RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5572
(62 letters)
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating
cell nuclear antigen; replication, DNA damage, DNA
repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Length = 169
Score = 85.8 bits (212), Expect = 1e-23
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK
Sbjct: 113 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFN 169
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication,
DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Length = 200
Score = 85.0 bits (209), Expect = 6e-23
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK +
Sbjct: 141 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 199
Query: 61 D 61
+
Sbjct: 200 E 200
>1u7b_A PCNA, cyclin, proliferating cell nuclear antigen; sliding clamp,
DNA processing, FEN1, PIP- BOX, replication; 1.88A {Homo
sapiens} SCOP: d.131.1.2 d.131.1.2 PDB: 1u76_A 1axc_A
1ul1_A 1vyj_A 1vym_A 1w60_A 2zvk_A* 2zvl_A* 2zvm_A*
3p87_A 3vkx_A*
Length = 261
Score = 77.7 bits (190), Expect = 1e-19
Identities = 41/61 (67%), Positives = 48/61 (78%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M EPV L FA RYL F KA PLS+ V LSMS DVPLVVE+KI D+GH++YYLAPKIE +
Sbjct: 199 MNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKIEDE 258
Query: 61 D 61
+
Sbjct: 259 E 259
>3lx2_A DNA polymerase sliding clamp 2; PCNA, DNA processivity factor,
trimer, toroidal, DNA replica DNA-binding, DNA binding
protein; HET: DNA; 2.40A {Thermococcus kodakarensis}
Length = 259
Score = 77.7 bits (190), Expect = 1e-19
Identities = 11/61 (18%), Positives = 30/61 (49%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
+ YL + ++ +++V + D+PL++++ + D G + + +AP++E
Sbjct: 192 KMTKAKSAYGVAYLEDILRSLADADEVIIRFGFDIPLLLKYMVRDAGEVSFLIAPRVEEG 251
Query: 61 D 61
Sbjct: 252 R 252
>1plq_A Proliferating cell nuclear antigen (PCNA); DNA-binding, nuclear
protein, DNA replication, processivity; 2.30A
{Saccharomyces cerevisiae} SCOP: d.131.1.2 d.131.1.2
PDB: 1plr_A 2od8_A* 1sxj_F* 3f1w_A 3v60_B 3v61_B 3v62_B*
3gpn_A 3gpm_A 3l0w_A 3l0x_A 3l10_A 3pge_B 3l0x_B
Length = 258
Score = 73.4 bits (179), Expect = 4e-18
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK +
Sbjct: 199 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 257
Query: 61 D 61
+
Sbjct: 258 E 258
>2zvv_A PCNA 1, proliferating cellular nuclear antigen 1; protein-peptide
complex, DNA replication, DNA-binding, nucleus, DNA
binding protein; 2.00A {Arabidopsis thaliana} PDB:
2zvw_A
Length = 276
Score = 73.1 bits (178), Expect = 8e-18
Identities = 35/58 (60%), Positives = 50/58 (86%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
M+EPVSL+FA RY+ +F KA PLS+ V +S+S ++P+VVE+K+ ++G+IRYYLAPKIE
Sbjct: 219 MKEPVSLSFALRYMNSFTKATPLSDTVTISLSSELPVVVEYKVAEMGYIRYYLAPKIE 276
>3aiz_C DNA polymerase sliding clamp C; protein-protein complex,
replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB:
3aix_A*
Length = 246
Score = 71.5 bits (174), Expect = 2e-17
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
+ Y++N +K S+ V ++ +PL + + + G+ +Y+AP+ E
Sbjct: 189 EGGDAESVYGLEYVVNTSKMRKPSDTVEIAFGSQIPLKLRYNLPQGGYADFYIAPRAE 246
>3aiz_A DNA polymerase sliding clamp B; protein-protein complex,
replication; HET: DNA; 2.80A {Sulfolobus tokodaii} PDB:
3aix_B*
Length = 248
Score = 71.5 bits (174), Expect = 2e-17
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
++ P ++ L + K +S V + ++P+ +E D G + +++AP++
Sbjct: 192 VESPSKAVYSIEVLKDVFKVTSISQNVTVGFGNNIPMKIEVPTDSGGQLIFWIAPRL 248
>3k4x_A PCNA, proliferating cell nuclear antigen; DNA replication,
DNA-binding; HET: DNA; 2.98A {Saccharomyces cerevisiae}
Length = 798
Score = 72.7 bits (177), Expect = 2e-17
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK +
Sbjct: 739 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 797
Query: 61 D 61
+
Sbjct: 798 E 798
Score = 63.5 bits (153), Expect = 4e-14
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK +
Sbjct: 472 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 530
Query: 61 DN 62
+
Sbjct: 531 GS 532
Score = 63.5 bits (153), Expect = 4e-14
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
M +PV L F +YLL+ K + LS++V + +S + P + +F + G ++++LAPK +
Sbjct: 205 MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 263
Query: 61 DN 62
+
Sbjct: 264 GS 265
>3p91_A Proliferating cell nuclear antigen; DNA binding protein, DNA
replication, processivity, sliding; 2.40A {Entamoeba
histolytica}
Length = 265
Score = 71.2 bits (173), Expect = 4e-17
Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
+ V+ +FA + + FAK+APL++ V LS+S PL++EFK + +++YLAPK + +
Sbjct: 202 HNKDVTASFALKQISEFAKSAPLADNVKLSLSGQAPLIMEFKGEA-CVLKFYLAPKFDEE 260
Query: 61 D 61
D
Sbjct: 261 D 261
>1iz5_A Proliferating cell nuclear antigen; DNA, replication, processivity,
sliding clamp, DNA binding protein; 1.80A {Pyrococcus
furiosus} SCOP: d.131.1.2 d.131.1.2 PDB: 3a2f_B* 1iz4_A
1ge8_A 1isq_A 3lx1_A*
Length = 249
Score = 70.4 bits (171), Expect = 6e-17
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
+QE + YL + K +++V + ++P+ +E+ I D G + + LAP++E
Sbjct: 191 VQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPRVE 248
>2ijx_A DNA polymerase sliding clamp A; PCNA3 subunit, protein-protein
interaction, PCNA123 heterotr binding protein; HET: DNA;
1.90A {Sulfolobus solfataricus} PDB: 2nti_F* 2hii_C
2hik_C 2ix2_C*
Length = 244
Score = 70.0 bits (170), Expect = 7e-17
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
+ +++ YL + LS+ V +S PL + F ++ G + Y LAPK+
Sbjct: 188 FSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKV 244
>3ifv_A PCNA; processivity factor, sliding clamp, halophilic, replication;
2.00A {Haloferax volcanii} PDB: 3hi8_A
Length = 247
Score = 69.9 bits (170), Expect = 9e-17
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 3 EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIESD 60
F+ YL + KA P +V + + + P+ + ++I + +G I Y LAP+I+SD
Sbjct: 189 GAADSLFSLDYLKDMNKAIPTDAEVTVELGEEFPVKLHYQIAEGMGTITYMLAPRIQSD 247
>1ud9_A DNA polymerase sliding clamp A; DNA-binding, DNA replication, DNA
binding protein; HET: DNA; 1.68A {Sulfolobus tokodaii}
SCOP: d.131.1.2 d.131.1.2
Length = 245
Score = 69.3 bits (168), Expect = 1e-16
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
+ S + YL + LS+ V ++ + P+ +EF ++ G + Y LAPK+
Sbjct: 188 FNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKL 244
>3fds_C DNA polymerase sliding clamp B; protein-protein complex, DNA
damage, DNA repair, DNA replica DNA-binding,
DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A
{Sulfolobus solfataricus} PDB: 2io4_A* 2nti_D* 2hii_A
2hik_A 2ix2_A* 2izo_C*
Length = 249
Score = 69.0 bits (168), Expect = 2e-16
Identities = 9/58 (15%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAA-PLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
+ S +++ + K S +S ++P+ ++ + GH+ +++AP++
Sbjct: 192 IDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRL 249
>1rwz_A DNA polymerase sliding clamp; torus, processivity factor,
replication; HET: DNA; 1.80A {Archaeoglobus fulgidus}
SCOP: d.131.1.2 d.131.1.2 PDB: 1rxm_A* 1rxz_A* 3p83_A*
Length = 245
Score = 68.1 bits (165), Expect = 4e-16
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIES 59
F+ YL F K A + + + + + P+ + F++ + Y LAP+IES
Sbjct: 185 NGGEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIES 244
Query: 60 D 60
+
Sbjct: 245 E 245
>3fds_D DNA polymerase sliding clamp C; protein-protein complex, DNA
damage, DNA repair, DNA replica DNA-binding,
DNA-directed DNA polymerase; HET: DNA 1PE PGE; 2.05A
{Sulfolobus solfataricus} PDB: 2nti_E* 2io4_B* 2ix2_B*
2hik_B 2hii_B* 2izo_B*
Length = 245
Score = 66.9 bits (162), Expect = 1e-15
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 1 MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
VS ++ Y+ N K S+ + L +PL + FK+ G+ +Y+AP+
Sbjct: 189 SGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPR 244
>3a1j_C Cell cycle checkpoint protein RAD1; DNA damage, DNA repair,
exonuclease, hydrolase, nuclease, nucleus,
phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A
{Homo sapiens} PDB: 3g65_B 3ggr_C
Length = 263
Score = 44.9 bits (106), Expect = 1e-07
Identities = 12/58 (20%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 2 QEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKID----DIGHIRYYLAP 55
+ + L KA LS +V + L +++ I I + YY P
Sbjct: 204 NQTQVNRYKISLLKPSTKALVLSCKVSIRTDNRGFLSLQYMIRNEDGQICFVEYYCCP 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.045
Identities = 6/62 (9%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 3 EPVSLNFACRYLLN-FAKAAP-----LSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
+ S+ + + K L +V + + ++ E D + +
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 57 IE 58
+
Sbjct: 352 CD 353
>3g65_A Cell cycle checkpoint control protein RAD9A; PCNA, DNA binding
clamp, DNA damage, DNA repair, exonuclease, hydrolase,
nuclease, nucleus, phosphoprotein; 2.90A {Homo sapiens}
Length = 296
Score = 28.2 bits (62), Expect = 0.12
Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 1 MQEPVSLNFACRYLLNF-AKAAPLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLAPKIE 58
QE V++ F + + A + + + P + K + + LA +
Sbjct: 209 AQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLL-DGHFVLATLSD 267
Query: 59 SDDN 62
+D
Sbjct: 268 TDSG 271
>3a1j_A Cell cycle checkpoint control protein RAD9A; DNA damage, DNA
repair, exonuclease, hydrolase, nuclease, nucleus,
phosphoprotein, polymorphism, cytoplasm; HET: SUC; 2.50A
{Homo sapiens} PDB: 3ggr_A
Length = 266
Score = 27.7 bits (61), Expect = 0.20
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 1 MQEPVSLNFACRYLLNFAKAA-PLSNQVCLSMSL-DVPLVVEFKIDDIGHIRYYLA 54
QE V++ F + A + + + P + K + + LA
Sbjct: 209 AQEGVAITFCLKEFRGLLSFAESANLNLSIHFDAPGRPAIFTIKDSLL-DGHFVLA 263
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 24.8 bits (54), Expect = 1.4
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 12 RYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIR 50
+Y + + Q S ++ ++E I + GH +
Sbjct: 26 QYENHLMANGFDNVQFMGSNVMEDQDLLEIGILNSGHRQ 64
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene,
replication block, mutagenesis, transferase/electron
transport/DNA complex; HET: DNA 2DT 8FG; 2.10A
{Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB:
1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A*
1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A*
1zyq_A* 2ajq_A*
Length = 698
Score = 24.5 bits (53), Expect = 2.7
Identities = 4/18 (22%), Positives = 6/18 (33%)
Query: 26 QVCLSMSLDVPLVVEFKI 43
V + L E K+
Sbjct: 673 WVGDHWNFRCLLDTEGKM 690
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural
genomics, joint center for structural genomics, JCSG;
HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Length = 114
Score = 24.3 bits (53), Expect = 2.9
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Query: 29 LSMSLDVPLVVEFKIDDIGHIRYYLAPKIE 58
S+S D+P+V+E +D+ I +L +I+
Sbjct: 68 FSLSPDLPIVLEI-VDEEERINLFL-KEID 95
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition,
helix-coil dynamics, inhibitor design, complex
(polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP:
a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A*
1taq_A*
Length = 832
Score = 24.1 bits (53), Expect = 3.5
Identities = 7/13 (53%), Positives = 7/13 (53%)
Query: 31 MSLDVPLVVEFKI 43
L VPL VE I
Sbjct: 811 YPLAVPLEVEVGI 823
>3h7u_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.25A {Arabidopsis thaliana}
Length = 335
Score = 23.7 bits (52), Expect = 4.0
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 5 VSLNFACRY---LLNFAKAAPLSNQV 27
VS NF+ + LL A+ P NQV
Sbjct: 177 VS-NFSTKKLADLLELARVPPAVNQV 201
>2bgs_A Aldose reductase; holoenzyme, aldo/keto reductase, oxidoreductase;
HET: NDP; 1.64A {Hordeum vulgare} PDB: 2bgq_A* 2vdg_A*
Length = 344
Score = 23.7 bits (52), Expect = 4.7
Identities = 8/26 (30%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 5 VSLNFACRY---LLNFAKAAPLSNQV 27
V N+ LL AK P Q+
Sbjct: 189 VC-NYTVTKLNRLLRSAKIPPAVCQM 213
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA),
exonuclease, transferase, transferase/DNA complex; HET:
US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1
PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A*
2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Length = 605
Score = 23.3 bits (51), Expect = 5.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 31 MSLDVPLVVEFKI 43
LDVPL+VE
Sbjct: 585 TRLDVPLLVEVGS 597
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex,
thymine-adenine, CLOS conformation; HET: DNA 2DT D3T;
1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A*
3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A*
3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A*
1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ...
Length = 592
Score = 23.3 bits (51), Expect = 6.1
Identities = 5/13 (38%), Positives = 9/13 (69%)
Query: 31 MSLDVPLVVEFKI 43
++L VPL V++
Sbjct: 572 VTLRVPLKVDYHY 584
>3h7r_A Aldo-keto reductase; stress response, NADP, drought tolerance,
oxidoreductase; HET: NAP; 1.40A {Arabidopsis thaliana}
Length = 331
Score = 23.3 bits (51), Expect = 6.4
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 4/26 (15%)
Query: 5 VSLNFACRY---LLNFAKAAPLSNQV 27
VS NF+ + LLN A+ P NQV
Sbjct: 173 VS-NFSSKKLTDLLNVARVTPAVNQV 197
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.411
Gapped
Lambda K H
0.267 0.0804 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 895,778
Number of extensions: 37837
Number of successful extensions: 95
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 32
Length of query: 62
Length of database: 6,701,793
Length adjustment: 33
Effective length of query: 29
Effective length of database: 5,780,400
Effective search space: 167631600
Effective search space used: 167631600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.3 bits)