BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5572
(62 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P17917|PCNA_DROME Proliferating cell nuclear antigen OS=Drosophila melanogaster
GN=mus209 PE=1 SV=2
Length = 260
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 49/62 (79%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
MQEPV+L FACRYL F KA PLS QV LSM DVPLVVE+ I D+GHIRYYLAPKIE +
Sbjct: 199 MQEPVTLTFACRYLNAFTKATPLSTQVQLSMCADVPLVVEYAIKDLGHIRYYLAPKIEDN 258
Query: 61 DN 62
+
Sbjct: 259 ET 260
>sp|O16852|PCNA_SARCR Proliferating cell nuclear antigen OS=Sarcophaga crassipalpis
GN=PCNA PE=3 SV=1
Length = 260
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
MQEPV+L FACRYL F KA PLS QV LSM DVPLVVE+ I ++GHIRYYLAPKIE D
Sbjct: 199 MQEPVTLTFACRYLNAFTKATPLSAQVQLSMCADVPLVVEYAIKELGHIRYYLAPKIEDD 258
Query: 61 DN 62
++
Sbjct: 259 ES 260
>sp|O01377|PCNA_BOMMO Proliferating cell nuclear antigen OS=Bombyx mori GN=PCNA PE=2 SV=1
Length = 260
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 51/62 (82%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M+EPV+L FAC+YL F KA LS QV LSMS DVPLVVE++I DIGHIRYYLAPKIE +
Sbjct: 199 MEEPVTLTFACQYLNYFTKATSLSPQVQLSMSADVPLVVEYRIPDIGHIRYYLAPKIEEE 258
Query: 61 DN 62
D+
Sbjct: 259 DS 260
>sp|P61258|PCNA_MACFA Proliferating cell nuclear antigen OS=Macaca fascicularis GN=PCNA
PE=2 SV=1
Length = 261
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 48/62 (77%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS+ V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 DN 62
+
Sbjct: 259 EG 260
>sp|P12004|PCNA_HUMAN Proliferating cell nuclear antigen OS=Homo sapiens GN=PCNA PE=1
SV=1
Length = 261
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 48/62 (77%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS+ V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 DN 62
+
Sbjct: 259 EG 260
>sp|P57761|PCNA_CRIGR Proliferating cell nuclear antigen OS=Cricetulus griseus GN=PCNA
PE=1 SV=1
Length = 261
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 47/62 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSPTVTLSMSTDVPLVVEYKISDMGHLKYYLAPKIEDE 258
Query: 61 DN 62
+
Sbjct: 259 EG 260
>sp|P17070|PCNA_ORYSJ Proliferating cell nuclear antigen OS=Oryza sativa subsp. japonica
GN=Os02g0805200 PE=2 SV=2
Length = 263
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 38/61 (62%), Positives = 52/61 (85%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
MQEPVSL FA RY+ +F KA+PLS QV +S+S ++P+VVE+KI ++G+IR+YLAPKIE D
Sbjct: 199 MQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|P24314|PCNA_CATRO Proliferating cell nuclear antigen OS=Catharanthus roseus PE=2 SV=1
Length = 268
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 50/61 (81%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPVSL FA RYL +F KA PLSN V +S+S ++P+VVE+KI ++G+IR+YLAPKIE D
Sbjct: 199 MNEPVSLTFALRYLNSFTKATPLSNNVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 258
Query: 61 D 61
D
Sbjct: 259 D 259
>sp|P04961|PCNA_RAT Proliferating cell nuclear antigen OS=Rattus norvegicus GN=Pcna
PE=1 SV=1
Length = 261
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 47/62 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 DN 62
+
Sbjct: 259 EG 260
>sp|Q3ZBW4|PCNA_BOVIN Proliferating cell nuclear antigen OS=Bos taurus GN=PCNA PE=2 SV=1
Length = 261
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 47/62 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 DN 62
+
Sbjct: 259 EG 260
>sp|P17918|PCNA_MOUSE Proliferating cell nuclear antigen OS=Mus musculus GN=Pcna PE=1
SV=2
Length = 261
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 47/61 (77%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVHLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|Q9DEA3|PCNA_CHICK Proliferating cell nuclear antigen OS=Gallus gallus GN=PCNA PE=1
SV=1
Length = 262
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 45/58 (77%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
M EPV L FA RYL F KA PLS V LSMS DVPLVVE+KI D+GH++YYLAPKIE
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIE 256
>sp|Q00265|PCNA2_DAUCA Proliferating cell nuclear antigen large form OS=Daucus carota PE=2
SV=1
Length = 365
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 51/61 (83%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
MQE VSL FA RY+ +F KA PL+NQV +S+S ++P+VVE+KI ++G+IRYYLAPKIE +
Sbjct: 199 MQETVSLTFALRYMNSFTKATPLANQVTISLSSELPVVVEYKIAEMGYIRYYLAPKIEEE 258
Query: 61 D 61
D
Sbjct: 259 D 259
>sp|Q9DDF1|PCNA_COTJA Proliferating cell nuclear antigen OS=Coturnix coturnix japonica
GN=PCNA PE=2 SV=1
Length = 262
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 44/58 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
M EPV L FA RYL F KA PLS V LSMS DVPLVVE+KI D+GH +YYLAPKIE
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSPTVTLSMSADVPLVVEYKIADMGHXKYYLAPKIE 256
>sp|P53358|PCNA_STYCL Proliferating cell nuclear antigen OS=Styela clava GN=PCNA PE=2
SV=1
Length = 264
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 50/61 (81%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
+ EPV L FA +YL FAKA+PLS VCLSMS +VPLVVE+K+ D+GHI+Y+LAPKIE +
Sbjct: 200 ISEPVQLTFAIKYLNLFAKASPLSPSVCLSMSNNVPLVVEYKVADMGHIKYFLAPKIEDE 259
Query: 61 D 61
+
Sbjct: 260 E 260
>sp|Q43266|PCNA_MAIZE Proliferating cell nuclear antigen OS=Zea mays GN=PCNA PE=2 SV=1
Length = 263
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 51/61 (83%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
MQEPVSL FA RY+ +F KA+ LS QV +S+S ++P+VVE+KI ++G+IR+YLAPKIE D
Sbjct: 199 MQEPVSLTFALRYMNSFTKASSLSEQVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEDD 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|O82797|PCNA_TOBAC Proliferating cell nuclear antigen OS=Nicotiana tabacum GN=PCNA
PE=2 SV=1
Length = 264
Score = 83.2 bits (204), Expect = 5e-16, Method: Composition-based stats.
Identities = 38/61 (62%), Positives = 50/61 (81%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPVSL FA RYL +F KA PLSN V +S+S ++P+VVE+KI ++G+IR+YLAPKIE D
Sbjct: 199 MNEPVSLTFALRYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEED 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|Q9MAY3|PCNA_POPNI Proliferating cell nuclear antigen OS=Populus nigra GN=PCNA PE=2
SV=1
Length = 264
Score = 82.8 bits (203), Expect = 6e-16, Method: Composition-based stats.
Identities = 36/61 (59%), Positives = 50/61 (81%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPVS+ FA RY+ +F KA PLSN V +SMS D+P+VVE+KI ++G++R+YLAPK+E D
Sbjct: 199 MNEPVSMTFALRYMNSFTKATPLSNTVTISMSPDLPVVVEYKIAEMGYVRFYLAPKMEED 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|Q9M7Q7|PCNA1_ARATH Proliferating cellular nuclear antigen 1 OS=Arabidopsis thaliana
GN=PCNA PE=1 SV=2
Length = 263
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 53/62 (85%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M+EPVSL+FA RY+ +F KA PLS+ V +S+S ++P+VVE+K+ ++G+IRYYLAPKIE +
Sbjct: 199 MKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEE 258
Query: 61 DN 62
++
Sbjct: 259 ED 260
>sp|P18248|PCNA_XENLA Proliferating cell nuclear antigen OS=Xenopus laevis GN=pcna PE=2
SV=1
Length = 261
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 46/61 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS V LSMS D+PLVVE+KI D+ H++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSPTVILSMSADIPLVVEYKIADMEHVKYYLAPKIEDE 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|Q6B6N4|PCNA_HAPBU Proliferating cell nuclear antigen OS=Haplochromis burtoni GN=pcna
PE=2 SV=1
Length = 260
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 45/60 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA YL F KA PLS V LSMS D+PLVVE+KI D+GHI+YYLAPKI+ +
Sbjct: 199 MNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHIKYYLAPKIDEE 258
>sp|Q43124|PCNA_BRANA Proliferating cell nuclear antigen OS=Brassica napus PE=2 SV=1
Length = 263
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/61 (59%), Positives = 51/61 (83%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPVSL+FA RY+ +F KA PLS+ V +S+S ++P+VVE+K+ ++G+IRYYLAPKIE D
Sbjct: 199 MNEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEED 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|P22177|PCNA_SOYBN Proliferating cell nuclear antigen (Fragment) OS=Glycine max PE=2
SV=1
Length = 236
Score = 81.6 bits (200), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/61 (59%), Positives = 50/61 (81%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPVSL FA RY+ +F KA PLSN V +S+S ++P+VVE+KI ++G++R+YLAPKIE D
Sbjct: 169 MNEPVSLTFALRYMNSFTKATPLSNTVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEED 228
Query: 61 D 61
+
Sbjct: 229 E 229
>sp|Q9W644|PCNA_ANGJA Proliferating cell nuclear antigen OS=Anguilla japonica GN=pcna
PE=2 SV=1
Length = 260
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 45/60 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA YL F KA PLS V LSMS D+PLVVE+KI D+GH++YYLAPKI+ +
Sbjct: 199 MNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHVKYYLAPKIDEE 258
>sp|Q9PTP1|PCNA_DANRE Proliferating cell nuclear antigen OS=Danio rerio GN=pcna PE=1 SV=2
Length = 260
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 45/60 (75%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA YL F KA PLS V LSMS D+PLVVE+KI D+GH++YYLAPKI+ +
Sbjct: 199 MNEPVQLIFALNYLNFFTKATPLSKTVTLSMSADIPLVVEYKIADMGHVKYYLAPKIDEE 258
>sp|Q9ZW35|PCNA2_ARATH Proliferating cell nuclear antigen 2 OS=Arabidopsis thaliana
GN=At2g29570 PE=1 SV=1
Length = 264
Score = 80.1 bits (196), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 51/62 (82%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPVSL+FA RY+ +F KA PLS V +S+S ++P+VVE+K+ ++G+IRYYLAPKIE +
Sbjct: 199 MNEPVSLSFALRYMNSFTKATPLSETVTISLSSELPVVVEYKVAEMGYIRYYLAPKIEEE 258
Query: 61 DN 62
++
Sbjct: 259 ED 260
>sp|O82134|PCNA_PEA Proliferating cell nuclear antigen OS=Pisum sativum GN=PCNA PE=2
SV=1
Length = 266
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 50/61 (81%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV+L FA RY+ +F KA PLS+ V +S+S ++P+VVE+KI ++G++R+YLAPKIE D
Sbjct: 199 MNEPVALQFALRYMNSFTKATPLSSSVTISLSNELPVVVEYKIAEMGYVRFYLAPKIEED 258
Query: 61 D 61
+
Sbjct: 259 E 259
>sp|Q00268|PCNA1_DAUCA Proliferating cell nuclear antigen OS=Daucus carota PE=3 SV=1
Length = 264
Score = 79.7 bits (195), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/62 (56%), Positives = 52/62 (83%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPVSL FA RY+ +F KA+PLS+ V +S+S ++P+VVE+KI ++G+IR+YLAPKIE +
Sbjct: 199 MNEPVSLTFALRYMNSFTKASPLSSTVTISLSSELPVVVEYKIAEMGYIRFYLAPKIEEE 258
Query: 61 DN 62
++
Sbjct: 259 ED 260
>sp|Q54K47|PCNA_DICDI Proliferating cell nuclear antigen OS=Dictyostelium discoideum
GN=pcna PE=3 SV=1
Length = 258
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 45/57 (78%)
Query: 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
+EPV LNFA ++L NF KA PLS V LSMS +P+VVE+KIDD+G + ++LAPKIE
Sbjct: 202 KEPVVLNFALKFLSNFTKATPLSPMVTLSMSEGIPVVVEYKIDDLGFLGFFLAPKIE 258
>sp|O02115|PCNA_CAEEL Proliferating cell nuclear antigen OS=Caenorhabditis elegans
GN=pcn-1 PE=1 SV=3
Length = 263
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 50/62 (80%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
+++PV++NF+ +Y+ F KA LS++V LS+ DVP+VVE+ I++ G++R+YLAPKI+ D
Sbjct: 200 VKDPVNVNFSIKYMNQFTKATALSDRVRLSLCNDVPVVVEYPIEENGYLRFYLAPKIDDD 259
Query: 61 DN 62
+N
Sbjct: 260 EN 261
>sp|Q03392|PCNA_SCHPO Proliferating cell nuclear antigen OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pcn1 PE=1 SV=1
Length = 260
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
+ + V+L F+ +YL F KA PL+ +V LSMS DVPL+VE+K++ G +R+YLAPKI +
Sbjct: 199 LTQAVTLTFSLKYLAQFTKATPLATRVTLSMSNDVPLLVEYKMES-GFLRFYLAPKIGEE 257
Query: 61 D 61
D
Sbjct: 258 D 258
>sp|P11038|PCNA_NPVAC Probable DNA polymerase sliding clamp OS=Autographa californica
nuclear polyhedrosis virus GN=PCNA PE=2 SV=1
Length = 256
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61
++ V+ FA YL +FAKAAPL+ V + MS ++P +E+ I D+G + +LAPKI ++D
Sbjct: 193 KQTVTHTFAGDYLCHFAKAAPLAPTVTIYMSEELPFKLEYCIKDVGVLACFLAPKIVNND 252
>sp|O10308|PCNA_NPVOP Probable DNA polymerase sliding clamp OS=Orgyia pseudotsugata
multicapsid polyhedrosis virus GN=PCNA PE=3 SV=1
Length = 249
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 59
Q P++ FAC YL A+A+ LS V + M +PL + F++ +G + YLAP++ S
Sbjct: 186 QRPLTQAFACCYLNKLARASALSETVDVCMDASMPLRLRFRLGPLGALDLYLAPRVPS 243
>sp|P15873|PCNA_YEAST Proliferating cell nuclear antigen OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL30 PE=1 SV=1
Length = 258
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 199 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPK 253
>sp|Q8PX25|PCNA_METMA DNA polymerase sliding clamp OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=pcn PE=3 SV=1
Length = 245
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
F+ YL + K N+V LS+ D P++++F+I + G I Y LAP+IESD
Sbjct: 193 FSLDYLTDIVKPTNKVNEVTLSLGRDFPILIDFEIANGAGRISYLLAPRIESD 245
>sp|Q8TUF7|PCNA_METAC DNA polymerase sliding clamp OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=pcn PE=3
SV=1
Length = 245
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
F+ YL + K N+V LS+ D P++++F+I + G I Y LAP+IESD
Sbjct: 193 FSLDYLTDIVKPTNKVNEVTLSLGRDFPILIDFEIANGAGRISYLLAPRIESD 245
>sp|Q46E39|PCNA_METBF DNA polymerase sliding clamp OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=pcn PE=3 SV=1
Length = 245
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
F+ YL + K N+V LS+ D P++++F+I + G I Y LAP+IESD
Sbjct: 193 FSLDYLTDIVKPTNKVNEVTLSLGKDFPILIDFEIANGSGRISYLLAPRIESD 245
>sp|O41056|PCNA2_PBCV1 Probable DNA polymerase sliding clamp 2 OS=Paramecium bursaria
Chlorella virus 1 GN=A574L PE=3 SV=1
Length = 264
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKID--DIGHIRYYLAPKIESD 60
++ FA RYL+ FAKAA +S +V + + D P + E+ D I ++LAPK++ D
Sbjct: 201 LTCEFATRYLMTFAKAAGISKRVVIKLLDDQPGIFEYVFDAESDSKISFFLAPKVKDD 258
>sp|Q12U18|PCNA_METBU DNA polymerase sliding clamp OS=Methanococcoides burtonii (strain
DSM 6242) GN=pcn PE=3 SV=1
Length = 245
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
F+ YL + K A SN++ L + D P+ + F I + G I Y LAP+IESD
Sbjct: 193 FSLDYLSDIIKPASKSNEISLHLGNDFPIKINFSIANGKGTIGYLLAPRIESD 245
>sp|A0B7Y8|PCNA_METTP DNA polymerase sliding clamp OS=Methanosaeta thermophila (strain
DSM 6194 / PT) GN=pcn PE=3 SV=1
Length = 244
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 31/52 (59%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
F+ YL + +K+ + +V L + +D PL + F + D H+ Y LAP+IE +
Sbjct: 193 FSLDYLSDMSKSIGKAPEVKLEIGIDYPLRISFMLKDNVHVSYLLAPRIEQE 244
>sp|B8GG80|PCNA_METPE DNA polymerase sliding clamp OS=Methanosphaerula palustris (strain
ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pcn PE=3 SV=1
Length = 247
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
F+ YL + K + +V +S+ +D P+ F I D GH+ Y LAP+IE+D
Sbjct: 195 FSLDYLKDMGKTMSKAEKVEISLGIDHPVEFTFDIADGKGHVMYLLAPRIEAD 247
>sp|Q8ZTY0|PCNA1_PYRAE DNA polymerase sliding clamp A OS=Pyrobaculum aerophilum (strain
ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=pcnA PE=3 SV=1
Length = 249
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 1 MQEPVSLNFACRYLLNF-AKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
++EP S F+ YL++ +K + +S+ V + ++ P+ + F I G I Y++AP++E
Sbjct: 191 VKEPASARFSLEYLVDITSKTSKISDIVTIELATAKPIYLSFDIPAGGKISYFIAPRVE 249
>sp|Q9HN45|PCNA_HALSA DNA polymerase sliding clamp OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=pcn PE=3 SV=1
Length = 247
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDI-GHIRYYLAPKIESD 60
F+ YL + KA P + +V L + + P+ + F I D GH+ Y LAP+I+S+
Sbjct: 195 FSLDYLKDMNKAIPTTAEVELELGDEFPIKLHFDIADAQGHVTYMLAPRIQSN 247
>sp|B0R7F7|PCNA_HALS3 DNA polymerase sliding clamp OS=Halobacterium salinarum (strain
ATCC 29341 / DSM 671 / R1) GN=pcn PE=3 SV=1
Length = 247
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDI-GHIRYYLAPKIESD 60
F+ YL + KA P + +V L + + P+ + F I D GH+ Y LAP+I+S+
Sbjct: 195 FSLDYLKDMNKAIPTTAEVELELGDEFPIKLHFDIADAQGHVTYMLAPRIQSN 247
>sp|A9A2X4|PCNA_NITMS DNA polymerase sliding clamp OS=Nitrosopumilus maritimus (strain
SCM1) GN=pcn PE=3 SV=1
Length = 248
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 36 PLVVEFKIDDIGHIRYYLAPKIES 59
PL +EFK+ +IG I +YLAP++ES
Sbjct: 225 PLRIEFKVANIGRIHFYLAPRVES 248
>sp|Q5JF32|PCNA1_PYRKO DNA polymerase sliding clamp 1 OS=Pyrococcus kodakaraensis (strain
ATCC BAA-918 / JCM 12380 / KOD1) GN=pcn1 PE=1 SV=1
Length = 249
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
++E + RYL + K +++V L ++PL +E+ I D G + + LAP++E
Sbjct: 191 VEEETKSAYGIRYLSDMVKGIGKADEVILRFGNEMPLQMEYMIRDEGRLTFLLAPRVE 248
>sp|Q2FNX1|PCNA_METHJ DNA polymerase sliding clamp OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=pcn PE=3 SV=1
Length = 247
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
EP F+ YL + K + +V + + +D P+ F+I G + Y LAP+IE+D
Sbjct: 189 EPAKSLFSIDYLKDMGKVMSHAEKVTIDLGVDHPVKFSFEIAGGNGQVEYLLAPRIEAD 247
>sp|A0RXH7|PCNA_CENSY DNA polymerase sliding clamp OS=Cenarchaeum symbiosum (strain A)
GN=pcn PE=3 SV=1
Length = 248
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 36 PLVVEFKIDDIGHIRYYLAPKIES 59
PL VEFK+ +IG I +YLAP++ S
Sbjct: 225 PLRVEFKVANIGRIHFYLAPRVSS 248
>sp|Q84513|PCNA1_PBCV1 Probable DNA polymerase sliding clamp 1 OS=Paramecium bursaria
Chlorella virus 1 GN=A193L PE=3 SV=1
Length = 262
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 31/47 (65%)
Query: 9 FACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAP 55
F+ +YL +F KA+ +S+ V + + PL++++ + +G +++ +AP
Sbjct: 213 FSLKYLTSFCKASGMSSAVEIYLKESYPLILKYTVGSMGALKFVIAP 259
>sp|Q74MV1|PCNA_NANEQ DNA polymerase sliding clamp OS=Nanoarchaeum equitans (strain
Kin4-M) GN=pcn PE=3 SV=2
Length = 249
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
+QE +++ YL FAKAA +S+ L + D PL +E++ D + + LAP+
Sbjct: 192 IQEEAYASYSIDYLKKFAKAADVSDIAILKLKTDYPLWLEYRYLDKMTLIFILAPR 247
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,655,122
Number of Sequences: 539616
Number of extensions: 597815
Number of successful extensions: 976
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 905
Number of HSP's gapped (non-prelim): 80
length of query: 62
length of database: 191,569,459
effective HSP length: 34
effective length of query: 28
effective length of database: 173,222,515
effective search space: 4850230420
effective search space used: 4850230420
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)