RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5570
(875 letters)
>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL,
amidotransferase domain {Salmonella typhimurium [TaxId:
90371]}
Length = 262
Score = 104 bits (260), Expect = 2e-25
Identities = 48/112 (42%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 667 GKKVISIAVLREEGINGDREMSAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGFS 726
G + +AVLRE+G+N EM+A GF+ D+ + DLL +I L F LV GGFS
Sbjct: 4 GARP-KVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHALVACGGFS 62
Query: 727 YADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLMNLLGWF 778
Y D LG+ +GWA S+L N ++ + F R T + GVCNGCQ+M+ L
Sbjct: 63 YGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLREL 114
Score = 42.8 bits (100), Expect = 1e-04
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Query: 181 IHIFHYSFSGRFAFKNHGIYDHLDRSQCLPIRYVDDNNKITEDYPMNPNGSPGKRER-KK 239
+ I GR ++ L+ + +RYVD+ K+TE YP NPNGSP
Sbjct: 157 MPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTT 216
Query: 240 KTGRYLGKYGH 250
+ GR H
Sbjct: 217 ENGRVTIMMPH 227
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 68
Score = 85.6 bits (212), Expect = 4e-21
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 26/92 (28%)
Query: 478 KPDPWFYVDVMGKGKVALQEVNQKLGQIGLLFIYFIVQRTKLCIVQRHEVGLAFDEWDLE 537
+P P VD++G+G+ AL + N +LG LA E +++
Sbjct: 2 QPAPVSSVDLLGEGRQALIDANLRLG-------------------------LALAEDEID 36
Query: 538 YYTDIFRNKLKRNPTSVECFDLAQSNSEHSRH 569
Y + F KL RNP +E + AQ+NSEH RH
Sbjct: 37 YLQEAFT-KLGRNPNDIELYMFAQANSEHCRH 67
>d1t3ta5 d.79.4.1 (A:617-816) FGAM synthase PurL, PurM-like module,
N1 and N2 domains {Salmonella typhimurium [TaxId:
90371]}
Length = 200
Score = 86.7 bits (214), Expect = 5e-20
Identities = 43/106 (40%), Positives = 61/106 (57%)
Query: 69 PNISVLQALNNVMRLVSVGSKRFLTNKVDRCVTGLIAQQQCVGPLHTPLADVAVVALVHN 128
+I++ A+ V+ L +V K FL DR VTG++A+ Q VGP P+AD AV +
Sbjct: 13 ADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAVTTASLD 72
Query: 129 DLRGAATSIGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFL 174
G A SIGE+ L+D AR+AV EALTN+ +I D+K +
Sbjct: 73 SYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRI 118
>d1vqoq1 b.34.5.1 (Q:1-95) Ribosomal proteins L21e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 95
Score = 76.7 bits (189), Expect = 1e-17
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 360 NSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVYKVGDIVDIKCAESFYDRMTECVY 414
+S G GTR R GT P ++ + G+ V +K S + +
Sbjct: 2 SSNGPLEGTRGKLKNKPRDRGTSPPQRAVEEFDDGEKVHLKIDPSVPNGRFHPRF 56
Score = 59.3 bits (144), Expect = 2e-11
Identities = 10/54 (18%), Positives = 18/54 (33%)
Query: 237 RKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRII 290
+ G + +V G + G+TG V A V + + + I
Sbjct: 31 EEFDDGEKVHLKIDPSVPNGRFHPRFDGQTGTVEGKQGDAYKVDIVDGGKEKTI 84
>d1vk3a1 d.79.4.1 (A:2-166) Phosphoribosylformylglycinamidine
synthase II, domains 1 and 3 {Thermotoga maritima
[TaxId: 2336]}
Length = 165
Score = 55.0 bits (132), Expect = 2e-09
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 539 YTDIFRNKLKRNPTSVECFDLAQSNSEHSRHWFFK 573
Y +I + KL R PT VE + SEH + K
Sbjct: 4 YLNILKEKLGREPTFVELQAFSVMWSEHCGYSHTK 38
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4
[TaxId: 10665]}
Length = 241
Score = 55.4 bits (133), Expect = 6e-09
Identities = 11/62 (17%), Positives = 21/62 (33%)
Query: 294 AEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
K S T Q+ + D K++ + RS D+ G + A + +
Sbjct: 138 YNKDGMSDFMCTNTVQYLIRDKKINAVVNMRSNDVVFGFRNDYAWQKYVLDKLVSDLNAG 197
Query: 354 RT 355
+
Sbjct: 198 DS 199
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei
[TaxId: 1582]}
Length = 316
Score = 51.2 bits (122), Expect = 2e-07
Identities = 45/124 (36%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 236 ERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAVGVIVNKRVRTRII----- 290
+R + KYG + G ++ +H G + + I +I
Sbjct: 127 DRVLHDDAFAAKYGDLGLVYGSQWRAWHTSKGDTIDQLGDVIEQIKTHPYSRALIVSAWN 186
Query: 291 PKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVT 350
P+ ++ L QFYV DGKLS QLYQRSAD+ LGVPFNIASY+LLT+++AH
Sbjct: 187 PEDVPTMALPPC--HTLYQFYVNDGKLSLQLYQRSADIFLGVPFNIASYALLTHLVAHEC 244
Query: 351 GLQR 354
GL+
Sbjct: 245 GLEV 248
>d1t3ta7 d.139.1.1 (A:817-1033) FGAM synthase PurL, PurM-like
module, C1 and C2 domains {Salmonella typhimurium
[TaxId: 90371]}
Length = 217
Score = 47.1 bits (111), Expect = 2e-06
Identities = 16/67 (23%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 573 KISVAVNNEPVLNEDLGTLFLIWERTSYELEKLQMNARCADEEYNSLVTRIGPKYQYQP- 631
+ + N++ V +E TL + W T++++++L+ N +CAD+E+ + P +
Sbjct: 147 RFVITANDQTVFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLS 206
Query: 632 --VRDDI 636
+ +DI
Sbjct: 207 FDINEDI 213
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli
[TaxId: 562]}
Length = 264
Score = 44.7 bits (105), Expect = 2e-05
Identities = 45/139 (32%), Positives = 63/139 (45%), Gaps = 10/139 (7%)
Query: 218 NKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRVFNVTQHAV 277
T ++ N E + G YG ++ + GR + +
Sbjct: 64 QGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQ-------WRAWPTPDGRHIDQITTVL 116
Query: 278 GVIVNKRVRTRII---PKSAEKISSSVSRKTCLAQFYVADGKLSCQLYQRSADMGLGVPF 334
+ N RII E +++ QFYVADGKLSCQLYQRS D+ LG+PF
Sbjct: 117 NQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLSCQLYQRSCDVFLGLPF 176
Query: 335 NIASYSLLTYMIAHVTGLQ 353
NIASY+LL +M+A L+
Sbjct: 177 NIASYALLVHMMAQQCDLE 195
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii
[TaxId: 4754]}
Length = 295
Score = 44.3 bits (104), Expect = 3e-05
Identities = 45/154 (29%), Positives = 59/154 (38%), Gaps = 10/154 (6%)
Query: 211 IRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYH-GKTGRV 269
+ + N D + K++ G YG G + D G+
Sbjct: 74 SLKLREKNIHIWDANGSREYLDSIGLTKRQEGDLGPIYGFQWRHFGAEYIDCKTNYIGQG 133
Query: 270 FNVTQHAVGVIVNKRVRTRII---------PKSAEKISSSVSRKTCLAQFYVADGKLSCQ 320
+ + + I R+I K A + +LSCQ
Sbjct: 134 VDQLANIIQKIRTSPYDRRLILSAWNPADLEKMALPPCHMFCQFYVHIPSNNHRPELSCQ 193
Query: 321 LYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQR 354
LYQRS DMGLGVPFNIASY+LLT MIAHV L
Sbjct: 194 LYQRSCDMGLGVPFNIASYALLTCMIAHVCDLDP 227
>d1hvya_ d.117.1.1 (A:) Thymidylate synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 288
Score = 43.9 bits (103), Expect = 4e-05
Identities = 38/49 (77%), Positives = 43/49 (87%)
Query: 305 TCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
L QFYV + +LSCQLYQRS DMGLGVPFNIASY+LLTYMIAH+TGL+
Sbjct: 171 HALCQFYVVNSELSCQLYQRSGDMGLGVPFNIASYALLTYMIAHITGLK 219
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 42.7 bits (100), Expect = 1e-04
Identities = 26/49 (53%), Positives = 32/49 (65%)
Query: 305 TCLAQFYVADGKLSCQLYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQ 353
+ D LSC LYQRS D+GLG PFNIASY++LT M+A V G +
Sbjct: 172 VLSQYYVTNDNCLSCNLYQRSCDLGLGSPFNIASYAILTMMLAQVCGYE 220
>d1j3kc_ d.117.1.1 (C:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 326
Score = 38.5 bits (89), Expect = 0.002
Identities = 44/154 (28%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 211 IRYVDDNNKITEDYPMNPNGSPGKRERKKKTGRYLGKYGHGAVQKGMPFKDYHGKTGRV- 269
+ + N + ++ ++ YG G + + +
Sbjct: 111 GNTLLNKNVRIWEANGTREFLDNRKLFHREVNDLGPIYGFQWRHFGAEYTNMYDNYENKG 170
Query: 270 FNVTQHAVGVIVNKRVRTRI---------IPKSAEKISSSVSRKTCLAQFYVADGKLSCQ 320
+ ++ + +I N RI + + A L QFYV DGKLSC
Sbjct: 171 VDQLKNIINLIKNDPTSRRILLCAWNVKDLDQMALPPCH------ILCQFYVFDGKLSCI 224
Query: 321 LYQRSADMGLGVPFNIASYSLLTYMIAHVTGLQR 354
+YQRS D+GLGVPFNIASYS+ T+MIA V LQ
Sbjct: 225 MYQRSCDLGLGVPFNIASYSIFTHMIAQVCNLQP 258
>d1t3ta3 d.284.1.2 (A:1-152) FGAM synthase PurL, PurS-like domain
{Salmonella typhimurium [TaxId: 90371]}
Length = 152
Score = 30.4 bits (68), Expect = 0.52
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 22/86 (25%)
Query: 332 VPFNIASYSLLTYMIAHVTGLQRTSNMTNSKGYRRGTRDLFSRPFRRHGTIPLSVYMKVY 391
P I+ +S IAH GLQ+ + Y L + +R
Sbjct: 80 RPGTISPWSSKATDIAHNCGLQQVDRLERGVAYYIEASTLTAEQWR-------------- 125
Query: 392 KVGDIVDIKCAESFYDRMTECVYSSP 417
+ A +DRM E V+SS
Sbjct: 126 --------QVAAELHDRMMETVFSSL 143
Score = 29.6 bits (66), Expect = 0.78
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 452 QCAESFYDRMTECVYSSP 469
Q A +DRM E V+SS
Sbjct: 126 QVAAELHDRMMETVFSSL 143
>d1lm5a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 196
Score = 30.0 bits (67), Expect = 0.93
Identities = 9/45 (20%), Positives = 21/45 (46%)
Query: 141 PIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFH 185
PI + D + ++++ E + + I+ + L A + + I H
Sbjct: 3 PIAAIFDTENLEKISITEGIERGIVDSITGQRLLEAQACTGGIIH 47
Score = 27.3 bits (60), Expect = 6.0
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 139 EQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRS 180
K L PK +++ +A+ + I+ L+ L A+S S
Sbjct: 153 SSYAKILTCPKTKLKISYKDAINRSMVEDITGLRLLEAASVS 194
>d1j2na_ a.165.1.1 (A:) Myosin phosphatase inhibitor 17kDa protein,
CPI-17 {Pig (Sus scrofa) [TaxId: 9823]}
Length = 99
Score = 28.5 bits (64), Expect = 1.0
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 228 PNGSPGKRERKKKTGRYLGKYGHGAVQK 255
P GSPG +++ R KY +Q+
Sbjct: 2 PGGSPGGLQKRH--ARVDVKYDRRELQR 27
>d1oqka_ b.137.1.1 (A:) Hypothetical protein MTH11 {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 78
Score = 27.8 bits (62), Expect = 1.3
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 16/72 (22%)
Query: 260 KDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKL-- 317
+D G +GRV + T++ + I R +PK + F G+L
Sbjct: 17 RDIQGISGRVVDETRNTL-RIEMDDGREITVPK-----------GIAVFHFRTPQGELVE 64
Query: 318 --SCQLYQRSAD 327
L R +
Sbjct: 65 IDGRALVARPEE 76
>d1vhqa_ c.23.16.2 (A:) Putative sigma cross-reacting protein 27A
(SCRP-27A, EllB) {Escherichia coli [TaxId: 562]}
Length = 217
Score = 29.2 bits (65), Expect = 1.7
Identities = 12/107 (11%), Positives = 32/107 (29%), Gaps = 7/107 (6%)
Query: 670 VISIAVLREEGINGDREM----SAMAQVCGFEVWDITVQDLLENKITLDRFKGLVFPGGF 725
+ + + IN + + + ++ L + L+ PGGF
Sbjct: 38 CFAPDKQQVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQ--ADAAELDALIVPGGF 95
Query: 726 SYADALGSAKGWAASLLLNEGIKTQLNKFIARSDTFSFGVCNGCQLM 772
A L + + ++ +K ++ +C ++
Sbjct: 96 GAAKNLSNFASLGSECTVDRELKALAQAM-HQAGKPLGFMCIAPAML 141
>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter
vinelandii [TaxId: 354]}
Length = 233
Score = 28.2 bits (62), Expect = 3.4
Identities = 16/111 (14%), Positives = 29/111 (26%), Gaps = 14/111 (12%)
Query: 59 PGFPTTAHTPPNISVLQALNN---------VMRLVSVGSKRFLTNKVDRCVTGLIAQQQC 109
L V + + S +T + V ++A +
Sbjct: 128 YLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLR 187
Query: 110 VGPLHTPLADVAVVALVHNDLRGAATSIGEQPIKGLVDPKRGARMAVAEAL 160
L L D A + ++ L +P R+A+A L
Sbjct: 188 GDDLLELLHDPDWTVR-----LAAVEHASLEALRELDEPDPEVRLAIAGRL 233
>d1lm7a_ d.211.2.1 (A:) Desmoplakin intermediate filament-binding
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 240
Score = 28.0 bits (62), Expect = 4.1
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 137 IGEQPIKGLVDPKRGARMAVAEALTNLVFAKISDLKFLFASSRSIHIFH 185
G I G+ + ++ + EA+ + + L+ L A + + I
Sbjct: 47 QGSSCIAGIYNETTKQKLGIYEAMKIGLVRPGTALELLEAQAATGFIVD 95
>d1ts9a_ b.137.1.1 (A:) Hypothetical protein AF1917 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 98
Score = 26.2 bits (58), Expect = 5.9
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 10/68 (14%)
Query: 260 KDYHGKTGRVFNVTQHAVGVIVNKRVRTRIIPKSAEKISSSVSRKTCLAQFYVADGKLSC 319
G G V + TQ+ + ++ K ++ + K K G
Sbjct: 24 HSEVGIKGEVVDETQNTLKIMTEKGLKV--VAKRGRTFRVWYKGKI-----MRIKGD--- 73
Query: 320 QLYQRSAD 327
+ R D
Sbjct: 74 LINFRPED 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.417
Gapped
Lambda K H
0.267 0.0639 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,266,094
Number of extensions: 155389
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 28
Length of query: 875
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 782
Effective length of database: 1,130,706
Effective search space: 884212092
Effective search space used: 884212092
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.9 bits)