T ss_pred CCceEEEecC---CCeEEEEeCccCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCchHH-hEEEEecC-----------
Confidence 5699999973 4678898887 7766 46889999999999999999999986654 76776652
Q ss_pred cccCcchhcccccccccchHHhhhhcCCcccCCCCC
Q psy5570 193 AFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNP 228 (875)
Q Consensus 193 ~~g~P~l~~a~~a~~~~~l~d~~~~lgiP~i~gkds 228 (875)
.++..+++.+. ++||.++|+++|+|+|||.-+
T Consensus 126 --~~~~~~~l~~i--~~Gi~~~~~~~gv~lvGGdT~ 157 (342)
T 3c9u_A 126 --EDLEVSYVERF--YIGVKRACEFYKCEVVGGNIS 157 (342)
T ss_dssp --TTSBHHHHHHH--HHHHHHHHHHHTCEEEEEEEE
T ss_pred --CCCCHHHHHHH--HHHHHHHHHHcCCeEEeeEee
Confidence 12233344334 999999999999999986553
No 123
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=97.81 E-value=1.8e-05 Score=92.13 Aligned_cols=76 Identities=18% Similarity=0.238 Sum_probs=54.0
Q ss_pred HHHHHHHHHHcCC----eeEEEEeec--cccc-ccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHH
Q psy5570 684 DREMSAMAQVCGF----EVWDITVQD--LLEN-KITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIA 756 (875)
Q Consensus 684 ~~e~~~A~~~aG~----~v~~V~~~d--l~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~ 756 (875)
-.++.++|+.+|+ +|.++|..+ +... +..+.++|+|+||||+ ||... ....+.++.+++
T Consensus 305 y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGp--g~~~~------------~g~~~~i~~a~~ 370 (545)
T 1s1m_A 305 YKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGF--GYRGV------------EGMITTARFARE 370 (545)
T ss_dssp GHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCC--SSTTH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCC--CCccc------------hhhHHHHHHHHH
Confidence 4667888888876 456666652 2111 1347789999999996 45321 234577888887
Q ss_pred CCCceEEEEehhHHHHHh
Q psy5570 757 RSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 757 r~g~~vLGICnGfQiL~e 774 (875)
+ ++|+||||+|+|+|+.
T Consensus 371 ~-~~PiLGIClG~Qll~v 387 (545)
T 1s1m_A 371 N-NIPYLGICLGMQVALI 387 (545)
T ss_dssp T-TCCEEEETHHHHHHHH
T ss_pred C-CCcEEEECChHHHHHH
Confidence 4 8999999999999996
No 124
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=95.47 E-value=0.032 Score=60.82 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=54.9
Q ss_pred ccceEEEEEecCCCCCHHHH----HHHHHHcCCeeEEEEee--ccc---------------ccccCccCccEEEEcCCcC
Q psy5570 668 KKVISIAVLREEGINGDREM----SAMAQVCGFEVWDITVQ--DLL---------------ENKITLDRFKGLVFPGGFS 726 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~~e~----~~A~~~aG~~v~~V~~~--dl~---------------~~~~~l~~~d~lvlPGGfS 726 (875)
...+||+||-. .....++ ...|.+.+-++++..+. +-. -.+.+.++||++|+-|+-.
T Consensus 45 irplkI~ILnl--mp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGsP~ 122 (312)
T 2h2w_A 45 IRPLEILILNL--MPDKIKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITGAPV 122 (312)
T ss_dssp CCCEEEEEECC--CSSHHHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECCCSC
T ss_pred CCCceEEEEeC--CCCcCchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECCCCC
Confidence 46689999954 3333444 44455556555554332 111 1122357899999999974
Q ss_pred ccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 727 YADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 727 ~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
--..... --|. ..+.+.++...+ .++|+||||.|-|+++.
T Consensus 123 ~~~~~ed-~~yw------~el~~li~~~~~-~~~p~LGIC~GaQ~~l~ 162 (312)
T 2h2w_A 123 ELLPFEE-VDYW------EELTEIMEWSRH-NVYSTMFICWAAQAGLY 162 (312)
T ss_dssp TTSCGGG-STTH------HHHHHHHHHHHH-HEEEEEEETHHHHHHHH
T ss_pred CCCCCcc-CchH------HHHHHHHHHHHH-cCCcEEEECHHHHHHHH
Confidence 2111111 0122 234455554445 48999999999999544
No 125
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=95.25 E-value=0.034 Score=60.23 Aligned_cols=98 Identities=17% Similarity=0.186 Sum_probs=53.8
Q ss_pred cccceEEEEEecCCCCCHHHHHHHHH----HcCCeeEEEEee--ccc---------------ccccCccCccEEEEcCCc
Q psy5570 667 GKKVISIAVLREEGINGDREMSAMAQ----VCGFEVWDITVQ--DLL---------------ENKITLDRFKGLVFPGGF 725 (875)
Q Consensus 667 ~~~~~kVaIlv~pG~n~~~e~~~A~~----~aG~~v~~V~~~--dl~---------------~~~~~l~~~d~lvlPGGf 725 (875)
....+||+||-. .....++..-|. +.+-++++..+. +-. -.+.+.++||++|+-|+-
T Consensus 32 ~irplkI~ILnl--mp~k~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITGap 109 (301)
T 2vdj_A 32 DIRALKIAILNL--MPTKQETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITGAP 109 (301)
T ss_dssp TSCCEEEEEECC--CSSHHHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECCCT
T ss_pred CCCCceEEEEeC--CCCcCchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECCCC
Confidence 346789999954 333344433333 334445443332 101 001135789999999997
Q ss_pred CccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHh
Q psy5570 726 SYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNL 774 (875)
Q Consensus 726 S~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~e 774 (875)
.--..... --|. ..+.+.++...+ .++|+||||.|-|+++.
T Consensus 110 ~~~~~~ed-~~yw------~el~~li~~~~~-~~~~~lgIC~GaQ~~l~ 150 (301)
T 2vdj_A 110 VETLSFEE-VDYW------EELKRIMEYSKT-NVTSTLHICWGAQAGLY 150 (301)
T ss_dssp TTTSCGGG-STTH------HHHHHHHHHHHH-HEEEEEEETHHHHHHHH
T ss_pred CcCCCccc-CchH------HHHHHHHHHHHH-cCCcEEEEcHHHHHHHH
Confidence 42111111 0121 234455554445 48999999999999544
No 126
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=93.63 E-value=0.088 Score=56.76 Aligned_cols=102 Identities=12% Similarity=0.188 Sum_probs=70.6
Q ss_pred ccceEEEEEecCCCCCH----HHHHHHHHHcCC-eeEEEEeeccc--cc---ccCccCccEEEEcCCcCccccccchhHH
Q psy5570 668 KKVISIAVLREEGINGD----REMSAMAQVCGF-EVWDITVQDLL--EN---KITLDRFKGLVFPGGFSYADALGSAKGW 737 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~----~e~~~A~~~aG~-~v~~V~~~dl~--~~---~~~l~~~d~lvlPGGfS~gD~l~~s~~~ 737 (875)
+.+++|++|-.-.. .. .....+|++.|+ ++..+...+.. .+ ...+.++|+|+++||=.+ +
T Consensus 54 g~~~~I~~IptAs~-~~~~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt~----~----- 123 (291)
T 3en0_A 54 GNDAIIGIIPSASR-EPLLIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQL----R----- 123 (291)
T ss_dssp GGGCEEEEECTTCS-SHHHHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCHH----H-----
T ss_pred CCCCeEEEEeCCCC-ChHHHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCHH----H-----
Confidence 34578998844333 22 234668999999 66666553221 11 124789999999997542 2
Q ss_pred HHHHhhchhHHHHHHHHHHCCC-ceEEEEehhHHHHHhcCCCCC
Q psy5570 738 AASLLLNEGIKTQLNKFIARSD-TFSFGVCNGCQLMNLLGWFSV 780 (875)
Q Consensus 738 a~ail~~~~i~~~v~~f~~r~g-~~vLGICnGfQiL~elGlLpg 780 (875)
+...++..++.+.|++.+++ | ++++|.|-|.-++.+.-+..|
T Consensus 124 l~~~l~~t~l~~~L~~~~~~-G~~~~~GtSAGA~i~~~~m~~~g 166 (291)
T 3en0_A 124 LCGLLADTPLMDRIRQRVHN-GEISLAGTSAGAAVMGHHMIAGG 166 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-TSSEEEEETHHHHTTSSEEEEEE
T ss_pred HHHHHHhCCHHHHHHHHHHC-CCeEEEEeCHHHHhhhHheEcCC
Confidence 24556788999999999985 8 899999999999876544433
No 127
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=84.60 E-value=1.9 Score=45.69 Aligned_cols=78 Identities=8% Similarity=-0.021 Sum_probs=55.5
Q ss_pred eEEEEEecCCC---CCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 671 ISIAVLREEGI---NGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 671 ~kVaIlv~pG~---n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
+||.|+ .|. ++-..+..+|+..|++|..+...++..+..+|++||.||++-..+ +.+ .+..
T Consensus 5 ~~vLiV--~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~~yDvIIl~d~~~--~~l------------~~~~ 68 (259)
T 3rht_A 5 TRVLYC--GDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLAKQDLVILSDYPA--ERM------------TAQA 68 (259)
T ss_dssp -CEEEE--ESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHHTCSEEEEESCCG--GGB------------CHHH
T ss_pred ceEEEE--CCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHhcCCEEEEcCCcc--ccC------------CHHH
Confidence 357766 354 334556789999999999988777766666799999999974221 112 4567
Q ss_pred HHHHHHHHHCCCceEEEE
Q psy5570 748 KTQLNKFIARSDTFSFGV 765 (875)
Q Consensus 748 ~~~v~~f~~r~g~~vLGI 765 (875)
.+.|++|+++ |+=++.+
T Consensus 69 ~~~L~~yV~~-GGgLi~~ 85 (259)
T 3rht_A 69 IDQLVTMVKA-GCGLVML 85 (259)
T ss_dssp HHHHHHHHHT-TCEEEEE
T ss_pred HHHHHHHHHh-CCeEEEe
Confidence 8899999985 7766665
No 128
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=84.58 E-value=1.2 Score=52.85 Aligned_cols=67 Identities=15% Similarity=0.135 Sum_probs=55.0
Q ss_pred HHHHHHHcCCeeEEEEeecccccccCccCccEEEEcC----CcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceE
Q psy5570 687 MSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPG----GFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFS 762 (875)
Q Consensus 687 ~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPG----GfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~v 762 (875)
+..||..++++|+.++..|+... ..|+++|.||.+| -+|.||.- .++...++|++|..+ |+=+
T Consensus 473 ilEALsg~~~dV~FIsfdDI~e~-e~L~d~DVIIn~G~A~TalSgg~~W-----------~~p~~~~aLR~fV~~-GGgL 539 (759)
T 2zuv_A 473 ILESLSGMRVNVRFISFDDVLAH-GIDSDIDVIINGGPVDTAFTGGDVW-----------TNPKLVETVRAWVRG-GGAF 539 (759)
T ss_dssp HHHHHHTSSSEEEEEEHHHHHHH-CCCTTCCEEEEEECTTSTTTCGGGG-----------GCHHHHHHHHHHHHT-TCEE
T ss_pred HHHHHhcCCCceEEecHHHhccc-cccccCCEEEecCcchhcccCcccc-----------CCHHHHHHHHHHHHc-CCcE
Confidence 78899999999999998887664 3489999999999 35544443 248899999999995 8888
Q ss_pred EEEe
Q psy5570 763 FGVC 766 (875)
Q Consensus 763 LGIC 766 (875)
+||+
T Consensus 540 IgVG 543 (759)
T 2zuv_A 540 VGVG 543 (759)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 8887
No 129
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=83.83 E-value=4 Score=43.53 Aligned_cols=80 Identities=13% Similarity=0.163 Sum_probs=52.5
Q ss_pred cceEEEEEecCCCCCHH------HHHHHHHHcC-CeeEEEEee------cccccccCccCccEEEEcCCcCccccccchh
Q psy5570 669 KVISIAVLREEGINGDR------EMSAMAQVCG-FEVWDITVQ------DLLENKITLDRFKGLVFPGGFSYADALGSAK 735 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~------e~~~A~~~aG-~~v~~V~~~------dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~ 735 (875)
++.||.|+ -|.++.. .+...|++.| |+|...... ++. ...|++||+||+-- .++.+
T Consensus 3 ~~~kvLiv--~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f--~~~L~~~D~vV~~~---~~~~l---- 71 (281)
T 4e5v_A 3 KPIKTLLI--TGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF--VLDFSPYQLVVLDY---NGDSW---- 71 (281)
T ss_dssp CCEEEEEE--ESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC--CCCCTTCSEEEECC---CSSCC----
T ss_pred CceEEEEE--cCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH--hhhhhcCCEEEEeC---CCCcC----
Confidence 34577776 5655552 3355666677 998876431 111 13699999999633 23433
Q ss_pred HHHHHHhhchhHHHHHHHHHHCCCceEEEEehh
Q psy5570 736 GWAASLLLNEGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 736 ~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
.+..++.|.+++++ |+.++||..+
T Consensus 72 --------~~~~~~~l~~yV~~-Ggglv~~H~a 95 (281)
T 4e5v_A 72 --------PEETNRRFLEYVQN-GGGVVIYHAA 95 (281)
T ss_dssp --------CHHHHHHHHHHHHT-TCEEEEEGGG
T ss_pred --------CHHHHHHHHHHHHc-CCCEEEEecc
Confidence 35678899999985 9999998754
No 130
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=77.66 E-value=2.7 Score=43.95 Aligned_cols=78 Identities=8% Similarity=0.069 Sum_probs=48.7
Q ss_pred HHHHHHHHHHcCCeeEEEEee----cccccccCccCccEEEEcCCcCcccccc-chhHHHHHHhhchhHHHHHHHHHHCC
Q psy5570 684 DREMSAMAQVCGFEVWDITVQ----DLLENKITLDRFKGLVFPGGFSYADALG-SAKGWAASLLLNEGIKTQLNKFIARS 758 (875)
Q Consensus 684 ~~e~~~A~~~aG~~v~~V~~~----dl~~~~~~l~~~d~lvlPGGfS~gD~l~-~s~~~a~ail~~~~i~~~v~~f~~r~ 758 (875)
...+..||+..|++++.+... ++......|++||.|||.+... ..+. .+.-|... ...+...+.|++|.++
T Consensus 42 ~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~--~~l~~~~~~~~~~-~~~~~~~~~l~~~V~~- 117 (256)
T 2gk3_A 42 ATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGS--NTFLLQNETFYQL-KIKPNALESIKEYVKN- 117 (256)
T ss_dssp CHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCH--HHHHSCHHHHTTC-CCCCCHHHHHHHHHHT-
T ss_pred HHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCch--hhccccccccccc-ccChHHHHHHHHHHHh-
Confidence 456788999999999887432 1211224588999999998542 1111 00111000 0015678999999995
Q ss_pred CceEEEE
Q psy5570 759 DTFSFGV 765 (875)
Q Consensus 759 g~~vLGI 765 (875)
|+-+++|
T Consensus 118 GGgll~i 124 (256)
T 2gk3_A 118 GGGLLMI 124 (256)
T ss_dssp TCEEEEE
T ss_pred CCEEEEE
Confidence 9999998
No 131
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=77.46 E-value=3.9 Score=42.85 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=48.1
Q ss_pred HHHHHHcCCeeEEEEeecccc--cccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEE
Q psy5570 688 SAMAQVCGFEVWDITVQDLLE--NKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGV 765 (875)
Q Consensus 688 ~~A~~~aG~~v~~V~~~dl~~--~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGI 765 (875)
+.+|+..||+|..+++.|... ++..|++||.||+-|-.+ ++.+ ++...++|++|+++ |+.++||
T Consensus 38 ~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~-~~~l------------~~~~~~al~~~V~~-GgG~vgi 103 (252)
T 1t0b_A 38 ASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIA-HDEV------------KDEVVERVHRRVLE-GMGLIVL 103 (252)
T ss_dssp HHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSC-GGGS------------CHHHHHHHHHHHHT-TCEEEEE
T ss_pred HHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCC-CCcC------------CHHHHHHHHHHHHc-CCCEEEE
Confidence 667888999998877554432 234589999999854332 3333 45778899999995 9999998
Q ss_pred ehh
Q psy5570 766 CNG 768 (875)
Q Consensus 766 CnG 768 (875)
=.|
T Consensus 104 H~a 106 (252)
T 1t0b_A 104 HSG 106 (252)
T ss_dssp GGG
T ss_pred ccc
Confidence 544
No 132
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=73.03 E-value=7.3 Score=39.09 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=39.5
Q ss_pred cceEEEEEec-----CCCCCH---HHHHHHHHHcCCeeEEEEee-c----cccc-ccCc-cCccEEEEcCCcCcccc
Q psy5570 669 KVISIAVLRE-----EGINGD---REMSAMAQVCGFEVWDITVQ-D----LLEN-KITL-DRFKGLVFPGGFSYADA 730 (875)
Q Consensus 669 ~~~kVaIlv~-----pG~n~~---~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l-~~~d~lvlPGGfS~gD~ 730 (875)
++|||+||.. +|. -| .-+...+++.|+++....+- | +... ...+ +++|.||..||.|.|+.
T Consensus 29 ~~~rvaIistGdEl~~G~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g~~ 104 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGD-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVTPR 104 (185)
T ss_dssp CCEEEEEEEECHHHHTTC-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSSTT
T ss_pred CCCEEEEEEECcccCCCC-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCCCc
Confidence 6789999853 343 22 34467888899998866542 1 1111 1123 57999999999998654
No 133
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=72.74 E-value=12 Score=36.96 Aligned_cols=62 Identities=16% Similarity=0.228 Sum_probs=38.7
Q ss_pred cceEEEEEec---------C-CCCCH---HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccC--ccEEEEcCCcCc
Q psy5570 669 KVISIAVLRE---------E-GINGD---REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDR--FKGLVFPGGFSY 727 (875)
Q Consensus 669 ~~~kVaIlv~---------p-G~n~~---~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~--~d~lvlPGGfS~ 727 (875)
+++||+|+.- + |.--| .-+...|++.|+++....+- | +... ...+++ +|.||..||.|.
T Consensus 14 ~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~ 93 (178)
T 2pjk_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 5689998852 1 33222 33467888899998766442 1 1111 112344 999999999998
Q ss_pred ccc
Q psy5570 728 ADA 730 (875)
Q Consensus 728 gD~ 730 (875)
|+.
T Consensus 94 g~~ 96 (178)
T 2pjk_A 94 SPT 96 (178)
T ss_dssp STT
T ss_pred CCC
Confidence 753
No 134
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=57.77 E-value=11 Score=40.14 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=50.8
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIK 748 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~ 748 (875)
.+|||+|+.-++.. -.++...|++.|+++.... .....++++|.+|.-||= |.+ .
T Consensus 28 ~~mki~iv~~~~~~-~~~l~~~L~~~g~~v~~~~-----~~~~~~~~~DlvIvlGGD-------------GT~------L 82 (278)
T 1z0s_A 28 GGMRAAVVYKTDGH-VKRIEEALKRLEVEVELFN-----QPSEELENFDFIVSVGGD-------------GTI------L 82 (278)
T ss_dssp --CEEEEEESSSTT-HHHHHHHHHHTTCEEEEES-----SCCGGGGGSSEEEEEECH-------------HHH------H
T ss_pred cceEEEEEeCCcHH-HHHHHHHHHHCCCEEEEcc-----ccccccCCCCEEEEECCC-------------HHH------H
Confidence 46899998776666 6677888999999886521 112345688999988862 122 2
Q ss_pred HHHHHHHHCCCceEEEEehhHHHHHhcCCC
Q psy5570 749 TQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778 (875)
Q Consensus 749 ~~v~~f~~r~g~~vLGICnGfQiL~elGlL 778 (875)
.+.+.+.. . .|++||=.| .+|.|
T Consensus 83 ~aa~~~~~-~-~PilGIN~G-----~lGFL 105 (278)
T 1z0s_A 83 RILQKLKR-C-PPIFGINTG-----RVGLL 105 (278)
T ss_dssp HHHTTCSS-C-CCEEEEECS-----SSCTT
T ss_pred HHHHHhCC-C-CcEEEECCC-----CCccc
Confidence 23344433 3 999999866 56666
No 135
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=49.76 E-value=11 Score=39.53 Aligned_cols=80 Identities=8% Similarity=-0.013 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCCeeEEEEeeccc----ccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCC
Q psy5570 684 DREMSAMAQVCGFEVWDITVQDLL----ENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSD 759 (875)
Q Consensus 684 ~~e~~~A~~~aG~~v~~V~~~dl~----~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g 759 (875)
...+..||+..|++|+.+...|.. .+...|++||.||+....+ ..-+-++.-|...-+ .+.-.+.|++|+++ |
T Consensus 35 ~~~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~-~~~l~~~~~~~~~~~-~~~~~~~l~~~V~~-G 111 (248)
T 3soz_A 35 ADYLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGS-NTFLLQNRTFYNMDI-IPDALQLIADYVAE-G 111 (248)
T ss_dssp SHHHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCH-HHHHSCHHHHTTCCC-CCCHHHHHHHHHHT-T
T ss_pred HHHHHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCc-chhccCccccccccC-CHHHHHHHHHHHHh-C
Confidence 345788999999999988765433 2345689999999984433 122122222211110 12338899999996 7
Q ss_pred ceEEEEe
Q psy5570 760 TFSFGVC 766 (875)
Q Consensus 760 ~~vLGIC 766 (875)
+=+++|.
T Consensus 112 GgLi~~g 118 (248)
T 3soz_A 112 GGLLMIG 118 (248)
T ss_dssp CEEEEEC
T ss_pred CEEEEEc
Confidence 7666653
No 136
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=48.89 E-value=23 Score=34.53 Aligned_cols=62 Identities=16% Similarity=0.314 Sum_probs=38.8
Q ss_pred cceEEEEEec----------CCCCCHH---HHHHHHHHcCCeeEEEEee-c----ccc---cccCccCccEEEEcCCcCc
Q psy5570 669 KVISIAVLRE----------EGINGDR---EMSAMAQVCGFEVWDITVQ-D----LLE---NKITLDRFKGLVFPGGFSY 727 (875)
Q Consensus 669 ~~~kVaIlv~----------pG~n~~~---e~~~A~~~aG~~v~~V~~~-d----l~~---~~~~l~~~d~lvlPGGfS~ 727 (875)
+++||+||+- +|.--|. -+...|++.|++|....+- | +.. .....+++|.|+..||-|.
T Consensus 14 ~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~ 93 (178)
T 3iwt_A 14 KSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGY 93 (178)
T ss_dssp CCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSS
T ss_pred CCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCccc
Confidence 5679999852 2222221 2477889999999766542 2 111 1122457899999999998
Q ss_pred ccc
Q psy5570 728 ADA 730 (875)
Q Consensus 728 gD~ 730 (875)
++.
T Consensus 94 ~~~ 96 (178)
T 3iwt_A 94 SPT 96 (178)
T ss_dssp STT
T ss_pred CCC
Confidence 653
No 137
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=45.85 E-value=48 Score=30.56 Aligned_cols=55 Identities=11% Similarity=0.202 Sum_probs=36.3
Q ss_pred eEEEEEecCCCCCHHHHHHHHH----HcCCeeEEEEeecccccccCcc-CccEEEEcCCcCcc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQ----VCGFEVWDITVQDLLENKITLD-RFKGLVFPGGFSYA 728 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~----~aG~~v~~V~~~dl~~~~~~l~-~~d~lvlPGGfS~g 728 (875)
|||.|+.+-.+++-..++.++. ..|+++.++.+.+.. ..++. ++|.|||.-- .|+
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~--~~~l~~~~d~ii~g~p-ty~ 61 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADAS--AENLADGYDAVLFGCS-AWG 61 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBC--CTTTTTTCSEEEEEEC-EEC
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCC--HhHhcccCCEEEEEec-ccC
Confidence 4788887777777777766554 458888877655332 33577 8998877543 344
No 138
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=44.75 E-value=32 Score=40.99 Aligned_cols=62 Identities=18% Similarity=0.289 Sum_probs=47.3
Q ss_pred HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEE
Q psy5570 685 REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFG 764 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLG 764 (875)
...+.||.+.|..+.+|... .+|++|+.||+|.-... .+...+.|++|+++-|+++++
T Consensus 428 ~~~y~aL~~~gi~vD~v~~~------~dL~~Yklvv~P~~~~~----------------~~~~~~~L~~yV~~GG~lv~t 485 (675)
T 3tty_A 428 HKYYDALYKQNIQTDMISVE------EDLSKYKVVIAPVMYMV----------------KPGFAERVERFVAQGGTFVTT 485 (675)
T ss_dssp HHHHHHHHTTTCCEEEECTT------SCCTTCSEEEETTCCBC----------------CTTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHcCceEEEecCc------CCcccCCEEEEeccEec----------------CHHHHHHHHHHHhcCCEEEEE
Confidence 45688999999999887643 46899999999987654 356677889999975667776
Q ss_pred Eehh
Q psy5570 765 VCNG 768 (875)
Q Consensus 765 ICnG 768 (875)
-+-|
T Consensus 486 ~~sG 489 (675)
T 3tty_A 486 FFSG 489 (675)
T ss_dssp TTCS
T ss_pred ccCC
Confidence 4444
No 139
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=44.26 E-value=54 Score=30.11 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=33.7
Q ss_pred eEEEEEecCCCCCHHHHHHHH----HHcCCeeEEEEeecccccccCccC-ccEEEEc
Q psy5570 671 ISIAVLREEGINGDREMSAMA----QVCGFEVWDITVQDLLENKITLDR-FKGLVFP 722 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~----~~aG~~v~~V~~~dl~~~~~~l~~-~d~lvlP 722 (875)
|||.|+.+-.+++-..++.++ +..|++++.+.+.+.. ..++.+ +|.|||.
T Consensus 1 mki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~--~~~l~~~~d~ii~~ 55 (147)
T 1f4p_A 1 PKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVE--AGGLFEGFDLVLLG 55 (147)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCC--STTTTTTCSEEEEE
T ss_pred CeEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCC--HHHhcCcCCEEEEE
Confidence 578888776677666665554 4458888877655432 335778 9988885
No 140
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=40.02 E-value=36 Score=33.06 Aligned_cols=60 Identities=15% Similarity=0.107 Sum_probs=36.4
Q ss_pred ceEEEEEecCCCCCHHHHHHHH----HH-cCCeeEEEEeecccccccCccCccEEEEcCCcCccccc
Q psy5570 670 VISIAVLREEGINGDREMSAMA----QV-CGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADAL 731 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~----~~-aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l 731 (875)
.|||.|+.+-.+++-..++.++ ++ .|.+++.+...+.. ...+.++|+|||.--.-++...
T Consensus 4 M~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~--~~~l~~aD~ii~gsP~y~g~~~ 68 (188)
T 2ark_A 4 MGKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEAT--KEDVLWADGLAVGSPTNMGLVS 68 (188)
T ss_dssp CEEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCC--HHHHHHCSEEEEEEECBTTBCC
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCC--HHHHHhCCEEEEEeCccCCcCC
Confidence 3588888666556555555544 44 67777776554322 2357789999986544344443
No 141
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=39.62 E-value=28 Score=33.20 Aligned_cols=54 Identities=11% Similarity=0.100 Sum_probs=34.0
Q ss_pred eEEEEEecCCCCCHHHHHHHH----HHcCCeeEEEEeecccccc--cCccCccEEEEcCC
Q psy5570 671 ISIAVLREEGINGDREMSAMA----QVCGFEVWDITVQDLLENK--ITLDRFKGLVFPGG 724 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~----~~aG~~v~~V~~~dl~~~~--~~l~~~d~lvlPGG 724 (875)
|||.|+-+-.+++-..++.++ +..|.++.++...+....+ .++.++|+|||.--
T Consensus 1 Mkv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gsp 60 (161)
T 3hly_A 1 MSVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTP 60 (161)
T ss_dssp -CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECC
T ss_pred CEEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcC
Confidence 678888888888887776654 4458888776554211111 12457898887543
No 142
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=38.47 E-value=29 Score=33.67 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=36.4
Q ss_pred cceEEEEEec-----CCCCCH---HHHHHHHHHc-----CCeeEEEEee-c----cccc-ccCc--cCccEEEEcCCcCc
Q psy5570 669 KVISIAVLRE-----EGINGD---REMSAMAQVC-----GFEVWDITVQ-D----LLEN-KITL--DRFKGLVFPGGFSY 727 (875)
Q Consensus 669 ~~~kVaIlv~-----pG~n~~---~e~~~A~~~a-----G~~v~~V~~~-d----l~~~-~~~l--~~~d~lvlPGGfS~ 727 (875)
.+|||+|+.- +|..-+ .-+...++.. |+++....+- | +... ...+ +++|.||..||.|.
T Consensus 4 ~~~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 83 (167)
T 1uuy_A 4 PEYKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGF 83 (167)
T ss_dssp CSEEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CCcEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 4679998852 232211 2335677777 9988765442 1 1111 1112 37999999999998
Q ss_pred cc
Q psy5570 728 AD 729 (875)
Q Consensus 728 gD 729 (875)
|+
T Consensus 84 g~ 85 (167)
T 1uuy_A 84 TP 85 (167)
T ss_dssp ST
T ss_pred CC
Confidence 74
No 143
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=37.69 E-value=28 Score=34.42 Aligned_cols=87 Identities=17% Similarity=0.181 Sum_probs=48.3
Q ss_pred ceEEEEEec-----CCCCCH---HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccccccchh
Q psy5570 670 VISIAVLRE-----EGINGD---REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYADALGSAK 735 (875)
Q Consensus 670 ~~kVaIlv~-----pG~n~~---~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD~l~~s~ 735 (875)
+|||+||.- .|.--+ .-++..|++.|+++..+.+- | +... ...++++|.||..||-|.++.=-...
T Consensus 3 ~~~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D~T~e 82 (172)
T 3kbq_A 3 AKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVE 82 (172)
T ss_dssp -CEEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTCCHHH
T ss_pred CCEEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCcccchHH
Confidence 478888742 122111 34477888899998876542 1 1111 11235699999999998754311111
Q ss_pred HHHH----HHhhchhHHHHHHHHHH
Q psy5570 736 GWAA----SLLLNEGIKTQLNKFIA 756 (875)
Q Consensus 736 ~~a~----ail~~~~i~~~v~~f~~ 756 (875)
..+. .+..++.+.+.+++++.
T Consensus 83 a~a~~~~~~l~~~~e~~~~i~~~~~ 107 (172)
T 3kbq_A 83 GFAKCIGQDLRIDEDALAMIKKKYG 107 (172)
T ss_dssp HHHHHHTCCCEECHHHHHHHHHHHC
T ss_pred HHHHHcCCCeeeCHHHHHHHHHHHc
Confidence 1111 23346667777777763
No 144
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=37.41 E-value=57 Score=31.12 Aligned_cols=55 Identities=16% Similarity=0.087 Sum_probs=35.9
Q ss_pred ceEEEEEecCCCCCHHHHHHHH----HHcCCeeEEEEeecc-ccc--ccCccCccEEEEcCC
Q psy5570 670 VISIAVLREEGINGDREMSAMA----QVCGFEVWDITVQDL-LEN--KITLDRFKGLVFPGG 724 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~----~~aG~~v~~V~~~dl-~~~--~~~l~~~d~lvlPGG 724 (875)
..||.|+-+-.+++-..++.++ ++.|.++.++...+. ..+ ..++.++|+|||.--
T Consensus 4 ~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gsp 65 (159)
T 3fni_A 4 ETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMS 65 (159)
T ss_dssp CCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECC
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcC
Confidence 4589988888888887776654 456888877665432 111 123567998888543
No 145
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=36.55 E-value=34 Score=33.20 Aligned_cols=54 Identities=19% Similarity=0.029 Sum_probs=33.4
Q ss_pred ceEEEEEecCCCCCHHHHHH----HHHHcCCeeEEEEeecc------------------cccccCccCccEEEEcCC
Q psy5570 670 VISIAVLREEGINGDREMSA----MAQVCGFEVWDITVQDL------------------LENKITLDRFKGLVFPGG 724 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~----A~~~aG~~v~~V~~~dl------------------~~~~~~l~~~d~lvlPGG 724 (875)
.|||.|+.+- .++-..++. .+++.|.+++.+...+. ......+.++|+|||---
T Consensus 4 mmkilii~~S-~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP 79 (199)
T 2zki_A 4 KPNILVLFYG-YGSIVELAKEIGKGAEEAGAEVKIRRVRETLPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSP 79 (199)
T ss_dssp CCEEEEEECC-SSHHHHHHHHHHHHHHHHSCEEEEEECCCCSCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEE
T ss_pred CcEEEEEEeC-ccHHHHHHHHHHHHHHhCCCEEEEEehhHhCChhhhhccCCCcccccccccHHHHHhCCEEEEECC
Confidence 4688887666 444444444 44456999988877654 001234678999988543
No 146
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=35.99 E-value=17 Score=40.68 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=24.4
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
.-+...+++.|+++....+- | +... ...++++|.||..||.|.|+
T Consensus 214 ~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s~g~ 264 (396)
T 1wu2_A 214 IMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSAFGD 264 (396)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC-------
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCCCCh
Confidence 44577888899998876542 1 1111 11245799999999999863
No 147
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=35.91 E-value=52 Score=31.77 Aligned_cols=59 Identities=22% Similarity=0.181 Sum_probs=34.8
Q ss_pred eEEEEEecCCCCCHHHHHH----HHHHcCCeeEEEEeecccc-----------------cccCccCccEEEEcCCcCccc
Q psy5570 671 ISIAVLREEGINGDREMSA----MAQVCGFEVWDITVQDLLE-----------------NKITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~----A~~~aG~~v~~V~~~dl~~-----------------~~~~l~~~d~lvlPGGfS~gD 729 (875)
|||.|+.+--.++-..++. .+++.|++++++...+... ....+.++|+|||.--.=++.
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~~ 85 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRFGN 85 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBTTB
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhccC
Confidence 4788776554444444544 4455689988877654310 123467899999854433333
No 148
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=35.57 E-value=61 Score=31.35 Aligned_cols=85 Identities=9% Similarity=0.003 Sum_probs=51.9
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHH-cCCeeEEEEeec-cc---------------------------ccccCccCccEE
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQV-CGFEVWDITVQD-LL---------------------------ENKITLDRFKGL 719 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~-aG~~v~~V~~~d-l~---------------------------~~~~~l~~~d~l 719 (875)
..||++|+-|-.+++-..++.++.+ .|.+...|.... .. ....++.+||.|
T Consensus 12 ~~mkilIvY~S~tGnT~~vA~~Ia~~l~~d~~~I~~~~~y~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yD~i 91 (171)
T 4ici_A 12 SNSKILVAYFSATGTTARAAEKLGAAVGGDLYPIAPAQPYTSADLDWNNKRSRSSVEMNDPKMRPAIKSKKENIGTYDVV 91 (171)
T ss_dssp -CCCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCBSSCCCTGGGCTTCTTSHHHHHHHCTTCCCCBSCCCTTGGGCSEE
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHhCCCeEEEeeCCCCCccccchhhHhHHHHHHHhcccCCcccccccccHhHCCEE
Confidence 4678999999999988989888877 577655543211 00 112467899999
Q ss_pred EEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEeh
Q psy5570 720 VFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCN 767 (875)
Q Consensus 720 vlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICn 767 (875)
||..--=++..+ +.+.+++++..- .|+++.-+|.
T Consensus 92 ilg~Pvy~g~~~-------------~~~~~fl~~~~l-~gk~v~~f~t 125 (171)
T 4ici_A 92 FIGYPIWWDLAP-------------RIINTFIEGHSL-KGKTVVPFAT 125 (171)
T ss_dssp EEEEECBTTBCC-------------HHHHHHHHHSCC-TTSEEEEEEE
T ss_pred EEecccccCCch-------------HHHHHHHHHcCC-CcCEEEEEEe
Confidence 885443323222 234444444322 4788888773
No 149
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=35.27 E-value=62 Score=30.36 Aligned_cols=59 Identities=8% Similarity=0.076 Sum_probs=38.4
Q ss_pred eEEEEEecCCCCCHHHHHHHH-HHc-CCeeEEEEee--------------------------cccccccCccCccEEEEc
Q psy5570 671 ISIAVLREEGINGDREMSAMA-QVC-GFEVWDITVQ--------------------------DLLENKITLDRFKGLVFP 722 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~-~~a-G~~v~~V~~~--------------------------dl~~~~~~l~~~d~lvlP 722 (875)
+||+|+-+-.+++-..++.++ +.. |.+...|... ++.....++.+||+|||.
T Consensus 4 ~kilIvY~S~tGnT~~iA~~Ia~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~~d~iilG 83 (151)
T 3edo_A 4 KKTLILYYSWSGETKKMAEKINSEIKDSELKEVKVSEGTFDADXYKTSDIALDQIQGNKDFPEIQLDNIDYNNYDLILIG 83 (151)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHSTTCEEEECBCCTTSSCSSHHHHHHHHHHHHTTSSCCCCCBCCCCCGGGCSEEEEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHhccCCCEEEEEcCCCCCCchhhhhhHHHHHHHhcccCCcccchhhhCHhhCCEEEEE
Confidence 478888888888888899998 555 7665444320 111223467899999887
Q ss_pred CCcCccc
Q psy5570 723 GGFSYAD 729 (875)
Q Consensus 723 GGfS~gD 729 (875)
.-.=+|.
T Consensus 84 ~P~~~g~ 90 (151)
T 3edo_A 84 SPVWSGY 90 (151)
T ss_dssp EEEETTE
T ss_pred cceeccc
Confidence 5544443
No 150
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=33.83 E-value=1.2e+02 Score=27.43 Aligned_cols=79 Identities=8% Similarity=-0.012 Sum_probs=49.5
Q ss_pred ccceEEEEEecCCCCCHH---HHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhc
Q psy5570 668 KKVISIAVLREEGINGDR---EMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLN 744 (875)
Q Consensus 668 ~~~~kVaIlv~pG~n~~~---e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~ 744 (875)
.++|||.+++.-|...-. -|..+.++.|.++++.... ...-+..++++|.|++.=...|
T Consensus 4 ~~~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~-~~~~~~~~~~~DvvLLgPQV~y----------------- 65 (108)
T 3nbm_A 4 SKELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGA-YGAHYDIMGVYDLIILAPQVRS----------------- 65 (108)
T ss_dssp -CCEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEE-TTSCTTTGGGCSEEEECGGGGG-----------------
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcc-hHHHHhhccCCCEEEEChHHHH-----------------
Confidence 357899998887765332 2345666679888775422 2223445788999988655553
Q ss_pred hhHHHHHHHHHHCCCceEEEEe
Q psy5570 745 EGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 745 ~~i~~~v~~f~~r~g~~vLGIC 766 (875)
..+.+++.+++.|+|+.-|-
T Consensus 66 --~~~~ik~~~~~~~ipV~vI~ 85 (108)
T 3nbm_A 66 --YYREMKVDAERLGIQIVATR 85 (108)
T ss_dssp --GHHHHHHHHTTTTCEEEECC
T ss_pred --HHHHHHHHhhhcCCcEEEeC
Confidence 23455666654588988764
No 151
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=33.13 E-value=60 Score=30.97 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=37.4
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHH----cCCeeEEEEeecccccccCccCccEEEEcCCcC-ccccccc
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQV----CGFEVWDITVQDLLENKITLDRFKGLVFPGGFS-YADALGS 733 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~----aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS-~gD~l~~ 733 (875)
..+|+.|+-+-.+++-..++.++.+ .|+++.++.+.+.. ..++.++|.|||..-.- +|+.+..
T Consensus 8 ~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~--~~~l~~~d~ii~g~pt~g~G~~p~~ 75 (167)
T 1ykg_A 8 EMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK--FKQIASEKLLIVVTSTQGEGEPPEE 75 (167)
T ss_dssp ----CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCC--GGGGGGCSEEEEEEECBGGGBCCGG
T ss_pred CCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCC--HHHhccCCeEEEEEcccCCCcCChh
Confidence 4568888888888887777666544 48888776654322 33577888777743322 3444433
No 152
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=32.61 E-value=20 Score=35.13 Aligned_cols=53 Identities=21% Similarity=0.426 Sum_probs=39.3
Q ss_pred cCccEEEEcCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehhHHHHHhcCCC
Q psy5570 714 DRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778 (875)
Q Consensus 714 ~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnGfQiL~elGlL 778 (875)
.+.|.|||=||-+.+..--. -+.+.+.+.+.++. ++-++|||. |.++-++||.
T Consensus 83 ~~~D~vVllGGLAMPk~~v~----------~e~v~~li~ki~~~-~~kiiGvCF-ms~F~kagW~ 135 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGSD----------IEDVKKLVEDALEE-GGELMGLCY-MDMFARAGWY 135 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSCC----------HHHHHHHHHHHEEE-EEEEEEEEE-TTHHHHTTHH
T ss_pred CCCCEEEEeccccCCCCCCC----------HHHHHHHHHHhhcC-CCCEEEEEh-HHHHHHcCCC
Confidence 58999999999998876544 35677777777753 677999993 2344478875
No 153
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=32.14 E-value=23 Score=39.71 Aligned_cols=45 Identities=22% Similarity=0.383 Sum_probs=30.3
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
.-+...+++.|+++....+- | +... ...++++|.||..||.|.|+
T Consensus 211 ~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g~ 261 (419)
T 2fts_A 211 STLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVSMGE 261 (419)
T ss_dssp HHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCSSSC
T ss_pred HHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCC
Confidence 45677888899998876542 1 1110 11245689999999999875
No 154
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=31.74 E-value=67 Score=30.63 Aligned_cols=82 Identities=11% Similarity=0.062 Sum_probs=49.6
Q ss_pred eEEEEEecCCCCCHHHHHHHHHH-cCCeeEEEEee-c---------------------------ccccccCccCccEEEE
Q psy5570 671 ISIAVLREEGINGDREMSAMAQV-CGFEVWDITVQ-D---------------------------LLENKITLDRFKGLVF 721 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~-aG~~v~~V~~~-d---------------------------l~~~~~~l~~~d~lvl 721 (875)
+|++|+-|-.+++-..++.++.+ .|.+...+... + +.....++.+||.|+|
T Consensus 5 ~kilIvY~S~tG~T~~vA~~Ia~~l~~~~~~i~~~~~y~~~~l~~~~~~~~~~~e~~~~~~~p~i~~~~~~l~~yd~iil 84 (162)
T 3klb_A 5 RKILVAYFSCSGVTKAVAEKLAAITGADLYEIKPEVPYTEADLDWNDKKSRSSVEMRDALSRPAISGTLFHPEKYEVLFV 84 (162)
T ss_dssp SCEEEEECCSSSHHHHHHHHHHHHHTCEEEECCBSSCCCTGGGCTTCTTSHHHHHHTCTTCCCCBSCCCSCGGGCSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHHHhCCCeEEEEeCCcCCccccchhhHHHHHHHHHhccccCccccccccChhhCCEEEE
Confidence 47899888888888888888877 58765544211 0 1111245788999988
Q ss_pred cCCcCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEe
Q psy5570 722 PGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 722 PGGfS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGIC 766 (875)
-.-.=+|... +.+.+++++. +-.|+++..+|
T Consensus 85 G~P~~~g~~~-------------~~~~~fl~~~-~l~gk~v~~f~ 115 (162)
T 3klb_A 85 GFPVWWYIAP-------------TIINTFLESY-DFAGKIVVPFA 115 (162)
T ss_dssp EEECBTTBCC-------------HHHHHHHHTS-CCTTCEEEEEE
T ss_pred EcccccCCCC-------------HHHHHHHHhc-CCCCCEEEEEE
Confidence 5443333222 2344444443 12488888888
No 155
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=31.49 E-value=40 Score=32.77 Aligned_cols=60 Identities=10% Similarity=0.145 Sum_probs=37.5
Q ss_pred cceEEEEEecCCCCC-------HHHHHHHHHHcCCeeEEEEee-c----cccc-ccCcc--CccEEEEcCCcCccc
Q psy5570 669 KVISIAVLREEGING-------DREMSAMAQVCGFEVWDITVQ-D----LLEN-KITLD--RFKGLVFPGGFSYAD 729 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~-------~~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~--~~d~lvlPGGfS~gD 729 (875)
++|||+|+. -|.+. -.-+...|++.|+++....+- | +... ...++ ++|.||..||-|.++
T Consensus 12 ~~~rv~Ii~-tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 86 (169)
T 1y5e_A 12 KEVRCKIVT-ISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITK 86 (169)
T ss_dssp CCCEEEEEE-ECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSST
T ss_pred cCCEEEEEE-EcCccCeeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 467999884 33321 133477888899998765432 1 1111 11234 799999999999763
No 156
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=30.53 E-value=50 Score=34.44 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=55.6
Q ss_pred ceEEEEEecC-CCC-CHHHHHHHHHHcCCeeEEEEeeccccc--c------cCccCccEEEEcCCcCccccccchhHHHH
Q psy5570 670 VISIAVLREE-GIN-GDREMSAMAQVCGFEVWDITVQDLLEN--K------ITLDRFKGLVFPGGFSYADALGSAKGWAA 739 (875)
Q Consensus 670 ~~kVaIlv~p-G~n-~~~e~~~A~~~aG~~v~~V~~~dl~~~--~------~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ 739 (875)
.|+|+|.+-+ ..+ ...++..+|++.|+++..+..-++... + ..+.+||.|||.-.-+ .+ .|..
T Consensus 21 g~~vlvtr~~~~~~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~na----V~---~~~~ 93 (286)
T 1jr2_A 21 HMKVLLLKDAKEDDCGQDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSPRA----VE---AAEL 93 (286)
T ss_dssp -CEEEEEESSCCCBTTBCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCHHH----HH---HHHH
T ss_pred CCEEEEEcCCCCCCCCCcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCHHH----HH---HHHH
Confidence 4689988765 432 125678899999999987754322211 1 2457899999865433 11 1222
Q ss_pred HHhhchhHH----HHHHHHHHCCCceEEEEehhH-HHHHhcCCCC
Q psy5570 740 SLLLNEGIK----TQLNKFIARSDTFSFGVCNGC-QLMNLLGWFS 779 (875)
Q Consensus 740 ail~~~~i~----~~v~~f~~r~g~~vLGICnGf-QiL~elGlLp 779 (875)
.+. ..... +.+++-+. +.++.+|.-+. +.|-+.|+-+
T Consensus 94 ~l~-~~~~~~~~~~d~~~~l~--~~~i~aVG~~Ta~aL~~~G~~~ 135 (286)
T 1jr2_A 94 CLE-QNNKTEVWERSLKEKWN--AKSVYVVGNATASLVSKIGLDT 135 (286)
T ss_dssp HHH-HTTCHHHHHHHTHHHHH--HSEEEECSHHHHHHHHHTTCCC
T ss_pred HHH-hccccccchhhHHHHhc--cCcEEEECHHHHHHHHHcCCCc
Confidence 211 11110 01222222 46777777554 5788889765
No 157
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=30.00 E-value=85 Score=31.09 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=42.3
Q ss_pred cceEEEEEecCCCCCHHHHHHHHHH----cCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHH
Q psy5570 669 KVISIAVLREEGINGDREMSAMAQV----CGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGW 737 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~A~~~----aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~ 737 (875)
..++|.|+-.--+++-..++.++.+ .|+++.++.+.+.. .++.++|.|||-.-.-.|+.+.....|
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~~---~~l~~~d~vi~g~~Ty~G~~p~~~~~f 89 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSHA---GNLPREGAVLIVTASYNGHPPDNAKQF 89 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGST---TCCCSSSEEEEEECCBTTBCCTTTHHH
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHhh---hhhhhCCeEEEEEeecCCCcCHHHHHH
Confidence 4567888877777777777666543 58888877665532 257788877775444356666553333
No 158
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=29.55 E-value=22 Score=36.99 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=33.4
Q ss_pred cceEEEEEecCCCCCHHHH--------HHHHHHcCCeeEEEEeecccccccCccCccEEEEc
Q psy5570 669 KVISIAVLREEGINGDREM--------SAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFP 722 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~--------~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlP 722 (875)
.+|||+|+ +-|...++++ +.||++.|+++..+...+....-..+.++|.++.-
T Consensus 2 ~~m~v~vl-~gg~s~e~~vs~~s~~~v~~al~~~g~~v~~i~~~~~~~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 2 NAMRIGVI-MGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLA 62 (307)
T ss_dssp CCEEEEEE-ECCSHHHHHHHHHHHHHHHHHSCTTTEEEEEEECSSGGGHHHHTTTCSEEEEC
T ss_pred CCcEEEEE-eCCCCcchHhHHHHHHHHHHHHHHCCCEEEEEcccCchhHHHhccCCCEEEEe
Confidence 47899998 5565555443 56777789999888765322111234577866553
No 159
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=29.49 E-value=37 Score=38.03 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=30.2
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
.-+...+++.|+++....+- | +... ...++++|.||..||.|.|+
T Consensus 207 ~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~g~ 257 (411)
T 1g8l_A 207 LAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGE 257 (411)
T ss_dssp HHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCSSS
T ss_pred HHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCCCC
Confidence 45677888899998876542 1 1110 11235789999999999864
No 160
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=27.72 E-value=75 Score=30.55 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=36.8
Q ss_pred eEEEEEecCCCCCHHHHHH----HHHH-cCCeeEEEEeeccc-----------------ccccCccCccEEEEcCCcCcc
Q psy5570 671 ISIAVLREEGINGDREMSA----MAQV-CGFEVWDITVQDLL-----------------ENKITLDRFKGLVFPGGFSYA 728 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~----A~~~-aG~~v~~V~~~dl~-----------------~~~~~l~~~d~lvlPGGfS~g 728 (875)
|||.|+.+-..++-..++. .+++ .|++++++...+.. .....+.++|+|||.--.=++
T Consensus 2 mkilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~~ 81 (198)
T 3b6i_A 2 AKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFG 81 (198)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEETT
T ss_pred CeEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhcC
Confidence 5787776554444444544 4455 68888888766421 113467899999986544344
Q ss_pred ccc
Q psy5570 729 DAL 731 (875)
Q Consensus 729 D~l 731 (875)
...
T Consensus 82 ~~~ 84 (198)
T 3b6i_A 82 NMS 84 (198)
T ss_dssp EEC
T ss_pred Cch
Confidence 443
No 161
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=26.28 E-value=63 Score=33.90 Aligned_cols=59 Identities=15% Similarity=0.110 Sum_probs=36.4
Q ss_pred cceEEEEEecCCCCCHHHH--------HHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCcc
Q psy5570 669 KVISIAVLREEGINGDREM--------SAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYA 728 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~--------~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~g 728 (875)
.++||+|+ +-|...++|+ +.||++.|++|..+...|.......-..+|.++..=.+.+|
T Consensus 12 ~~~~v~vl-~gg~s~E~~vsl~s~~~v~~al~~~g~~v~~i~~~~~~~~~l~~~~~D~v~~~~hg~~g 78 (317)
T 4eg0_A 12 RFGKVAVL-FGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHGGYG 78 (317)
T ss_dssp GGCEEEEE-CCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCTTHHHHTTCCEEEECCCSGGG
T ss_pred hcceEEEE-ECCCCCcceeeHHHHHHHHHHHHHCCCEEEEEeCCCchHHHhhhcCCCEEEEcCCCCCC
Confidence 46789987 7787777654 67889999999988643221111111457776654444444
No 162
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=26.01 E-value=97 Score=32.88 Aligned_cols=78 Identities=14% Similarity=0.124 Sum_probs=43.6
Q ss_pred eEEEEEecCCCCCH----HHHHHHHHHcCCeeEEEEee--cc-----------------cc---cccCccCccEEEEcCC
Q psy5570 671 ISIAVLREEGINGD----REMSAMAQVCGFEVWDITVQ--DL-----------------LE---NKITLDRFKGLVFPGG 724 (875)
Q Consensus 671 ~kVaIlv~pG~n~~----~e~~~A~~~aG~~v~~V~~~--dl-----------------~~---~~~~l~~~d~lvlPGG 724 (875)
+||+|+.-|+...- .++...|++.|+++.+.... ++ .. .+...+++|.+|.-||
T Consensus 5 ~ki~iI~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~~GG 84 (307)
T 1u0t_A 5 RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADGCELVLVLGG 84 (307)
T ss_dssp CEEEEEESSSGGGGSHHHHHHHHHHHTTTCEEEEEC-----------------------------------CCCEEEEEC
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccCCCEEEEEeC
Confidence 37999988887643 34566778889987654221 11 00 0012346788877775
Q ss_pred cCccccccchhHHHHHHhhchhHHHHHHHHHHCCCceEEEEehh
Q psy5570 725 FSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNG 768 (875)
Q Consensus 725 fS~gD~l~~s~~~a~ail~~~~i~~~v~~f~~r~g~~vLGICnG 768 (875)
| -.+..+++.+... +.|++||=.|
T Consensus 85 ----D---------------GT~l~a~~~~~~~-~~pvlgi~~G 108 (307)
T 1u0t_A 85 ----D---------------GTFLRAAELARNA-SIPVLGVNLG 108 (307)
T ss_dssp ----H---------------HHHHHHHHHHHHH-TCCEEEEECS
T ss_pred ----C---------------HHHHHHHHHhccC-CCCEEEEeCC
Confidence 2 1234455666653 7999999544
No 163
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=25.97 E-value=1.7e+02 Score=26.10 Aligned_cols=50 Identities=10% Similarity=0.118 Sum_probs=30.5
Q ss_pred EEEEecCCCCCHHHHHHH----HHHcCCeeEEEEeecccccccCccCccEEEEcCC
Q psy5570 673 IAVLREEGINGDREMSAM----AQVCGFEVWDITVQDLLENKITLDRFKGLVFPGG 724 (875)
Q Consensus 673 VaIlv~pG~n~~~e~~~A----~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGG 724 (875)
|.|+-+-.+++-..++.+ ++..|++++.+...|.. ..++.++|.|||..-
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~--~~~l~~~d~vi~g~p 55 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTN--VDDVASKDVILLGCP 55 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCC--HHHHHTCSEEEEECC
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCC--HHHHhcCCEEEEEcc
Confidence 445545555655555544 44568888887655322 234788999888543
No 164
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=25.06 E-value=81 Score=30.23 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=37.0
Q ss_pred eEEEEEecCCCCCHHHHHHHHHH-cCC-eeEEEEeecccccccCccCccEEEEcCCc-Cccccc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQV-CGF-EVWDITVQDLLENKITLDRFKGLVFPGGF-SYADAL 731 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~~-aG~-~v~~V~~~dl~~~~~~l~~~d~lvlPGGf-S~gD~l 731 (875)
|||.|+-+-.+++-..++.++.+ .+. .+.++...+. ...++.++|.|||.-.. -+|+.+
T Consensus 1 Mki~IvY~S~tGnT~~iA~~Ia~~l~~~~v~i~~~~~~--~~~~l~~~d~ii~g~pt~~~G~~p 62 (175)
T 1ag9_A 1 AITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKS--SKEDLEAYDILLLGIPTWYYGEAQ 62 (175)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHCTTTEEEEEGGGC--CHHHHHTCSEEEEECCEETTTEEC
T ss_pred CEEEEEEECCCchHHHHHHHHHHHhccCceEEEEcccC--ChhHhhhCCEEEEEEeecCCCcCh
Confidence 57888878888888888888877 454 3444333321 12357789998886543 234443
No 165
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=24.81 E-value=1.4e+02 Score=26.86 Aligned_cols=48 Identities=19% Similarity=0.141 Sum_probs=30.2
Q ss_pred EEEecCCCCCHHHHHHH----HHHcCCeeEEEEeecccccccCccCccEEEEcC
Q psy5570 674 AVLREEGINGDREMSAM----AQVCGFEVWDITVQDLLENKITLDRFKGLVFPG 723 (875)
Q Consensus 674 aIlv~pG~n~~~e~~~A----~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPG 723 (875)
.|+-+-.+++-..++.+ +++.|++++++...+.. ..++.++|.|+|..
T Consensus 2 ~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~--~~~l~~~d~iiig~ 53 (138)
T 5nul_A 2 KIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVN--IDELLNEDILILGC 53 (138)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCC--HHHHTTCSEEEEEE
T ss_pred EEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCC--HHHHhhCCEEEEEc
Confidence 45545556666666554 45569988887665332 23578899887753
No 166
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=24.74 E-value=1.2e+02 Score=33.01 Aligned_cols=86 Identities=9% Similarity=0.004 Sum_probs=50.8
Q ss_pred ceEEEEEecCCCCCHHHHHHHHH----HcCCeeEEEEeeccccc--ccCccCccEEEEcCCcCccccccchhHHHHHHhh
Q psy5570 670 VISIAVLREEGINGDREMSAMAQ----VCGFEVWDITVQDLLEN--KITLDRFKGLVFPGGFSYADALGSAKGWAASLLL 743 (875)
Q Consensus 670 ~~kVaIlv~pG~n~~~e~~~A~~----~aG~~v~~V~~~dl~~~--~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~ 743 (875)
.+||.|+.+-.+++-..++.++. +.|++++.+...+.... ...+.++|+|||.----++....
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~~~~~----------- 324 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNNTMMP----------- 324 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTTBCCH-----------
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCcCchH-----------
Confidence 46898887777777776665544 46888877765432211 12577999999875543333332
Q ss_pred chhHHHHHHHHHH--C-CCceEEEEehh
Q psy5570 744 NEGIKTQLNKFIA--R-SDTFSFGVCNG 768 (875)
Q Consensus 744 ~~~i~~~v~~f~~--r-~g~~vLGICnG 768 (875)
.+++++..+.. - .||++.-+|.|
T Consensus 325 --~~k~fld~l~~~~~~~~K~~~~~~t~ 350 (414)
T 2q9u_A 325 --SVAAALNYVRGLTLIKGKPAFAFGAF 350 (414)
T ss_dssp --HHHHHHHHHHHHTTTTTSBEEEEEEE
T ss_pred --HHHHHHHHHHhhcccCCCEEEEEEec
Confidence 23333333221 1 38888877744
No 167
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=24.36 E-value=43 Score=37.39 Aligned_cols=45 Identities=22% Similarity=0.125 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCeeEEEEee-c----cccc-ccCccCccEEEEcCCcCccc
Q psy5570 685 REMSAMAQVCGFEVWDITVQ-D----LLEN-KITLDRFKGLVFPGGFSYAD 729 (875)
Q Consensus 685 ~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~~~d~lvlPGGfS~gD 729 (875)
.-+...+++.|+++....+- | +... ...++++|.||..||.|.|+
T Consensus 210 ~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s~g~ 260 (402)
T 1uz5_A 210 RALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGASGGT 260 (402)
T ss_dssp HHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC----
T ss_pred HHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCCCCC
Confidence 45677888899998876542 1 1110 11244689999999999764
No 168
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=24.17 E-value=47 Score=32.47 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=36.9
Q ss_pred cceEEEEEecCCCCC-------HHHHHHHHHHcCCeeEEEEee-c----cccc-ccCcc--CccEEEEcCCcCccc
Q psy5570 669 KVISIAVLREEGING-------DREMSAMAQVCGFEVWDITVQ-D----LLEN-KITLD--RFKGLVFPGGFSYAD 729 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~-------~~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~--~~d~lvlPGGfS~gD 729 (875)
++|||+|+. -|.+. -.-+...|++.|+++....+- | +... ...++ ++|.||..||-|.++
T Consensus 9 ~~~~v~Ii~-tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~ 83 (172)
T 1mkz_A 9 IPTRIAILT-VSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTE 83 (172)
T ss_dssp CCCEEEEEE-ECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSST
T ss_pred CCCEEEEEE-EeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCC
Confidence 467999884 23321 133477888899998765432 1 1111 11133 499999999998864
No 169
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=23.24 E-value=73 Score=33.22 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=37.4
Q ss_pred eEEEEEecCCCCCH---HHHHHHHHHcCCeeEEEEeecccccccCccCccEEEEcCCcCccccccchhHHHHHHhhchhH
Q psy5570 671 ISIAVLREEGINGD---REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGI 747 (875)
Q Consensus 671 ~kVaIlv~pG~n~~---~e~~~A~~~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~a~ail~~~~i 747 (875)
||++|+.-+..+.. .++...|++.|+++. .+++|.+|.-|| | | .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~-------------~~~~D~vv~lGG----D---------G------T~ 48 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD-------------DVEPEIVISIGG----D---------G------TF 48 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC-------------SSSCSEEEEEES----H---------H------HH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC-------------CCCCCEEEEEcC----c---------H------HH
Confidence 57888865421111 123444666788761 357899998886 2 1 23
Q ss_pred HHHHHHHHHC-CCceEEEEeh
Q psy5570 748 KTQLNKFIAR-SDTFSFGVCN 767 (875)
Q Consensus 748 ~~~v~~f~~r-~g~~vLGICn 767 (875)
..+.+.+... .+.|+|||=.
T Consensus 49 l~aa~~~~~~~~~~PilGIn~ 69 (272)
T 2i2c_A 49 LSAFHQYEERLDEIAFIGIHT 69 (272)
T ss_dssp HHHHHHTGGGTTTCEEEEEES
T ss_pred HHHHHHHhhcCCCCCEEEEeC
Confidence 3344555442 3789999953
No 170
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=22.95 E-value=62 Score=31.72 Aligned_cols=56 Identities=16% Similarity=0.228 Sum_probs=34.4
Q ss_pred cceEEEEEecCCCCCHHHHHH----HHHHcCCeeEEEEeecc-----------------------cccccCccCccEEEE
Q psy5570 669 KVISIAVLREEGINGDREMSA----MAQVCGFEVWDITVQDL-----------------------LENKITLDRFKGLVF 721 (875)
Q Consensus 669 ~~~kVaIlv~pG~n~~~e~~~----A~~~aG~~v~~V~~~dl-----------------------~~~~~~l~~~d~lvl 721 (875)
..|||+|+.+--.++-..++. .+++.|.+++.+...+. ......+.++|+|||
T Consensus 5 ~mmkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~ 84 (211)
T 1ydg_A 5 APVKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVF 84 (211)
T ss_dssp CCCEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEE
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEE
Confidence 357888876544444444544 44556999988876553 111224678999988
Q ss_pred cCC
Q psy5570 722 PGG 724 (875)
Q Consensus 722 PGG 724 (875)
.--
T Consensus 85 gsP 87 (211)
T 1ydg_A 85 SSP 87 (211)
T ss_dssp EEE
T ss_pred EcC
Confidence 643
No 171
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=22.46 E-value=87 Score=32.68 Aligned_cols=76 Identities=14% Similarity=0.053 Sum_probs=42.4
Q ss_pred eEEEEEecCCCCCH----HHHHHHHHHcCCeeEEEEee--ccc-------ccccCccCccEEEEcCCcCccccccchhHH
Q psy5570 671 ISIAVLREEGINGD----REMSAMAQVCGFEVWDITVQ--DLL-------ENKITLDRFKGLVFPGGFSYADALGSAKGW 737 (875)
Q Consensus 671 ~kVaIlv~pG~n~~----~e~~~A~~~aG~~v~~V~~~--dl~-------~~~~~l~~~d~lvlPGGfS~gD~l~~s~~~ 737 (875)
+|++|+.-|+.+.. .++...|++.|+++...... ++. ..+...+++|.||.-|| |
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GG----D-------- 73 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGG----D-------- 73 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSC----H--------
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcC----c--------
Confidence 47999888765432 34567788899987653211 100 00011246899999886 2
Q ss_pred HHHHhhchhHHHHHHHHHHCCCceEEEEe
Q psy5570 738 AASLLLNEGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 738 a~ail~~~~i~~~v~~f~~r~g~~vLGIC 766 (875)
-.+.++++.+... +.|+|||=
T Consensus 74 -------GT~l~a~~~~~~~-~~P~lGI~ 94 (292)
T 2an1_A 74 -------GNMLGAARTLARY-DINVIGIN 94 (292)
T ss_dssp -------HHHHHHHHHHTTS-SCEEEEBC
T ss_pred -------HHHHHHHHHhhcC-CCCEEEEE
Confidence 1244456666664 78999984
No 172
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=22.37 E-value=55 Score=32.60 Aligned_cols=61 Identities=20% Similarity=0.252 Sum_probs=35.9
Q ss_pred cceEEEEEec-----CCCCCH---HHHHHHHHH---cCCeeEEEEee-c----cccc-ccCcc--CccEEEEcCCcCccc
Q psy5570 669 KVISIAVLRE-----EGINGD---REMSAMAQV---CGFEVWDITVQ-D----LLEN-KITLD--RFKGLVFPGGFSYAD 729 (875)
Q Consensus 669 ~~~kVaIlv~-----pG~n~~---~e~~~A~~~---aG~~v~~V~~~-d----l~~~-~~~l~--~~d~lvlPGGfS~gD 729 (875)
++|||+||.- .|.--+ .-+...|++ .|+++....+- | +... ...++ ++|.||..||.|.++
T Consensus 13 ~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~ 92 (189)
T 1jlj_A 13 HQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAP 92 (189)
T ss_dssp CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC
Confidence 4678998842 121111 234667777 79988765432 1 1111 11133 699999999999863
No 173
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=22.32 E-value=37 Score=33.02 Aligned_cols=60 Identities=18% Similarity=0.155 Sum_probs=36.3
Q ss_pred cceEEEEEecCCCC---------CHHHHHHHHHHcCCeeEEEEe-eccc---cc-ccCc-cCccEEEEcCCcCccc
Q psy5570 669 KVISIAVLREEGIN---------GDREMSAMAQVCGFEVWDITV-QDLL---EN-KITL-DRFKGLVFPGGFSYAD 729 (875)
Q Consensus 669 ~~~kVaIlv~pG~n---------~~~e~~~A~~~aG~~v~~V~~-~dl~---~~-~~~l-~~~d~lvlPGGfS~gD 729 (875)
.+|||+||.. |.+ |-.-+...+++.|+++....+ .|=. .. ...+ +++|.||..||.|.|+
T Consensus 6 ~~~rv~ii~t-GdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd~~i~~al~~a~~~~~DlVittGG~s~g~ 80 (164)
T 3pzy_A 6 TTRSARVIIA-STRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVADGSPVGEALRKAIDDDVDVILTSGGTGIAP 80 (164)
T ss_dssp -CCEEEEEEE-CHHHHC----CCHHHHHHHHHHHTTCEECCCEEECSSHHHHHHHHHHHHTTCSEEEEESCCSSST
T ss_pred CCCEEEEEEE-CCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeCCHHHHHHHHHHHHhCCCCEEEECCCCCCCC
Confidence 4678998842 221 113447788889998875433 2211 10 1123 3799999999999865
No 174
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=22.10 E-value=1e+02 Score=33.96 Aligned_cols=78 Identities=23% Similarity=0.277 Sum_probs=52.2
Q ss_pred eEEEEEecCCCCCHH-HHHHHHHHcCCeeEEEEeeccccc--------------ccCccCccEEEEcCCcCccccccchh
Q psy5570 671 ISIAVLREEGINGDR-EMSAMAQVCGFEVWDITVQDLLEN--------------KITLDRFKGLVFPGGFSYADALGSAK 735 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~-e~~~A~~~aG~~v~~V~~~dl~~~--------------~~~l~~~d~lvlPGGfS~gD~l~~s~ 735 (875)
.|+.|+.+++..... .+...|+.+|+++..+.+.+.... +..+.+.|.||--||+|-+|.-
T Consensus 44 ~rvlIVtd~~v~~~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGGsv~D~a---- 119 (368)
T 3qbe_A 44 HKVAVVHQPGLAETAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGGAATDVA---- 119 (368)
T ss_dssp SEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESHHHHHHH----
T ss_pred CEEEEEECccHHHHHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHH----
Confidence 489999888875332 346678889999876655322111 1234567999999999988743
Q ss_pred HHHHHHhhchhHHHHHHHHHHCCCceEEEEe
Q psy5570 736 GWAASLLLNEGIKTQLNKFIARSDTFSFGVC 766 (875)
Q Consensus 736 ~~a~ail~~~~i~~~v~~f~~r~g~~vLGIC 766 (875)
||+++. +.| |.|+..|-
T Consensus 120 k~~Aa~-------------~~r-gip~i~IP 136 (368)
T 3qbe_A 120 GFAAAT-------------WLR-GVSIVHLP 136 (368)
T ss_dssp HHHHHH-------------GGG-CCEEEEEE
T ss_pred HHHHHH-------------hcc-CCcEEEEC
Confidence 555543 234 89998888
No 175
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=22.03 E-value=33 Score=33.24 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=35.2
Q ss_pred eEEEEEec-----CCCCC---HHHHHHHHHHcCCeeEEEEee-c----cccc-ccCcc--CccEEEEcCCcCccc
Q psy5570 671 ISIAVLRE-----EGING---DREMSAMAQVCGFEVWDITVQ-D----LLEN-KITLD--RFKGLVFPGGFSYAD 729 (875)
Q Consensus 671 ~kVaIlv~-----pG~n~---~~e~~~A~~~aG~~v~~V~~~-d----l~~~-~~~l~--~~d~lvlPGGfS~gD 729 (875)
|||+|+.- +|.-- -.-+...|++.|+++....+- | +... ...++ ++|.||..||.|.++
T Consensus 2 ~~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~ 76 (164)
T 2is8_A 2 FRVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAP 76 (164)
T ss_dssp EEEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred cEEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCC
Confidence 57777742 22211 234577788899988765432 1 1111 11234 699999999999763
No 176
>3c9u_A Thiamine monophosphate kinase; beta barrel, alpha-beta structure, transferase; HET: TPP ADP; 1.48A {Aquifex aeolicus} SCOP: d.79.4.1 d.139.1.1 PDB: 3c9r_A* 3c9t_A* 3c9s_A* 1vqv_A
Probab=21.92 E-value=11 Score=41.15 Aligned_cols=34 Identities=6% Similarity=-0.045 Sum_probs=28.8
Q ss_pred HhhhhcccCCChHHHHhcCCcccccCCCCCCCceEEEeCCc
Q psy5570 450 FFQCAESFYDRMTECVYSSPLTSFNHGIKPDPWFYVDVMGK 490 (875)
Q Consensus 450 ~i~s~hdvsDGL~~al~eMa~~~~~~G~~~~~~~~Idl~~~ 490 (875)
.+.+++|++|||+.++.||+ .++++|++ ||....
T Consensus 237 ~v~a~~DiSdGL~~~L~eia-~~sgvg~~------Id~~~i 270 (342)
T 3c9u_A 237 YANASMDISDGLVADANHLA-QRSGVKIE------ILSEKL 270 (342)
T ss_dssp HCSEEEEESSCHHHHHHHHH-HHHTCEEE------ECGGGS
T ss_pred cCeEEEECCchHHHHHHHHH-HHhCCeEE------EehhcC
Confidence 46889999999999999999 88889988 776543
No 177
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=21.33 E-value=1.6e+02 Score=27.09 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=36.7
Q ss_pred eEEEEEecCCCCCHHHHHHHHH----HcCCeeEEEEeecccccccCccCccEEEEcCCcC-ccccccc
Q psy5570 671 ISIAVLREEGINGDREMSAMAQ----VCGFEVWDITVQDLLENKITLDRFKGLVFPGGFS-YADALGS 733 (875)
Q Consensus 671 ~kVaIlv~pG~n~~~e~~~A~~----~aG~~v~~V~~~dl~~~~~~l~~~d~lvlPGGfS-~gD~l~~ 733 (875)
||+.|+-+-.+++-..++.++. ..|+++..+... ...++.++|.|+|....- +|+.+..
T Consensus 2 ~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~----~~~~l~~~d~vi~g~pt~g~g~~p~~ 65 (147)
T 2hna_A 2 ADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGP----LLEDLPASGIWLVISSTHGAGDIPDN 65 (147)
T ss_dssp CSEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCT----TSCSSCSEEEEEEECCTTTTCCTTSS
T ss_pred CeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCC----CHHHcccCCeEEEEECccCCCCCChh
Confidence 3677777777777777766554 457887765321 234577888888754332 4555544
Done!