RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5570
(875 letters)
>gnl|CDD|178745 PLN03206, PLN03206, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1307
Score = 216 bits (551), Expect = 5e-58
Identities = 92/207 (44%), Positives = 116/207 (56%), Gaps = 28/207 (13%)
Query: 573 KISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQ--YQ 630
I V V+ L+E +L +WE TS++LEKLQ C +E L +R P ++ +
Sbjct: 964 LIEVKVDGATCLSEKTASLRDMWEETSFQLEKLQRLESCVAQEKEGLKSRKAPTWKLSFT 1023
Query: 631 PVRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSAM 690
P D I+ AT KV A++REEG NGDREM+A
Sbjct: 1024 PAFTD-----------------------KKIMNATSKPKV---AIIREEGSNGDREMAAA 1057
Query: 691 AQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ 750
GFE WD+T+ DLL +I+LD F+G+VF GGFSYAD L SAKGWA S+ NE + Q
Sbjct: 1058 FYAAGFEPWDVTMSDLLNGRISLDDFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQ 1117
Query: 751 LNKFIARSDTFSFGVCNGCQLMNLLGW 777
+F R DTFS GVCNGCQLM LLGW
Sbjct: 1118 FQEFYNRPDTFSLGVCNGCQLMALLGW 1144
Score = 192 bits (489), Expect = 3e-50
Identities = 77/125 (61%), Positives = 88/125 (70%)
Query: 53 FTLARAPGFPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGP 112
F R PP I+V+ AL V+RL SV SKRFLT KVDRCVTGL+AQQQ VGP
Sbjct: 620 FEFKRVANKLEPLDIPPGITVMDALKRVLRLPSVCSKRFLTTKVDRCVTGLVAQQQTVGP 679
Query: 113 LHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 172
L PLADVAV+A H L G A +IGEQPIKGLVDPK AR+AV EALTNLV+AK++ L
Sbjct: 680 LQIPLADVAVIAQTHTGLTGGACAIGEQPIKGLVDPKAMARLAVGEALTNLVWAKVTALS 739
Query: 173 FLFAS 177
+ AS
Sbjct: 740 DVKAS 744
Score = 152 bits (385), Expect = 2e-37
Identities = 73/183 (39%), Positives = 104/183 (56%), Gaps = 36/183 (19%)
Query: 458 YDRMTECVYSSPLTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRT 517
+DRMTECVY PLTSF G+ P+P + V VM +G+ AL+E+N+
Sbjct: 130 HDRMTECVYPQPLTSFESGVVPEPVYTVPVMEEGRAALEEINK----------------- 172
Query: 518 KLCIVQRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVA 577
E+GLAFDE DL+YYT +FR+ +KR+PT+VE FD+AQSNSEHSRHWFF +
Sbjct: 173 --------EMGLAFDEQDLDYYTRLFRDDIKRDPTNVELFDIAQSNSEHSRHWFFSGKLV 224
Query: 578 VNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDDIV 637
++ +P+ TLF + + T L+ N+ ++ NS R + QP+R
Sbjct: 225 IDGQPM----PKTLFQMVKDT---LKANPNNSVIGFKD-NSSAIR---GFVVQPLRPVSP 273
Query: 638 GAT 640
G+
Sbjct: 274 GSP 276
Score = 60.9 bits (148), Expect = 2e-09
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSP-GKRERKKKTGRYLGKY 248
GR F + + D + +S P+RY DD+ + TE YP NPNGSP G GR+L
Sbjct: 1207 GRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQYPFNPNGSPLGIAALCSPDGRHLAMM 1266
Query: 249 GH 250
H
Sbjct: 1267 PH 1268
Score = 55.9 bits (135), Expect = 8e-08
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 368 TRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVYSSPLTSFNHGIKP 427
TR SR + + PL A +DRMTECVY PLTSF G+ P
Sbjct: 101 TRLERSRRYLLFSSSPLDESQIN---------AFAAMVHDRMTECVYPQPLTSFESGVVP 151
Query: 428 DPWFYVDVMGKGKVA 442
+P + V VM +G+ A
Sbjct: 152 EPVYTVPVMEEGRAA 166
>gnl|CDD|188163 TIGR01735, FGAM_synt, phosphoribosylformylglycinamidine synthase,
single chain form. This model represents a
single-molecule form of phosphoribosylformylglycinamidine
synthase, also called FGAM synthase, an enzyme of purine
de novo biosynthesis. This form is found mostly in
eukaryotes and Proteobacteria. In Bacillus subtilis PurL
(FGAM synthase II) and PurQ (FGAM synthase I), homologous
to different parts of this model, perform the equivalent
function; the unrelated small protein PurS is also
required and may be a third subunit [Purines,
pyrimidines, nucleosides, and nucleotides, Purine
ribonucleotide biosynthesis].
Length = 1310
Score = 205 bits (522), Expect = 2e-54
Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 24/206 (11%)
Query: 574 ISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVR 633
I ++VN +L+E L IWE TS++L++L+ N CA+EE+ L R GP
Sbjct: 980 IRISVNGATLLSEKRSELRDIWEETSFQLQRLRDNPECAEEEFEGLRDRDGPGL------ 1033
Query: 634 DDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVI-SIAVLREEGINGDREMSAMAQ 692
++ + V +DI + K V +A+LRE+G+NGDREM+A
Sbjct: 1034 -------------KLPLTF---DVNEDIAAPFINKGVKPKVAILREQGVNGDREMAAAFD 1077
Query: 693 VCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLN 752
GFE WD+ + DLL ++ LD F+GL GGFSY D LG+ KGWA S+L N ++ Q
Sbjct: 1078 RAGFEAWDVHMSDLLAGRVHLDEFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQ 1137
Query: 753 KFIARSDTFSFGVCNGCQLM-NLLGW 777
F R DTFS GVCNGCQ++ NLL W
Sbjct: 1138 AFFKRPDTFSLGVCNGCQMLSNLLEW 1163
Score = 166 bits (422), Expect = 5e-42
Identities = 56/120 (46%), Positives = 71/120 (59%)
Query: 53 FTLARAPGFPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGP 112
+ R PP + + +AL V+RL +V SKRFL DR V GL+A+ Q VGP
Sbjct: 628 RFVQRKAPMLQPLDIPPGLDLHEALERVLRLPAVASKRFLITIGDRSVGGLVARDQMVGP 687
Query: 113 LHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 172
TPLADVAV A + G A +IGE+P K L+DPK AR+AV EA+TNL A + DL
Sbjct: 688 WQTPLADVAVTAASFDTYTGEAMAIGERPPKALLDPKASARLAVGEAITNLAAALVGDLS 747
Score = 120 bits (303), Expect = 9e-28
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 28/133 (21%)
Query: 452 QCAESFYDRMTECVYSSPLTSF--NHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLF 509
Q A +DRMTE V + +F +P +DV+G G++AL++ NQ
Sbjct: 126 QAAALLHDRMTESVLPHEIEAFELFSVPEPLNLTTIDVLGGGRLALEKANQ--------- 176
Query: 510 IYFIVQRTKLCIVQRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRH 569
E+GLA DE +++Y T F +L+RNP+ VE AQ+NSEH RH
Sbjct: 177 ----------------ELGLALDEDEIDYLTKRF-QELQRNPSDVELMMFAQANSEHCRH 219
Query: 570 WFFKISVAVNNEP 582
F ++ +
Sbjct: 220 KIFNADWIIDGKK 232
Score = 64.4 bits (157), Expect = 2e-10
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPG 233
G AF + + D S +RY+DD+ TE YP+NPNGSPG
Sbjct: 1215 GYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPG 1258
>gnl|CDD|235394 PRK05297, PRK05297, phosphoribosylformylglycinamidine synthase;
Provisional.
Length = 1290
Score = 192 bits (491), Expect = 2e-50
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 29/238 (12%)
Query: 540 TDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNEDLGTLFLIWERTS 599
D L + S + + N+ +I + N + V +E L W TS
Sbjct: 932 RDAVEAILAEHGLSDCVHVIGKPNAGD------RIVITRNGKTVFSESRTELRRWWSETS 985
Query: 600 YELEKLQMNARCADEEYNSLVTRIGPKYQYQPVRDDIVGATLGKKVTRIGPKYQYQPVRD 659
Y++++L+ N CAD+E+++++ + P K + P +
Sbjct: 986 YQMQRLRDNPECADQEFDAILDQADPGLN---------------------VKLTFDP-NE 1023
Query: 660 DIVGATLGKKV-ISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKG 718
DI + +A+LRE+G+N EM+A GF+ D+ + DLL ++TL+ FKG
Sbjct: 1024 DIAAPFIATGARPKVAILREQGVNSHVEMAAAFDRAGFDAIDVHMSDLLAGRVTLEDFKG 1083
Query: 719 LVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG 776
LV GGFSY D LG+ +GWA S+L N ++ Q F AR DTF+ GVCNGCQ+M+ L
Sbjct: 1084 LVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLK 1141
Score = 157 bits (400), Expect = 3e-39
Identities = 48/103 (46%), Positives = 63/103 (61%)
Query: 70 NISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHND 129
I + +A+ V+RL +V SK FL DR VTGL+A+ Q VGP P+AD AV A ++
Sbjct: 625 GIDLAEAVERVLRLPTVASKSFLITIGDRSVTGLVARDQMVGPWQVPVADCAVTAASYDG 684
Query: 130 LRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 172
G A ++GE+ L+D ARMAV EALTN+ A I DLK
Sbjct: 685 YAGEAMAMGERTPVALLDAAASARMAVGEALTNIAAAPIGDLK 727
Score = 104 bits (263), Expect = 7e-23
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 28/117 (23%)
Query: 458 YDRMTECVYSSP--LTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQ 515
+DRMTE V++ + +P P VDV+G G+ AL+ N +LG
Sbjct: 128 HDRMTESVFADLDDAEALFSHHEPKPLTSVDVLGGGRAALEAANVELG------------ 175
Query: 516 RTKLCIVQRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFF 572
LA E +++Y + F KL RNPT VE AQ+NSEH RH F
Sbjct: 176 -------------LALAEDEIDYLVEAF-TKLGRNPTDVELMMFAQANSEHCRHKIF 218
Score = 54.0 bits (131), Expect = 3e-07
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPG 233
GR F + + L+ + +RYVD++ ++TE YP NPNGSP
Sbjct: 1195 GRAEFPDAHLA-ALEAKGLVALRYVDNHGQVTETYPANPNGSPN 1237
>gnl|CDD|222184 pfam13507, GATase_5, CobB/CobQ-like glutamine amidotransferase
domain. This family captures members that are not found
in pfam00310, pfam07685 and pfam13230.
Length = 259
Score = 167 bits (426), Expect = 8e-47
Identities = 57/134 (42%), Positives = 77/134 (57%), Gaps = 10/134 (7%)
Query: 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALG 732
+A+LRE G N + EM+A + GF+ D+ + DLL +++LD F+GLV PGGFSY D LG
Sbjct: 4 VAILREPGTNCEYEMAAAFERAGFDAVDVHMSDLLSGRVSLDDFQGLVAPGGFSYGDVLG 63
Query: 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWFSVSTQARQPYIKSR 792
S KGWA S+L N ++ F R DTFS G+CNGCQ + LG P +
Sbjct: 64 SGKGWAKSILFNPKLRDAFEAFFNRRDTFSLGICNGCQALIKLGLI--------PGGEID 115
Query: 793 V--RCPPLKKEKSG 804
+ P L + SG
Sbjct: 116 LAEDWPTLTRNDSG 129
Score = 58.2 bits (142), Expect = 3e-09
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSP----GKRERKKKTGRYL 245
GRF F + + L+ + + RYVD++ T DYP NPNGSP G GR+L
Sbjct: 164 GRFVFPDEEVLKELEANGQVATRYVDNDGNPTMDYPFNPNGSPYGIAGICSP---DGRHL 220
Query: 246 GKYGH 250
G H
Sbjct: 221 GLMPH 225
>gnl|CDD|153211 cd01740, GATase1_FGAR_AT, Type 1 glutamine amidotransferase
(GATase1)-like domain found in Formylglycinamide
ribonucleotide amidotransferase. Type 1 glutamine
amidotransferase (GATase1)-like domain found in
Formylglycinamide ribonucleotide amidotransferase
(FGAR-AT). FGAR-AT catalyzes the ATP-dependent
conversion of formylglycinamide ribonucleotide (FGAR)
and glutamine to formylglycinamidine ribonucleotide
(FGAM), ADP, Pi, and glutamate in the fourth step of the
purine biosynthetic pathway. FGAR-AT is a glutamine
amidotransferase. Glutamine amidotransferase activity
catalyses the transfer of ammonia from the amide side
chain of glutamine to an acceptor substrate. FGAR-AT
belongs to the triad family of amidotransferases having
a conserved Cys-His-Glu catalytic triad in the
glutaminase active site.
Length = 238
Score = 146 bits (371), Expect = 9e-40
Identities = 43/106 (40%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALG 732
+AVLR G N DR+M+ ++ GFE D+ DLL + LD + G+V PGGFSY D L
Sbjct: 1 VAVLRFPGSNCDRDMAYAFELAGFEAEDVWHNDLLAGRKDLDDYDGVVLPGGFSYGDYLR 60
Query: 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778
+ AAS LL E + K A G+CNG Q++ LG
Sbjct: 61 AGAIAAASPLLMEEV-----KEFAERGGLVLGICNGFQILVELGLL 101
Score = 48.0 bits (115), Expect = 6e-06
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSP 232
GRF + + + + Q +YVDD+ +TE YP NPNGS
Sbjct: 152 GRFYADDETLAELEENGQI--AQYVDDDGNVTERYPANPNGSL 192
>gnl|CDD|234984 PRK01827, thyA, thymidylate synthase; Reviewed.
Length = 264
Score = 111 bits (280), Expect = 4e-27
Identities = 39/48 (81%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYVADGKLSCQLYQRSAD+ LGVPFNIASY+LLT+MIA TGL+
Sbjct: 148 ALFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHMIAQQTGLK 195
>gnl|CDD|215846 pfam00303, Thymidylat_synt, Thymidylate synthase.
Length = 262
Score = 109 bits (274), Expect = 2e-26
Identities = 39/49 (79%), Positives = 41/49 (83%)
Query: 305 TCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSCQLYQRS DM LGVPFNIASY+LLT MIA VTGL+
Sbjct: 145 HTLFQFYVRDGKLSCQLYQRSNDMFLGVPFNIASYALLTEMIAQVTGLE 193
>gnl|CDD|213790 TIGR03284, thym_sym, thymidylate synthase. Members of this protein
family are thymidylate synthase, an enzyme that produces
dTMP from dUMP. In prokaryotes, its gene usually is
found close to that for dihydrofolate reductase, and in
some systems the two enzymes are found as a fusion
protein. This model excludes a set of related proteins
(TIGR03283) that appears to replace this family in
archaeal methanogens, where tetrahydrofolate is replaced
by tetrahydromethanopterin [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism].
Length = 295
Score = 107 bits (268), Expect = 2e-25
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYVADGKLSCQLYQRSAD+ LGVPFNIASY+LLT++IA TGL+
Sbjct: 179 TLFQFYVADGKLSCQLYQRSADVFLGVPFNIASYALLTHLIAQETGLE 226
>gnl|CDD|240299 PTZ00164, PTZ00164, bifunctional dihydrofolate
reductase-thymidylate synthase; Provisional.
Length = 514
Score = 110 bits (278), Expect = 2e-25
Identities = 37/48 (77%), Positives = 42/48 (87%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L+QFYV DGKLSC +YQRS DMGLGVPFNIASY+LLT+MIA V GL+
Sbjct: 398 LLSQFYVNDGKLSCMMYQRSCDMGLGVPFNIASYALLTHMIAQVCGLR 445
>gnl|CDD|223285 COG0207, ThyA, Thymidylate synthase [Nucleotide transport and
metabolism].
Length = 268
Score = 98.1 bits (245), Expect = 1e-22
Identities = 36/48 (75%), Positives = 41/48 (85%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSC LYQRS D+ LGVPFNIASY+LLT+M+A VTGL+
Sbjct: 152 ILFQFYVRDGKLSCTLYQRSNDVFLGVPFNIASYALLTHMVAQVTGLE 199
>gnl|CDD|238211 cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine
hydroxymethylase: Thymidylate synthase (TS) and
deoxycytidylate hydroxymethylase (dCMP-HMase) are
homologs that catalyze analogous alkylation of C5 of
pyrimidine nucleotides. Both enzymes are involved in the
biosynthesis of DNA precursors and are active as
homodimers. However, they exhibit distinct pyrimidine
base specificities and differ in the details of their
catalyzed reactions. TS is biologically ubiquitous and
catalyzes the conversion of dUMP and
methylene-tetrahydrofolate (CH2THF) to dTMP and
dihydrofolate (DHF). It also acts as a regulator of its
own expression by binding and inactivating its own RNA.
Due to its key role in the de novo pathway for
thymidylate synthesis and, hence, DNA synthesis, it is
one of the most conserved enzymes across species and
phyla. TS is a well-recognized target for anticancer
chemotherapy, as well as a valuable new target against
infectious diseases. Interestingly, in several protozoa,
a single polypeptide chain codes for both, dihydrofolate
reductase (DHFR) and thymidylate synthase (TS), forming
a bifunctional enzyme (DHFR-TS), possibly through gene
fusion at a single evolutionary point. DHFR-TS is also
active as a dimer. Virus encoded dCMP-HMase catalyzes
the reversible conversion of dCMP and CH2THF to
hydroxymethyl-dCMP and THF. This family also includes
dUMP hydroxymethylase, which is encoded by several
bacteriophages that infect Bacillus subtilis, for their
own protection against the host restriction system, and
contain hydroxymethyl-dUMP instead of dTMP in their DNA.
Length = 215
Score = 96.6 bits (241), Expect = 1e-22
Identities = 35/49 (71%), Positives = 38/49 (77%)
Query: 305 TCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV +GKLS LYQRS D LGVPFNIASY+LLT MIA VTGL+
Sbjct: 145 HTLIQFYVRNGKLSLTLYQRSNDAFLGVPFNIASYALLTEMIARVTGLE 193
>gnl|CDD|223125 COG0047, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
glutamine amidotransferase domain [Nucleotide transport
and metabolism].
Length = 231
Score = 94.6 bits (236), Expect = 1e-21
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 10/104 (9%)
Query: 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALG 732
+AVLR G N D +M+A + GFE D+ DLL F G+V PGGFSY D L
Sbjct: 5 VAVLRFPGTNCDYDMAAAFERAGFEAEDVWHSDLLLG----RDFDGVVLPGGFSYGDYLR 60
Query: 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG 776
+ G A++ + ++ +F + G+CNG Q+++ G
Sbjct: 61 A--GAIAAI---APVMDEVREFAEK-GKPVLGICNGFQILSEAG 98
Score = 34.1 bits (79), Expect = 0.20
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPGKRER-KKKTGRYLGKY 248
GR+ + L+ + + RYVD+N + E NPNGS + G LG
Sbjct: 147 GRYYADD-ETLAELEENGQVVFRYVDNNGETEEYA--NPNGSVNGIAGITNEDGNVLGMM 203
Query: 249 GH 250
H
Sbjct: 204 PH 205
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 88.5 bits (220), Expect = 2e-20
Identities = 35/53 (66%), Positives = 39/53 (73%)
Query: 240 KTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
K G Y+ AV KGMP+K YHG+TGRVFNVT AVGVIVNKRVR RI+ K
Sbjct: 35 KVGDYVDIVVDSAVHKGMPYKYYHGRTGRVFNVTPRAVGVIVNKRVRGRIVRK 87
Score = 77.7 bits (192), Expect = 1e-16
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKC 401
M +S GYR GTR F++PFR+HG LS Y+ +KVGD VDI
Sbjct: 1 MPHSYGYRAGTRHKFAKPFRKHGVPSLSTYLTTFKVGDYVDIVV 44
>gnl|CDD|223058 PHA03366, PHA03366, FGAM-synthase; Provisional.
Length = 1304
Score = 87.0 bits (216), Expect = 2e-17
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 41/136 (30%)
Query: 77 LNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVV------------- 123
L ++ +VGSK ++ +DRC G +AQQ VGPL P++D ++V
Sbjct: 594 LLQILSHPTVGSKEYIVRHIDRCGNGRVAQQPGVGPLDLPVSDYSIVVHSSVKTRRAIET 653
Query: 124 ----------------------------ALVHNDLRGAATSIGEQPIKGLVDPKRGARMA 155
+++H + G +++GEQ K +DP GA+ A
Sbjct: 654 PSSTEDLTYQEADELINSPLTWFDPDDESVLHPAVPGTCSALGEQGYKVQLDPILGAKYA 713
Query: 156 VAEALTNLVFAKISDL 171
+ EALTNL+ A +++L
Sbjct: 714 IVEALTNLMLAPVANL 729
Score = 66.2 bits (162), Expect = 6e-11
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 12/124 (9%)
Query: 687 MSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEG 746
++A GF+ + +++++L + LD F GLV G D+ A+ A+LL N
Sbjct: 1046 LAAFTNA-GFDPYPVSIEELKDGT-FLDEFSGLVIGGSSGAEDSYTGARAAVAALLSNPA 1103
Query: 747 IKTQLNKFIARSDTFSFGVCN-GCQL---MNLLGWFSVSTQARQPYI--KSRVRCPPLKK 800
++ L +F+ R DTFS G GCQ+ + +G T L+
Sbjct: 1104 VRDALLRFLNRPDTFSLGCGELGCQILFALKAVGS----TAPSPVPGTETEEQWPITLEP 1159
Query: 801 EKSG 804
SG
Sbjct: 1160 NASG 1163
>gnl|CDD|233554 TIGR01739, tegu_FGAM_synt, herpesvirus tegument
protein/v-FGAM-synthase. This model describes a family
of large proteins of herpesvirues. The protein is
described variably as tegument protein or
phosphoribosylformylglycinamidine synthase
(FGAM-synthase). Most of the length of the protein shows
homology to eukaryotic FGAM-synthase. Functional
characterizations were not verified during construction
of this model.
Length = 1202
Score = 85.9 bits (213), Expect = 6e-17
Identities = 37/123 (30%), Positives = 54/123 (43%), Gaps = 36/123 (29%)
Query: 85 SVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVAL-----------VHNDL--- 130
+VGSK F+ +DRC G +AQQQ VGPL P++D ++V +++
Sbjct: 511 TVGSKEFIVRHIDRCGNGRVAQQQGVGPLDLPVSDYSLVLHNLSRPTDTTEVTYSENAMD 570
Query: 131 ----------------------RGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKI 168
+++GEQ K DPKRGA A+ EAL NL +
Sbjct: 571 LILDPDSWLYSWENEVLENPALSCVCSALGEQTYKVQADPKRGATYAITEALLNLSLSPW 630
Query: 169 SDL 171
+ L
Sbjct: 631 NTL 633
Score = 60.1 bits (146), Expect = 4e-09
Identities = 59/235 (25%), Positives = 82/235 (34%), Gaps = 29/235 (12%)
Query: 574 ISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQPVR 633
SV N+ + E L L W S E L E + Y
Sbjct: 855 FSVVHNSTVLFQEPLSLLQGTWRSFSDEENTLLCPNLEPREMH---------VLDYGYNE 905
Query: 634 DDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSAMAQV 693
D G G ++ + P +AVL G + + A
Sbjct: 906 MDFGGVPKGLPLSPLRFFTCPDPRH-------------QVAVLLLPGQSVPHGLLAALTN 952
Query: 694 CGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQLNK 753
GF+ +++ +L + LD F GL+ G D+ A+ AA+LL N+ L
Sbjct: 953 AGFDPRIVSITELKKTD-FLDTFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLT 1011
Query: 754 FIARSDTFSFGVCN-GCQLMNLLGWFSVSTQARQPYIKSRV---RCPPLKKEKSG 804
F+ R DTFS G GCQL LL V P+I P L+K SG
Sbjct: 1012 FLNRPDTFSLGFGELGCQL--LLALNIVGYTQSSPFITVPTEVQEPPRLEKNASG 1064
>gnl|CDD|110179 pfam01157, Ribosomal_L21e, Ribosomal protein L21e.
Length = 99
Score = 75.2 bits (185), Expect = 2e-16
Identities = 32/53 (60%), Positives = 39/53 (73%)
Query: 240 KTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
K G Y+ +G+VQKGMP K +HGKTGRV+NVT AVGV VNK+VR I+ K
Sbjct: 34 KVGDYVDIKINGSVQKGMPHKRFHGKTGRVYNVTPGAVGVAVNKKVRDGILEK 86
Score = 74.8 bits (184), Expect = 2e-16
Identities = 30/51 (58%), Positives = 34/51 (66%)
Query: 359 TNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRM 409
NS G RRGTR +F RPFR+HG PLS Y++ YKVGD VDIK S M
Sbjct: 1 PNSNGPRRGTRYMFKRPFRKHGLSPLSTYLREYKVGDYVDIKINGSVQKGM 51
>gnl|CDD|177784 PLN00190, PLN00190, 60S ribosomal protein L21; Provisional.
Length = 158
Score = 75.5 bits (186), Expect = 6e-16
Identities = 32/56 (57%), Positives = 39/56 (69%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
R K G Y+ +GA+ KGMP K YHG+TG V+NVT+ AVGV VNK+V RII K
Sbjct: 32 RTFKVGDYVDIKVNGAIHKGMPHKFYHGRTGIVWNVTKRAVGVEVNKQVGNRIIRK 87
Score = 70.5 bits (173), Expect = 4e-14
Identities = 26/52 (50%), Positives = 34/52 (65%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRM 409
M G R TRDLF+RPFR+ G IPL+ Y++ +KVGD VDIK + + M
Sbjct: 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTFKVGDYVDIKVNGAIHKGM 52
>gnl|CDD|100035 cd02204, PurL_repeat2, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), second
repeat. FGAR-AT catalyzes the ATP-dependent conversion
of formylglycinamide ribonucleotide (FGAR) and glutamine
to formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 264
Score = 72.2 bits (178), Expect = 8e-14
Identities = 23/54 (42%), Positives = 29/54 (53%)
Query: 119 DVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 172
D AV+ + +G A S GE P L+DP GA +AVAEA+ NLV L
Sbjct: 1 DAAVLRIPGETDKGLAMSTGENPRYSLLDPYAGAALAVAEAVRNLVAVGADPLA 54
>gnl|CDD|225050 COG2139, RPL21A, Ribosomal protein L21E [Translation, ribosomal
structure and biogenesis].
Length = 98
Score = 65.8 bits (161), Expect = 4e-13
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 359 TNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRM 409
S GYR TR + R G PLS Y++ YKVGD V I S + M
Sbjct: 1 KRSHGYRSRTRYKLQKDPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGM 51
Score = 50.0 bits (120), Expect = 1e-07
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 233 GKRERKK-KTGRYLGKYGHG---------AVQKGMPFKDYHGKTGRVFNVTQHAVGVIVN 282
RER RYL +Y G +V KGMP + GKTG V V A V V
Sbjct: 17 DPRERGLSPLSRYLQEYKVGDKVHIDIDPSVHKGMPHPRFQGKTGTVVGVRGRAYKVEVY 76
Query: 283 KRVRTRII 290
+ + +
Sbjct: 77 DGNKEKTL 84
>gnl|CDD|223124 COG0046, PurL, Phosphoribosylformylglycinamidine (FGAM) synthase,
synthetase domain [Nucleotide transport and metabolism].
Length = 743
Score = 70.3 bits (173), Expect = 3e-12
Identities = 37/118 (31%), Positives = 51/118 (43%), Gaps = 8/118 (6%)
Query: 57 RAPGFPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTP 116
P + +AL V+ +V SK +L + DR V G GP+
Sbjct: 393 PKKEEAGDVPEPEEPDLEEALLKVLSSPNVASKEWLYEQYDRSVGGNTVVDP--GPV--- 447
Query: 117 LADVAVVAL--VHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 172
AD AV+ + +G A + GE P L+DP GA++AVAEAL NL L
Sbjct: 448 -ADAAVLRISEDSGTGKGLAMTTGENPRYALLDPYAGAKLAVAEALRNLAATGAKPLA 504
Score = 38.8 bits (91), Expect = 0.013
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 524 RHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFKIS 575
+ L+ DE+D I L R PT E AQ SEH + K S
Sbjct: 19 ELGLALSDDEYDY-----IREFLLGREPTDTELGMFAQMWSEHCSY---KSS 62
>gnl|CDD|235275 PRK04306, PRK04306, 50S ribosomal protein L21e; Reviewed.
Length = 98
Score = 54.4 bits (132), Expect = 3e-09
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRM 409
M S G+R TR S+ R G PLS ++ ++ GD V I S + M
Sbjct: 2 MKKSHGFRSKTRKKLSKSPRERGLSPLSRALQEFEEGDKVHIVIDPSVHKGM 53
Score = 35.6 bits (83), Expect = 0.014
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 252 AVQKGMPFKDYHGKTGRV 269
+V KGMP +HGKTG V
Sbjct: 48 SVHKGMPHPRFHGKTGTV 65
>gnl|CDD|234913 PRK01175, PRK01175, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 261
Score = 53.2 bits (128), Expect = 2e-07
Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 668 KKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSY 727
+ I +AVLR EG N + E + G E + + DL + ++ + LV PGGFS
Sbjct: 1 MESIRVAVLRMEGTNCEDETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGFSA 60
Query: 728 ADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778
D + + +AA L ++ + +FI G+CNG Q++ LG
Sbjct: 61 GDYIRAGAIFAARLK--AVLRKDIEEFI-DEGYPIIGICNGFQVLVELGLL 108
Score = 35.9 bits (83), Expect = 0.061
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGS 231
GR F I + L + + RYVD N YP NPNGS
Sbjct: 164 GRVVFSEEEILERLIENDQIVFRYVD-ENGNYAGYPWNPNGS 204
>gnl|CDD|130916 TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase,
clade II. This model represents a single-molecule form
of phosphoribosylformylglycinamidine synthase, also
called FGAM synthase, an enzyme of purine de novo
biosynthesis. This model represents a second clade of
these enzymes found in Clostridia, Bifidobacteria and
Streptococcus species. This enzyme performs the fourth
step in IMP biosynthesis (the precursor of all purines)
from PRPP [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 1239
Score = 52.9 bits (127), Expect = 8e-07
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 14/125 (11%)
Query: 662 VGATLGKKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKIT--------- 712
+ K + I V G N + + + + G EV + ++L E +
Sbjct: 971 AKEKVEKPRVVIPVF--PGTNSEYDSAKAFEKEGAEVNLVIFRNLNEEALVESVETMVDE 1028
Query: 713 LDRFKGLVFPGGFSYADAL-GSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQL 771
+D+ + L+ PGGFS D GSAK + A++L N ++ ++ F+AR D G+CNG Q
Sbjct: 1029 IDKSQILMLPGGFSAGDEPDGSAK-FIAAILRNPKVRVAIDSFLAR-DGLILGICNGFQA 1086
Query: 772 MNLLG 776
+ G
Sbjct: 1087 LVKSG 1091
Score = 36.0 bits (83), Expect = 0.095
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 212 RYVDDNNKITEDYPMNPNGSPGKRER-KKKTGRYLGKYGH 250
+YVD N K + D NPNGS E GR GK GH
Sbjct: 1172 QYVDFNGKPSMDSKYNPNGSSLAIEGITSPDGRIFGKMGH 1211
>gnl|CDD|233552 TIGR01736, FGAM_synth_II, phosphoribosylformylglycinamidine
synthase II. Phosphoribosylformylglycinamidine synthase
is a single, long polypeptide in most Proteobacteria and
eukarotes. Three proteins are required in Bacillus
subtilis and many other species. This is the longest of
the three and is designated PurL,
phosphoribosylformylglycinamidine synthase II, or FGAM
synthase II [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 715
Score = 50.8 bits (122), Expect = 2e-06
Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 9/109 (8%)
Query: 57 RAPGFPTTAHTP-PNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHT 115
P +P P P + A V+ ++ SK ++ + D V
Sbjct: 364 EPPKYPEEEKEPEPPADLEDAFLKVLSSPNIASKEWVYRQYDHEVQTRTVV--------K 415
Query: 116 PLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLV 164
P D AV+ + G A + P +DP GA AVAEA NL
Sbjct: 416 PGEDAAVLRIKETGKLGLALTADCNPRYVYLDPYAGAAGAVAEAYRNLA 464
>gnl|CDD|153210 cd01653, GATase1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group includes proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4
beta-galactosidase middle domain. The majority of
proteins in this group have a reactive Cys found in the
sharp turn between a beta strand and an alpha helix
termed the nucleophile elbow. For Class I glutamine
amidotransferases proteins which transfer ammonia from
the amide side chain of glutamine to an acceptor
substrate, this Cys forms a Cys-His-Glu catalytic triad
in the active site. Glutamine amidotransferases
activity can be found in a range of biosynthetic enzymes
included in this cd: glutamine amidotransferase,
formylglycinamide ribonucleotide, GMP synthetase,
anthranilate synthase component II, glutamine-dependent
carbamoyl phosphate synthase, cytidine triphosphate
synthetase, gamma-glutamyl hydrolase, imidazole glycerol
phosphate synthase and, cobyric acid synthase. For
Pyrococcus horikoshii PH1704, the Cys of the nucleophile
elbow together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. The E. coli HP-II C-terminal
domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Length = 115
Score = 45.7 bits (108), Expect = 6e-06
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 673 IAVLREEGINGDREMSAMAQV--CGFEVWDITVQ-DLLENKITLDRFKGLVFPGGFSYAD 729
+AVL G S + + G EV ++ +E+ + LD + GL+ PGG D
Sbjct: 1 VAVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
L +E + L + A G+C G QL+
Sbjct: 61 D----------LARDEALLALLREAAAA-GKPILGICLGAQLL 92
>gnl|CDD|153222 cd03128, GAT_1, Type 1 glutamine amidotransferase (GATase1)-like
domain. Type 1 glutamine amidotransferase
(GATase1)-like domain. This group contains proteins
similar to Class I glutamine amidotransferases, the
intracellular PH1704 from Pyrococcus horikoshii, the
C-terminal of the large catalase: Escherichia coli
HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4
beta-galactosidase middle domain and peptidase E. The
majority of proteins in this group have a reactive Cys
found in the sharp turn between a beta strand and an
alpha helix termed the nucleophile elbow. For Class I
glutamine amidotransferases proteins which transfer
ammonia from the amide side chain of glutamine to an
acceptor substrate, this Cys forms a Cys-His-Glu
catalytic triad in the active site. Glutamine
amidotransferases activity can be found in a range of
biosynthetic enzymes included in this cd: glutamine
amidotransferase, formylglycinamide ribonucleotide, GMP
synthetase, anthranilate synthase component II,
glutamine-dependent carbamoyl phosphate synthase
(CPSase), cytidine triphosphate synthetase,
gamma-glutamyl hydrolase, imidazole glycerol phosphate
synthase and, cobyric acid synthase. For Pyrococcus
horikoshii PH1704, the Cys of the nucleophile elbow
together with a different His and, a Glu from an
adjacent monomer form a catalytic triad different from
the typical GATase1 triad. Peptidase E is believed to be
a serine peptidase having a Ser-His-Glu catalytic triad
which differs from the Cys-His-Glu catalytic triad of
typical GATase1 domains, by having a Ser in place of the
reactive Cys at the nucleophile elbow. The E. coli HP-II
C-terminal domain, S. meliloti Rm1021 ThuA and the A4
beta-galactosidase middle domain lack the catalytic
triad typical GATaseI domains. GATase1-like domains can
occur either as single polypeptides, as in Class I
glutamine amidotransferases, or as domains in a much
larger multifunctional synthase protein, such as CPSase.
Peptidase E has a circular permutation in the common
core of a typical GTAse1 domain.
Length = 92
Score = 44.1 bits (104), Expect = 1e-05
Identities = 26/103 (25%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 673 IAVLREEGINGDREMSAMAQV--CGFEVWDITVQ-DLLENKITLDRFKGLVFPGGFSYAD 729
+AVL G S + + G EV ++ +E+ + LD + GL+ PGG D
Sbjct: 1 VAVLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPD 60
Query: 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
L +E + L + A G+C G QL+
Sbjct: 61 D----------LAWDEALLALLREAAAA-GKPVLGICLGAQLL 92
>gnl|CDD|233553 TIGR01737, FGAM_synth_I, phosphoribosylformylglycinamidine synthase
I. In some species, phosphoribosylformylglycinamidine
synthase is composed of a single polypeptide chain. This
model describes the PurQ protein of Bacillus subtilis
(where PurL, PurQ, and PurS are required for
phosphoribosylformylglycinamidine synthase activity) and
functionally equivalent proteins from other bacteria and
archaea [Purines, pyrimidines, nucleosides, and
nucleotides, Purine ribonucleotide biosynthesis].
Length = 227
Score = 47.0 bits (112), Expect = 1e-05
Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 17/109 (15%)
Query: 671 ISIAVLREEGINGDREMSAMAQVCGFE---VWDITVQDLLENKITLDRFKGLVFPGGFSY 727
+ +AV+R G N DR+ ++ G + VW +L + G+V PGGFSY
Sbjct: 1 MKVAVIRFPGTNCDRDTVYALRLLGVDAEIVW--------YEDGSLPDYDGVVLPGGFSY 52
Query: 728 ADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLG 776
D L + AAS ++ E + +F + G+CNG Q++ G
Sbjct: 53 GDYLRAGAIAAASPIMQE-----VREFAEKG-VPVLGICNGFQILVEAG 95
>gnl|CDD|100034 cd02203, PurL_repeat1, PurL subunit of the formylglycinamide
ribonucleotide amidotransferase (FGAR-AT), first repeat.
FGAR-AT catalyzes the ATP-dependent conversion of
formylglycinamide ribonucleotide (FGAR) and glutamine to
formylglycinamidine ribonucleotide (FGAM), ADP,
phosphate, and glutamate in the fourth step of the
purine biosynthetic pathway. In eukaryotes and
Gram-negative bacteria, FGAR-AT is encoded by the purL
gene as a multidomain protein with a molecular mass of
about 140 kDa. In Gram-positive bacteria and archaea
FGAR-AT is a complex of three proteins: PurS, PurL, and
PurQ. PurL itself contains two tandem N- and C-terminal
domains (four domains altogether). The N-terminal
domains bind ATP and are related to the ATP-binding
domains of HypE, ThiL, SelD and PurM.
Length = 313
Score = 42.5 bits (101), Expect = 6e-04
Identities = 10/20 (50%), Positives = 10/20 (50%)
Query: 555 ECFDLAQSNSEHSRHWFFKI 574
E AQ SEH RH FK
Sbjct: 1 ELGMFAQMWSEHCRHKSFKS 20
>gnl|CDD|235140 PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase I;
Provisional.
Length = 219
Score = 41.3 bits (98), Expect = 0.001
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%)
Query: 673 IAVLREEGINGDREMS-AMAQVCGFE---VWDITVQDLLENKITLDRFKGLVFPGGFSYA 728
+AV+ G N DR+M+ A+ + G E VW + LD +V PGGFSY
Sbjct: 3 VAVIVFPGSNCDRDMARALRDLLGAEPEYVWH--------KETDLDGVDAVVLPGGFSYG 54
Query: 729 DAL 731
D L
Sbjct: 55 DYL 57
>gnl|CDD|234921 PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase II;
Provisional.
Length = 724
Score = 40.1 bits (95), Expect = 0.005
Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 9/98 (9%)
Query: 67 TPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALV 126
+ +AL ++ ++ SK ++ + D V P D AV+ +
Sbjct: 385 QADPEDLKEALLKLLSSPNIASKEWVYEQYDHEVQTNTVV--------KPGGDAAVLR-I 435
Query: 127 HNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLV 164
+G A + P +DP GA++AVAEA NL
Sbjct: 436 RGGGKGLALTTDCNPRYVYLDPYEGAKLAVAEAARNLA 473
>gnl|CDD|184347 PRK13821, thyA, thymidylate synthase; Provisional.
Length = 323
Score = 39.7 bits (93), Expect = 0.005
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 307 LAQFY--VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTG 351
L QF V ++S LY RS D+GLG PFN+ + L ++ +TG
Sbjct: 195 LYQFLPNVETREISLCLYIRSNDVGLGTPFNLTEGAALLSLVGRLTG 241
>gnl|CDD|236329 PRK08664, PRK08664, aspartate-semialdehyde dehydrogenase; Reviewed.
Length = 349
Score = 32.5 bits (75), Expect = 0.84
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 110 VGPL-HTPLADVAVVALVHNDLRGAA 134
VG L + D+ V L HN +RGAA
Sbjct: 308 VGRLREDGIFDIKFVVLGHNTVRGAA 333
>gnl|CDD|213612 TIGR01383, not_thiJ, DJ-1 family protein. This model represents
the DJ-1 clade of the so-called ThiJ/PfpI family of
proteins. PfpI, represented by a distinct model, is a
putative intracellular cysteine protease. DJ-1 is
described as an oncogene that acts cooperatively with
H-Ras. Many members of the DJ-1 clade are annotated
(apparently incorrectly) as ThiJ, a protein of thiamine
biosynthesis. However, published reports of ThiJ
activity and identification of a ThiJ/ThiD bifunctional
protein describe an unrelated locus mapping near ThiM,
rather than the DJ-1 homolog of E. coli. The ThiJ
designation for this family may be spurious; the cited
paper PMID:8885414 refers to a locus near thiD and thiM
in E. coli, unlike the gene represented here. Current
public annotation reflects ThiJ/ThiD bifunctional
activity, apparently a property of ThiD and not of this
locus [Unknown function, General].
Length = 179
Score = 30.7 bits (70), Expect = 2.1
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 14/93 (15%)
Query: 670 VISIAVLREEGINGDREMSAMA---QV-CGFEVWDITVQDLLENKITLDRFKGLVFPGGF 725
VI++ VLR GI ++ + V V I LE+ + L++F +V PGG
Sbjct: 16 VITVDVLRRAGIKVTVAIAGLNGKLAVKGSRGVK-ILADASLED-VDLEKFDVIVLPGGM 73
Query: 726 SYADALGSAKGWAASLLLNEGIKTQL--NKFIA 756
A+ L + S LL +K+Q K +A
Sbjct: 74 PGAENLRN------SKLLLNILKSQESKGKLVA 100
>gnl|CDD|168296 PRK05926, PRK05926, hypothetical protein; Provisional.
Length = 370
Score = 31.4 bits (71), Expect = 2.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 514 VQRTKLCIVQRHEVGLAFDEWDLEYYTDIFRNKLKRN 550
++ I + H V F +L YY ++F K+K+N
Sbjct: 108 IKENPSPITETHIVAGCFPSCNLAYYEELFS-KIKQN 143
>gnl|CDD|153438 cd07969, OBF_DNA_ligase_I, The Oligonucleotide/oligosaccharide
binding (OB)-fold domain of ATP-dependent DNA ligase I
is a DNA-binding module that is part of the catalytic
core unit. ATP-dependent polynucleotide ligases
catalyze phosphodiester bond formation using nicked
nucleic acid substrates with the high energy nucleotide
of ATP as a cofactor in a three step reaction mechanism.
DNA ligases play a vital role in the diverse processes
of DNA replication, recombination and repair.
ATP-dependent ligases are present in many organisms such
as viruses, bacteriohages, eukarya, archaea and
bacteria. There are three classes of ATP-dependent DNA
ligases in eukaryotic cells (I, III and IV). This group
is composed of eukaryotic DNA ligase I, Sulfolobus
solfataricus DNA ligase and similar proteins. DNA ligase
I is required for the ligation of Okazaki fragments
during lagging-strand DNA synthesis and for base
excision repair (BER). ATP dependent DNA ligases have a
highly modular architecture consisting of a unique
arrangement of two or more discrete domains including a
DNA-binding domain, an adenylation
(nucleotidyltransferase (NTase)) domain, and an
oligonucleotide/oligosaccharide binding (OB)-fold
domain. The adenylation and C-terminal OB-fold domains
comprise a catalytic core unit that is common to most
members of the ATP-dependent DNA ligase family. The
catalytic core unit contains six conserved sequence
motifs (I, III, IIIa, IV, V and VI) that define this
family of related nucleotidyltransferases. The OB-fold
domain contacts the nicked DNA substrate and is required
for the ATP-dependent DNA ligase nucleotidylation step.
The RxDK motif (motif VI), which is essential for ATP
hydrolysis, is located in the OB-fold domain.
Length = 144
Score = 29.0 bits (66), Expect = 5.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 403 ESFYDRMTECVYSSPLTSFNHGIKPDPWFY 432
E Y+ + E V + ++PD WF
Sbjct: 53 EELYESLKEHVIPKKPYRVDSSLEPDVWFE 82
Score = 29.0 bits (66), Expect = 5.8
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 455 ESFYDRMTECVYSSPLTSFNHGIKPDPWFY 484
E Y+ + E V + ++PD WF
Sbjct: 53 EELYESLKEHVIPKKPYRVDSSLEPDVWFE 82
>gnl|CDD|223592 COG0518, GuaA, GMP synthase - Glutamine amidotransferase domain
[Nucleotide transport and metabolism].
Length = 198
Score = 29.1 bits (66), Expect = 8.4
Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 15/79 (18%)
Query: 701 ITVQDLLENKITLDRFKGLVFPGG--FSYADALGSAKGWAASLLLNEGIKTQLNKFIARS 758
I ++ LD G++ GG Y + L+ + G+ K +
Sbjct: 31 IVPYTGDAEELPLDSPDGIIISGGPMSVYDEDPWL--PREKDLIKDAGVP---GKPV--- 82
Query: 759 DTFSFGVCNGCQLM-NLLG 776
G+C G QL+ LG
Sbjct: 83 ----LGICLGHQLLAKALG 97
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0862 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 44,426,556
Number of extensions: 4359080
Number of successful extensions: 3288
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3261
Number of HSP's successfully gapped: 65
Length of query: 875
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 770
Effective length of database: 6,280,432
Effective search space: 4835932640
Effective search space used: 4835932640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (27.8 bits)