RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5572
         (62 letters)



>d1u7ba2 d.131.1.2 (A:127-255) Proliferating cell nuclear antigen
           (PCNA) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 129

 Score = 73.9 bits (181), Expect = 1e-19
 Identities = 40/57 (70%), Positives = 45/57 (78%)

Query: 1   MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
           M EPV L FA RYL  F KA PLS+ V LSMS DVPLVVE+KI D+GH++YYLAPKI
Sbjct: 73  MNEPVQLTFALRYLNFFTKATPLSSTVTLSMSADVPLVVEYKIADMGHLKYYLAPKI 129


>d1plqa2 d.131.1.2 (A:127-258) Proliferating cell nuclear antigen
           (PCNA) {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 132

 Score = 71.5 bits (175), Expect = 9e-19
 Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 1   MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKIESD 60
           M +PV L F  +YLL+  K + LS++V + +S + P + +F +   G ++++LAPK   +
Sbjct: 73  MDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKS-GFLQFFLAPKFNDE 131

Query: 61  D 61
           +
Sbjct: 132 E 132


>d1ud9a2 d.131.1.2 (A:127-245) Proliferating cell nuclear antigen
           (PCNA) {Archaeon Sulfolobus tokodaii [TaxId: 111955]}
          Length = 119

 Score = 70.7 bits (173), Expect = 1e-18
 Identities = 15/57 (26%), Positives = 28/57 (49%)

Query: 1   MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPKI 57
             +  S  +   YL +      LS+ V ++ +   P+ +EF ++  G + Y LAPK+
Sbjct: 62  FNKESSSAYDVEYLNDIISLTKLSDYVKVAFADQKPMQLEFNMEGGGKVTYLLAPKL 118


>d1rwza2 d.131.1.2 (A:123-244) Proliferating cell nuclear antigen
           (PCNA) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 122

 Score = 68.4 bits (167), Expect = 1e-17
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 3   EPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKI-DDIGHIRYYLAPKIES 59
                 F+  YL  F K A   + + + +  + P+ + F++      + Y LAP+IES
Sbjct: 65  GEARSMFSVDYLKEFCKVAGSGDLLTIHLGTNYPVRLVFELVGGRAKVEYILAPRIES 122


>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen
           (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 121

 Score = 68.0 bits (166), Expect = 1e-17
 Identities = 14/56 (25%), Positives = 29/56 (51%)

Query: 1   MQEPVSLNFACRYLLNFAKAAPLSNQVCLSMSLDVPLVVEFKIDDIGHIRYYLAPK 56
           +QE     +   YL +  K    +++V +    ++P+ +E+ I D G + + LAP+
Sbjct: 66  VQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPR 121


>d1kfsa2 e.8.1.1 (A:519-928) DNA polymerase I (Klenow fragment)
           {Escherichia coli [TaxId: 562]}
          Length = 410

 Score = 24.4 bits (52), Expect = 1.2
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query: 31  MSLDVPLVVEFKI 43
             LDVPL+VE   
Sbjct: 390 TRLDVPLLVEVGS 402


>d2hhva2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment)
           {Bacillus stearothermophilus, newly identified strain as
           yet unnamed [TaxId: 1422]}
          Length = 408

 Score = 23.7 bits (50), Expect = 1.8
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 31  MSLDVPLVVEFKI 43
           ++L VPL V++  
Sbjct: 388 VTLRVPLKVDYHY 400


>d1x9ma2 e.8.1.1 (A:211-704) T7 phage DNA polymerase {Bacteriophage
           T7 [TaxId: 10760]}
          Length = 494

 Score = 23.5 bits (49), Expect = 1.9
 Identities = 3/13 (23%), Positives = 5/13 (38%)

Query: 31  MSLDVPLVVEFKI 43
            +    L  E K+
Sbjct: 474 WNFRCLLDTEGKM 486


>d1qtma2 e.8.1.1 (A:423-831) DNA polymerase I (Klenow fragment)
           {Thermus aquaticus [TaxId: 271]}
          Length = 409

 Score = 23.0 bits (48), Expect = 3.6
 Identities = 7/13 (53%), Positives = 7/13 (53%)

Query: 31  MSLDVPLVVEFKI 43
             L VPL VE  I
Sbjct: 389 YPLAVPLEVEVGI 401


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.139    0.411 

Gapped
Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 221,246
Number of extensions: 7442
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 9
Length of query: 62
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 30
Effective length of database: 1,968,236
Effective search space: 59047080
Effective search space used: 59047080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.6 bits)