RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5570
(875 letters)
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase,
glutaminase, thioester intermediate, ligas; HET: ADP;
1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A*
3umm_A*
Length = 1303
Score = 193 bits (492), Expect = 7e-51
Identities = 63/206 (30%), Positives = 98/206 (47%), Gaps = 21/206 (10%)
Query: 572 FKISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQP 631
+ + N++ V +E TL + W T++++++L+ N +CAD+E+ + P
Sbjct: 970 DRFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNV-- 1027
Query: 632 VRDDIVGATLGKKVTRIGPKYQYQPVRDDIVGATLGKKVISIAVLREEGINGDREMSAMA 691
K + D +AVLRE+G+N EM+A
Sbjct: 1028 -------------------KLSFDINEDIAAPYIATGARPKVAVLREQGVNSHVEMAAAF 1068
Query: 692 QVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQL 751
GF+ D+ + DLL +I L F LV GGFSY D LG+ +GWA S+L N ++ +
Sbjct: 1069 HRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEF 1128
Query: 752 NKFIARSDTFSFGVCNGCQLMNLLGW 777
F R T + GVCNGCQ+M+ L
Sbjct: 1129 ETFFHRPQTLALGVCNGCQMMSNLRE 1154
Score = 125 bits (315), Expect = 2e-29
Identities = 41/133 (30%), Positives = 60/133 (45%), Gaps = 28/133 (21%)
Query: 452 QCAESFYDRMTECVYSSP--LTSFNHGIKPDPWFYVDVMGKGKVALQEVNQKLGQIGLLF 509
Q A +DRM E V+SS +P P VD++G+G+ AL + N +LG
Sbjct: 134 QVAAELHDRMMETVFSSLTDAEKLFIHHQPAPVSSVDLLGEGRQALIDANLRLG------ 187
Query: 510 IYFIVQRTKLCIVQRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRH 569
LA E +++Y + F KL RNP +E + AQ+NSEH RH
Sbjct: 188 -------------------LALAEDEIDYLQEAF-TKLGRNPNDIELYMFAQANSEHCRH 227
Query: 570 WFFKISVAVNNEP 582
F ++ +P
Sbjct: 228 KIFNADWIIDGKP 240
Score = 119 bits (300), Expect = 1e-27
Identities = 44/112 (39%), Positives = 61/112 (54%)
Query: 61 FPTTAHTPPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADV 120
A +I++ A+ V+ L +V K FL DR VTG++A+ Q VGP P+AD
Sbjct: 629 AKGDALNRADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADC 688
Query: 121 AVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLK 172
AV + G A SIGE+ L+D AR+AV EALTN+ +I D+K
Sbjct: 689 AVTTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIK 740
Score = 63.5 bits (154), Expect = 3e-10
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 190 GRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSP-GKRERKKKTGRYLGKY 248
GR ++ L+ + +RYVD+ K+TE YP NPNGSP G + GR
Sbjct: 1207 GRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMM 1266
Query: 249 GH 250
H
Sbjct: 1267 PH 1268
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase,
nucleotide biosynthesis; 1.56A {Homo sapiens} PDB:
3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A
3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 2rd8_A* 2rda_A
3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* 1juj_A* 3egy_X* ...
Length = 295
Score = 126 bits (319), Expect = 2e-32
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 179 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 226
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode,
methyltransferase, nucleotide biosynt transferase,
structural genomics; 2.20A {Encephalitozoon cuniculi}
Length = 294
Score = 125 bits (317), Expect = 4e-32
Identities = 37/48 (77%), Positives = 41/48 (85%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QF V DGKLSC +YQRS DMGLGVPFNIASYSLLT ++AH+TGLQ
Sbjct: 176 VLFQFNVTDGKLSCAMYQRSGDMGLGVPFNIASYSLLTILVAHLTGLQ 223
>1j3k_C Bifunctional dihydrofolate reductase-thymidylate synthase;
oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A
{Plasmodium falciparum} SCOP: d.117.1.1 PDB: 1j3i_C*
1j3j_C* 3dg8_C* 3dga_C*
Length = 328
Score = 126 bits (319), Expect = 4e-32
Identities = 35/48 (72%), Positives = 39/48 (81%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 212 ILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 259
>1hw4_A TS, thymidylate synthase; methyltransferase, transferase; HET: CME;
2.06A {Homo sapiens} SCOP: d.117.1.1 PDB: 3n5e_A 3n5g_A*
Length = 355
Score = 126 bits (318), Expect = 1e-31
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 239 ALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 286
>1bkp_A Thymidylate synthase A; methyltransferase, DTMP synthase; 1.70A
{Bacillus subtilis} SCOP: d.117.1.1 PDB: 1bko_A 1bsf_A
1bsp_A 1b02_A*
Length = 278
Score = 121 bits (307), Expect = 7e-31
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
Q+YV GKL ++ RS DM LG PFN+ Y++L MIA VTG +
Sbjct: 162 YETQWYVKHGKLHLEVRARSNDMALGNPFNVFQYNVLQRMIAQVTGYE 209
>1tis_A Thymidylate synthase; transferase(methyltransferase); 2.70A
{Enterobacteria phage T4} SCOP: d.117.1.1
Length = 286
Score = 121 bits (306), Expect = 9e-31
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QF V +G L Q YQRS D+ LG+PFNIASY+ L +++A + L
Sbjct: 158 MFYQFNVRNGYLDLQWYQRSVDVFLGLPFNIASYATLVHIVAKMCNLI 205
>2g8o_A TS, tsase, thymidylate synthase; methyltransferase, DUMP,
antifolate, high-resolution, ternar complex, beta sheet,
alpha/beta protein; HET: CXM UMP CB3; 1.30A {Escherichia
coli} SCOP: d.117.1.1 PDB: 1aob_A* 1f4c_A* 1f4e_A*
1f4f_A* 1jtq_A* 1jtu_A* 1jut_A* 1kce_A* 1kzi_A* 1tls_A*
1tsn_A* 1f4b_A* 2bbq_A* 2ftq_A* 2a9w_A* 2kce_A* 3b9h_A*
3bhl_A* 3bhr_A* 3tms_A ...
Length = 264
Score = 120 bits (304), Expect = 1e-30
Identities = 32/48 (66%), Positives = 38/48 (79%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADGKLSCQLYQRS D+ LG+PFNIASY+LL +M+A L+
Sbjct: 148 AFFQFYVADGKLSCQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLE 195
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural
genomics, TB structural GEN consortium, TBSGC,
transferase; HET: UMP SPM; 2.50A {Mycobacterium
tuberculosis}
Length = 264
Score = 120 bits (304), Expect = 1e-30
Identities = 35/48 (72%), Positives = 40/48 (83%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYVADG+LSCQLYQRSAD+ LGVPFNIASY+LLT+M+A GL
Sbjct: 149 AFFQFYVADGRLSCQLYQRSADLFLGVPFNIASYALLTHMMAAQAGLS 196
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A
{Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 125 bits (315), Expect = 3e-30
Identities = 33/48 (68%), Positives = 39/48 (81%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
C QFYV+D KLSC ++QRS D+GLGVPFNIASYS+LT M+A V GL
Sbjct: 399 CFFQFYVSDNKLSCMMHQRSCDLGLGVPFNIASYSILTAMVAQVCGLG 446
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 124 bits (314), Expect = 3e-30
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
LAQFYV++G+LSC LYQRS DMGLGVPFNIASY+LLT +IA TGL+
Sbjct: 405 LLAQFYVSNGELSCMLYQRSCDMGLGVPFNIASYALLTILIAKATGLR 452
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 125 bits (316), Expect = 4e-30
Identities = 35/48 (72%), Positives = 39/48 (81%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLSC +YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 492 ILCQFYVFDGKLSCIMYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQ 539
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural
center for infectious DISE brucellosis, orchitis,
epididymitis, mastitis; 2.20A {Brucella melitensis}
Length = 360
Score = 121 bits (306), Expect = 4e-30
Identities = 39/48 (81%), Positives = 44/48 (91%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
CL QFYVA+G+LSCQLYQRSAD+ LGVPFNIASY+LLT MIA VTGL+
Sbjct: 244 CLFQFYVANGRLSCQLYQRSADIFLGVPFNIASYALLTMMIAQVTGLK 291
>1f28_A Thymidylate synthase; beta-sheet, protein-inhibitor complex,
transferase; HET: UMP F89; 1.90A {Pneumocystis carinii}
SCOP: d.117.1.1 PDB: 1ci7_A*
Length = 297
Score = 119 bits (301), Expect = 6e-30
Identities = 35/54 (64%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 306 CLAQFYVA------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QFYV +LSCQLYQRS DMGLGVPFNIASY+LLT MIAHV L
Sbjct: 175 MFCQFYVHIPSNNHRPELSCQLYQRSCDMGLGVPFNIASYALLTCMIAHVCDLD 228
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG; HET: UMP;
2.71A {Staphylococcus aureus}
Length = 321
Score = 120 bits (302), Expect = 7e-30
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
+ QFYV DGKLSCQLYQRSAD+ LGVPFNIASY+LLT++IA GL+
Sbjct: 206 TMFQFYVQDGKLSCQLYQRSADIFLGVPFNIASYALLTHLIAKECGLE 253
>3ik0_A TS, tsase, thymidylate synthase; transferase, nucleotide synthase,
methyltransferase, nucleot biosynthesis; HET: 7C1 UMP;
2.10A {Lactobacillus casei} PDB: 1lcb_A* 1lce_A* 1lca_A*
1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A*
3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A*
1tsz_A 1tdb_A* 1tda_A* ...
Length = 316
Score = 119 bits (301), Expect = 8e-30
Identities = 35/48 (72%), Positives = 41/48 (85%)
Query: 306 CLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH GL+
Sbjct: 200 TLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHECGLE 247
>2aaz_A TS, tsase, thymidylate synthase; methyl transferase, nucleotide
biosynthesis, transferase; HET: UMP CB3; 2.08A
{Filobasidiella neoformans}
Length = 317
Score = 119 bits (300), Expect = 1e-29
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 9/57 (15%)
Query: 306 CLAQFYVA---------DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
QF+V+ KLSC +YQRS D+GLGVPFNIASY+LLT+MIA +T +
Sbjct: 189 MFCQFFVSLPPADSPGSKPKLSCLMYQRSCDLGLGVPFNIASYALLTHMIALITDTE 245
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover,
non-active site, oxidoreductase; HET: UMP CB3 MTX NDP;
2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A*
3dl5_A* 3dl6_A* 2oip_A*
Length = 521
Score = 119 bits (301), Expect = 2e-28
Identities = 30/49 (61%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Query: 306 CLAQFYVA-DGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L+Q+YV D LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 404 VLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 452
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing
complex, transferase; HET: DCM; 1.60A {Enterobacteria
phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Length = 246
Score = 109 bits (275), Expect = 5e-27
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 305 TCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQRT 355
T Q+ + D K++ + RS D+ G + A + + +
Sbjct: 149 TNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAGDS 199
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics,
seattle S genomics center for infectious disease,
transferase; HET: CIT; 1.65A {Burkholderia
thailandensis}
Length = 327
Score = 110 bits (278), Expect = 1e-26
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 306 CLAQFY--VADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QF V ++S LY RS D+GLG PFN+A + L ++ +TG
Sbjct: 198 LLYQFLPNVERREISLCLYIRSNDVGLGTPFNLAEGAALLTLVGRLTGYS 247
>1vq8_Q 50S ribosomal protein L21E; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_Q*
1vq5_Q* 1vq6_Q* 1vq7_Q* 1s72_Q* 1vq9_Q* 1vqk_Q* 1vql_Q*
1vqm_Q* 1vqn_Q* 1vqo_Q* 1vqp_Q* 1yhq_Q* 1yi2_Q* 1yij_Q*
1yit_Q* 1yj9_Q* 1yjn_Q* 1yjw_Q* 2otj_Q* ...
Length = 96
Score = 85.0 bits (211), Expect = 4e-20
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRM 409
M +S G GTR R GT P ++ + G+ V +K S +
Sbjct: 1 MPSSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGR 52
Score = 65.8 bits (161), Expect = 2e-13
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 10/68 (14%)
Query: 233 GKRERKK-KTGRYLGKY---------GHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVN 282
R+R R + ++ +V G + G+TG V A V +
Sbjct: 18 KPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIV 77
Query: 283 KRVRTRII 290
+ + I
Sbjct: 78 DGGKEKTI 85
>3izc_U 60S ribosomal protein RPL21 (L21E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_U
3o58_T 3o5h_T 3u5e_T 3u5i_T
Length = 160
Score = 86.6 bits (214), Expect = 7e-20
Identities = 31/57 (54%), Positives = 35/57 (61%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
M S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK S M Y
Sbjct: 1 MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFY 57
Score = 63.8 bits (155), Expect = 5e-12
Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 10/70 (14%)
Query: 233 GKRERKK-KTGRYLGKY---------GHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVN 282
R+ YL Y +G++QKGMP K Y GKTG V+NVT+ +VGVI+N
Sbjct: 18 DFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIIN 77
Query: 283 KRVRTRIIPK 292
K V R + K
Sbjct: 78 KMVGNRYLEK 87
>3iz5_U 60S ribosomal protein L21 (L21E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_U
Length = 164
Score = 84.7 bits (209), Expect = 4e-19
Identities = 26/57 (45%), Positives = 35/57 (61%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
M G R TRDLF+RPFR+ G IPL+ Y++ YKVG+ VD+K + + M Y
Sbjct: 1 MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKVGEHVDVKVNGAVHKGMPHKFY 57
Score = 58.9 bits (142), Expect = 3e-10
Identities = 31/56 (55%), Positives = 40/56 (71%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
R K G ++ +GAV KGMP K YHG+TGRV+NVT+ A+GV +NK+V RII K
Sbjct: 32 RTYKVGEHVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKK 87
>4a17_P RPL21, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_P 4a1c_P 4a1e_P
Length = 157
Score = 83.5 bits (206), Expect = 6e-19
Identities = 23/57 (40%), Positives = 34/57 (59%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
MT+S GYRR TR F++ ++ G + +S Y+ YKVG+ VDI S + M +Y
Sbjct: 1 MTHSYGYRRQTRKKFAKAYKTKGHVRISRYLTTYKVGEYVDIMVDGSQHKGMPYKLY 57
Score = 65.0 bits (158), Expect = 2e-12
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
K G Y+ G+ KGMP+K YHG+TG+VFNV ++GVIV++ V R I K
Sbjct: 32 TTYKVGEYVDIMVDGSQHKGMPYKLYHGRTGKVFNVNPRSIGVIVHRIVNGRYIEK 87
>2zkr_q 60S ribosomal protein L21; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 160
Score = 83.1 bits (205), Expect = 1e-18
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 358 MTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
MTN+KG RRGTR +FSRPFR+HG +PL+ YM++YK GDIVDIK + M Y
Sbjct: 1 MTNTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCY 57
Score = 66.9 bits (163), Expect = 4e-13
Identities = 35/56 (62%), Positives = 42/56 (75%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
R K G + G G VQKGMP K YHGKTGRV+NVTQHAVG+IVNK+V+ +I+ K
Sbjct: 32 RIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIIVNKQVKGKILAK 87
>3jyw_Q 60S ribosomal protein L21(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus} PDB:
1s1i_Q
Length = 116
Score = 76.5 bits (188), Expect = 6e-17
Identities = 30/54 (55%), Positives = 34/54 (62%)
Query: 361 SKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
S GYR TR +F R FR+HG + LS Y+KVYKVGDIVDIK S M Y
Sbjct: 3 SHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFY 56
Score = 63.8 bits (155), Expect = 2e-12
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPK 292
+ K G + +G++QKGMP K Y GKTG V+NVT+ +VGVI+NK V R + K
Sbjct: 31 KVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEK 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 1e-11
Identities = 65/411 (15%), Positives = 136/411 (33%), Gaps = 121/411 (29%)
Query: 523 QRHEVGLAFDEWDLEY-YTDI---FRNKLKRNPTSVECFDLAQSNSEHSRHWFFKISV-A 577
H + F+ + +Y Y DI F + N +C D+ + + K +
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDN---FDCKDV----QDMPKSILSKEEIDH 53
Query: 578 VNNEPVLNEDLGTLFLIW------ERTSYEL--EKLQMNARCADEEYNSLVTRIGPKYQ- 628
+ + GTL L W E + E L++N Y L++ I + +
Sbjct: 54 IIMSK--DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN-------YKFLMSPIKTEQRQ 104
Query: 629 -------YQPVRDDI--VGATLGKK-VTRIGPK-------YQYQPVRDDIV----GATLG 667
Y RD + K V+R+ P + +P ++ ++ G+ G
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--G 162
Query: 668 KKVISIAVLREEGINGDREMSAMAQVCGFEV-WDITV------QDLLENKITLDRFKGLV 720
K +++ V + +M F++ W + + + +LE L + +
Sbjct: 163 KTWVALDVCLSYKV--QCKM-------DFKIFW-LNLKNCNSPETVLEM---LQKLLYQI 209
Query: 721 FPGGFSYADA-------LGSAKGWAASLLLNEGIKTQL-------NKFIARSDTFSFGVC 766
P S +D + S + LL ++ + L N + F+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNL--- 264
Query: 767 NGCQLMNLLGWFSVSTQARQPYIKSRVRCPPLKKEKSGVNITRLSI---TLNFSTSDTLS 823
C+++ ++T R + + S T +S+ ++ + + S
Sbjct: 265 -SCKIL-------LTT--RFKQVTDFL---------SAATTTHISLDHHSMTLTPDEVKS 305
Query: 824 WLLDSNTNVTVSALSWAFMVNVSSFPAHFMILVILRKKREHDLDTLQGHLY 874
LL + L ++ + P + +I R+ L T +
Sbjct: 306 -LLLKYLDCRPQDLP-REVLTTN--P--RRLSIIAESIRDG-LATWDNWKH 349
Score = 55.2 bits (132), Expect = 8e-08
Identities = 83/668 (12%), Positives = 177/668 (26%), Gaps = 202/668 (30%)
Query: 182 HIFHYSF-SGRFAFKNHGIYDHLDRS--QCLPIRYVDD------NNKITEDYPMNPNGSP 232
H H F +G ++ I + + + V D + + + M+ +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 233 GKR------ERKKKTG--RYLG------------KYGHGAVQKGMPFKDYHGKTGRVFNV 272
G K++ +++ Q M + Y + R++N
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 273 TQHAVGVIVNKRVRTRIIPKSAEKISSSVSR----------------KTCLAQFYVADGK 316
Q + K +R + K+ ++ KT +A K
Sbjct: 123 NQ-----VFAKYNVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 317 LSCQLYQRSADMGLGVPF--NIASY----SLLTYM--IAHVTGLQRTSNMTNSKGYRRGT 368
+ C+ M + F N+ + ++L + + + TS +S +
Sbjct: 176 VQCK-------MDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 369 -------RDLFSRPFRRHGTIPLS-VYMKVYKVGDIVDIKCAESFYDRMTECVYSSPLTS 420
R L + + L V K + ++ C ++ LT+
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFNLSC------KIL-------LTT 272
Query: 421 FNHGIKPDPWFYVDVMGKGKVAFNSNSLVFFQCAESFYDRMTECVYSSPLTSFNHGIKPD 480
+ D + SL + + + L +P
Sbjct: 273 RFKQV-------TDFLSAATTT--HISLDHHS--MTLTPDEVKSLLLKYL-----DCRPQ 316
Query: 481 --PWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEWDLEY 538
P + L ++L I + WD
Sbjct: 317 DLP----------REVLTTNPRRLSIIAESIRDGL------------------ATWD--N 346
Query: 539 YTDIFRNKLKR-NPTSVECFDLAQSNSEHSRHWFFKISVAVNNEPVLNED----LGTLFL 593
+ + +KL +S+ + R F ++S V L L
Sbjct: 347 WKHVNCDKLTTIIESSLNVLE-----PAEYRKMFDRLS-------VFPPSAHIPTILLSL 394
Query: 594 IWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQY----------QPVRDDIVGATLGK 643
IW + +N + SLV + + + ++ L +
Sbjct: 395 IWFDVIKSDVMVVVN-KLHKY---SLVEKQPKESTISIPSIYLELKVKLENE---YALHR 447
Query: 644 KVTRIGPKYQYQPVR----DDIVGATLGKKVIS-IAVLREEGINGDREMSAMAQVCGFEV 698
+ Y + DD++ L + S I + + +
Sbjct: 448 SIVD-----HYNIPKTFDSDDLIPPYLDQYFYSHIG----------HHLKNIEHPERMTL 492
Query: 699 WDITVQDL--LENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQ----LN 752
+ + D LE KI R + S + L K + + N+ + +
Sbjct: 493 FRMVFLDFRFLEQKI---RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 753 KFIARSDT 760
F+ + +
Sbjct: 550 DFLPKIEE 557
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure,
ATP-binding, cytoplasm, ligase, nucleotide-binding,
purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga
maritima}
Length = 213
Score = 55.9 bits (136), Expect = 6e-09
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 12/98 (12%)
Query: 673 IAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADALG 732
V+ G N DR+ ++ GFE + LD ++ ++ PGGFSY D L
Sbjct: 5 ACVVVYPGSNCDRDAYHALEINGFEP------SYVGLDDKLDDYELIILPGGFSYGDYLR 58
Query: 733 SAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQ 770
A + E + K A G+CNG Q
Sbjct: 59 PGAVAAREKIAFE-----IAKA-AERGKLIMGICNGFQ 90
>3ac6_A Phosphoribosylformylglycinamidine synthase 2; purine metabolism,
ATP-binding, ligase, nucleotide-binding, biosynthesis;
HET: ADP; 2.35A {Thermus thermophilus} PDB: 3viu_A*
Length = 725
Score = 51.5 bits (124), Expect = 1e-06
Identities = 20/97 (20%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 68 PPNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVH 127
P + L ++ ++ S+ + + D V A P A V +
Sbjct: 386 PLEADPQEVLRRLLASPNLASREAVYERYDHQVGTRTAL--------LPGKGDAAVLWIK 437
Query: 128 NDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLV 164
G A + + P + P+ GA A+AEA N+
Sbjct: 438 GTRLGVAAKVDQNPRYSRLHPRLGAMHALAEACRNVS 474
Score = 32.6 bits (75), Expect = 0.67
Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 526 EVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEH-----SRHWF 571
E+G+ E Y +I +L R P VE SEH SR
Sbjct: 7 EIGIPEGE-----YREI-VQRLGREPNRVELLLFKVMWSEHCAYKNSRPLL 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 4e-05
Identities = 28/170 (16%), Positives = 45/170 (26%), Gaps = 83/170 (48%)
Query: 22 QHIRAPGPEQRHAPCISHIVTLTSYISI---PQVFTLARAPGFPTTAHTPPNISVLQALN 78
++ H P + IS+ + ++ G P + L LN
Sbjct: 351 DYVNK---TNSHLPAGKQV-----EISLVNGAKNLVVS---GPPQS---------LYGLN 390
Query: 79 NVMRLVS-----------------VGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPL---- 117
+R S RFL V P H+ L
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP------VAS---------PFHSHLLVPA 435
Query: 118 -----ADVAVVAL----------VHN-----DLRGAATSIGEQPIKGLVD 147
D+ + V++ DLR + SI E+ +VD
Sbjct: 436 SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER----IVD 481
Score = 43.5 bits (102), Expect = 4e-04
Identities = 38/228 (16%), Positives = 79/228 (34%), Gaps = 78/228 (34%)
Query: 525 HEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWF-FKISVAVNNEPV 583
E G+ ++ Y K + + + ++ A H + + F I V N PV
Sbjct: 1627 QEQGMG-----MDLY--------KTSKAAQDVWNRA---DNHFKDTYGFSILDIVINNPV 1670
Query: 584 LNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGP--KYQYQPVRDDIVGATL 641
+L F + ++++ N Y++++ K + + + +I +
Sbjct: 1671 ---NLTIHF-----GGEKGKRIREN-------YSAMIFETIVDGKLKTEKIFKEINEHS- 1714
Query: 642 GKKVTRIGPKY-----QY-QPVRDDIVGATLGKKVISIA---VLREEG-INGDR------ 685
T K Q+ QP A ++ A L+ +G I D
Sbjct: 1715 -TSYTFRSEKGLLSATQFTQP-------ALT---LMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 686 --EMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYADAL 731
E +A+A + ++++ L+E +VF G + A+
Sbjct: 1764 LGEYAALASLADV----MSIESLVE----------VVFYRGMTMQVAV 1797
Score = 32.7 bits (74), Expect = 0.76
Identities = 78/539 (14%), Positives = 149/539 (27%), Gaps = 183/539 (33%)
Query: 469 PLTSFNHG-------IKPDPWFYVDVMGKG-KVALQEVNQKLGQ-------IGLL--FIY 511
PLT +HG + +F + + L E + L+ F+
Sbjct: 8 PLT-LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 512 FIVQRT-KLCIVQRHEV-GLAFDEWDLEYY--TDI----------FRNKLKRNPTSVECF 557
++ + Q +V L E++ Y DI L + ++ +
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 558 DLA-----QSNSEHSRHWFFKIS-------VAV-----NNEPVLNEDLGTLF-------- 592
A + + S F+ VA+ N + E L L+
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVG 185
Query: 593 -LIWERTSYELEKLQMNARCADEEYN------SLVTRIG--PKYQY---QPVRDDIVGAT 640
LI + ++ L +L A++ + + P Y P+ ++G
Sbjct: 186 DLI-KFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVI 244
Query: 641 -LGK-KVTRIGPKYQYQPVRDDIVGAT-LGKKVIS---IA-------------------- 674
L VT + +R + GAT + +++ IA
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 675 ------------------VLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRF 716
+L + N + S M + Q+ +++ +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLT------QEQVQDYVNKTN- 357
Query: 717 KGLVFPGGFSYADAL-GSAK-----GWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQ 770
L P G +L AK G SL G+ L K A S
Sbjct: 358 SHL--PAGKQVEISLVNGAKNLVVSGPPQSL---YGLNLTLRKAKAPSGL---------- 402
Query: 771 LMNLLGWFSVSTQARQPYIKSRVR-------------CPPLKKEKSGVNITRLSITLNFS 817
Q+R P+ + +++ L +N + ++F+
Sbjct: 403 -----------DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN 451
Query: 818 TSD-------TLSW--LLDSNTNVTVSALSWAFMVNVSSFPAHFMILVILRKKREHDLD 867
D T L + +++ + P + + K H LD
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCII-----RLPVKWETTT--QFKATHILD 503
>1vk3_A Phosphoribosylformylglycinamidine synthase II; TM1246, structural
genomics, JCSG, PSI, protein structure initiative; 2.15A
{Thermotoga maritima} SCOP: d.79.4.1 d.79.4.1 d.139.1.1
d.139.1.1 PDB: 3d54_A* 2hs3_A* 2hs0_A* 2hs4_A* 2hru_A*
2hry_A*
Length = 615
Score = 44.2 bits (105), Expect = 1e-04
Identities = 21/113 (18%), Positives = 35/113 (30%), Gaps = 19/113 (16%)
Query: 54 TLARAPGFPTTAHTPPNISVLQAL--NNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVG 111
LA AP +TP I + + V R + + D V
Sbjct: 348 LLANAPEEDIVEYTPGKIPEFKRVEFEEVN-------AREVFEQYDHMVGTDTVV----- 395
Query: 112 PLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLV 164
P AV+ + + G + + L D G +AV E++ +
Sbjct: 396 ---PPGFGAAVMRIKRD--GGYSLVTHSRADLALQDTYWGTLIAVLESVRKTL 443
Score = 33.5 bits (77), Expect = 0.36
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 11/54 (20%)
Query: 522 VQRHEVGLAFDEWDLEYYTDIFRNKLKRNPTSVECFDLAQSNSEH-----SRHW 570
+ H + + I + KL R PT VE + SEH ++ +
Sbjct: 6 IHHHHHHMKLRYLN------ILKEKLGREPTFVELQAFSVMWSEHCGYSHTKKY 53
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 42.9 bits (101), Expect = 5e-04
Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 50/188 (26%)
Query: 298 SSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLG---VPFNIASYSLLTYMIAHVTGLQR 354
+S S++ +Y +Y + G VPFN S + +I + ++
Sbjct: 508 TSRFSKQV--TDYYQ-------SIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEK 558
Query: 355 TSNMTNSKGYRRGTRDLFSRPF----RRHGTI----PLS-VYMKVYKV------GDIVDI 399
+ G+ D PF + + S ++ G +
Sbjct: 559 NGGL----GW---DLDAII-PFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQ 610
Query: 400 KCAESFYDRMTECVYSSPLTSFNHGIKPDPWFYVDVM-GKGKVAFNSNSLVFFQ--CAES 456
K A R + + P+ S NHG F D M + K++ + F +ES
Sbjct: 611 KSARGIETRPAQVIL--PM-SPNHGT-----FGGDGMYSESKLSLET----LFNRWHSES 658
Query: 457 FYDRMTEC 464
+ +++T C
Sbjct: 659 WANQLTVC 666
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich,
rossmann fold, glutaminase; 1.73A {Bacillus subtilis}
SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Length = 196
Score = 37.8 bits (88), Expect = 0.007
Identities = 25/104 (24%), Positives = 39/104 (37%), Gaps = 20/104 (19%)
Query: 670 VISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYA 728
+++I VL G+ G RE + CG + V+ + L+ GL+ PGG S
Sbjct: 1 MLTIGVL---GLQGAVREHIHAIEACGAAG--LVVKRPEQ----LNEVDGLILPGGES-- 49
Query: 729 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
L+ L +F A FG C G ++
Sbjct: 50 -------TTMRRLIDTYQFMEPLREFAA-QGKPMFGTCAGLIIL 85
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis,
structural genomics, NPPSFA; 1.90A {Thermus
thermophilus}
Length = 191
Score = 36.8 bits (85), Expect = 0.014
Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 19/103 (18%)
Query: 671 ISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYAD 729
+ VL + GD RE + G E V+ L+ K L+ PGG S
Sbjct: 3 GVVGVL---ALQGDFREHKEALKRLGIEA--KEVRKKEH----LEGLKALIVPGGESTT- 52
Query: 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
L GI+ ++ K + FG C G +
Sbjct: 53 --------IGKLAREYGIEDEVRKRVEEGSLALFGTCAGAIWL 87
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel,
alpha/beta three layer sandwich, lyase transferase; HET:
5RP; 2.90A {Thermotoga maritima}
Length = 208
Score = 36.7 bits (85), Expect = 0.016
Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 20/104 (19%)
Query: 670 VISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYA 728
+ I VL G+ GD RE G E + V+ + LD GL+ PGG S
Sbjct: 20 HMKIGVL---GVQGDVREHVEALHKLGVET--LIVKLPEQ----LDMVDGLILPGGESTT 70
Query: 729 DALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
+L + +L + I + F C G L+
Sbjct: 71 ---------MIRILKEMDMDEKLVERIN-NGLPVFATCAGVILL 104
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2,
predicted glutamine amidotransferase, PSI; HET: MSE;
1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Length = 219
Score = 35.9 bits (83), Expect = 0.032
Identities = 29/103 (28%), Positives = 41/103 (39%), Gaps = 20/103 (19%)
Query: 671 ISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYAD 729
+ I VL G+ G RE + CG E + V+ + L+ GLV PGG S
Sbjct: 24 MKIGVL---GLQGAVREHVRAIEACGAEA--VIVKKSEQ----LEGLDGLVLPGGES--- 71
Query: 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
L+ G+ L +F A + FG C G L+
Sbjct: 72 ------TTMRRLIDRYGLMEPLKQFAA-AGKPMFGTCAGLILL 107
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis
enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A
{Vibrio cholerae o1 biovar el tor}
Length = 208
Score = 33.0 bits (76), Expect = 0.23
Identities = 17/97 (17%), Positives = 26/97 (26%), Gaps = 24/97 (24%)
Query: 670 VISIAVLREEGIN-------GDREMSAMAQVCGFEVWDITVQ-DLLENKITLDRFKGLVF 721
VI + L G ++ + + + + + F L
Sbjct: 26 VIIVDTLVRAGFQVTMAAVGDKLQVQGS--------RGVWLTAEQTLEACSAEAFDALAL 77
Query: 722 PGGFSYADALGSAKGWAASLLLNEGIKTQL--NKFIA 756
PGG A A A S L I K +A
Sbjct: 78 PGGVGGAQAF------ADSTALLALIDAFSQQGKLVA 108
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved
protein, structural genomics; 1.90A {Methanocaldococcus
jannaschii}
Length = 186
Score = 32.7 bits (75), Expect = 0.30
Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 23/103 (22%)
Query: 671 ISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYAD 729
+ I VL I GD E + G+E V+ + + L+ L+ PGG S
Sbjct: 1 MIIGVL---AIQGDVEEHEEAIKKAGYEA--KKVKRVED----LEGIDALIIPGGEST-- 49
Query: 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
A L+ + L + I S+ G C G L+
Sbjct: 50 --------AIGKLMKK---YGLLEKIKNSNLPILGTCAGMVLL 81
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown
function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Length = 205
Score = 33.0 bits (76), Expect = 0.30
Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 14/93 (15%)
Query: 670 VISIAVLREEGINGDREMSAMAQVCGFEV---WDITVQ-DLLENKITLDRFKGLVFPGGF 725
V +I +L GI +++A + + + D ++ + +V PGG
Sbjct: 19 VTTIDLLVRGGIKVT--TASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76
Query: 726 SYADALGSAKGWAASLLLNEGIKTQL--NKFIA 756
A+ S LL E +K + +A
Sbjct: 77 KGAECF------RDSTLLVETVKQFHRSGRIVA 103
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein;
2.00A {Drosophila melanogaster}
Length = 190
Score = 31.7 bits (73), Expect = 0.57
Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 18/94 (19%)
Query: 670 VISIAVLREEGINGDREMSAMAQVCGFEV----WDITVQ-DLLENKITLDRFKGLVFPGG 724
+I+ VLR GI +A + G E D+ + D ++ D+F +V PGG
Sbjct: 22 IIAADVLRRAGIKVT-----VAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGG 76
Query: 725 FSYADALGSAKGWAASLLLNEGIKTQL--NKFIA 756
++A+ S L+ + +++Q IA
Sbjct: 77 LGGSNAM------GESSLVGDLLRSQESGGGLIA 104
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function,
cysteine oxidation; 1.05A {Schizosaccharomyces pombe}
PDB: 4ge3_A 4ge0_A
Length = 194
Score = 31.8 bits (73), Expect = 0.65
Identities = 11/91 (12%), Positives = 33/91 (36%), Gaps = 17/91 (18%)
Query: 669 KVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYA 728
+ + ++ + R++ A + + +++ ++ + PGG A
Sbjct: 35 DSVYVGENKDRLVKMSRDVEMYA--------NRSYKEIPSADDFAKQYDIAIIPGGGLGA 86
Query: 729 DALGSAKGWAASLLLNEGIK---TQLNKFIA 756
L + + + + +K + NK+I
Sbjct: 87 KTL------STTPFVQQVVKEFYKKPNKWIG 111
>3nyi_A FAT acid-binding protein; stearic acid, DEGV family protein,
structural genomics, PSI- protein structure initiative;
HET: STE; 1.90A {Eubacterium ventriosum}
Length = 297
Score = 31.1 bits (71), Expect = 1.4
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 382 IPLSVYM--KVYKVGDIVDIKCAESFYDRMTECVYSSPLTS 420
+PLSV + Y D VDI + Y RM + P TS
Sbjct: 28 VPLSVSFDGETY-YRDGVDIT-RDECYQRMVDDPKLFPKTS 66
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure
initiative, NE SGX research center for structural
genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas
aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Length = 326
Score = 30.6 bits (70), Expect = 2.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 5/31 (16%)
Query: 52 VFTLARAPGFPTTAH----TPPNISVLQALN 78
VF AR+ GF T AH PP + +AL+
Sbjct: 182 VFDRARSEGFLTVAHAGEEGPPE-YIWEALD 211
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A
{Arthrobacter aurescens}
Length = 343
Score = 29.9 bits (68), Expect = 3.4
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 5/31 (16%)
Query: 52 VFTLARAPGFPTTAH----TPPNISVLQALN 78
++ A G AH P + + +AL+
Sbjct: 185 LYQRAAEAGLRRIAHAGEEGPAS-YITEALD 214
>3iar_A Adenosine deaminase; purine metabolism structural genomics,
structural genomics consortium, SGC, D mutation,
hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A
{Homo sapiens} PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A*
1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A*
1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A*
3mvi_A 1a4l_A* ...
Length = 367
Score = 29.9 bits (68), Expect = 3.5
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 13/55 (23%)
Query: 28 GPEQRHAPCISHIVTLTSYISIPQVFTLARAPGFPTTAH----TPPNISVLQALN 78
G E + Q + A G T H V +A++
Sbjct: 181 GDETIPGS--------SLLPGHVQAYQEAVKSGIHRTVHAGEVGSAE-VVKEAVD 226
>1u1z_A (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase; fatty
acid biosynthesis, hot DOG fold, lyase; 2.50A
{Pseudomonas aeruginosa} SCOP: d.38.1.6
Length = 168
Score = 28.8 bits (65), Expect = 4.5
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 689 AMAQVCGFEVWDITVQDLLENKITL----D--RFKGLVFPG 723
AMAQ G + + + + D RF+ V PG
Sbjct: 84 AMAQAAGILGFKMLDVKPADGTLYYFVGSDKLRFRQPVLPG 124
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone,
cytoplasm, disease mutation, nucleus, oncogene,
oxidation, parkinson disease; 1.05A {Homo sapiens} PDB:
1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A*
3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A
2or3_A 3bwe_A 3b38_A 3b36_A ...
Length = 197
Score = 29.1 bits (66), Expect = 4.7
Identities = 21/97 (21%), Positives = 34/97 (35%), Gaps = 23/97 (23%)
Query: 670 VISIAVLREEGIN------GDREMSAMAQVCGFEVWDITVQ--DLLENKITLDRFKGLVF 721
VI + V+R GI ++ + D+ + LE+ + +V
Sbjct: 20 VIPVDVMRRAGIKVTVAGLAGKDPVQCS-------RDVVICPDASLEDAKKEGPYDVVVL 72
Query: 722 PGGFSYADALGSAKGWAASLLLNEGIKTQL--NKFIA 756
PGG A L + S + E +K Q IA
Sbjct: 73 PGGNLGAQNL------SESAAVKEILKEQENRKGLIA 103
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI
superfamily, protease hydrolase, stress response; 2.15A
{Deinococcus radiodurans}
Length = 190
Score = 29.1 bits (66), Expect = 4.7
Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 18/83 (21%)
Query: 667 GKKVISIA--------------VLREEGINGD---REMSAMAQVCGFEVWDITVQ-DLLE 708
GKK+ +A + G + E + + G + D +
Sbjct: 9 GKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVV 68
Query: 709 NKITLDRFKGLVFPGGFSYADAL 731
+++ + + GL+ PGG D L
Sbjct: 69 SEVQVSDYDGLLLPGGTVNPDKL 91
>1yrr_A N-acetylglucosamine-6-phosphate deacetylase; (beta/alpha)8 barrel,
beta sandwich, hydrolase; 2.00A {Escherichia coli} SCOP:
b.92.1.5 c.1.9.10 PDB: 1ymy_A 2p50_A 2p53_A*
Length = 382
Score = 29.5 bits (67), Expect = 5.5
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
Query: 3 LGIHP-GAFSRVPYHGAHSSQHIRAPGPE-----QRHAPCISHIVTL 43
LG+H G + + G H+ +R P +A I+ VTL
Sbjct: 126 LGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLCENADVIT-KVTL 171
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite,
siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in
europe; HET: SRM; 2.80A {Mycobacterium tuberculosis}
SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB:
1zj9_A*
Length = 566
Score = 29.6 bits (67), Expect = 5.6
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 194 FKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPM----NPNG 230
F+ G+Y ++ D+ +K+ Y M G
Sbjct: 74 FRWWGLYTQREQGYDGTWTGDDNIDKLEAKYFMMRVRCDGG 114
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria,
transferase; HET: PG4; 1.62A {Plasmodium falciparum}
SCOP: c.23.16.1 PDB: 4ads_G
Length = 227
Score = 28.9 bits (64), Expect = 5.9
Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 671 ISIAVLREEGINGD-REMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFSYAD 729
I+I VL + GD +I + + L GLV PGG S
Sbjct: 4 ITIGVL---SLQGDFEPHINHFIKLQIPSLNIIQVRNVHD---LGLCDGLVIPGGESTTV 57
Query: 730 ALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
N+ + L FI +G C GC L+
Sbjct: 58 RR-------CCAYENDTLYNALVHFIHVLKKPIWGTCAGCILL 93
>2vpv_A Protein MIF2, MIF2P; nucleus, mitosis, centromere, cell cycle,
DNA-binding, kinetochore, cell division, phosphoprotein,
jelly-roll fold; 2.7A {Saccharomyces cerevisiae}
Length = 166
Score = 28.5 bits (63), Expect = 6.7
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 14/94 (14%)
Query: 253 VQKGMPFKDYHGKTGRVFNVTQH--AVGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQF 310
++ KD + +F+ + A G++ +P + + S S +T + F
Sbjct: 64 TEQVKDTKDENFALEIMFDKHKEYFASGIL--------KLPAISGQKKLSNSFRTYIT-F 114
Query: 311 YVADGKLSCQLYQRSADMGLGVPFNI---ASYSL 341
+V G + + + G F I Y++
Sbjct: 115 HVIQGIVEVTVCKNKFLSVKGSTFQIPAFNEYAI 148
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein
struct initiative, midwest center for structural
genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron
vpi-5482}
Length = 175
Score = 28.3 bits (64), Expect = 6.8
Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 35/116 (30%)
Query: 667 GKKVISIA--------------VLREEGINGDREMSAMAQVCGFE-------VWDITVQ- 704
KKV +A E GI+ +V + +
Sbjct: 2 AKKVAVLAVNPVNGCGLFQYLEAFFENGIS--------YKVFAVSDTKEIKTNSGMVLIV 53
Query: 705 DLL--ENKITLDRFKGLVFPGGFSYADALGSAKGWAASLLLNEGIKTQL--NKFIA 756
D + K D F LVF G + ++ L E IKT K +
Sbjct: 54 DDVIANLKGHEDEFDALVFSCGDA-VPVFQQYANQPYNVDLMEVIKTFGEKGKMMI 108
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 28.7 bits (65), Expect = 9.2
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 253 VQKGMPFKDYHGKTGRV 269
+KG+PF++ H GR+
Sbjct: 378 AEKGLPFREAHHVVGRL 394
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0795 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,421,108
Number of extensions: 822067
Number of successful extensions: 1529
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1515
Number of HSP's successfully gapped: 77
Length of query: 875
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 773
Effective length of database: 3,853,851
Effective search space: 2979026823
Effective search space used: 2979026823
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (27.5 bits)