BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5572
(62 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AXC|A Chain A, Human Pcna
pdb|1U76|A Chain A, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U76|C Chain C, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U76|E Chain E, Crystal Structure Of Hpcna Bound To Residues 452-466 Of
The Dna Polymerase-Delta-P66 Subunit
pdb|1U7B|A Chain A, Crystal Structure Of Hpcna Bound To Residues 331-350 Of
The Flap Endonuclease-1 (Fen1)
pdb|1VYJ|A Chain A, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|C Chain C, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|E Chain E, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|G Chain G, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|I Chain I, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYJ|K Chain K, Structural And Biochemical Studies Of Human Pcna Complexes
Provide The Basis For Association With CdkCYCLIN AND
Rationale For Inhibitor Design
pdb|1VYM|A Chain A, Native Human Pcna
pdb|1VYM|B Chain B, Native Human Pcna
pdb|1VYM|C Chain C, Native Human Pcna
pdb|1W60|A Chain A, Native Human Pcna
pdb|1W60|B Chain B, Native Human Pcna
pdb|1UL1|A Chain A, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|B Chain B, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|1UL1|C Chain C, Crystal Structure Of The Human Fen1-Pcna Complex
pdb|2ZVK|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVK|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVK|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Eta Fragment
pdb|2ZVL|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|D Chain D, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|E Chain E, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVL|F Chain F, Crystal Structure Of Pcna In Complex With Dna Polymerase
Kappa Fragment
pdb|2ZVM|A Chain A, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|2ZVM|B Chain B, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|2ZVM|C Chain C, Crystal Structure Of Pcna In Complex With Dna Polymerase
Iota Fragment
pdb|3P87|A Chain A, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|B Chain B, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|C Chain C, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|D Chain D, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|E Chain E, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3P87|F Chain F, Structure Of Human Pcna Bound To Rnaseh2b Pip Box Peptide
pdb|3VKX|A Chain A, Structure Of Pcna
pdb|3TBL|A Chain A, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|B Chain B, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
pdb|3TBL|C Chain C, Structure Of Mono-Ubiquitinated Pcna: Implications For Dna
Polymerase Switching And Okazaki Fragment Maturation
Length = 261
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 48/62 (77%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS+ V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 DN 62
+
Sbjct: 259 EG 260
>pdb|1AXC|C Chain C, Human Pcna
pdb|1AXC|E Chain E, Human Pcna
Length = 261
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 48/62 (77%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS+ V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 DN 62
+
Sbjct: 259 EG 260
>pdb|2ZVV|A Chain A, Crystal Structure Of Proliferating Cellular Nuclear
Antigen 1 And Short Peptide From Human P21
pdb|2ZVV|B Chain B, Crystal Structure Of Proliferating Cellular Nuclear
Antigen 1 And Short Peptide From Human P21
Length = 276
Score = 79.7 bits (195), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 50/58 (86%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
M+EPVSL+FA RY+ +F KA PLS+ V +S+S ++P+VVE+K+ ++G+IRYYLAPKIE
Sbjct: 219 MKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIE 276
>pdb|2ZVW|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|B Chain B, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|C Chain C, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|D Chain D, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|E Chain E, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|F Chain F, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|G Chain G, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
pdb|2ZVW|H Chain H, Crystal Structure Of Proliferating Cell Nuclear Antigen 2
And Short Peptide From Human P21
Length = 275
Score = 77.0 bits (188), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/57 (59%), Positives = 47/57 (82%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
M EPVSL+FA RY+ +F KA PLS V +S+S ++P+VVE+K+ ++G+IRYYLAPKI
Sbjct: 219 MNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKI 275
>pdb|3P91|A Chain A, Crystal Structure Of Proliferating Cellular Nuclear
Antigen From Entamoeba Histolytica
Length = 265
Score = 48.5 bits (114), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61
V+ +FA + + FAK+APL++ V LS+S PL++EFK + +++YLAPK + +D
Sbjct: 206 VTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFK-GEACVLKFYLAPKFDEED 261
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L10|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 113 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 167
>pdb|3L0X|B Chain B, Structure Of Split Yeast Pcna
Length = 94
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK +
Sbjct: 35 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 93
Query: 61 D 61
+
Sbjct: 94 E 94
>pdb|3K4X|A Chain A, Eukaryotic Sliding Clamp Pcna Bound To Dna
Length = 798
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 205 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 259
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 472 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 526
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 739 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 793
>pdb|3GPM|A Chain A, Structure Of The Trimeric Form Of The E113g Pcna Mutant
Protein
pdb|3GPN|A Chain A, Structure Of The Non-Trimeric Form Of The E113g Pcna
Mutant Protein
Length = 258
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 199 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 253
>pdb|3V60|B Chain B, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V61|B Chain B, Structure Of S. Cerevisiae Pcna Conjugated To Sumo On
Lysine 164
pdb|3V62|B Chain B, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
pdb|3V62|E Chain E, Structure Of The S. Cerevisiae Srs2 C-Terminal Domain In
Complex With Pcna Conjugated To Sumo On Lysine 164
Length = 258
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 199 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 253
>pdb|2OD8|A Chain A, Structure Of A Peptide Derived From Cdc9 Bound To Pcna
pdb|1PLQ|A Chain A, Crystal Structure Of The Eukaryotic Dna Polymerase
Processivity Factor Pcna
pdb|1PLR|A Chain A, Crystal Structure Of The Eukaryotic Dna Polymerase
Processivity Factor Pcna
Length = 258
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 199 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 253
>pdb|3F1W|A Chain A, Crystal Structure Of A Mutant Proliferating Cell Nuclear
Antigen That Blocks Translesion Synthesis
Length = 258
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 199 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 253
>pdb|3PGE|A Chain A, Structure Of Sumoylated Pcna
Length = 200
Score = 46.6 bits (109), Expect = 4e-06, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK +
Sbjct: 141 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 199
Query: 61 D 61
+
Sbjct: 200 E 200
>pdb|1SXJ|F Chain F, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
pdb|1SXJ|G Chain G, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
pdb|1SXJ|H Chain H, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 283
Score = 43.5 bits (101), Expect = 3e-05, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61
+PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK ++
Sbjct: 226 QPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDEE 283
>pdb|3LX1|A Chain A, Crystal Structure Analysis Of Pcna1 From Thermococcus
Kodakaraensis Tk0535
Length = 255
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
++E + RYL + K +++V L ++PL +E+ I D G + + LAP++E
Sbjct: 191 VEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTFLLAPRVE 248
>pdb|3IFV|A Chain A, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3IFV|B Chain B, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3IFV|C Chain C, Crystal Structure Of The Haloferax Volcanii Proliferating
Cell Nuclear Antigen
pdb|3HI8|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|B Chain B, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|C Chain C, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|D Chain D, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|E Chain E, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
pdb|3HI8|F Chain F, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From Haloferax Volcanii
Length = 247
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
F+ YL + KA P +V + + + P+ + ++I + +G I Y LAP+I+SD
Sbjct: 195 FSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAEGMGTITYMLAPRIQSD 247
>pdb|3LX2|A Chain A, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
pdb|3LX2|B Chain B, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
pdb|3LX2|C Chain C, Crystal Structure Analysis Of Pcna From Thermococcus
Kodakaraensis Tk0582
Length = 259
Score = 34.7 bits (78), Expect = 0.016, Method: Composition-based stats.
Identities = 11/50 (22%), Positives = 30/50 (60%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
+ YL + ++ +++V + D+PL++++ + D G + + +AP++E
Sbjct: 200 YGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRVE 249
>pdb|2IX2|B Chain B, Crystal Structure Of The Heterotrimeric Pcna From
Sulfolobus Solfataricus
Length = 245
Score = 30.0 bits (66), Expect = 0.37, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
VS ++ Y+ N K S+ + L +PL + FK+ G+ +Y+AP+ +
Sbjct: 192 VSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 245
>pdb|2NTI|E Chain E, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|B Chain B, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2NTI|H Chain H, Crystal Structure Of Pcna123 Heterotrimer.
pdb|2IO4|B Chain B, Crystal Structure Of Pcna12 Dimer From Sulfolobus
Solfataricus.
pdb|2IO4|D Chain D, Crystal Structure Of Pcna12 Dimer From Sulfolobus
Solfataricus
Length = 246
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
VS ++ Y+ N K S+ + L +PL + FK+ G+ +Y+AP+ +
Sbjct: 193 VSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 246
>pdb|3FDS|D Chain D, Structural Insight Into Recruitment Of Translesion Dna
Polymerase Dpo4 To Sliding Clamp Pcna
Length = 245
Score = 30.0 bits (66), Expect = 0.39, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
VS ++ Y+ N K S+ + L +PL + FK+ G+ +Y+AP+
Sbjct: 193 VSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPR 244
>pdb|2IZO|B Chain B, Structure Of An Archaeal Pcna1-Pcna2-Fen1 Complex
Length = 246
Score = 29.6 bits (65), Expect = 0.40, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
VS ++ Y+ N K S+ + L +PL + FK+ G+ +Y+AP+ +
Sbjct: 193 VSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 246
>pdb|3AIX|A Chain A, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (I222)
pdb|3AIZ|C Chain C, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
pdb|3AIZ|D Chain D, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
Length = 246
Score = 29.6 bits (65), Expect = 0.47, Method: Composition-based stats.
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
+ Y++N +K S+ V ++ +PL + + + G+ +Y+AP+ E
Sbjct: 197 YGLEYVVNTSKMRKPSDTVEIAFGSQIPLKLRYNLPQGGYADFYIAPRAE 246
>pdb|1UD9|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
pdb|1UD9|B Chain B, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
pdb|1UD9|C Chain C, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
pdb|1UD9|D Chain D, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) Homolog From Sulfolobus Tokodaii
Length = 245
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
+ YL + LS+ V ++ + P+ +EF ++ G + Y LAPK+
Sbjct: 196 YDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKL 244
>pdb|2HII|B Chain B, Heterotrimeric Pcna Sliding Clamp
pdb|2HII|Y Chain Y, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|B Chain B, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|M Chain M, Heterotrimeric Pcna Sliding Clamp
pdb|2HIK|Y Chain Y, Heterotrimeric Pcna Sliding Clamp
Length = 245
Score = 29.3 bits (64), Expect = 0.61, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 27/54 (50%)
Query: 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
VS ++ Y+ N K S+ L +PL + FK+ G+ +Y+AP+ +
Sbjct: 192 VSSSYGXEYVANTTKXRRASDSXELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD 245
>pdb|3AIX|B Chain B, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (I222)
pdb|3AIZ|A Chain A, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
pdb|3AIZ|B Chain B, Crystal Structure Of Pcna2-Pcna3 Complex From Sulfolobus
Tokodaii (P21212)
Length = 248
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
++ P ++ L + K +S V + ++P+ +E D G + +++AP++
Sbjct: 192 VESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQLIFWIAPRL 248
>pdb|1RWZ|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
(Pcna) From A. Fulgidus
pdb|1RXM|A Chain A, C-Terminal Region Of Fen-1 Bound To A. Fulgidus Pcna
pdb|1RXZ|A Chain A, C-Terminal Region Of A. Fulgidus Fen-1 Complexed With A.
Fulgidus Pcna
pdb|3P83|A Chain A, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|B Chain B, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus.
pdb|3P83|C Chain C, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
Fulgidus
Length = 245
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFK-IDDIGHIRYYLAPKIESD 60
F+ YL F K A + + + + + P+ + F+ + + Y LAP+IES+
Sbjct: 193 FSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIESE 245
>pdb|3BI6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd352396
pdb|3BIZ|A Chain A, Wee1 Kinase Complex With Inhibitor Pd331618
pdb|3CQE|A Chain A, Wee1 Kinase Complex With Inhibitor Pd074291
pdb|3CR0|A Chain A, Wee1 Kinase Complex With Inhibitor Pd259_809
Length = 287
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 39 VEFKIDDIGHIRYYLAPKIESDDN 62
V FKI D+GH+ +P++E D+
Sbjct: 169 VMFKIGDLGHVTRISSPQVEEGDS 192
>pdb|2IN6|A Chain A, Wee1 Kinase Complex With Inhibitor Pd311839
pdb|2IO6|A Chain A, Wee1 Kinase Complexed With Inhibitor Pd330961
Length = 287
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 39 VEFKIDDIGHIRYYLAPKIESDDN 62
V FKI D+GH+ +P++E D+
Sbjct: 169 VMFKIGDLGHVTRISSPQVEEGDS 192
>pdb|1X8B|A Chain A, Structure Of Human Wee1a Kinase: Kinase Domain Complexed
With Inhibitor Pd0407824
Length = 289
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 39 VEFKIDDIGHIRYYLAPKIESDDN 62
V FKI D+GH+ +P++E D+
Sbjct: 171 VMFKIGDLGHVTRISSPQVEEGDS 194
>pdb|2Z2W|A Chain A, Humand Wee1 Kinase Complexed With Inhibitor Pf0335770
Length = 285
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 39 VEFKIDDIGHIRYYLAPKIESDDN 62
V FKI D+GH+ +P++E D+
Sbjct: 167 VMFKIGDLGHVTRISSPQVEEGDS 190
>pdb|2FFC|A Chain A, Crystal Structure Of Plasmodium Vivax
Orotidine-Monophosphate- Decarboxyl Ump Bound
Length = 353
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 9 FACRYLLNFAKAAP--------LSNQVCLSMSLDVPLVVEFKIDDIG----HIRYYLAPK 56
+A Y +NFA P L N L+VP +++ K++DIG H R ++
Sbjct: 128 YALAYKMNFAFYLPYGSLGVDVLKNVFDYLHHLNVPTILDIKMNDIGNTVKHYRKFIFDY 187
Query: 57 IESD 60
+ SD
Sbjct: 188 LRSD 191
>pdb|2GUU|A Chain A, Crystal Structure Of Plasmodium Vivax Orotidine
5-Monophosphate Decarboxylase With 6-Aza-Ump Bound
Length = 353
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 12/64 (18%)
Query: 9 FACRYLLNFAKAAP--------LSNQVCLSMSLDVPLVVEFKIDDIG----HIRYYLAPK 56
+A Y +NFA P L N L+VP +++ K++DIG H R ++
Sbjct: 128 YALAYKMNFAFYLPYGSLGVDVLKNVFDYLHHLNVPTILDIKMNDIGNTVKHYRKFIFDY 187
Query: 57 IESD 60
+ SD
Sbjct: 188 LRSD 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,688,987
Number of Sequences: 62578
Number of extensions: 46174
Number of successful extensions: 100
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 35
length of query: 62
length of database: 14,973,337
effective HSP length: 33
effective length of query: 29
effective length of database: 12,908,263
effective search space: 374339627
effective search space used: 374339627
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)