Query psy5572
Match_columns 62
No_of_seqs 107 out of 381
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 20:56:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5572.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5572hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pge_A SUMO-modified prolifera 99.9 2E-25 7E-30 146.9 8.1 60 1-61 141-200 (200)
2 3l0w_B Monoubiquitinated proli 99.9 1.4E-24 4.7E-29 138.5 8.1 57 1-58 113-169 (169)
3 3fds_C DNA polymerase sliding 99.8 2.8E-21 9.7E-26 128.6 7.5 56 2-57 193-249 (249)
4 3p91_A Proliferating cell nucl 99.8 4.8E-21 1.6E-25 127.8 8.0 60 2-62 203-262 (265)
5 3ifv_A PCNA; processivity fact 99.8 3.6E-20 1.2E-24 122.3 7.3 58 3-60 189-247 (247)
6 3k4x_A PCNA, proliferating cel 99.8 6.8E-20 2.3E-24 137.2 8.1 60 2-62 206-265 (798)
7 3k4x_A PCNA, proliferating cel 99.8 4.5E-19 1.5E-23 132.8 8.1 59 2-61 740-798 (798)
8 3lx2_A DNA polymerase sliding 99.8 1.1E-18 3.9E-23 115.7 8.5 59 3-61 194-252 (259)
9 3fds_D DNA polymerase sliding 99.8 2.6E-18 8.8E-23 113.1 7.6 56 2-57 190-245 (245)
10 1plq_A Proliferating cell nucl 99.7 1.2E-16 4.2E-21 104.8 8.7 59 2-61 200-258 (258)
11 1u7b_A PCNA, cyclin, prolifera 99.7 1.1E-16 3.7E-21 105.0 8.1 60 2-61 200-259 (261)
12 3a1j_C Cell cycle checkpoint p 99.7 3.7E-17 1.3E-21 108.7 4.6 55 2-56 204-262 (263)
13 2zvv_A PCNA 1, proliferating c 99.6 1.9E-15 6.5E-20 100.6 8.1 57 2-58 220-276 (276)
14 1rwz_A DNA polymerase sliding 99.5 3.7E-14 1.3E-18 92.5 9.0 58 3-60 187-245 (245)
15 1iz5_A Proliferating cell nucl 99.5 3.2E-14 1.1E-18 92.8 8.3 58 2-59 192-249 (249)
16 3aiz_C DNA polymerase sliding 99.5 5.6E-14 1.9E-18 91.5 8.4 56 3-58 191-246 (246)
17 1ud9_A DNA polymerase sliding 99.5 4.7E-14 1.6E-18 91.9 7.2 57 2-58 189-245 (245)
18 3aiz_A DNA polymerase sliding 99.5 5.7E-14 2E-18 91.6 6.7 56 2-57 193-248 (248)
19 2ijx_A DNA polymerase sliding 99.5 8.4E-14 2.9E-18 90.6 6.7 56 2-57 189-244 (244)
20 3a1j_B HHUS1, checkpoint prote 99.2 5.2E-11 1.8E-15 80.1 7.8 52 2-54 226-278 (281)
21 3a1j_A Cell cycle checkpoint c 99.0 1.1E-09 3.9E-14 72.6 6.3 52 1-55 209-264 (266)
22 3g65_A Cell cycle checkpoint c 98.3 3.3E-06 1.1E-10 57.4 7.3 60 1-61 209-270 (296)
23 1vpk_A DNA polymerase III, bet 97.6 8.9E-05 3.1E-09 51.0 5.6 50 3-55 324-374 (378)
24 3d1g_A DNA polymerase III subu 97.5 0.00028 9.7E-09 48.6 6.6 50 3-55 313-363 (366)
25 2avt_A DNA polymerase III beta 97.4 0.00041 1.4E-08 48.0 6.7 51 3-55 323-374 (378)
26 3t0p_A DNA polymerase III, bet 95.6 0.034 1.2E-06 38.3 6.1 53 3-59 314-368 (371)
27 3p16_A DNA polymerase III subu 92.0 0.46 1.6E-05 33.3 6.2 52 3-55 335-403 (408)
28 3p91_A Proliferating cell nucl 90.8 2 6.7E-05 27.9 7.9 55 3-58 69-124 (265)
29 1plq_A Proliferating cell nucl 81.2 8.1 0.00028 24.4 8.3 58 3-60 64-122 (258)
30 1u7b_A PCNA, cyclin, prolifera 78.9 9.8 0.00033 24.0 7.9 56 4-59 65-121 (261)
31 2zvv_A PCNA 1, proliferating c 76.5 13 0.00043 24.0 7.2 55 4-58 85-140 (276)
32 3a1j_C Cell cycle checkpoint p 75.7 13 0.00045 23.8 7.1 48 5-54 68-123 (263)
33 3lx2_A DNA polymerase sliding 72.3 16 0.00056 23.3 8.3 54 3-59 65-118 (259)
34 1iz5_A Proliferating cell nucl 71.9 16 0.00053 22.9 7.1 51 5-58 67-117 (249)
35 3fds_D DNA polymerase sliding 70.3 18 0.0006 22.9 7.6 49 7-59 69-117 (245)
36 3aiz_A DNA polymerase sliding 60.7 28 0.00095 21.7 6.9 54 4-58 65-119 (248)
37 3a1j_B HHUS1, checkpoint prote 55.1 32 0.0011 22.4 5.4 42 3-44 78-119 (281)
38 2jtd_A Myomesin-1, skelemin; i 51.1 9.5 0.00032 23.6 2.1 16 39-54 45-60 (142)
39 3fds_C DNA polymerase sliding 49.1 49 0.0017 21.1 7.7 51 2-53 63-115 (249)
40 3aiz_C DNA polymerase sliding 41.2 62 0.0021 20.0 8.1 38 5-42 65-102 (246)
41 1vpk_A DNA polymerase III, bet 37.0 93 0.0032 20.8 6.1 38 5-45 201-240 (378)
42 3ifv_A PCNA; processivity fact 36.3 33 0.0011 21.7 3.1 35 7-41 66-101 (247)
43 1ud9_A DNA polymerase sliding 33.4 86 0.0029 19.3 6.3 37 5-41 65-102 (245)
44 3pow_A Calreticulin; legume le 32.4 22 0.00075 23.9 1.8 21 33-53 78-105 (265)
45 1jhn_A Calnexin; jelly-roll, b 30.0 31 0.0011 24.8 2.3 21 34-54 100-127 (424)
46 2ijx_A DNA polymerase sliding 28.4 1.1E+02 0.0037 18.9 7.2 37 5-41 65-102 (244)
47 3rg0_A Calreticulin; beta-sand 28.1 28 0.00097 24.2 1.8 22 33-54 73-101 (332)
48 1oo0_A MAGO nashi protein; RNA 26.1 46 0.0016 20.6 2.3 15 38-52 22-36 (147)
49 1gvp_A Gene V protein; DNA-bin 26.1 78 0.0027 17.8 3.2 31 26-56 32-66 (87)
50 2zvm_U DNA polymerase IOTA, pr 26.0 38 0.0013 15.2 1.5 14 46-59 7-20 (26)
51 1cid_A T cell surface glycopro 25.8 21 0.00072 22.8 0.8 45 8-54 45-94 (177)
52 4gq7_A Flocculin, LG-FLO1P; ca 25.2 50 0.0017 21.3 2.5 30 26-55 159-189 (224)
53 4asl_A EPA1P; cell adhesion, l 23.4 65 0.0022 20.5 2.8 30 26-55 194-227 (259)
54 3f2i_A ALR0221 protein; alpha- 22.7 52 0.0018 19.8 2.1 14 44-57 149-162 (172)
55 4gio_A Putative lipoprotein; u 21.6 1.1E+02 0.0038 17.4 3.3 19 26-44 39-57 (107)
56 1rl2_A Protein (ribosomal prot 20.9 1.2E+02 0.004 18.2 3.5 33 24-56 16-48 (137)
57 3gdz_A Arginyl-tRNA synthetase 20.2 53 0.0018 18.5 1.7 21 36-56 73-93 (109)
No 1
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2e-25 Score=146.93 Aligned_cols=60 Identities=33% Similarity=0.786 Sum_probs=55.2
Q ss_pred CCCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCCCC
Q psy5572 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61 (62)
Q Consensus 1 ~~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~e~ 61 (62)
+++|++++||++||++|+||+++|++|+|+|++++||+++|+++ +|+|+|||||||++|+
T Consensus 141 ~~e~v~~~fsl~YL~~f~Ka~~ls~~V~l~l~~~~Pl~l~y~i~-~G~l~f~LAPrie~~~ 200 (200)
T 3pge_A 141 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK-SGFLQFFLAPKFNDEE 200 (200)
T ss_dssp ESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSSCEEEEEEET-TEEEEEEECCCCC---
T ss_pred eCCcceeeEhHHHHHHHhccccCCCeEEEEEcCCCCEEEEEEEC-CEEEEEEECCccCCCC
Confidence 36899999999999999999999999999999999999999997 8999999999999875
No 2
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.91 E-value=1.4e-24 Score=138.50 Aligned_cols=57 Identities=35% Similarity=0.793 Sum_probs=54.8
Q ss_pred CCCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 1 ~~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
+++|++++||++||++|+||+++|++|+|+|++|+||+++|+++ +|+|+||||||+|
T Consensus 113 ~~~~~~~~fsl~yl~~~~ka~~~s~~v~l~~~~~~Pl~~~~~~~-~g~~~~~lAPri~ 169 (169)
T 3l0w_B 113 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK-SGFLQFFLAPKFN 169 (169)
T ss_dssp ESSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSSCEEEEEEET-TEEEEEEECCCCC
T ss_pred cCCcceEEEhHHHHHHHhccccCCCeEEEEEcCCCCEEEEEEEC-CEEEEEEEccccC
Confidence 36899999999999999999999999999999999999999997 8999999999996
No 3
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=99.84 E-value=2.8e-21 Score=128.62 Aligned_cols=56 Identities=16% Similarity=0.401 Sum_probs=54.6
Q ss_pred CCceeeEEehHHHHhhhc-ccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecC
Q psy5572 2 QEPVSLNFACRYLLNFAK-AAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~K-a~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPri 57 (62)
++|++++|+++||++|+| |+++|++|+|+|++++||+++|.++++|+|+||||||+
T Consensus 193 ~~~~~~~fsl~yL~~~~K~a~~ls~~V~i~~~~~~Pl~l~y~i~~~G~l~f~lAPri 249 (249)
T 3fds_C 193 DTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL 249 (249)
T ss_dssp SSCCEEEEEHHHHHHHHHTTTTCCSCEEEEECTTCCEEEEEECTTSCEEEEEECCBC
T ss_pred CCceEEEEEHHHHHHHHhhhcccCCEEEEEecCCcCEEEEEEeCCCcEEEEEEeccC
Confidence 689999999999999999 99999999999999999999999999999999999997
No 4
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=99.84 E-value=4.8e-21 Score=127.83 Aligned_cols=60 Identities=40% Similarity=0.710 Sum_probs=53.8
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCCCCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 62 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~e~~ 62 (62)
.++++.+|+++||++++||+++|++|+|+|+++.||+++|.+ ++|+++||||||+++||+
T Consensus 203 ~e~~~~~F~~~YL~~~~Ka~~ls~~V~i~~~~~~Pl~l~~~i-~~g~~~f~lAPri~~~~~ 262 (265)
T 3p91_A 203 NKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKG-EACVLKFYLAPKFDEEDE 262 (265)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGGCSEEEEEECSSSCEEEEEEE-TTEEEEEEECCBC-----
T ss_pred CCcEEEEEEHHHHHHhhcccccCCEEEEEeCCCccEEEEEEE-CCEEEEEEEcCCCCCccC
Confidence 588999999999999999999999999999999999999999 889999999999998864
No 5
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=99.81 E-value=3.6e-20 Score=122.29 Aligned_cols=58 Identities=31% Similarity=0.606 Sum_probs=52.2
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeC-CCeEEEEEEeecCCCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKID-DIGHIRYYLAPKIESD 60 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~-~~g~l~~~lAPrie~e 60 (62)
++++.+|+++||++++||+++|++|+|+|++++||+++|.++ ++|+++||||||+|+|
T Consensus 189 e~~~~~F~~~YL~~~~Ka~~~s~~V~i~~~~~~Pl~l~~~i~~~~g~~~~~lAPri~~~ 247 (247)
T 3ifv_A 189 GAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAEGMGTITYMLAPRIQSD 247 (247)
T ss_dssp CCCEEEEEHHHHHHHHHHSCTTCEEEEEECBSSCEEEEEEEGGGTEEEEEEECCC----
T ss_pred CeEEEEEeHHHHHHhhhhccCCCEEEEEecCCccEEEEEEEcCCcEEEEEEEeecccCC
Confidence 688999999999999999999999999999999999999998 5799999999999986
No 6
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.80 E-value=6.8e-20 Score=137.16 Aligned_cols=60 Identities=32% Similarity=0.753 Sum_probs=53.0
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCCCCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDDN 62 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~e~~ 62 (62)
++|++++|+++||+.|+||+++|++|+|+|++++||+++|.+ ++|+|+||||||+++||+
T Consensus 206 ~e~~~~~ysl~yL~~~~Ka~~ls~~V~l~~~~~~PL~l~y~i-~~G~l~f~lAPri~~~~~ 265 (798)
T 3k4x_A 206 DQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDL-KSGFLQFFLAPKFNDEGS 265 (798)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEE-TTEEEEEEECCC------
T ss_pred CCceeEEEEHHHHHHhhcccccCCEEEEEeCCCCcEEEEEEE-CCeEEEEEEccCCCCccc
Confidence 689999999999999999999999999999999999999999 889999999999998873
No 7
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication, DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Probab=99.78 E-value=4.5e-19 Score=132.76 Aligned_cols=59 Identities=32% Similarity=0.776 Sum_probs=52.9
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCCCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~e~ 61 (62)
+++++.+|+++||++|+||+++|++|+|+|++++||+++|.+ ++|+|+||||||+++|+
T Consensus 740 ~e~~~~~f~l~YL~~~~Ka~~ls~~V~i~~~~~~Pl~~~y~i-~~G~i~fylAPki~~~~ 798 (798)
T 3k4x_A 740 DQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDL-KSGFLQFFLAPKFNDEE 798 (798)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEE-TTEEEEEEECCC-----
T ss_pred CCceEEEEEHHHHHHHhhhccCCCeEEEEeCCCccEEEEEEE-cceEEEEEECcCCCCCC
Confidence 589999999999999999999999999999999999999999 88999999999999875
No 8
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=99.77 E-value=1.1e-18 Score=115.73 Aligned_cols=59 Identities=19% Similarity=0.553 Sum_probs=54.0
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCCCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~e~ 61 (62)
++++.+|+++||++++||+++|++|+|+|++++|++++|.++++|+++||||||+++..
T Consensus 194 e~~~~~F~~~YL~~~~Ka~~~s~~V~l~~~~~~Pl~l~~~i~~~g~~~y~laP~~~~~~ 252 (259)
T 3lx2_A 194 TKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRVEEGR 252 (259)
T ss_dssp SCEEEEEEHHHHHHHHSSSCTTSEEEEEECTTSCEEEEEEETTTEEEEEEECCCC----
T ss_pred ceEEEEEEHHHHHhhhccccCCCeEEEEeCCCCCEEEEEEeCCCeEEEEEEccccCCCc
Confidence 79999999999999999999999999999999999999999989999999999998753
No 9
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=99.75 E-value=2.6e-18 Score=113.10 Aligned_cols=56 Identities=27% Similarity=0.460 Sum_probs=53.8
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPri 57 (62)
.++++..|+++||++++||+++|++|+|+|+++.|++++|.++++|+++||||||+
T Consensus 190 ~e~~~~~F~~~YL~~~~ka~~~s~~V~i~~~~~~Pl~l~~~i~~~g~~~y~laPr~ 245 (245)
T 3fds_D 190 GADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRA 245 (245)
T ss_dssp ECCCEEEEEHHHHHHGGGGGGTCSEEEEEECTTSCEEEEEECSTTCEEEEEECCCC
T ss_pred cceEEEEEEHHHHHHHhhhcccCCEEEEEecCCccEEEEEEeCCCeEEEEEEeecC
Confidence 36889999999999999999999999999999999999999999999999999996
No 10
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=99.69 E-value=1.2e-16 Score=104.78 Aligned_cols=59 Identities=32% Similarity=0.776 Sum_probs=55.9
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCCCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~e~ 61 (62)
.++++..|+++||.+++||.++|++|+|+|+++.|+.++|.++ +|+++||||||+++||
T Consensus 200 ge~~~i~f~~~yL~~~lka~~~s~~V~i~~~~~~Pl~l~~~~~-~~~~~y~l~P~~~~e~ 258 (258)
T 1plq_A 200 DQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLK-SGFLQFFLAPKFNDEE 258 (258)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGTCSEEEEEECSSSCEEEEEEET-TEEEEEEECCCSSSCC
T ss_pred CCcEEEEEEHHHHHHHhccccCCceEEEEECCCCCEEEEEEEC-CeEEEEEECCcCCCCC
Confidence 4678999999999999999999999999999999999999998 7899999999999875
No 11
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=99.68 E-value=1.1e-16 Score=104.99 Aligned_cols=60 Identities=67% Similarity=1.082 Sum_probs=53.5
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCCCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESDD 61 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~e~ 61 (62)
.++++..|+++||.+|+||.+++++|+|+|+++.|+.++|.++++|+++||||||+++||
T Consensus 200 ~e~~~i~f~~~yL~~~lka~~~s~~V~i~~~~~~P~~l~~~~~~~~~~~y~l~P~i~~e~ 259 (261)
T 1u7b_A 200 NEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDEE 259 (261)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGGCSEEEEEECTTSCEEEEEEETTTEEEEEEECCBC----
T ss_pred CCcEEEEEeHHHHHHHhCcccCCCeEEEEECCCCCEEEEEEeCCCcEEEEEECCcCcccC
Confidence 467899999999999999999999999999999999999999767899999999999876
No 12
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=99.67 E-value=3.7e-17 Score=108.73 Aligned_cols=55 Identities=22% Similarity=0.304 Sum_probs=52.9
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCC-CeE---EEEEEeec
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDD-IGH---IRYYLAPK 56 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~-~g~---l~~~lAPr 56 (62)
+++++++|+++||+.|+||+++|++|+|+++++.||+++|.+.+ +|+ |+||||||
T Consensus 204 ~~~~~~~y~l~yL~~~~ka~~~s~~v~i~~~~~~pL~l~~~i~~~~g~~~~v~f~laP~ 262 (263)
T 3a1j_C 204 NQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCPD 262 (263)
T ss_dssp CSCEEEEEEHHHHTTHHHHHHHCSEEEEEEETTCCEEEEEEEECTTSCEEEEEEEECCC
T ss_pred CChhhcEEeHHHHHHHHhhhhhcCEEEEEECCCeeEEEEEEEecCCCCEEEEEEEEEEC
Confidence 57899999999999999999999999999999999999999987 788 99999998
No 13
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=99.61 E-value=1.9e-15 Score=100.63 Aligned_cols=57 Identities=60% Similarity=1.046 Sum_probs=53.3
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
.++++..|+++||.+++||.+++++|+|+|+++.|+.++|.++++|+++||||||+|
T Consensus 220 ge~~~i~fn~~YL~d~lka~~ls~~V~i~l~~~~Pl~l~~~~~~~g~~~y~laP~i~ 276 (276)
T 2zvv_A 220 KEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIE 276 (276)
T ss_dssp SSCEEEEEEHHHHHHHGGGGGGCSEEEEEECTTSCEEEEEEETTTEEEEEEECCBC-
T ss_pred CCcEEEEEEHHHHHHHhccccCCCEEEEEEcCCceEEEEEEeCCCcEEEEEEccccC
Confidence 467899999999999999999999999999999999999999767899999999986
No 14
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor, replication; HET: DNA; 1.80A {Archaeoglobus fulgidus} SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Probab=99.54 E-value=3.7e-14 Score=92.48 Aligned_cols=58 Identities=26% Similarity=0.472 Sum_probs=53.4
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCC-eEEEEEEeecCCCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDI-GHIRYYLAPKIESD 60 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~-g~l~~~lAPrie~e 60 (62)
++++..|+++||.++.|+.+++++|+|+|+++.|+.++|.++++ |++.|||+||+++|
T Consensus 187 ~~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~~y~i~P~~~~~ 245 (245)
T 1rwz_A 187 GEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIESE 245 (245)
T ss_dssp CCEEEEEEHHHHHHHGGGCCTTCEEEEEECSSSCEEEEEEETTTTEEEEEEECCBCCC-
T ss_pred eeEEEEEeHHHHHHHhhhccCCCeEEEEECCCCCEEEEEEECCCcEEEEEEEccccCCC
Confidence 34899999999999999999999999999999999999999766 89999999999965
No 15
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=99.53 E-value=3.2e-14 Score=92.84 Aligned_cols=58 Identities=26% Similarity=0.556 Sum_probs=52.4
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 59 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~ 59 (62)
.++++..|+++||.++.|+.+++++|+|+|+++.|+.++|.++++|++.||||||+++
T Consensus 192 ge~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~~~ 249 (249)
T 1iz5_A 192 QEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRVEE 249 (249)
T ss_dssp SSCEEEEEEHHHHHHHHTTSCTTCEEEEEECTTCCEEEEEEETTTEEEEEEECCC---
T ss_pred CCceEEEEeHHHHHHHhhhccCCCeEEEEEcCCCCEEEEEEeCCCcEEEEEEccccCC
Confidence 4679999999999999999999999999999999999999997678999999999974
No 16
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=99.52 E-value=5.6e-14 Score=91.52 Aligned_cols=56 Identities=21% Similarity=0.452 Sum_probs=53.2
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
++++..|+++||.++.|+.+++++|+|+|+++.|+.++|.++++|++.||||||+|
T Consensus 191 e~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~~ 246 (246)
T 3aiz_C 191 GDAESVYGLEYVVNTSKMRKPSDTVEIAFGSQIPLKLRYNLPQGGYADFYIAPRAE 246 (246)
T ss_dssp CCEEEEEEHHHHHTTGGGTTTCSEEEEEEETTEEEEEEEEETTTEEEEEEECBCCC
T ss_pred eeEEEEEEHHHHHHHhhhccCCCeEEEEecCCCcEEEEEEeCCCCEEEEEEcccCC
Confidence 57899999999999999999999999999999999999999777999999999986
No 17
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=99.50 E-value=4.7e-14 Score=91.86 Aligned_cols=57 Identities=26% Similarity=0.496 Sum_probs=53.5
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
.++++..|+++||.++.|+.+++++|+|+|+++.|+.++|.+.++|.+.||||||++
T Consensus 189 ge~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~~ 245 (245)
T 1ud9_A 189 NKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKLS 245 (245)
T ss_dssp SSCEEEEEEHHHHHHTGGGGGGCSEEEEEECTTSCEEEEEECGGGCEEEEEECCBCC
T ss_pred CCceeEEEEHHHHHHHhhhcccCCEEEEEEcCCCCEEEEEEeCCCcEEEEEEcccCC
Confidence 467999999999999999999999999999999999999998666899999999986
No 18
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=99.49 E-value=5.7e-14 Score=91.57 Aligned_cols=56 Identities=20% Similarity=0.491 Sum_probs=53.0
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPri 57 (62)
.++++..|+++||.+++|+.+++++|+|+|+++.|+.++|.++++|++.||||||+
T Consensus 193 ge~~~i~fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~i 248 (248)
T 3aiz_A 193 ESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQLIFWIAPRL 248 (248)
T ss_dssp SSCEEEEEEHHHHHHHHHHGGGCSSEEEEEETTEEEEEEEECTTSCEEEEEECCCC
T ss_pred CCceEEEEEHHHHHHHhhhccCCCeEEEEEcCCCCEEEEEEeCCCcEEEEEECCcC
Confidence 46899999999999999999999999999999999999999977789999999996
No 19
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=99.48 E-value=8.4e-14 Score=90.61 Aligned_cols=56 Identities=27% Similarity=0.466 Sum_probs=52.8
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecC
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPri 57 (62)
.++++..|+++||.+++|+.+++++|+|+|+++.|+.++|.++++|++.||||||+
T Consensus 189 ge~~~i~Fn~~yL~d~lk~~~~s~~V~l~~~~~~p~~i~~~~~~~~~~~y~i~P~~ 244 (244)
T 2ijx_A 189 SKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244 (244)
T ss_dssp SSCEEEEEEHHHHHHTGGGGGGCSEEEEEEETTEEEEEEEECGGGCEEEEEECCCC
T ss_pred CCceEEEEEHHHHHHHhhhccCCCEEEEEEcCCCCEEEEEEeCCCcEEEEEECccC
Confidence 46799999999999999999999999999999999999999976689999999996
No 20
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=99.21 E-value=5.2e-11 Score=80.15 Aligned_cols=52 Identities=12% Similarity=0.213 Sum_probs=49.6
Q ss_pred CCceeeEEehHHHHhhhcccCCCceEEEE-eeCCCcEEEEEEeCCCeEEEEEEe
Q psy5572 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLS-MSLDVPLVVEFKIDDIGHIRYYLA 54 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~ls~~V~l~-l~~~~Pl~l~~~l~~~g~l~~~lA 54 (62)
+++++.+|+++||+.|+||.+++++|.+. ++++.||.+ |.+.++|+|+|||+
T Consensus 226 ~~~~sv~~~~k~l~~f~k~~~ls~~v~~~~i~~~~~l~~-y~~~~~g~l~yylp 278 (281)
T 3a1j_B 226 EHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHF-DLLHEDVSLQYFIP 278 (281)
T ss_dssp CCCEEEEEEHHHHHHHHHHCCSCCSEEEEEEETTTEEEE-EEESSSCEEEEEEE
T ss_pred CccEEEEEEHHHHHHhhCcccCCCcEEEEEEeCCceEEE-EEeCCcEEEEEEee
Confidence 47899999999999999999999999999 999999999 99999999999996
No 21
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3ggr_A
Probab=98.97 E-value=1.1e-09 Score=72.63 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=43.5
Q ss_pred CCCceeeEEehHHHHh---hhcccCCCceEEEEee-CCCcEEEEEEeCCCeEEEEEEee
Q psy5572 1 MQEPVSLNFACRYLLN---FAKAAPLSNQVCLSMS-LDVPLVVEFKIDDIGHIRYYLAP 55 (62)
Q Consensus 1 ~~~~~~~~ysl~YL~~---~~Ka~~ls~~V~l~l~-~~~Pl~l~~~l~~~g~l~~~lAP 55 (62)
+++|++.+|+++||+. |+|+++++ |+|.|+ .+.|+.++|. +++++++|+||-
T Consensus 209 ~~~~~~~tFslkyl~~~l~f~~~~~~~--v~i~~~~~g~Pl~~~~~-~~~~~~~f~LAT 264 (266)
T 3a1j_A 209 AQEGVAITFCLKEFRGLLSFAESANLN--LSIHFDAPGRPAIFTIK-DSLLDGHFVLAT 264 (266)
T ss_dssp CCTTCEEEEEHHHHHHHHHHHHHTTCE--EEEEECSTTSCEEEEEE-CSSEEEEEEECC
T ss_pred cCCCCEEEEEHHHHHHHHHHHHhcCCc--EEEEECCCCccEEEEEe-CCcEEEEEEEee
Confidence 3578999999999999 88887665 999996 5999999993 333499999993
No 22
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding clamp, DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Probab=98.26 E-value=3.3e-06 Score=57.40 Aligned_cols=60 Identities=18% Similarity=0.293 Sum_probs=52.1
Q ss_pred CCCceeeEEehHHHHhhhc-ccCCCceEEEEeeC-CCcEEEEEEeCCCeEEEEEEeecCCCCC
Q psy5572 1 MQEPVSLNFACRYLLNFAK-AAPLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAPKIESDD 61 (62)
Q Consensus 1 ~~~~~~~~ysl~YL~~~~K-a~~ls~~V~l~l~~-~~Pl~l~~~l~~~g~l~~~lAPrie~e~ 61 (62)
++++++.+|++++|+.|.. |-.++..|++.|+. +.|+.++|+ .++....|.||++.+++.
T Consensus 209 v~~~~~itf~lKefrail~~ae~~~~~i~i~f~~pG~Pl~~~~~-~~~~~~~fvLaT~~~~~~ 270 (296)
T 3g65_A 209 AQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIK-DSLLDGHFVLATLSDTDS 270 (296)
T ss_dssp CCTTCEEEEEHHHHHHHHHHHHHTTCEEEEECCSTTSCEEEEEE-CSSCEEEEEECCCCSSSC
T ss_pred cCCCcEEEEEHHHHHHHHHHHHhcCCeEEEEECCCCCcEEEEEe-CCcEEEEEEEEECCCCCC
Confidence 3578899999999999996 55678899999995 999999999 467899999999998664
No 23
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=97.65 E-value=8.9e-05 Score=51.01 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=44.7
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEee
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAP 55 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~g~l~~~lAP 55 (62)
++.+..|+.+||.++.|+.. +++|+|+|++. .|+.++.. +++...|+|.|
T Consensus 324 ~~~~i~fN~~yL~d~L~~~~-~~~v~l~~~~~~~p~~i~~~--~~~~~~~limP 374 (378)
T 1vpk_A 324 EDLVIAFNPKFIEDVLKHIE-TEEIEMNFVDSTSPCQINPL--DISGYLYIVMP 374 (378)
T ss_dssp CCEEEEECHHHHHHHHHHCC-SSEEEEEESCTTSCEEEEET--TCCSEEEEECC
T ss_pred CeEEEEEcHHHHHHHHhcCC-CCEEEEEECCCCCCEEEEcC--CCCceEEEEEe
Confidence 46788999999999999998 99999999998 79999986 34678999999
No 24
>3d1g_A DNA polymerase III subunit beta; chemical probe, DNA sliding clamp, DNA replication, rational drug design, antibiotic target, transferase; HET: DNA 322; 1.64A {Escherichia coli} SCOP: d.131.1.1 d.131.1.1 d.131.1.1 PDB: 1mmi_A* 1unn_A* 2pol_A* 3bep_A* 3d1e_A* 3d1f_A* 1ok7_A* 3q4j_A* 3q4k_A* 3qsb_A* 3q4l_A* 2xur_A* 1jql_A* 1jqj_A* 3f1v_A* 3pwe_A*
Probab=97.51 E-value=0.00028 Score=48.59 Aligned_cols=50 Identities=16% Similarity=0.297 Sum_probs=45.0
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEee
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAP 55 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~g~l~~~lAP 55 (62)
++.+-.|+.+||.++.++.. +++|+|+|++. .|+.++.. +++...|+|.|
T Consensus 313 e~~~I~fN~~YL~d~L~~~~-~~~v~l~~~~~~~p~~i~~~--~~~~~~ylvmP 363 (366)
T 3d1g_A 313 AEMEIGFNVSYVLDVLNALK-CENVRMMLTDSVSSVQIEDA--ASQSAAYVVMP 363 (366)
T ss_dssp CCEEEEEEHHHHHHHHHHCC-SSEEEEEECCTTSCEEEEET--TEEEEEEEECC
T ss_pred CcEEEEEcHHHHHHHHhcCC-CCEEEEEECCCCCCEEEEcC--CCCceEEEEEE
Confidence 56789999999999999998 99999999998 79999876 45789999999
No 25
>2avt_A DNA polymerase III beta subunit; beta clamp, sliding clamp, replication, transferase; HET: DNA; 2.00A {Streptococcus pyogenes} PDB: 2awa_A*
Probab=97.44 E-value=0.00041 Score=47.97 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=44.3
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEee
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAP 55 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~g~l~~~lAP 55 (62)
++.+-.|+.+||.++.++.. +++|+|+|++. .|+.++.. ++.+...|+|.|
T Consensus 323 e~~~I~FN~~YL~d~L~~~~-~~~v~l~~~~~~~p~~i~~~-~~~~~~~ylvmP 374 (378)
T 2avt_A 323 SDLTISFNPTYLIESLKAIK-SETVKIHFLSPVRPFTLTPG-DEEESFIQLITP 374 (378)
T ss_dssp CCEEEEECHHHHHHHHHTCC-SSEEEEEECCTTSCEEEEET-TCCSEEEEEECC
T ss_pred CeEEEEEcHHHHHHHHhcCC-CCEEEEEECCCCCCEEEEcC-CCCCceEEEEEe
Confidence 46788999999999999998 99999999998 79999876 332379999999
No 26
>3t0p_A DNA polymerase III, beta subunit; DNA clamp, structural genomics, joint center for structural JCSG, protein structure initiative; HET: DNA MSE; 2.26A {Eubacterium rectale}
Probab=95.58 E-value=0.034 Score=38.30 Aligned_cols=53 Identities=17% Similarity=0.396 Sum_probs=43.0
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEee-cCCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAP-KIES 59 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~g~l~~~lAP-rie~ 59 (62)
++.+-.|..+||.++.++.. +++|+|+|.+. .|+.++= +++...|.|-| |+.+
T Consensus 314 e~~~I~FN~~yLld~L~~~~-~~~v~l~~~~~~~p~~i~~---~~~~~~~lvMPvrl~~ 368 (371)
T 3t0p_A 314 KDIMIGFNPKFFIDALRVID-EEEVNLYMVNPKAPCFIKD---DEGKFIYLILPVNFNT 368 (371)
T ss_dssp CCEEEEECHHHHHHHHTTCC-CSEEEEEESCTTSCEEEEC---TTSCEEEEECCCCC--
T ss_pred CcEEEEEchHHHHHHHhCCC-CCeEEEEECCCCCcEEEEc---CCCCeEEEEcceeccc
Confidence 56788999999999999988 78999999665 6998863 45678999999 6544
No 27
>3p16_A DNA polymerase III subunit beta; DNA polymerase III sliding clamp, transferase; HET: DNA; 2.89A {Mycobacterium tuberculosis} PDB: 3rb9_A*
Probab=92.04 E-value=0.46 Score=33.26 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=40.9
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCC---------e-------EEEEEEee
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDI---------G-------HIRYYLAP 55 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~---------g-------~l~~~lAP 55 (62)
++.+-.|..+||.++.++.. +++|+|+|.+. .|+.++=.-++. | ...|+|=|
T Consensus 335 e~l~I~FN~~YLlD~L~~i~-~e~V~l~~~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~limP 403 (408)
T 3p16_A 335 EPLTIAFNPTYLTDGLSSLR-SERVSFGFTTAGKPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMP 403 (408)
T ss_dssp SCCEEEECHHHHHHHHHHSC-SSEEEEEESCTTSCEEEEEECCC--------------CCSSSEEEEECC
T ss_pred CcEEEEEeHHHHHHHHhccC-CCeEEEEECCCCCcEEEEeCCCCccccccccccccccCCCCcEEEEEEE
Confidence 46788999999999999998 79999999766 799996432221 1 57888888
No 28
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA replication, processivity, sliding; 2.40A {Entamoeba histolytica}
Probab=90.78 E-value=2 Score=27.94 Aligned_cols=55 Identities=13% Similarity=0.120 Sum_probs=40.3
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
++++-..+++-|..+.|...-.+.|+|.+..+ -++.+.|.=.+.+.+.|++. -+|
T Consensus 69 ~~~~igi~l~~L~kiLk~~~~~d~v~i~~~~~~~~l~~~~e~~~~~~i~~~lr-Lid 124 (265)
T 3p91_A 69 KPITLGINLTHLSKILKALDNDCGLILDVKKVDDAVLSITSEGTNKTMKFGLN-LVD 124 (265)
T ss_dssp SCEEEEEEHHHHHHHHTTSCTTSEEEEEECSSSSEEEEEEEC--CCEEEEEEE-CCC
T ss_pred CCeEEEEEHHHHHHHHhhcCCCCEEEEEEcCCCCeEEEEEEeCCCceEEEEEE-ecc
Confidence 45667888999999999888899999999865 48888877443345666654 444
No 29
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear protein, DNA replication, processivity; 2.30A {Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2 PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B* 3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Probab=81.19 E-value=8.1 Score=24.40 Aligned_cols=58 Identities=16% Similarity=0.219 Sum_probs=41.6
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEeecCCCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAPKIESD 60 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~g~l~~~lAPrie~e 60 (62)
+++.-..+++-|..+.|...-.+.|+|.+..+ -++.+.+.-.+.|..+-+-.+-+|.+
T Consensus 64 ~~~~~~i~l~~l~kil~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~~ 122 (258)
T 1plq_A 64 HPVTLGMDLTSLSKILRCGNNTDTLTLIADNTPDSIILLFEDTKKDRIAEYSLKLMDID 122 (258)
T ss_dssp SCEEEEEEHHHHHHHTTCSTTTSEEEEEECSSCSEEEEEEECSSSSCEEEEEEECBCCC
T ss_pred CCeEEEEEHHHHHHHHhcCCCCCEEEEEecCCCCeEEEEEEcCCCCeEEEEEEEcccCC
Confidence 34567778899999998776688899999764 57777776544566666666666543
No 30
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp, DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A 1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A* 3p87_A 3vkx_A*
Probab=78.94 E-value=9.8 Score=24.00 Aligned_cols=56 Identities=11% Similarity=0.116 Sum_probs=40.1
Q ss_pred ceeeEEehHHHHhhhcccCCCceEEEEeeC-CCcEEEEEEeCCCeEEEEEEeecCCC
Q psy5572 4 PVSLNFACRYLLNFAKAAPLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAPKIES 59 (62)
Q Consensus 4 ~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~-~~Pl~l~~~l~~~g~l~~~lAPrie~ 59 (62)
++.-..+++-|..+.|...-.+.|+|.+.. +-++.+.+.-.+.|.++-+-.+-++.
T Consensus 65 ~i~~~i~l~~l~kil~~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlie~ 121 (261)
T 1u7b_A 65 NLAMGVNLTSMSKILKCAGNEDIITLRAEDNADTLALVFEAPNQEKVSDYEMKLMDL 121 (261)
T ss_dssp CEEEEEEHHHHHHHHTTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCCC
T ss_pred CeEEEEEHHHHHHHHhcCCCCCEEEEEecCCCCEEEEEEEcCCCCeEEEEEEECccC
Confidence 456677889999999877668889999975 45787777654455555555555554
No 31
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 2zvw_A
Probab=76.55 E-value=13 Score=23.98 Aligned_cols=55 Identities=9% Similarity=0.097 Sum_probs=38.5
Q ss_pred ceeeEEehHHHHhhhcccCCCceEEEEeeC-CCcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 4 PVSLNFACRYLLNFAKAAPLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 4 ~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~-~~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
++.-..+++-|..+.|...-.+.|+|.+++ +-++.+.+.-.+.+.++-+-.+-+|
T Consensus 85 ~i~~~i~l~~l~kilk~~~~~d~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rLid 140 (276)
T 2zvv_A 85 NLSMGMNLGNMSKMLKCAGNDDIITIKADDGGDTVTFMFESPTQDKIADFEMKLMD 140 (276)
T ss_dssp CEEEEEEHHHHHHHHHTSCTTCEEEEEECTTCSEEEEEEECTTSSCEEEEEEECCC
T ss_pred CEEEEEEHHHHHHHHhhCCCCCeEEEEEcCCCCeEEEEEEeCCCceEEEEEEEccc
Confidence 456677889999999877668889999985 5578777764444444444444444
No 32
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_B 3ggr_C
Probab=75.68 E-value=13 Score=23.83 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=35.5
Q ss_pred eeeEEehHHHHhhhcccCCC----ceEEEEe---eCCCcEEEEEEeCCCe-EEEEEEe
Q psy5572 5 VSLNFACRYLLNFAKAAPLS----NQVCLSM---SLDVPLVVEFKIDDIG-HIRYYLA 54 (62)
Q Consensus 5 ~~~~ysl~YL~~~~Ka~~ls----~~V~l~l---~~~~Pl~l~~~l~~~g-~l~~~lA 54 (62)
.+-..++.-|.++.|..... +.+++++ +++.|+.+.++- +| .-+|-|.
T Consensus 68 ~~~gi~l~~l~k~L~~~~~~~~~~d~~~l~i~~~~~~~~l~l~~e~--~~~~~~~~l~ 123 (263)
T 3a1j_C 68 VTFRINLTVLLDCLSIFGSSPMPGTLTALRMCYQGYGYPLMLFLEE--GGVVTVCKIN 123 (263)
T ss_dssp EEEEEEHHHHHHHHTTTCSCCCTTCCCEEEEEECSTTCCEEEEEEE--TTEEEEEEEC
T ss_pred cEEEEEhHHHHHHHHHhcCCcCCCCceEEEEEECCCCCcEEEEEEe--CCeEEEEEEE
Confidence 67788899999999988877 7677774 447899999883 34 3455543
No 33
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor, trimer, toroidal, DNA replica DNA-binding, DNA binding protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Probab=72.26 E-value=16 Score=23.30 Aligned_cols=54 Identities=19% Similarity=0.205 Sum_probs=38.1
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 59 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~ 59 (62)
+++.-..+++-|..+.|..+-.+.|+|..+++-++.+.+. +.+...|++ +-+|.
T Consensus 65 ~~~~igi~l~~L~kiLk~~~~~d~v~i~~~~~~~l~~~~e--~~~~~~~~~-rLid~ 118 (259)
T 3lx2_A 65 SEEAIAFDLKRFLKVLKLARSRDTLVLRKGGENFLEVGLL--GDENTWFKL-PLIDA 118 (259)
T ss_dssp SCEEEEEEHHHHHHHHTTCCTTCEEEEEECSSSEEEEEEE--SSSEEEEEE-ECCCC
T ss_pred CCEEEEEEHHHHHHHHHhcCCCCEEEEEECCCCEEEEEEe--cCceEEEEE-Eeecc
Confidence 3556677899999999988888999999555577777765 444455554 34443
No 34
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity, sliding clamp, DNA binding protein; 1.80A {Pyrococcus furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A 1ge8_A 1isq_A 3lx1_A*
Probab=71.94 E-value=16 Score=22.92 Aligned_cols=51 Identities=14% Similarity=0.198 Sum_probs=32.3
Q ss_pred eeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 5 ~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
+.-..+++-|..+.|...-.+.|+|.++.+- .+.|.+++.+...| ...-+|
T Consensus 67 ~~~~~~l~~l~kil~~~~~~~~v~i~~~~~~--~l~f~~~~~~~~~~-~~rlid 117 (249)
T 1iz5_A 67 ETIGVNLDHLKKILKRGKAKDTLILKKGEEN--FLEITIQGTATRTF-RVPLID 117 (249)
T ss_dssp EEEEEEHHHHHHHHTTCCTTCEEEEEECSSS--EEEEEEESSSEEEE-EEECBC
T ss_pred eEEEEEHHHHHHHHHhCCCCCEEEEEECCCC--eEEEEEecCCEEEE-EEEccc
Confidence 4556678888888876555788999997644 55555555443333 333444
No 35
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B* 2hik_B 2hii_B* 2izo_B*
Probab=70.28 E-value=18 Score=22.89 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=33.8
Q ss_pred eEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeCCCeEEEEEEeecCCC
Q psy5572 7 LNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIES 59 (62)
Q Consensus 7 ~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPrie~ 59 (62)
-..++.-|..+.|...-.+.|+|.+ ++-++.+.+. +.+ .+-|.-+-+|.
T Consensus 69 ~gi~l~~l~kiL~~~~~~d~v~i~~-~~~~l~~~~~--~~~-~~~~~~rLid~ 117 (245)
T 3fds_D 69 IGFKLEDVNDILKRVLKDDTLILSS-NESKLTLTFD--GEF-TRSFELPLIQV 117 (245)
T ss_dssp EEEEHHHHHHHHTTCCTTCEEEEEE-CSSEEEEEEE--SSS-EEEEEEECCCC
T ss_pred EEEEHHHHHHHHHhcCCCCEEEEEE-eCCEEEEEEe--cCc-eEEEEEEeecC
Confidence 4568899999999877789999999 4556666654 433 34444445553
No 36
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_B*
Probab=60.68 E-value=28 Score=21.72 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=37.0
Q ss_pred ceeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEEEeCCCeEEEEEEeecCC
Q psy5572 4 PVSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEFKIDDIGHIRYYLAPKIE 58 (62)
Q Consensus 4 ~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~~l~~~g~l~~~lAPrie 58 (62)
++.-..+++-|..+.|.. -.+.|+|.++.+ .++.+.+.-.+.|...-+..+-+|
T Consensus 65 ~i~~~~~l~~l~kil~~~-~~~~v~i~~~~~~~~l~~~~~~~~~~~~~~~~~rlid 119 (248)
T 3aiz_A 65 PLGIKININDLKKILGKA-KSKSATVTLEETEAGLKVTVRDEKTGTRSNIYIKGEK 119 (248)
T ss_dssp CEEEEEEHHHHHHHHHTC-SSTTCEEEEEECSSEEEEEEEETTTTEEEEEEEECEE
T ss_pred CeEEEEEHHHHHHHHhhc-CCCEEEEEEeCCCCeEEEEEEeCCCCEEEEEEEEccc
Confidence 345566778888888754 467899999764 577777765556666655555554
No 37
>3a1j_B HHUS1, checkpoint protein HUS1; DNA damage, DNA repair, exonuclease, hydrolase, nuclease, nucleus, phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A {Homo sapiens} PDB: 3g65_C 3ggr_B
Probab=55.09 E-value=32 Score=22.43 Aligned_cols=42 Identities=10% Similarity=0.116 Sum_probs=34.1
Q ss_pred CceeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeC
Q psy5572 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKID 44 (62)
Q Consensus 3 ~~~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~ 44 (62)
+++....+++.|..+.|.+.-++.++|++..+.-..|.|++.
T Consensus 78 n~I~l~v~~~~L~k~Lk~a~n~~~~~ikL~k~~~p~L~fe~~ 119 (281)
T 3a1j_B 78 NEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVE 119 (281)
T ss_dssp CCEEEEEEHHHHHHHGGGGGGEEEEEEEEECSSSCEEEEEEE
T ss_pred CEEEEEEeHHHHHHHHHhcCCCCeEEEEeccCCCCEEEEEEE
Confidence 577788899999999999988999999988775444556554
No 38
>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus}
Probab=51.07 E-value=9.5 Score=23.60 Aligned_cols=16 Identities=19% Similarity=0.648 Sum_probs=13.1
Q ss_pred EEEEeCCCeEEEEEEe
Q psy5572 39 VEFKIDDIGHIRYYLA 54 (62)
Q Consensus 39 l~~~l~~~g~l~~~lA 54 (62)
+.|++-+.|+++|||-
T Consensus 45 l~vEiLEkG~VRfWlQ 60 (142)
T 2jtd_A 45 LAVEILEKGQVRFWMQ 60 (142)
T ss_dssp EEEEEETTTEEEEEEE
T ss_pred hhHHHHhcCcEEEEEE
Confidence 5667778999999983
No 39
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA damage, DNA repair, DNA replica DNA-binding, DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A {Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A 2hik_A 2ix2_A* 2izo_C*
Probab=49.08 E-value=49 Score=21.11 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=35.5
Q ss_pred CCceeeEEehHHHHhhhcccC-CCceEEEEeeCCCcEEEEEEeCCCeEE-EEEE
Q psy5572 2 QEPVSLNFACRYLLNFAKAAP-LSNQVCLSMSLDVPLVVEFKIDDIGHI-RYYL 53 (62)
Q Consensus 2 ~~~~~~~ysl~YL~~~~Ka~~-ls~~V~l~l~~~~Pl~l~~~l~~~g~l-~~~l 53 (62)
+++++--.+++-|.++.|.+. -.+++++. .++-+|.+.|+=.++|.. +|.|
T Consensus 63 d~~~~~gvnl~~l~kiLk~~~~~~d~l~~~-~~~~~l~i~~e~~~~~~~~~~~l 115 (249)
T 3fds_C 63 DSPTSVKLDVSSVKKILSKASSKKATIELT-ETDSGLKIIIRDEKSGAKSTIYI 115 (249)
T ss_dssp SSCEEEEECHHHHHHHHTTCCCSCEEEEEE-ECSSEEEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEEHHHHHHHHHhhCCCCCEEEEe-cCCCEEEEEEEeCCCCEEEEEEE
Confidence 456777888999999999988 67755555 345578888764445544 4444
No 40
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex, replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB: 3aix_A*
Probab=41.19 E-value=62 Score=20.01 Aligned_cols=38 Identities=8% Similarity=0.112 Sum_probs=26.9
Q ss_pred eeeEEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEE
Q psy5572 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFK 42 (62)
Q Consensus 5 ~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~ 42 (62)
+.-.-++.-|..+.+...-.+.|+|.++++-++.+.+.
T Consensus 65 i~~~~~l~~l~kiL~~~~~~~~v~i~~~~~~~l~~~~~ 102 (246)
T 3aiz_C 65 EKVGVKLEDFTDVLKTVTKNDSLYLETDENQNIKVTLD 102 (246)
T ss_dssp EEEEEEHHHHHHHHTTCCTTCEEEEEECSSSCEEEEEE
T ss_pred eEEEEEHHHHHHHHhhCCCCCEEEEEECCCCeEEEEEe
Confidence 44556677777777755557889999954357877775
No 41
>1vpk_A DNA polymerase III, beta subunit; TM0262, structural genomic center for structural genomics, JCSG, protein structure INI PSI, transferase; HET: DNA; 2.00A {Thermotoga maritima} SCOP: d.131.1.1 d.131.1.1 d.131.1.1
Probab=36.99 E-value=93 Score=20.82 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=29.3
Q ss_pred eeeEEehHHHHhhhcccCC-Cc-eEEEEeeCCCcEEEEEEeCC
Q psy5572 5 VSLNFACRYLLNFAKAAPL-SN-QVCLSMSLDVPLVVEFKIDD 45 (62)
Q Consensus 5 ~~~~ysl~YL~~~~Ka~~l-s~-~V~l~l~~~~Pl~l~~~l~~ 45 (62)
.+..+..+||..+.|...- .+ .|+|.++++ ++.|.+++
T Consensus 201 ~~~iip~k~l~el~k~L~~~~~~~V~i~~~~~---~i~f~~~~ 240 (378)
T 1vpk_A 201 ASFLLSLKSMKEVQNVLDNTTEPTITVRYDGR---RVSLSTND 240 (378)
T ss_dssp EEEEEEHHHHHHHHHHHHTCCCSEEEEEECSS---EEEEECSS
T ss_pred ceEEEEchHHHHHHHhhccCCCceEEEEEcCC---EEEEEECC
Confidence 4567888999999988764 45 799999876 67777654
No 42
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication; 2.00A {Haloferax volcanii} PDB: 3hi8_A
Probab=36.26 E-value=33 Score=21.66 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=19.9
Q ss_pred eEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEE
Q psy5572 7 LNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEF 41 (62)
Q Consensus 7 ~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~ 41 (62)
-.-+++-|..+.|.+.-.+.|+|.+..+ .++.+.+
T Consensus 66 ~g~~l~~l~kiL~~~~~~d~v~i~~~~~~~~l~~~~ 101 (247)
T 3ifv_A 66 IGVNLSRLEEVAGMAGAGDLIHLTLDEETRKLNIRI 101 (247)
T ss_dssp EEECHHHHHHHHTTC----CEEECC-------EEEE
T ss_pred EEEEHHHHHHHHhcCCCCCEEEEEEcCCCCEEEEEE
Confidence 4567888999998877788999999764 4565554
No 43
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii} SCOP: d.131.1.2 d.131.1.2
Probab=33.35 E-value=86 Score=19.33 Aligned_cols=37 Identities=14% Similarity=0.191 Sum_probs=24.8
Q ss_pred eeeEEehHHHHhhhcccCCCceEEEEeeCCC-cEEEEE
Q psy5572 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLDV-PLVVEF 41 (62)
Q Consensus 5 ~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~~-Pl~l~~ 41 (62)
+.-.-++.-|..+.+...-.+.|+|.++.+- ++.+.+
T Consensus 65 i~~~~~l~~l~kiL~~~~~~~~v~i~~~~~~~~l~~~~ 102 (245)
T 1ud9_A 65 FKFGFNTQYMSKLLKAAKRKEEIIIDADSPEVVKLTLS 102 (245)
T ss_dssp EEEEEEHHHHHHHHTTCCSCCCEEEEEEETTEEEEEEC
T ss_pred eEEEEEHHHHHHHHhcCCCCCEEEEEEcCCCCEEEEEE
Confidence 4455677777777775555788999997642 455444
No 44
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*
Probab=32.37 E-value=22 Score=23.93 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.1
Q ss_pred CCCcEEEEEEeC-------CCeEEEEEE
Q psy5572 33 LDVPLVVEFKID-------DIGHIRYYL 53 (62)
Q Consensus 33 ~~~Pl~l~~~l~-------~~g~l~~~l 53 (62)
.+.||.++|++. +||+|+++=
T Consensus 78 ~~k~LVvQYeVk~q~~idCGGaYiKLl~ 105 (265)
T 3pow_A 78 KGQTLVVQFTVKHEQNIDCGGGYVKLFP 105 (265)
T ss_dssp TTSCEEEEEEEECTTCCSEEECCEEEEC
T ss_pred CCCCEEEEEEEEeccccccCceEEEeec
Confidence 479999999986 578999864
No 45
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=29.98 E-value=31 Score=24.75 Aligned_cols=21 Identities=14% Similarity=0.428 Sum_probs=17.7
Q ss_pred CCcEEEEEEeC-------CCeEEEEEEe
Q psy5572 34 DVPLVVEFKID-------DIGHIRYYLA 54 (62)
Q Consensus 34 ~~Pl~l~~~l~-------~~g~l~~~lA 54 (62)
+.||.|+|++. +||+|+++=+
T Consensus 100 ~k~LVvQYeVk~q~~idCGGaYiKLl~~ 127 (424)
T 1jhn_A 100 TKPLIVQYEVNFQNGIECGGAYVKLLSK 127 (424)
T ss_dssp SSCEEEEEEECCTTCCSEEECCEEEEBC
T ss_pred CCCEEEEEEEEecccccccceEEEeecC
Confidence 78999999987 5789998854
No 46
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein interaction, PCNA123 heterotr binding protein; HET: DNA; 1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C 2hik_C 2ix2_C*
Probab=28.36 E-value=1.1e+02 Score=18.87 Aligned_cols=37 Identities=14% Similarity=0.257 Sum_probs=25.0
Q ss_pred eeeEEehHHHHhhhcccCCCceEEEEeeCC-CcEEEEE
Q psy5572 5 VSLNFACRYLLNFAKAAPLSNQVCLSMSLD-VPLVVEF 41 (62)
Q Consensus 5 ~~~~ysl~YL~~~~Ka~~ls~~V~l~l~~~-~Pl~l~~ 41 (62)
+.-.-++.-|..+.+...-.+.|+|.++.+ .++.+.+
T Consensus 65 i~~~~~l~~l~kiL~~~~~~~~v~i~~~~~~~~l~~~~ 102 (244)
T 2ijx_A 65 FKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINII 102 (244)
T ss_dssp EEEEEEHHHHHHHHTTCCSSCEEEEEEEETTEEEEEEE
T ss_pred EEEEEEHHHHHHHHhhCCCCCEEEEEecCCCCEEEEEE
Confidence 445567777777777555578899999764 2455444
No 47
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}
Probab=28.10 E-value=28 Score=24.20 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=17.7
Q ss_pred CCCcEEEEEEeC-------CCeEEEEEEe
Q psy5572 33 LDVPLVVEFKID-------DIGHIRYYLA 54 (62)
Q Consensus 33 ~~~Pl~l~~~l~-------~~g~l~~~lA 54 (62)
.+.||.++|++. +||+|+++=+
T Consensus 73 ~~k~LVvQYeVK~e~~idCGGaYiKLl~~ 101 (332)
T 3rg0_A 73 KGQTLVVQFTVKHEQNIDCGGGYVKLFPS 101 (332)
T ss_dssp TTSCEEEEEEEEETTCCSEEECCEEEECS
T ss_pred CCCCEEEEEEEEcccccccCceEEEeecC
Confidence 368999999986 6789998753
No 48
>1oo0_A MAGO nashi protein; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.232.1.1 PDB: 1rk8_B 2x1g_B 1hl6_B 2j0s_C* 2j0q_C* 2hyi_A* 2xb2_C* 3ex7_A* 1p27_A
Probab=26.15 E-value=46 Score=20.65 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=12.1
Q ss_pred EEEEEeCCCeEEEEE
Q psy5572 38 VVEFKIDDIGHIRYY 52 (62)
Q Consensus 38 ~l~~~l~~~g~l~~~ 52 (62)
.++|++..+|.++|.
T Consensus 22 fLEfEfr~dG~lrYa 36 (147)
T 1oo0_A 22 FLEFEFRPDGKLRYA 36 (147)
T ss_dssp EEEEEECTTSEEEEE
T ss_pred EEEEEecCCCeEEEe
Confidence 368888888999985
No 49
>1gvp_A Gene V protein; DNA-binding protein, DNA replication; 1.60A {Escherichia coli} SCOP: b.40.4.7 PDB: 1vqb_A 2gn5_A 1vqj_A 1vqi_A 1vqg_A 1vqh_A 1vqf_A 1yhb_A 1yha_A 2gva_A 2gvb_A 1vqd_A 1vqe_A 1gkh_A 1vqc_A 1ae2_A 1vqa_A 1ae3_A
Probab=26.13 E-value=78 Score=17.83 Aligned_cols=31 Identities=13% Similarity=0.238 Sum_probs=22.6
Q ss_pred eEEEEeeCCCcEEEEEEeCCC----eEEEEEEeec
Q psy5572 26 QVCLSMSLDVPLVVEFKIDDI----GHIRYYLAPK 56 (62)
Q Consensus 26 ~V~l~l~~~~Pl~l~~~l~~~----g~l~~~lAPr 56 (62)
..-+.+|.++|..++..++++ .--.|.|+|.
T Consensus 32 ~a~v~lGG~fp~~~~v~Le~gQppY~~G~Y~ihp~ 66 (87)
T 1gvp_A 32 LCYVDLGNEYPVLVKITLDEGQPAYAPGLYTVHLS 66 (87)
T ss_dssp EEEECCSSSSCEEEEEECCTTCCCCCSEEEEECGG
T ss_pred EEEEEcCCCccEEEEEecCCCCCCCCCceEEEchH
Confidence 456788888999999999864 2346667663
No 50
>2zvm_U DNA polymerase IOTA, proliferating cell nuclear antigen; DNA replication, PCNA, clamp, translesion synthesis, TLS, DN polymerase, complex, PIP-box; HET: DNA; 2.30A {Homo sapiens}
Probab=26.04 E-value=38 Score=15.16 Aligned_cols=14 Identities=43% Similarity=0.890 Sum_probs=10.9
Q ss_pred CeEEEEEEeecCCC
Q psy5572 46 IGHIRYYLAPKIES 59 (62)
Q Consensus 46 ~g~l~~~lAPrie~ 59 (62)
.|-+.|||-|....
T Consensus 7 kg~idfyLt~SlsT 20 (26)
T 2zvm_U 7 KGLIDYYLMPSLST 20 (26)
T ss_pred ccceeEEEccCCCc
Confidence 57899999987543
No 51
>1cid_A T cell surface glycoprotein CD4; 2.80A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.3
Probab=25.83 E-value=21 Score=22.82 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=29.1
Q ss_pred EEehHHHHhhhcccCCCceEEEEeeCCCcEEEEEEeC-----CCeEEEEEEe
Q psy5572 8 NFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKID-----DIGHIRYYLA 54 (62)
Q Consensus 8 ~ysl~YL~~~~Ka~~ls~~V~l~l~~~~Pl~l~~~l~-----~~g~l~~~lA 54 (62)
+|+++ +.=.......+..++.++...||.+...=. |.|.++.+|+
T Consensus 45 tFsl~--n~~vsv~~~~~~~kl~~~~~lpL~l~l~qvl~q~AGSG~ltL~l~ 94 (177)
T 1cid_A 45 TFSLK--NQKVSVQKSTSNPKFQLSETLPLTLQIPQVSLQFAGSGNLTLTLD 94 (177)
T ss_dssp EEEEE--TTEEEEESCCCSSCCEECSBTTCEEEECSCCGGGCEEEEEEEECS
T ss_pred EEEec--cceEEEEeecCCcccccccCccEEEEecccChhhCCceeEEEEec
Confidence 45555 333334445566778899999999887433 5577777665
No 52
>4gq7_A Flocculin, LG-FLO1P; carbohydrate binding domain, PA14 domain, sugar binding PROT; HET: NAG; 2.53A {Saccharomyces pastorianus}
Probab=25.23 E-value=50 Score=21.29 Aligned_cols=30 Identities=3% Similarity=0.119 Sum_probs=19.8
Q ss_pred eEEEEeeCCCcEEEEEEeC-CCeEEEEEEee
Q psy5572 26 QVCLSMSLDVPLVVEFKID-DIGHIRYYLAP 55 (62)
Q Consensus 26 ~V~l~l~~~~Pl~l~~~l~-~~g~l~~~lAP 55 (62)
+|.|.=|.-.||||.|.-. +.|.|.|-+..
T Consensus 159 tv~L~aG~yYPIRI~Y~n~~g~A~l~f~~~~ 189 (224)
T 4gq7_A 159 STYMYAGYYYPIKIVYSNAKALARLPVSVVL 189 (224)
T ss_dssp EEEECTTCBEEEEEEEEECSSCEEECEEEEC
T ss_pred EEEEeCCCEeeEEEEEEeCCCCeEEEEEEEC
Confidence 4444445555999999665 46788876654
No 53
>4asl_A EPA1P; cell adhesion, lectin, tissue invasion, pathogenicity; HET: GAL NGA; 1.24A {Candida glabrata} PDB: 4af9_A* 4afc_A* 4afa_A* 4afb_A* 4a3x_A*
Probab=23.40 E-value=65 Score=20.48 Aligned_cols=30 Identities=7% Similarity=0.245 Sum_probs=20.5
Q ss_pred eEEEEeeCC--CcEEEEEEeC-CCeEEEEEE-ee
Q psy5572 26 QVCLSMSLD--VPLVVEFKID-DIGHIRYYL-AP 55 (62)
Q Consensus 26 ~V~l~l~~~--~Pl~l~~~l~-~~g~l~~~l-AP 55 (62)
..+|.|..+ .|||+.|-=. +.|.|.+.. -|
T Consensus 194 s~~v~L~aG~~Ypiri~y~n~~g~~~l~~~~~~P 227 (259)
T 4asl_A 194 ELTVHLDAGVYYPIRLFYNNREYDGALSFTFKTE 227 (259)
T ss_dssp EEEEEECTTCBEEEEEEEEECSSCEEEEEEEEET
T ss_pred EEEEEecCCCEEEEEEEEEeCCCCcEEEEEEECC
Confidence 455666666 5999999654 467887754 44
No 54
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG, function; 2.00A {Nostoc SP}
Probab=22.67 E-value=52 Score=19.76 Aligned_cols=14 Identities=7% Similarity=0.202 Sum_probs=11.8
Q ss_pred CCCeEEEEEEeecC
Q psy5572 44 DDIGHIRYYLAPKI 57 (62)
Q Consensus 44 ~~~g~l~~~lAPri 57 (62)
.+.|.|.+++.|+.
T Consensus 149 ~g~~~L~w~~~p~~ 162 (172)
T 3f2i_A 149 VGRSQMFWLTPPRY 162 (172)
T ss_dssp TTTCEEEEEECGGG
T ss_pred CCcEEEEEEcChHH
Confidence 35699999999985
No 55
>4gio_A Putative lipoprotein; unknown function; 1.90A {Campylobacter jejuni subsp}
Probab=21.60 E-value=1.1e+02 Score=17.40 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=16.3
Q ss_pred eEEEEeeCCCcEEEEEEeC
Q psy5572 26 QVCLSMSLDVPLVVEFKID 44 (62)
Q Consensus 26 ~V~l~l~~~~Pl~l~~~l~ 44 (62)
+|++.+.++.|..|.|++.
T Consensus 39 ~v~v~~~s~~~~~l~Yrf~ 57 (107)
T 4gio_A 39 EFEVILRSTFAKDVIYKVD 57 (107)
T ss_dssp EEEEEECCSSCEEEEEEEE
T ss_pred EEEEEecCCCceEEEEEEE
Confidence 5778889999999999985
No 56
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=20.94 E-value=1.2e+02 Score=18.24 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=19.4
Q ss_pred CceEEEEeeCCCcEEEEEEeCCCeEEEEEEeec
Q psy5572 24 SNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56 (62)
Q Consensus 24 s~~V~l~l~~~~Pl~l~~~l~~~g~l~~~lAPr 56 (62)
+..+.|+...+.-..+-.-.-.+|..+|.|||.
T Consensus 16 ~~V~~IeyDPnRsA~IAlv~y~dg~k~yIlAp~ 48 (137)
T 1rl2_A 16 GRVATIEYDPNRSANIALINYADGEKRYIIAPK 48 (137)
T ss_dssp EEEEEEEEEGGGTEEEEEEEETTSCEEEEECCT
T ss_pred EEEEEEEECCCCCEEEEEEEeCCCCEEEEEecc
Confidence 445566666666333322111346789999996
No 57
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumo 78578, structural genomics, PSI-2; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=20.18 E-value=53 Score=18.50 Aligned_cols=21 Identities=24% Similarity=0.460 Sum_probs=16.7
Q ss_pred cEEEEEEeCCCeEEEEEEeec
Q psy5572 36 PLVVEFKIDDIGHIRYYLAPK 56 (62)
Q Consensus 36 Pl~l~~~l~~~g~l~~~lAPr 56 (62)
++.=+.++.+.|+|.|+|.|.
T Consensus 73 ~~i~~vevagpGFINf~l~~~ 93 (109)
T 3gdz_A 73 GIANKVEIAGPGFINIFLDPA 93 (109)
T ss_dssp TTEEEEEEETTTEEEEEECHH
T ss_pred CcEeEEEEeCCCeEEEEECHH
Confidence 555577888889999999874
Done!