BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5573
(338 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 68/131 (51%), Gaps = 19/131 (14%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N + TPL A + ++ +VE LL+ G DVN K K DG T L +A H
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGH 80
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
EIV++LL GADVN K G+T LH+A R IV LL+ GA
Sbjct: 81 L------------EIVEVLLKAGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADV 127
Query: 117 NVVDGKTGKTP 127
N D K GKTP
Sbjct: 128 NAQD-KFGKTP 137
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 67/135 (49%), Gaps = 19/135 (14%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK 69
+L A D+ +R+ L+ G DVN K K DG T L +A H
Sbjct: 5 KLLEAARAGQDDEVRI---LMANGADVNAKDK-DGYTPLHLAAREGHL------------ 48
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL- 128
EIV++LL GADVN K G+T LH+A R IV LL+ GA N D K G TPL
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLH 106
Query: 129 LHAGKGAREVNTVLL 143
L A +G E+ VLL
Sbjct: 107 LAAREGHLEIVEVLL 121
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 70/131 (53%), Gaps = 21/131 (16%)
Query: 1 MFSGATIN----VELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N V TPL A + ++ +VE LL+ G DVN L G T L +A HF H
Sbjct: 34 MANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTL-GSTPLHLAAHFGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAY 115
EIV++LL NGADVN K G T LH+A R H + IV LL++GA
Sbjct: 93 L------------EIVEVLLKNGADVNAKDDNGITPLHLAANRGHLE--IVEVLLKYGAD 138
Query: 116 YNVVDGKTGKT 126
N D K GKT
Sbjct: 139 VNAQD-KFGKT 148
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN G+T LH+A + IV LL++GA N D G T
Sbjct: 25 GRDDEVRILMANGADVNAADVVGWTPLHLAA-YWGHLEIVEVLLKNGADVNAYD-TLGST 82
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A G E+ VLL
Sbjct: 83 PLHLAAHFGHLEIVEVLL 100
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 70/133 (52%), Gaps = 16/133 (12%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A + ++ +V+ LL G DVN K K +GRT L +A H E+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHL------------EV 50
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LH 130
V LLL+ GADVN K G T LH+A R + +V+ LL GA N D K G+TPL L
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGADVNAKD-KNGRTPLHLA 108
Query: 131 AGKGAREVNTVLL 143
A G EV +LL
Sbjct: 109 ARNGHLEVVKLLL 121
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/130 (42%), Positives = 70/130 (53%), Gaps = 19/130 (14%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N E TPL A ++ +VE LL+ G DVN K+ G T L
Sbjct: 34 MANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM-GDTPL-------- 84
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
H+AAL +G EIV++LL NGADVN GFT LH+A + IV LL++GA
Sbjct: 85 -HLAAL---YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLE-IVEVLLKYGADV 139
Query: 117 NVVDGKTGKT 126
N D K GKT
Sbjct: 140 NAQD-KFGKT 148
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
G + V +L+ NGADVN + +G T LH+A + H + IV LL+HGA N D K G
Sbjct: 25 GQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLE--IVEVLLKHGADVNAAD-KMGD 81
Query: 126 TPL-LHAGKGAREVNTVLL 143
TPL L A G E+ VLL
Sbjct: 82 TPLHLAALYGHLEIVEVLL 100
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 68/130 (52%), Gaps = 19/130 (14%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N E TPL A ++ ++ +VE LL+ G DVN + G T L +A F H
Sbjct: 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
EIV++LL NGADVN G T LH+A F + IV LL++GA
Sbjct: 93 L------------EIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE-IVEVLLKNGADV 139
Query: 117 NVVDGKTGKT 126
N D K GKT
Sbjct: 140 NAQD-KFGKT 148
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 47/78 (60%), Gaps = 3/78 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN + A+G+T LH+A F+ IV LL++GA N VD G T
Sbjct: 25 GRDDEVRILMANGADVNAEDASGWTPLHLAA-FNGHLEIVEVLLKNGADVNAVD-HAGMT 82
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A G E+ VLL
Sbjct: 83 PLRLAALFGHLEIVEVLL 100
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 66/130 (50%), Gaps = 19/130 (14%)
Query: 1 MFSGATIN----VELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N V TPL A + ++ +VE LL+ G DVN L G T L +A H
Sbjct: 34 MANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSL-GVTPLHLAADRGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
E+V++LL NGADVN GFT LH+A + IV LL+HGA
Sbjct: 93 L------------EVVEVLLKNGADVNANDHNGFTPLHLAANIGHLE-IVEVLLKHGADV 139
Query: 117 NVVDGKTGKT 126
N D K GKT
Sbjct: 140 NAQD-KFGKT 148
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN G+T LH+A F + IV LL++GA N D G T
Sbjct: 25 GQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLE-IVEVLLKNGADVN-ADDSLGVT 82
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A +G EV VLL
Sbjct: 83 PLHLAADRGHLEVVEVLL 100
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 49/130 (37%), Positives = 69/130 (53%), Gaps = 19/130 (14%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N TPL A + ++ +VE LL+ G DV+ + G T L +A ++ H
Sbjct: 34 MANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLHLAAYWGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
EIV++LL NGADVN + G T LH+A ++ + IV LL+HGA
Sbjct: 93 L------------EIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLE-IVEVLLKHGADV 139
Query: 117 NVVDGKTGKT 126
N D K GKT
Sbjct: 140 NAQD-KFGKT 148
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN G T L +A + H
Sbjct: 11 GSDLGRKLLEAARAGQDDEVRI---LMANGADVNAADNT-GTTPLHLAAYSGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL +GADV+ G+T LH+A + + IV LL++GA N +D
Sbjct: 61 ------EIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLE-IVEVLLKNGADVNAMD-SD 112
Query: 124 GKTPLLHAGK-GAREVNTVLL 143
G TPL A K G E+ VLL
Sbjct: 113 GMTPLHLAAKWGYLEIVEVLL 133
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 60/115 (52%), Gaps = 15/115 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A ++ +VE LLR G DVN + +G T L +A H EI
Sbjct: 37 TPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLHLAASLGHL------------EI 83
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
V++LL GADVN K ATG T L++A + IV LL+HGA N D K GKT
Sbjct: 84 VEVLLKYGADVNAKDATGITPLYLAA-YWGHLEIVEVLLKHGADVNAQD-KFGKT 136
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGAD N G T LHMA + IV LLR+GA N VD G T
Sbjct: 13 GQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLE-IVEVLLRNGADVNAVD-TNGTT 70
Query: 127 PL-LHAGKGAREVNTVLLYF 145
PL L A G E+ VLL +
Sbjct: 71 PLHLAASLGHLEIVEVLLKY 90
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N + +TPL A + ++ +VE LL+ G DVN + K G+TA +++ + +
Sbjct: 91 GADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKF-GKTAFDISIDIGNEDL 149
Query: 60 AALL 63
A +L
Sbjct: 150 AEIL 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN + G T L +A HF H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNAR-DFTGWTPLHLAAHFGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL NGADVN K + G T LH+A R IV LL++GA N D
Sbjct: 61 ------EIVEVLLKNGADVNAKDSLGVTPLHLAAR-RGHLEIVEVLLKNGADVNASD-SH 112
Query: 124 GKTPL-LHAGKGAREVNTVLL 143
G TPL L A +G E+ VLL
Sbjct: 113 GFTPLHLAAKRGHLEIVEVLL 133
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 28/136 (20%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N TPL A ++ +VE LL+ G DVN K L G T L +A H
Sbjct: 34 MANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSL-GVTPLHLAARRGH 92
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHM 95
I +L+ +GA EIV++LL NGADVN + G TA +
Sbjct: 93 LEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Query: 96 ACRFHDDD--SIVRKL 109
+ ++D I++KL
Sbjct: 153 SIDNGNEDLAEILQKL 168
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 27/138 (19%)
Query: 3 SGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
+GA +N TPL A + + +V+ L+ G DVN K DGRT L A H+
Sbjct: 26 NGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKE 84
Query: 59 IAALLIHHGA---------------------KEIVDLLLDNGADVNFKSATGFTALHMAC 97
I LLI GA KEIV LL+ GADVN + G T L +A
Sbjct: 85 IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA- 143
Query: 98 RFHDDDSIVRKLLRHGAY 115
R H ++ IV+ L + G +
Sbjct: 144 REHGNEEIVKLLEKQGGW 161
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVD 73
L A + N V+ L+ G DVN DGRT L A H KEIV
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGH------------KEIVK 54
Query: 74 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 133
LL+ GADVN K + G T LH A + IV+ L+ GA N D G+TPL +A K
Sbjct: 55 LLISKGADVNAKDSDGRTPLHYAAK-EGHKEIVKLLISKGADVNAKD-SDGRTPLHYAAK 112
Query: 134 -GAREVNTVLL 143
G +E+ +L+
Sbjct: 113 EGHKEIVKLLI 123
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/141 (39%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN K K DG T L +A H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNAKDK-DGYTPLHLAAREGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL GADVN K G+T LH+A R IV LL+ GA N D K
Sbjct: 61 ------EIVEVLLKAGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KD 112
Query: 124 GKTPL-LHAGKGAREVNTVLL 143
G TPL L A +G E+ VLL
Sbjct: 113 GYTPLHLAAREGHLEIVEVLL 133
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 57/122 (46%), Gaps = 26/122 (21%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N + TPL A + ++ +VE LL+ G DVN K K DG T L +A H
Sbjct: 34 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGH 92
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHM 95
I +L+ GA EIV++LL GADVN + G TA +
Sbjct: 93 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Query: 96 AC 97
+
Sbjct: 153 SI 154
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVD 73
L A + N V+ LL G DVN DG+T L +A H KE+V
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVN-ASDSDGKTPLHLAAENGH------------KEVVK 54
Query: 74 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAG 132
LLL GAD N K + G T LH+A + +V+ LL GA N D GKTPL L A
Sbjct: 55 LLLSQGADPNAKDSDGKTPLHLAAE-NGHKEVVKLLLSQGADPNAKD-SDGKTPLHLAAE 112
Query: 133 KGAREVNTVLL 143
G +EV +LL
Sbjct: 113 NGHKEVVKLLL 123
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 27/140 (19%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
+ +GA +N TPL A + + +V+ LL G D N K DG+T L +A H
Sbjct: 24 LENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDS-DGKTPLHLAAENGH 82
Query: 57 RHIAALLIHHGA---------------------KEIVDLLLDNGADVNFKSATGFTALHM 95
+ + LL+ GA KE+V LLL GAD N + G T L +
Sbjct: 83 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDL 142
Query: 96 ACRFHDDDSIVRKLLRHGAY 115
A R H ++ +V+ L + G +
Sbjct: 143 A-REHGNEEVVKLLEKQGGW 161
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 19/130 (14%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N LTPL A ++ +VE LL+ G DVN + + G T L
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPL-------- 84
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
H+AAL+ H EIV++LL +GADVN G T LH+A + IV LL+HGA
Sbjct: 85 -HLAALIGH---LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE-IVEVLLKHGADV 139
Query: 117 NVVDGKTGKT 126
N D K GKT
Sbjct: 140 NAQD-KFGKT 148
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN A+G T LH+A + + IV LL+HGA N +D G T
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE-IVEVLLKHGADVNAID-IXGST 82
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A G E+ VLL
Sbjct: 83 PLHLAALIGHLEIVEVLL 100
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 69/130 (53%), Gaps = 19/130 (14%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N LTPL A ++ +VE LL+ G DVN + + G T L
Sbjct: 34 MANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPL-------- 84
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
H+AAL+ H EIV++LL +GADVN G T LH+A + IV LL+HGA
Sbjct: 85 -HLAALIGH---LEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLE-IVEVLLKHGADV 139
Query: 117 NVVDGKTGKT 126
N D K GKT
Sbjct: 140 NAQD-KFGKT 148
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN A+G T LH+A + + IV LL+HGA N +D G T
Sbjct: 25 GQDDEVRILMANGADVNATDASGLTPLHLAATYGHLE-IVEVLLKHGADVNAID-IMGST 82
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A G E+ VLL
Sbjct: 83 PLHLAALIGHLEIVEVLL 100
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 66/140 (47%), Gaps = 27/140 (19%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
+ +GA +N TPL A + + +V+ L+ G DVN K DGRT L A H
Sbjct: 24 IENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGH 82
Query: 57 RHIAALLI-----------------HH----GAKEIVDLLLDNGADVNFKSATGFTALHM 95
+ + LLI HH G KE+V LL+ GADVN + G T L +
Sbjct: 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDL 142
Query: 96 ACRFHDDDSIVRKLLRHGAY 115
A R H ++ +V+ L + G +
Sbjct: 143 A-REHGNEEVVKLLEKQGGW 161
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 63/131 (48%), Gaps = 16/131 (12%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVD 73
L A + N V+ L+ G DVN DGRT L A H KE+V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVN-ASDSDGRTPLHHAAENGH------------KEVVK 54
Query: 74 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 133
LL+ GADVN K + G T LH A + +V+ L+ GA N D G+TPL HA +
Sbjct: 55 LLISKGADVNAKDSDGRTPLHHAAE-NGHKEVVKLLISKGADVNAKD-SDGRTPLHHAAE 112
Query: 134 -GAREVNTVLL 143
G +EV +L+
Sbjct: 113 NGHKEVVKLLI 123
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 57.8 bits (138), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A + ++ +V+ LL G DVN K K +GRT L +A H E+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGHL------------EV 50
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 115
V LLL+ GADVN K G T LH+A R + +V+ LL GAY
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLHLAAR-NGHLEVVKLLLEAGAY 93
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 52/102 (50%), Gaps = 15/102 (14%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
+GRT L +A H E+V LLL+ GADVN K G T LH+A R +
Sbjct: 1 NGRTPLHLAARNGHL------------EVVKLLLEAGADVNAKDKNGRTPLHLAAR-NGH 47
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREVNTVLL 143
+V+ LL GA N D K G+TPL L A G EV +LL
Sbjct: 48 LEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHLEVVKLLL 88
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 67/135 (49%), Gaps = 19/135 (14%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK 69
+L A D+ +R+ L+ G DVN K K DG T L +A H
Sbjct: 5 KLLEAARAGQDDEVRI---LMANGADVNAKDK-DGYTPLHLAAREGHL------------ 48
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL- 128
EIV++LL GADVN K G+T LH+A R IV LL+ GA N D K G TPL
Sbjct: 49 EIVEVLLKAGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAKD-KDGYTPLH 106
Query: 129 LHAGKGAREVNTVLL 143
L A +G E+ VLL
Sbjct: 107 LAAREGHLEIVEVLL 121
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 60/128 (46%), Gaps = 27/128 (21%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N + TPL A + ++ +VE LL+ G DVN K K DG T L +A H
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGH 80
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHM 95
I +L+ GA EIV++LL GADVN + G T +
Sbjct: 81 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDL 140
Query: 96 ACR-FHDD 102
A R H+D
Sbjct: 141 AIREGHED 148
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 57/125 (45%), Gaps = 23/125 (18%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--- 68
TPL A + + +V+ LL G D N K DGRT L A H+ I LL+ GA
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNAKDS-DGRTPLHYAAENGHKEIVKLLLSKGADPN 97
Query: 69 ------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL 110
KEIV LLL GAD N + G T L +A R H ++ IV+ L
Sbjct: 98 AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA-REHGNEEIVKLLE 156
Query: 111 RHGAY 115
+ G +
Sbjct: 157 KQGGW 161
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVD 73
L A + N V+ LL G D N DGRT L A H KEIV
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPN-ASDSDGRTPLHYAAENGH------------KEIVK 54
Query: 74 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 133
LLL GAD N K + G T LH A + IV+ LL GA N D G+TPL +A +
Sbjct: 55 LLLSKGADPNAKDSDGRTPLHYAAE-NGHKEIVKLLLSKGADPNAKD-SDGRTPLHYAAE 112
Query: 134 -GAREVNTVLL 143
G +E+ +LL
Sbjct: 113 NGHKEIVKLLL 123
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN K + G T L++A
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNAKDEY-GLTPLYLATA---------- 56
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
HG EIV++LL NGADVN A GFT LH+A F I LL+HGA N D K
Sbjct: 57 --HGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA-FIGHLEIAEVLLKHGADVNAQD-KF 112
Query: 124 GKTPL-LHAGKGAREVNTVL 142
GKT + G G ++ +L
Sbjct: 113 GKTAFDISIGNGNEDLAEIL 132
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G + +L AA D+ +R+ L+ G DVN +G T L H+AA
Sbjct: 3 GQDLGKKLLEAAAAGQDDEVRI---LMANGADVNATDD-NGLTPL---------HLAAA- 48
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
+G EIV++LL NGADVN + G T LH+A + IV LL+HGA N D +
Sbjct: 49 --NGQLEIVEVLLKNGADVNASDSAGITPLHLAA-YDGHLEIVEVLLKHGADVNAYD-RA 104
Query: 124 GKTPL-LHAGKGAREVNTVLL 143
G TPL L A G E+ VLL
Sbjct: 105 GWTPLHLAALSGQLEIVEVLL 125
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 26/128 (20%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N LTPL A + + +VE LL+ G DVN G T L +A + H
Sbjct: 26 MANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA-GITPLHLAAYDGH 84
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHM 95
I +L+ HGA EIV++LL +GADVN + A G TA +
Sbjct: 85 LEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDI 144
Query: 96 ACRFHDDD 103
+ +D
Sbjct: 145 SINQGQED 152
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/130 (38%), Positives = 64/130 (49%), Gaps = 19/130 (14%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N TPL A ++ +VE LL+ G DVN G T L +A H
Sbjct: 34 MANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY-GATPLHLAADNGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
EIV++LL +GADVN K GFT LH+A + IV LL++GA
Sbjct: 93 L------------EIVEVLLKHGADVNAKDYEGFTPLHLAA-YDGHLEIVEVLLKYGADV 139
Query: 117 NVVDGKTGKT 126
N D K GKT
Sbjct: 140 NAQD-KFGKT 148
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/143 (35%), Positives = 66/143 (46%), Gaps = 19/143 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN L G T L +A H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNATDWL-GHTPLHLAAKTGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL GADVN G T LH+A + IV LL+HGA N D
Sbjct: 61 ------EIVEVLLKYGADVNAWDNYGATPLHLAAD-NGHLEIVEVLLKHGADVNAKD-YE 112
Query: 124 GKTPL-LHAGKGAREVNTVLLYF 145
G TPL L A G E+ VLL +
Sbjct: 113 GFTPLHLAAYDGHLEIVEVLLKY 135
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 67/141 (47%), Gaps = 19/141 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN DG T L +A H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNATDN-DGYTPLHLAASNGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL NGADVN TG T LH+A + IV LL+HGA N D
Sbjct: 61 ------EIVEVLLKNGADVNASDLTGITPLHLAAATGHLE-IVEVLLKHGADVNAYD-ND 112
Query: 124 GKTPLLHAGK-GAREVNTVLL 143
G TPL A K G E+ VLL
Sbjct: 113 GHTPLHLAAKYGHLEIVEVLL 133
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 54/117 (46%), Gaps = 26/117 (22%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N TPL A + ++ +VE LL+ G DVN L G T L +A H
Sbjct: 34 MANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNAS-DLTGITPLHLAAATGH 92
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTA 92
I +L+ HGA EIV++LL +GADVN + G TA
Sbjct: 93 LEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/144 (36%), Positives = 70/144 (48%), Gaps = 21/144 (14%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN + G T L +A H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNAEDTY-GDTPLHLAARVGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGK 122
EIV++LL NGADVN +G T LH+A R H + IV LL++GA N D
Sbjct: 61 ------EIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLE--IVEVLLKYGADVN-ADDT 111
Query: 123 TGKTPL-LHAGKGAREVNTVLLYF 145
G TPL L A G E+ VLL +
Sbjct: 112 IGSTPLHLAADTGHLEIVEVLLKY 135
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 26/122 (21%)
Query: 1 MFSGATINVELT----PLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N E T PL A ++ +VE LL+ G DVN + G T L +A H
Sbjct: 34 MANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLHLAAKRGH 92
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHM 95
I +L+ +GA EIV++LL GADVN + G TA +
Sbjct: 93 LEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 96 AC 97
+
Sbjct: 153 SI 154
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L G DVN G T L H+AA+L
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LTANGADVNANDYW-GHTPL---------HLAAML 57
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
H EIV++LL NGADVN TG T LH+A + D IV LL+HGA N D K
Sbjct: 58 GH---LEIVEVLLKNGADVNATGNTGRTPLHLAA-WADHLEIVEVLLKHGADVNAQD-KF 112
Query: 124 GKT 126
GKT
Sbjct: 113 GKT 115
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A ++ +VE LL+ G DVN GRT L +A +H EI
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLHLAAWADHL------------EI 95
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDD--SIVRKL 109
V++LL +GADVN + G TA ++ ++D I++KL
Sbjct: 96 VEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 61/124 (49%), Gaps = 20/124 (16%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN + DG T L +A H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVN-ALDEDGLTPLHLAAQLGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGK 122
EIV++LL GADVN + G T LH+A R H + IV LL+HGA N D K
Sbjct: 61 ------EIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLE--IVEVLLKHGADVNAQD-K 111
Query: 123 TGKT 126
GKT
Sbjct: 112 FGKT 115
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N LTPL A ++ +VE LL+ G DVN + G T L
Sbjct: 34 MANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNF-GITPL-------- 84
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD--SIVRKL 109
H+AA+ G EIV++LL +GADVN + G TA ++ ++D I++KL
Sbjct: 85 -HLAAI---RGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 72/143 (50%), Gaps = 19/143 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN + G T L H+AA+
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LIANGADVN-AVDNTGLTPL---------HLAAV- 56
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
G EIV++LL +GADV+ GFT LH+A IV LL++GA N D T
Sbjct: 57 --SGHLEIVEVLLKHGADVDAADVYGFTPLHLAA-MTGHLEIVEVLLKYGADVNAFD-MT 112
Query: 124 GKTPL-LHAGKGAREVNTVLLYF 145
G TPL L A +G E+ VLL +
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKY 135
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 51/113 (45%), Gaps = 22/113 (19%)
Query: 5 ATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLI 64
A N LTPL A ++ +VE LL+ G DV + + G T L +A H I +L+
Sbjct: 42 AVDNTGLTPLHLAAVSGHLEIVEVLLKHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLL 100
Query: 65 HHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHMA 96
+GA EIV++LL GADVN + G TA ++
Sbjct: 101 KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDIS 153
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN + K+ G T L +A +H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNAEDKV-GLTPLHLAAMNDHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL NGADVN A G T LH+ + + IV LL+HGA N D K
Sbjct: 61 ------EIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLE-IVEVLLKHGADVNAQD-KF 112
Query: 124 GKT 126
GKT
Sbjct: 113 GKT 115
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N E LTPL A ++++ +VE LL+ G DVN + G T L + + H
Sbjct: 34 MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLHLVAMYGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD--SIVRKL 109
EIV++LL +GADVN + G TA ++ ++D I++KL
Sbjct: 93 L------------EIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN + G T LH+A +D IV LL++GA N +D G+T
Sbjct: 25 GQDDEVRILMANGADVNAEDKVGLTPLHLAA-MNDHLEIVEVLLKNGADVNAIDA-IGET 82
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A G E+ VLL
Sbjct: 83 PLHLVAMYGHLEIVEVLL 100
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 71/141 (50%), Gaps = 19/141 (13%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN G T L H+AA +
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNAHDD-QGSTPL---------HLAAWI 57
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
H EIV++LL +GADVN + G+T LH+A + IV LL++GA N D
Sbjct: 58 GH---PEIVEVLLKHGADVNARDTDGWTPLHLAAD-NGHLEIVEVLLKYGADVNAQDA-Y 112
Query: 124 GKTPL-LHAGKGAREVNTVLL 143
G TPL L A +G E+ VLL
Sbjct: 113 GLTPLHLAADRGHLEIVEVLL 133
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 28/136 (20%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N TPL A W + +VE LL+ G DVN + DG T L +A H
Sbjct: 34 MANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNAR-DTDGWTPLHLAADNGH 92
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHM 95
I +L+ +GA EIV++LL +GADVN + G TA +
Sbjct: 93 LEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDI 152
Query: 96 ACRFHDDD--SIVRKL 109
+ ++D I++KL
Sbjct: 153 SIDNGNEDLAEILQKL 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 71/155 (45%), Gaps = 11/155 (7%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN G T LH+A IV LL+HGA N D G T
Sbjct: 25 GQDDEVRILMANGADVNAHDDQGSTPLHLAAWI-GHPEIVEVLLKHGADVNARD-TDGWT 82
Query: 127 PL-LHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNN 185
PL L A G E+ VLL + ++ A T + D I+EV + G D N
Sbjct: 83 PLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG-ADVN- 140
Query: 186 FSLLKVAKNDAGETILDIFFELIGKNDTTILDRLD 220
A++ G+T DI + ++ IL +L+
Sbjct: 141 ------AQDKFGKTAFDISIDNGNEDLAEILQKLN 169
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 25/123 (20%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA- 68
+ TPL A N + +VEYLL+ G DV+ K K G L A + H +A LL+ HGA
Sbjct: 44 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAV 102
Query: 69 --------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 108
EI LLL +GAD K+ G T L + D D+ ++
Sbjct: 103 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL---VKDGDTDIQD 159
Query: 109 LLR 111
LLR
Sbjct: 160 LLR 162
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
+V+ LL +GADV+ K G LH AC + + + L++HGA NV D K LH
Sbjct: 59 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLH 115
Query: 131 --AGKGAREVNTVLLYF----------INEIFKLMANNDTTILDRL 164
A KG E+ +LL N L+ + DT I D L
Sbjct: 116 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL 161
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 25/123 (20%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA- 68
+ TPL A N + +VEYLL+ G DV+ K K G L A + H +A LL+ HGA
Sbjct: 46 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAV 104
Query: 69 --------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 108
EI LLL +GAD K+ G T L + D D+ ++
Sbjct: 105 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL---VKDGDTDIQD 161
Query: 109 LLR 111
LLR
Sbjct: 162 LLR 164
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
+V+ LL +GADV+ K G LH AC + + + L++HGA NV D K LH
Sbjct: 61 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLH 117
Query: 131 --AGKGAREVNTVLLYF----------INEIFKLMANNDTTILDRL 164
A KG E+ +LL N L+ + DT I D L
Sbjct: 118 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL 163
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 56/123 (45%), Gaps = 25/123 (20%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA- 68
+ TPL A N + +VEYLL+ G DV+ K K G L A + H +A LL+ HGA
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGHYEVAELLVKHGAV 100
Query: 69 --------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRK 108
EI LLL +GAD K+ G T L + D D+ ++
Sbjct: 101 VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL---VKDGDTDIQD 157
Query: 109 LLR 111
LLR
Sbjct: 158 LLR 160
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
+V+ LL +GADV+ K G LH AC + + + L++HGA NV D K LH
Sbjct: 57 VVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVAD--LWKFTPLH 113
Query: 131 --AGKGAREVNTVLLYF----------INEIFKLMANNDTTILDRL 164
A KG E+ +LL N L+ + DT I D L
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLL 159
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN + G T L +A ++H
Sbjct: 11 GSDLGKKLLEAARAGQDDEVRI---LMANGADVNANDR-KGNTPLHLAADYDHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL +GADVN G T LH+A F IV LL+HGA N D K
Sbjct: 61 ------EIVEVLLKHGADVNAHDNDGSTPLHLAALF-GHLEIVEVLLKHGADVNAQD-KF 112
Query: 124 GKT 126
GKT
Sbjct: 113 GKT 115
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N TPL A +++ +VE LL+ G DVN DG T L +A F H
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDN-DGSTPLHLAALFGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD--SIVRKL 109
EIV++LL +GADVN + G TA ++ ++D I++KL
Sbjct: 93 L------------EIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN G T LH+A + D IV LL+HGA N D G T
Sbjct: 25 GQDDEVRILMANGADVNANDRKGNTPLHLAADY-DHLEIVEVLLKHGADVNAHD-NDGST 82
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A G E+ VLL
Sbjct: 83 PLHLAALFGHLEIVEVLL 100
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 16/133 (12%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A +R+ E LL N K +G T L VAVH N+ +I
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNNL------------DI 194
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-LH 130
V LLL G + + G+T LH+A + + + R LL++G N + G TPL L
Sbjct: 195 VKLLLPRGGSPHSPAWNGYTPLHIAAK-QNQVEVARSLLQYGGSAN-AESVQGVTPLHLA 252
Query: 131 AGKGAREVNTVLL 143
A +G E+ +LL
Sbjct: 253 AQEGHAEMVALLL 265
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 59/118 (50%), Gaps = 15/118 (12%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
LTPL + ++ + + L++ G V+ ++ G T L VA H+ G +
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRM-GYTPLHVASHY------------GNIK 325
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
+V LL + ADVN K+ G++ LH A + D IV LL++GA N V G TPL
Sbjct: 326 LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD-IVTLLLKNGASPNEVSSD-GTTPL 381
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 5 ATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLI 64
AT + TPL A NI+LV++LL+ DVN K KL G + L A H
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKL-GYSPLHQAAQQGH-------- 356
Query: 65 HHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF 99
+IV LLL NGA N S+ G T L +A R
Sbjct: 357 ----TDIVTLLLKNGASPNEVSSDGTTPLAIAKRL 387
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 19/134 (14%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA+ NV TPL A + + +YLL+ VN K K D +T L A H
Sbjct: 37 GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGH--- 92
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
+V LLL+N A+ N + G T LH+A R ++++ L + + +
Sbjct: 93 ---------TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMT 143
Query: 120 DGKTGKTPLLHAGK 133
K G TPL A K
Sbjct: 144 --KKGFTPLHVAAK 155
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 28/141 (19%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK- 69
LTPL AV NN+ +V+ LL G + +G T L +A N +A L+ +G
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPA-WNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 70 --------------------EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL 109
E+V LLL A+ N + +G T LH+ + + L
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVL 297
Query: 110 LRHGAYYNVVDGKT--GKTPL 128
++HG +VD T G TPL
Sbjct: 298 IKHGV---MVDATTRMGYTPL 315
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 62 LLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 121
L++++G EI+++LL ADVN +G+T LH+A + IV LL++GA N +D
Sbjct: 53 LVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAA-YRGHLEIVEVLLKYGADVNAMD- 110
Query: 122 KTGKTPL-LHAGKGAREVNTVLLYF 145
G TPL L A G E+ VLL +
Sbjct: 111 YQGYTPLHLAAEDGHLEIVEVLLKY 135
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 28/136 (20%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N +TPL V + ++ ++E LL+ DVN K G T L +A + H
Sbjct: 34 MANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDK-SGWTPLHLAAYRGH 92
Query: 57 RHIAALLIHHGAK---------------------EIVDLLLDNGADVNFKSATGFTALHM 95
I +L+ +GA EIV++LL GADVN + G TA +
Sbjct: 93 LEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDI 152
Query: 96 ACRFHDDD--SIVRKL 109
+ ++D I++KL
Sbjct: 153 SIDNGNEDLAEILQKL 168
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
D RTAL A H EIV+ LL G VN K G++ LH+A D
Sbjct: 39 DSRTALHWACSAGH------------TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXD 86
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143
+ IV+ LL GA+ N V+ + G TPL +A R V+L
Sbjct: 87 E-IVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVML 125
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A + +VE+LL+ G VN+K G + L HIAA G EI
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPL---------HIAASA---GXDEI 88
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
V LL GA VN + G T LH A + I LL GA + D A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 132 GKGAREVNTVLLYF 145
KG ++ +LL++
Sbjct: 148 AKGNLKMVHILLFY 161
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK-- 69
+PL A +V+ LL G VN + +G T L A N IA +L+ GA
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 70 -------------------EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI--VRK 108
++V +LL A N + G T LH+AC D++ + +
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC---DEERVEEAKF 190
Query: 109 LLRHGAYYNVVDGKTGKTPLLHAGKG 134
L+ GA ++ K KTPL A G
Sbjct: 191 LVTQGASI-YIENKEEKTPLQVAKGG 215
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 14/101 (13%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
D RTAL A H EIV+ LL G VN K G++ LH+A D
Sbjct: 39 DSRTALHWACSAGH------------TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 86
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143
+ IV+ LL GA+ N V+ + G TPL +A R V+L
Sbjct: 87 E-IVKALLVKGAHVNAVN-QNGCTPLHYAASKNRHEIAVML 125
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK-- 69
+PL A +V+ LL G VN + +G T L A N IA +L+ GA
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 70 -------------------EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI--VRK 108
++V +LL A N + G T LH+AC D++ + +
Sbjct: 134 AKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC---DEERVEEAKF 190
Query: 109 LLRHGAYYNVVDGKTGKTPLLHAGKG 134
L+ GA ++ K KTPL A G
Sbjct: 191 LVTQGASI-YIENKEEKTPLQVAKGG 215
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A + +VE+LL+ G VN+K G + L HIAA G EI
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDA-GWSPL---------HIAASA---GRDEI 88
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
V LL GA VN + G T LH A + I LL GA + D A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYDATAMHRAA 147
Query: 132 GKGAREVNTVLLYF 145
KG ++ +LL++
Sbjct: 148 AKGNLKMVHILLFY 161
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
D RTAL A H EIV+ LL G VN K G++ LH+A D
Sbjct: 39 DSRTALHWACSAGH------------TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 86
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143
+ IV+ LL GA N V+ + G TPL +A R V+L
Sbjct: 87 E-IVKALLGKGAQVNAVN-QNGCTPLHYAASKNRHEIAVML 125
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A + +VE+LL+ G VN+K ++ HIAA G EI
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AGWSPLHIAA---SAGRDEI 88
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
V LL GA VN + G T LH A + I LL GA + D A
Sbjct: 89 VKALLGKGAQVNAVNQNGCTPLHYAAS-KNRHEIAVMLLEGGANPDAKDHYEATAMHRAA 147
Query: 132 GKGAREVNTVLLYF 145
KG ++ +LLY+
Sbjct: 148 AKGNLKMIHILLYY 161
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK-- 69
+PL A +V+ LL G VN + +G T L A N IA +L+ GA
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 70 -------------------EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI--VRK 108
+++ +LL A N + G T LH+AC D++ + +
Sbjct: 134 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC---DEERVEEAKL 190
Query: 109 LLRHGAYYNVVDGKTGKTPLLHAGKG 134
L+ GA ++ K KTPL A G
Sbjct: 191 LVSQGASI-YIENKEEKTPLQVAKGG 215
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
G + V +L+ NGADVN G T LH+A R H + IV LL+HGA N D G+
Sbjct: 25 GQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLE--IVEVLLKHGADVNASD-SWGR 81
Query: 126 TPL-LHAGKGAREVNTVLLYF 145
TPL L A G E+ VLL +
Sbjct: 82 TPLHLAATVGHLEIVEVLLEY 102
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 60/115 (52%), Gaps = 19/115 (16%)
Query: 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N +TPL A ++ +VE LL+ G DVN GRT L
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSW-GRTPL-------- 84
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD--SIVRKL 109
H+AA + H EIV++LL+ GADVN + G TA ++ ++D I++KL
Sbjct: 85 -HLAATVGH---LEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN M G T L +A H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRI---LMANGADVN-AMDDAGVTPLHLAAKRGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL +GADVN + G T LH+A + IV LL +GA N D K
Sbjct: 61 ------EIVEVLLKHGADVNASDSWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KF 112
Query: 124 GKT 126
GKT
Sbjct: 113 GKT 115
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
D RTAL A H EIV+ LL G VN K G++ LH+A D
Sbjct: 40 DSRTALHWACSAGH------------TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRD 87
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143
+ IV+ LL GA N V+ + G TPL +A R V+L
Sbjct: 88 E-IVKALLGKGAQVNAVN-QNGCTPLHYAASKNRHEIAVML 126
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 57/134 (42%), Gaps = 14/134 (10%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A + +VE+LL+ G VN+K ++ HIAA G EI
Sbjct: 43 TALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AGWSPLHIAA---SAGRDEI 89
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
V LL GA VN + G T LH A + + I LL GA + D A
Sbjct: 90 VKALLGKGAQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAKDHYEATAMHRAA 148
Query: 132 GKGAREVNTVLLYF 145
KG ++ +LLY+
Sbjct: 149 AKGNLKMIHILLYY 162
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK-- 69
+PL A +V+ LL G VN + +G T L A N IA +L+ GA
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVN-AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 70 -------------------EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI--VRK 108
+++ +LL A N + G T LH+AC D++ + +
Sbjct: 135 AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC---DEERVEEAKL 191
Query: 109 LLRHGAYYNVVDGKTGKTPLLHAGKG 134
L+ GA ++ K KTPL A G
Sbjct: 192 LVSQGASI-YIENKEEKTPLQVAKGG 216
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A + + V+ LL G DVN + K DG T L +A H EI
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGH------------AEI 57
Query: 72 VDLLLDNGADVNFKSATGFTALHMACR 98
V LLL GADVN +S G T H+A +
Sbjct: 58 VKLLLAKGADVNARSKDGNTPEHLAKK 84
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 59/115 (51%), Gaps = 19/115 (16%)
Query: 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N +TPL A ++ +VE LL+ G DVN + + GRT L +A H
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD--SIVRKL 109
EIV++LL+ GADVN + G TA ++ ++D I++KL
Sbjct: 93 L------------EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN M G T L +A H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRI---LMANGADVN-AMDDAGVTPLHLAAKRGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL +GADVN + G T LH+A + IV LL +GA N D K
Sbjct: 61 ------EIVEVLLKHGADVNARDIWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KF 112
Query: 124 GKT 126
GKT
Sbjct: 113 GKT 115
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 51/115 (44%), Gaps = 22/115 (19%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--- 68
T L AV +N + + E LL G +VN K G+T L ++ F + ++ L+ HGA
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNVNTK-DFSGKTPLMWSIIFGYSEMSYFLLEHGANVN 128
Query: 69 ------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 105
EIV LL+ GAD++ + TG TA A F + I
Sbjct: 129 DRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVI 183
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 14/103 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+PL A + E LLR G + + K+D RT L +A H I
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGH------------ANI 82
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
V++LL +GADVN K TALH A H+ +V L+++GA
Sbjct: 83 VEVLLKHGADVNAKDMLKMTALHWATE-HNHQEVVELLIKYGA 124
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 5 ATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLI 64
A V+ TPL A + + +VE LL+ G DVN K L TAL A NH+ + LLI
Sbjct: 62 ARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLK-MTALHWATEHNHQEVVELLI 120
Query: 65 HHGA---------KEIVDLLLDNG 79
+GA K D+ +DNG
Sbjct: 121 KYGADVHTQSKFCKTAFDISIDNG 144
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 19/115 (16%)
Query: 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N +TPL A ++ +VE LL+ G DVN + GRT L +A H
Sbjct: 34 MANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLHLAATVGH 92
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD--SIVRKL 109
EIV++LL+ GADVN + G TA ++ ++D I++KL
Sbjct: 93 L------------EIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 135
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DVN M G T L +A H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRI---LMANGADVN-AMDDAGVTPLHLAAKRGHL------ 60
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
EIV++LL +GADVN G T LH+A + IV LL +GA N D K
Sbjct: 61 ------EIVEVLLKHGADVNASDIWGRTPLHLAATVGHLE-IVEVLLEYGADVNAQD-KF 112
Query: 124 GKT 126
GKT
Sbjct: 113 GKT 115
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 22/106 (20%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK-- 69
TPL A N +R+V+ LL+ G DV+ K K G L A + H + LL+ HGA
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDK-GGLVPLHNACSYGHYEVTELLLKHGACVN 118
Query: 70 -------------------EIVDLLLDNGADVNFKSATGFTALHMA 96
E+ LLL +GAD + G +A+ MA
Sbjct: 119 AMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
IV LLL +GADV+ K G LH AC + + + LL+HGA N +D TPL
Sbjct: 73 IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE-VTELLLKHGACVNAMD-LWQFTPLHE 130
Query: 131 AGKGAR-EVNTVLL 143
A R EV ++LL
Sbjct: 131 AASKNRVEVCSLLL 144
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAYY 116
H A +H K++ +LLL GA+VN K+ T LH+A R H+D ++ L +HGA
Sbjct: 216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND--VMEVLHKHGAKM 273
Query: 117 NVVDGKTGKTPLLHAG 132
N +D G+T L A
Sbjct: 274 NALDS-LGQTALHRAA 288
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 22/101 (21%)
Query: 16 AAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK------ 69
A++ ++ E LLR G +VNEK K D T L VA H + +L HGAK
Sbjct: 220 ASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS 278
Query: 70 ---------------EIVDLLLDNGADVNFKSATGFTALHM 95
+ LLL G+D + S GFTA M
Sbjct: 279 LGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQM 319
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 55 NHR-----HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL 109
NHR HIA++ G V+ LL NG+D N K G+T LH AC H +V L
Sbjct: 7 NHRGETLLHIASI---KGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACN-HGHLKVVELL 62
Query: 110 LRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLLYF 145
L+H A N G +PL A K G ++ +LL +
Sbjct: 63 LQHKALVNTT-GYQNDSPLHDAAKNGHVDIVKLLLSY 98
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 14/99 (14%)
Query: 22 NIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD 81
+I VEYLL+ G D N K G T L A NH H+ ++V+LLL + A
Sbjct: 22 DIPSVEYLLQNGSDPNVKDHA-GWTPLHEAC--NHGHL----------KVVELLLQHKAL 68
Query: 82 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 120
VN + LH A + D IV+ LL +GA N V+
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVD-IVKLLLSYGASRNAVN 106
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 50/115 (43%), Gaps = 22/115 (19%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +NV TPL AV ++ LV+ LL H DG+TAL +AV + I
Sbjct: 229 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 288
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
A LL GA +T L M R + D S+V+ LL HGA
Sbjct: 289 AELLCKRGA------------------STDCGDLVMTARRNYDHSLVKVLLSHGA 325
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 49/93 (52%), Gaps = 14/93 (15%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDL---LLDNGADVNFKSAT-GFTALHMACRF 99
GR A AV NH LLI E VDL LL+ GA+VNF+ G+T LH A +
Sbjct: 18 GRRA---AVEDNH-----LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM 69
Query: 100 HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG 132
+D IV LLRHGA V+ K G TP + A
Sbjct: 70 SRED-IVELLLRHGA-DPVLRKKNGATPFILAA 100
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 66/161 (40%), Gaps = 32/161 (19%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI-- 71
L AV + ++ LV+ LL G +VN + + G T L AV + I LL+ HGA +
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 72 -------------------VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
+ L L GADVN GFTA M + ++ L +
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKR 147
Query: 113 GAYYNVVDG---------KTGKTPLLHAG-KGAREVNTVLL 143
GA N+ K G T L+ A KG EV +LL
Sbjct: 148 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 37/155 (23%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK-- 69
TP A +++L++ L G DVNE G TA A + L GA
Sbjct: 94 TPFILAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 152
Query: 70 -----------------------------EIVDLLLDN-GADVNFKSATGFTALHMACRF 99
E++ +LLD GADVN G AL A
Sbjct: 153 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 212
Query: 100 HDD---DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
DD ++I LL HGA N V G+ GKTPL+ A
Sbjct: 213 SDDSDVEAITHLLLDHGADVN-VRGERGKTPLILA 246
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 37/151 (24%)
Query: 16 AAVWDNNIRLVEYLLRTGHDVN---------EKMKLDGRTALFVAVHFNHRHIAALLIHH 66
AAV+ ++ +++L + G +VN E+++ G TAL A H + +L+
Sbjct: 132 AAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 190
Query: 67 -GA-------------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFH 100
GA + I LLLD+GADVN + G T L +A
Sbjct: 191 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 250
Query: 101 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ R L + N D GKT LL A
Sbjct: 251 HLGLVQRLLEQEHIEINDTDS-DGKTALLLA 280
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 61/130 (46%), Gaps = 22/130 (16%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLD--GRTALFVAVHFNHRHIAALLIH 65
N+ TPL AV +V L+ G M LD G+TA A L
Sbjct: 44 NLRQTPLHLAVITTLPSVVRLLVTAG---ASPMALDRHGQTA------------AHLACE 88
Query: 66 HGAKEIVDLLLDNGA----DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 121
H + + LLD+ A D+ ++ G TALH+A ++ V+ LL GA + VD
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET-VQLLLERGADIDAVDI 147
Query: 122 KTGKTPLLHA 131
K+G++PL+HA
Sbjct: 148 KSGRSPLIHA 157
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 13/104 (12%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
LT L AV V+ LL G D++ GR+ L AV N + LL+ H
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH---- 172
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
GA+VN + +G +ALH A +VR L+R GA
Sbjct: 173 --------GANVNAQMYSGSSALHSAS-GRGLLPLVRTLVRSGA 207
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 75/161 (46%), Gaps = 28/161 (17%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIH------ 65
TPL AV +N+I + + L+ G D+N + + L+ +A +L H
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN 100
Query: 66 ---------------HGAKEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDS----I 105
G + V LLL++G D++F++ G+TAL A + + I
Sbjct: 101 KHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160
Query: 106 VRKLLRHGAYYNVVDGKTGKTPLLHAG-KGAREVNTVLLYF 145
V+ L+ +GA ++ D +G+T + +A KG E++ +L +
Sbjct: 161 VKLLMENGADQSIKD-NSGRTAMDYANQKGYTEISKILAQY 200
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVD 73
L AA + ++ E L T + V+E + +G T L +AVH N IA LI
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALI--------- 59
Query: 74 LLLDNGADVNFKSA 87
D GAD+N +++
Sbjct: 60 ---DRGADINLQNS 70
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 51 AVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT-GFTALHMACRFHDDDSIVRKL 109
AV NH I A + + ++V LL+ GA+VNF+ G+T LH A + +D IV L
Sbjct: 2 AVEDNHLLIKA--VQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED-IVELL 58
Query: 110 LRHGAYYNVVDGKTGKTPLLHAG 132
LRHGA V+ K G TP L A
Sbjct: 59 LRHGA-DPVLRKKNGATPFLLAA 80
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/161 (29%), Positives = 67/161 (41%), Gaps = 32/161 (19%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK---- 69
L AV + ++ LV+ LL G +VN + + G T L AV + I LL+ HGA
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 70 -----------------EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
+++ L L GADVN GFTA M + ++ L +
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKALKFLYKR 127
Query: 113 GAYYNVVDG---------KTGKTPLLHAG-KGAREVNTVLL 143
GA N+ K G T L+ A KG EV +LL
Sbjct: 128 GANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 60/155 (38%), Gaps = 37/155 (23%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK-- 69
TP A +++L++ L G DVNE G TA A + L GA
Sbjct: 74 TPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKVKALKFLYKRGANVN 132
Query: 70 -----------------------------EIVDLLLDN-GADVNFKSATGFTALHMACRF 99
E++ +LLD GADVN G AL A
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS 192
Query: 100 HDD---DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
DD ++I LL HGA N V G+ GKTPL+ A
Sbjct: 193 SDDSDVEAITHLLLDHGADVN-VRGERGKTPLILA 226
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +NV TPL AV ++ LV+ LL H DG+TAL +AV + I
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268
Query: 60 AALLIHHGA 68
A LL GA
Sbjct: 269 AELLCKRGA 277
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 61/151 (40%), Gaps = 37/151 (24%)
Query: 16 AAVWDNNIRLVEYLLRTGHDVN---------EKMKLDGRTALFVAVHFNHRHIAALLIHH 66
AAV+ ++ +++L + G +VN E+++ G TAL A H + +L+
Sbjct: 112 AAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170
Query: 67 -GA-------------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFH 100
GA + I LLLD+GADVN + G T L +A
Sbjct: 171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK 230
Query: 101 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ R L + N D GKT LL A
Sbjct: 231 HLGLVQRLLEQEHIEINDTD-SDGKTALLLA 260
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 5 ATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKL-DGRTALFVAVHFNHRHIAALL 63
A +L LC AV +I + G D+ EK+ L +G A+H R +
Sbjct: 125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 184
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
+H IVD L+ N +++ ++ G TALH C D+ ++ LLR A + + ++
Sbjct: 185 LH-----IVDFLVQNSGNLDKQTGKGSTALHYCC-LTDNAECLKLLLRGKASIEIAN-ES 237
Query: 124 GKTPL 128
G+TPL
Sbjct: 238 GETPL 242
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 3 SGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
+GA I+ + TPL A +N++ V+YL++ G V+ K +G T L +A H
Sbjct: 33 AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPK-DAEGSTCLHLAAKKGHY- 90
Query: 59 IAALLIHHGAKEIVDLLLDNGA-DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 117
E+V LL NG DVN + G+T + A + D +V+ LL G+ N
Sbjct: 91 -----------EVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD-LVKLLLSKGSDIN 138
Query: 118 VVDGKTGKTPLLHAGKGAREVNTVLL 143
+ D + A G ++ +LL
Sbjct: 139 IRDNEENICLHWAAFSGCVDIAEILL 164
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 117
H+AAL HG +++ LLL +GA+ ++A LH+AC+ +V+ LL A N
Sbjct: 91 HVAAL---HGRADLIPLLLKHGANAGARNADQAVPLHLACQ-QGHFQVVKCLLDSNAKPN 146
Query: 118 VVDGKTGKTPLLHAGKG 134
D +G TPL++A G
Sbjct: 147 KKD-LSGNTPLIYACSG 162
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 3 SGATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAAL 62
+GA + PL A + ++V+ LL + N+K L G T L A H
Sbjct: 112 AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKK-DLSGNTPLIYACSGGHH----- 165
Query: 63 LIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 122
E+V LLL +GA +N + G TALH A +V LL HGA V++ +
Sbjct: 166 -------ELVALLLQHGASINASNNKGNTALHEAV-IEKHVFVVELLLLHGASVQVLNKR 217
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 27/112 (24%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAK---------------------EIVDLLLDNGAD 81
DG + L VA + LL+ HGA ++V LLD+ A
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK 144
Query: 82 VNFKSATGFTALHMACR--FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
N K +G T L AC H+ +V LL+HGA N + K G T L A
Sbjct: 145 PNKKDLSGNTPLIYACSGGHHE---LVALLLQHGASINASNNK-GNTALHEA 192
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
+PL A + +VE L+ G +N + D T L H+AA HG ++
Sbjct: 40 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPL---------HLAA---SHGHRD 86
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
IV LL AD+N + G LH AC F D + L+ +GA ++ + K G+ P+
Sbjct: 87 IVQKLLQYKADINAVNEHGNVPLHYAC-FWGQDQVAEDLVANGALVSICN-KYGEMPVDK 144
Query: 131 AGKGAREV 138
A RE+
Sbjct: 145 AKAPLREL 152
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 72 VDLLLDNGA-DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-L 129
V L LDN D+N GF+ LH ACR ++V L+ GA NV++ + TPL L
Sbjct: 21 VRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARINVMN-RGDDTPLHL 78
Query: 130 HAGKGAREVNTVLLYFINEI 149
A G R++ LL + +I
Sbjct: 79 AASHGHRDIVQKLLQYKADI 98
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 15/128 (11%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
+PL A + +VE L+ G +N + D T L H+AA HG ++
Sbjct: 35 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPL---------HLAA---SHGHRD 81
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
IV LL AD+N + G LH AC F D + L+ +GA ++ + K G+ P+
Sbjct: 82 IVQKLLQYKADINAVNEHGNVPLHYAC-FWGQDQVAEDLVANGALVSICN-KYGEMPVDK 139
Query: 131 AGKGAREV 138
A RE+
Sbjct: 140 AKAPLREL 147
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 72 VDLLLDNGA-DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-L 129
V L LDN D+N GF+ LH ACR ++V L+ GA NV++ + TPL L
Sbjct: 16 VRLWLDNTENDLNQGDDHGFSPLHWACR-EGRSAVVEMLIMRGARINVMN-RGDDTPLHL 73
Query: 130 HAGKGAREVNTVLLYFINEI 149
A G R++ LL + +I
Sbjct: 74 AASHGHRDIVQKLLQYKADI 93
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADVN K G+T LH+A R IV LL+ GA N D K GKT
Sbjct: 13 GQDDEVRILMANGADVNAKDKDGYTPLHLAAR-EGHLEIVEVLLKAGADVNAQD-KFGKT 70
Query: 127 PL 128
Sbjct: 71 AF 72
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 1 MFSGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
M +GA +N + TPL A + ++ +VE LL+ G DVN + K G+TA +++ +
Sbjct: 22 MANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF-GKTAFDISIDNGN 80
Query: 57 RHIAALL 63
+A +L
Sbjct: 81 EDLAEIL 87
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 16/87 (18%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK 69
+L A D+ +R+ L+ G DVN K K DG T L +A H
Sbjct: 5 KLLEAARAGQDDEVRI---LMANGADVNAKDK-DGYTPLHLAAREGHL------------ 48
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMA 96
EIV++LL GADVN + G TA ++
Sbjct: 49 EIVEVLLKAGADVNAQDKFGKTAFDIS 75
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G E V LL+ GAD+N+ + G TALH AC D+ +V+ L+ +GA N D + G
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQAC-IDDNVDMVKFLVENGANINQPDNE-GWI 108
Query: 127 PLLHAG 132
P LHA
Sbjct: 109 P-LHAA 113
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 23 IRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADV 82
+R L +GH + + G TAL H+AA G E++ LL+ DV
Sbjct: 178 LRDARQWLNSGHINDVRHAKSGGTAL---------HVAAA---KGYTEVLKLLIQARYDV 225
Query: 83 NFKSATGFTALHMACRFHDDDSI 105
N K G+T LH A + +++
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEAC 248
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA IN LT L A D+N+ +V++L+ G ++N+ +G L A + I
Sbjct: 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN-EGWIPLHAAASCGYLDI 121
Query: 60 AALLIHHGA 68
A LI GA
Sbjct: 122 AEYLISQGA 130
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
N TPL AAV + + + + LLR ++N +M DG T L +A
Sbjct: 82 NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMH-DGTTPLILAARL------------ 128
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
+ +V+ L+ AD+N +G TALH A ++ ++ V LL H A + D K +T
Sbjct: 129 AIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEA-VNILLMHHANRDAQDDKD-ET 186
Query: 127 PL-LHAGKGAREVNTVLL 143
PL L A +G+ E + LL
Sbjct: 187 PLFLAAREGSYEASKALL 204
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 20 DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79
D+ +++ LL G ++N M G T+L L + LLD G
Sbjct: 27 DSTAQVISDLLAQGAELNATMDKTGETSLH------------LAARFARADAAKRLLDAG 74
Query: 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137
AD N + TG T LH A D + + LLR+ A G TPL+ A + A E
Sbjct: 75 ADANSQDNTGRTPLHAAVAA-DAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE 131
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 61/140 (43%), Gaps = 15/140 (10%)
Query: 9 VELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68
+ LT L ++I V L R G ++N K G+TAL +AV HG
Sbjct: 149 IMLTALATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVS------------HGR 195
Query: 69 KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
++V LL ADVN + G TAL AC H I LL + + + G T L
Sbjct: 196 VDVVKALLACEADVNVQDDDGSTALMCACE-HGHKEIAGLLLAVPSCDISLTDRDGSTAL 254
Query: 129 LHA-GKGAREVNTVLLYFIN 147
+ A G E+ ++L +N
Sbjct: 255 MVALDAGQSEIASMLYSRMN 274
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVH-------------F 54
N++ TPL AV N + E LL G D E G T L +A
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSC 101
Query: 55 NHRHIAALL----------IH----HGAKEIVDLLLDNGADVNFK-SATGFTALHMACRF 99
H+ ++L +H HG IV+LL+ GADVN + G TALH+A
Sbjct: 102 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 161
Query: 100 HDDDSIVRKLLRHGAYYNVVDGKTGKTP 127
+ D +V LL+ GA N V + G +P
Sbjct: 162 QNPD-LVSLLLKCGADVNRVTYQ-GYSP 187
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/148 (31%), Positives = 64/148 (43%), Gaps = 31/148 (20%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVH-------------F 54
N++ TPL AV N + E LL G D E G T L +A
Sbjct: 40 NLQQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSC 98
Query: 55 NHRHIAALL----------IH----HGAKEIVDLLLDNGADVNFK-SATGFTALHMACRF 99
H+ ++L +H HG IV+LL+ GADVN + G TALH+A
Sbjct: 99 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDL 158
Query: 100 HDDDSIVRKLLRHGAYYNVVDGKTGKTP 127
+ D +V LL+ GA N V + G +P
Sbjct: 159 QNPD-LVSLLLKCGADVNRVTYQ-GYSP 184
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 66 HGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
HG +V+ LL NGAD +AL +AC D IV+ LL G N D G
Sbjct: 62 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD-IVKMLLDCGVDVNEYD-WNGG 119
Query: 126 TPLLHAGKG 134
TPLL+A G
Sbjct: 120 TPLLYAVHG 128
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 25 LVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNF 84
+V+ LL G DVNE +G T L AVH NH + V +LL++GAD
Sbjct: 100 IVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNH------------VKCVKMLLESGADPTI 146
Query: 85 KSATGFTALHMA 96
++ +G+ ++ +A
Sbjct: 147 ETDSGYNSMDLA 158
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 28/110 (25%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A I +VE+LL+ G D ++ GR + +L G +I
Sbjct: 54 TPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESAL-----------SLACSKGYTDI 100
Query: 72 VDLLLDNGADVNFKSATGFTAL-------HMACRFHDDDSIVRKLLRHGA 114
V +LLD G DVN G T L H+ C V+ LL GA
Sbjct: 101 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC--------VKMLLESGA 142
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 66 HGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
HG +V+ LL NGAD +AL +AC D IV+ LL G N D G
Sbjct: 44 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD-IVKMLLDCGVDVNEYD-WNGG 101
Query: 126 TPLLHAGKG 134
TPLL+A G
Sbjct: 102 TPLLYAVHG 110
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 25 LVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNF 84
+V+ LL G DVNE +G T L AVH NH + V +LL++GAD
Sbjct: 82 IVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHV------------KCVKMLLESGADPTI 128
Query: 85 KSATGFTALHMA 96
++ +G+ ++ +A
Sbjct: 129 ETDSGYNSMDLA 140
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 28/110 (25%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A I +VE+LL+ G D ++ GR + +L G +I
Sbjct: 36 TPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESAL-----------SLACSKGYTDI 82
Query: 72 VDLLLDNGADVNFKSATGFTAL-------HMACRFHDDDSIVRKLLRHGA 114
V +LLD G DVN G T L H+ C V+ LL GA
Sbjct: 83 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC--------VKMLLESGA 124
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL AV + +V L G D+N+ GRT L +AV A +
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ------------AASV 207
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR-HGA 114
++LLL GAD + G T L A + I+ +LLR HGA
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSA--LLRPNPILARLLRAHGA 249
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF 99
G+TAL H+AA+L G V+ L GA V G TALH+ACR
Sbjct: 45 GQTAL---------HLAAIL---GEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
G T LH+A H D +VR L GA N + G+TPL
Sbjct: 158 GHTPLHVAV-IHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 46/104 (44%), Gaps = 15/104 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL AV + +V L G D+N+ GRT L +AV A +
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ------------AASV 207
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR-HGA 114
++LLL GAD + G T L A + I+ +LLR HGA
Sbjct: 208 LELLLKAGADPTARMYGGRTPLGSA--LLRPNPILARLLRAHGA 249
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF 99
G+TAL H+AA+L G V+ L GA V G TALH+ACR
Sbjct: 45 GQTAL---------HLAAIL---GEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
G T LH+A H D +VR L GA N + G+TPL
Sbjct: 158 GHTPLHVAV-IHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 66 HGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
HG +V+ LL NGAD +AL +AC D IV+ LL G N D G
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD-IVKMLLDCGVDVNEYD-WNGG 103
Query: 126 TPLLHAGKG 134
TPLL+A G
Sbjct: 104 TPLLYAVHG 112
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 38/72 (52%), Gaps = 13/72 (18%)
Query: 25 LVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNF 84
+V+ LL G DVNE +G T L AVH NH + V +LL++GAD
Sbjct: 84 IVKMLLDCGVDVNE-YDWNGGTPLLYAVHGNHV------------KCVKMLLESGADPTI 130
Query: 85 KSATGFTALHMA 96
++ +G+ ++ +A
Sbjct: 131 ETDSGYNSMDLA 142
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 45/110 (40%), Gaps = 28/110 (25%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A I +VE+LL+ G D ++ GR + +L G +I
Sbjct: 38 TPLMWAAAHGQIAVVEFLLQNGAD--PQLLGKGRESAL-----------SLACSKGYTDI 84
Query: 72 VDLLLDNGADVNFKSATGFTAL-------HMACRFHDDDSIVRKLLRHGA 114
V +LLD G DVN G T L H+ C V+ LL GA
Sbjct: 85 VKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKC--------VKMLLESGA 126
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADV K G T LH+A R + +V+ LL GA N D K GKT
Sbjct: 17 GQDDEVRILMANGADVAAKDKNGSTPLHLAAR-NGHLEVVKLLLEAGADVNAQD-KFGKT 74
Query: 127 P 127
Sbjct: 75 A 75
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DV K K +G T L +A H
Sbjct: 3 GSDLGKKLLEAARAGQDDEVRI---LMANGADVAAKDK-NGSTPLHLAARNGHL------ 52
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMA 96
E+V LLL+ GADVN + G TA ++
Sbjct: 53 ------EVVKLLLEAGADVNAQDKFGKTAFDIS 79
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
IVD L+ GA+VN + G+T LH A +D I L++HGA
Sbjct: 69 IVDFLITAGANVNSPDSHGWTPLHCAASC-NDTVICMALVQHGA 111
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 117
H+A + + + +VD ++ NG ++ K+A G TALH A ++ D + + LL+ A
Sbjct: 176 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL-KLLLKGRALVG 234
Query: 118 VVDGKTGKTPL 128
V+ + G+T L
Sbjct: 235 TVN-EAGETAL 244
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 34.7 bits (78), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 117
H+A + + + +VD ++ NG ++ K+A G TALH A ++ D + + LL+ A
Sbjct: 195 HLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCL-KLLLKGRALVG 253
Query: 118 VVDGKTGKTPL 128
V+ + G+T L
Sbjct: 254 TVN-EAGETAL 263
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
I D + + N TG TALH+A R+ D+ ++LL A N+ D G+TP LH
Sbjct: 39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 95
Query: 131 AGKGAREVNTVLLYFINEIFKLMANNDTTILD 162
A A +F+++ N T LD
Sbjct: 96 AAVSAD---------AQGVFQILIRNRATDLD 118
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 18/143 (12%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
N+ TPL AAV + + + L+R D++ +M DG T L +A
Sbjct: 88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARL------------ 134
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
+ +++ L+++ ADVN G +ALH A ++ LL++GA ++ + + +T
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNNRE-ET 192
Query: 127 PL-LHAGKGAREVNTVLL-YFIN 147
PL L A +G+ E VLL +F N
Sbjct: 193 PLFLAAREGSYETAKVLLDHFAN 215
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
I D + + N TG TALH+A R+ D+ ++LL A N+ D G+TP LH
Sbjct: 40 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 96
Query: 131 AGKGAREVNTVLLYFINEIFKLMANNDTTILD 162
A A +F+++ N T LD
Sbjct: 97 AAVSAD---------AQGVFQILIRNRATDLD 119
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 18/143 (12%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
N+ TPL AAV + + + L+R D++ +M DG T L +A
Sbjct: 89 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARL------------ 135
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
+ +++ L+++ ADVN G +ALH A ++ LL++GA ++ + + +T
Sbjct: 136 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNNRE-ET 193
Query: 127 PL-LHAGKGAREVNTVLL-YFIN 147
PL L A +G+ E VLL +F N
Sbjct: 194 PLFLAAREGSYETAKVLLDHFAN 216
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
I D + + N TG TALH+A R+ D+ ++LL A N+ D G+TP LH
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 63
Query: 131 AGKGAREVNTVLLYFINEIFKLMANNDTTILD 162
A A +F+++ N T LD
Sbjct: 64 AAVSAD---------AQGVFQILIRNRATDLD 86
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 71/144 (49%), Gaps = 18/144 (12%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
N+ TPL AAV + + + L+R D++ +M DG T L +A
Sbjct: 56 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARL------------ 102
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
+ +++ L+++ ADVN G +ALH A ++ LL++GA ++ + + +T
Sbjct: 103 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNNRE-ET 160
Query: 127 PL-LHAGKGAREVNTVLL-YFINE 148
PL L A +G+ E VLL +F N
Sbjct: 161 PLFLAAREGSYETAKVLLDHFANR 184
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 22/101 (21%)
Query: 13 PLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL--IHHGAKE 70
PL A + ++E+LL G D+N K HI LL ++ G
Sbjct: 38 PLHYAADCGQLEILEFLLLKGADINAPDK---------------HHITPLLSAVYEGHVS 82
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 111
V LLL GAD K G TAL D+ ++ LL+
Sbjct: 83 CVKLLLSKGADKTVKGPDGLTALEAT-----DNQAIKALLQ 118
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVH---FNHRHIAALLIHHGA 68
T L AV + N+ LV LL G V+ + + H + H + G+
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARAT---GSVFHYRPHNLIYYGEHPLSFAACVGS 133
Query: 69 KEIVDLLLDNGADVNFKSATGFTALHM 95
+EIV LL+++GAD+ + + G T LH+
Sbjct: 134 EEIVRLLIEHGADIRAQDSLGNTVLHI 160
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 60/147 (40%), Gaps = 19/147 (12%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
TPL A I V +LL G D + K + +AL +A G +
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLAST------------GGYTD 83
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL-L 129
IV LLL+ D+N G T L A R + V LL GA + +G TP+ L
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVR-GNHVKCVEALLARGADLT-TEADSGYTPMDL 141
Query: 130 HAGKGAREVNTVLLYFINEIFKLMANN 156
G R+V V+ N I KL +N
Sbjct: 142 AVALGYRKVQQVIE---NHILKLFQSN 165
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G + V +L+ NGADV K G T LH+A R + +V+ LL GA D K GKT
Sbjct: 35 GQDDEVRILMANGADVAAKDKNGSTPLHLAAR-NGHLEVVKLLLEAGADVXAQD-KFGKT 92
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 16/100 (16%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + +L A D+ +R+ L+ G DV K K +G T L +A H
Sbjct: 21 GSDLGKKLLEAARAGQDDEVRI---LMANGADVAAKDK-NGSTPLHLAARNGHL------ 70
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 103
E+V LLL+ GADV + G TA ++ ++D
Sbjct: 71 ------EVVKLLLEAGADVXAQDKFGKTAFDISIDNGNED 104
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 22/101 (21%)
Query: 13 PLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL--IHHGAKE 70
PL A + ++E+LL G D+N K HI LL ++ G
Sbjct: 43 PLHYAADCGQLEILEFLLLKGADINAPDK---------------HHITPLLSAVYEGHVS 87
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 111
V LLL GAD K G TA D+ ++ LL+
Sbjct: 88 CVKLLLSKGADKTVKGPDGLTAFEAT-----DNQAIKALLQ 123
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A N++ E+LL+ G +VN+ GR L H A +L H G +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPL---------HHATILGHTG---L 283
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
L L GAD+ + + G L +A + D + LLR K A
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVT--LLR-----------LAKMREAEA 330
Query: 132 GKGAREVNTVLLYFINEIFKLMANNDTTILDR 163
+G T L F + F LMA++D L R
Sbjct: 331 AQGQAGDETYLDIFRD--FSLMASDDPEKLSR 360
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A N++ E+LL+ G +VN+ GR L H A +L H G +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPL---------HHATILGHTG---L 283
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
L L GAD+ + + G L +A + D + LLR K A
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVT--LLR-----------LAKMREAEA 330
Query: 132 GKGAREVNTVLLYFINEIFKLMANNDTTILDR 163
+G T L F + F LMA++D L R
Sbjct: 331 AQGQAGDETYLDIFRD--FSLMASDDPEKLSR 360
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 28/152 (18%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A N++ E+LL+ G +VN+ GR L H A +L H G +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADSA-GRGPL---------HHATILGHTG---L 283
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
L L GAD+ + + G L +A + D + LLR K A
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANADIVT--LLR-----------LAKMREAEA 330
Query: 132 GKGAREVNTVLLYFINEIFKLMANNDTTILDR 163
+G T L F + F LMA++D L R
Sbjct: 331 AQGQAGDETYLDIFRD--FSLMASDDPEKLSR 360
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
+T L A +N I LV+Y + G V++ G +H+ R G
Sbjct: 43 VTLLHWAAINNRIDLVKYYISKGAIVDQL----GGDLNSTPLHWATRQ--------GHLS 90
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
+V L+ GAD + G + +H+A +F SIV L+ G +++D + G TPL+
Sbjct: 91 MVVQLMKYGADPSLIDGEGCSCIHLAAQF-GHTSIVAYLIAKGQDVDMMD-QNGMTPLMW 148
Query: 131 AGKGAREVNTVLL 143
A V+ L
Sbjct: 149 AAYRTHSVDPTRL 161
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
I D + + N TG TALH+A + D+ ++LL A N+ D G+TP LH
Sbjct: 39 ISDFIYQGASLHNQTDRTGATALHLAAAYSRSDA-AKRLLEASADANIQD-NMGRTP-LH 95
Query: 131 AGKGAREVNTVLLYFINEIFKLMANNDTTILD 162
A A +F+++ N T LD
Sbjct: 96 AAVSAD---------AQGVFQILIRNRATDLD 118
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 18/143 (12%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
N+ TPL AAV + + + L+R D++ +M DG T L +A
Sbjct: 88 NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARL------------ 134
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
+ +++ L+++ ADVN G +ALH A ++ LL++GA ++ + + +T
Sbjct: 135 AVEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNNRE-ET 192
Query: 127 PL-LHAGKGAREVNTVLL-YFIN 147
PL L A +G+ E VLL +F N
Sbjct: 193 PLFLAAREGSYETAKVLLDHFAN 215
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
I D + + N TG TALH+A R+ D+ ++LL A + D G+TP LH
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDA-AKRLLEASADAXIQDN-MGRTP-LH 60
Query: 131 AGKGAREVNTVLLYFINEIFKLMANNDTTILD 162
A A +F+++ N T LD
Sbjct: 61 AAVSAD---------AQGVFQILLRNRATDLD 83
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 71/143 (49%), Gaps = 18/143 (12%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
N+ TPL AAV + + + LLR D++ +M DG T L +A
Sbjct: 53 NMGRTPLHAAVSADAQGVFQILLRNRATDLDARMH-DGTTPLILAARL------------ 99
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
+ +++ L+++ ADVN G +ALH A ++ LL++GA ++ + K +T
Sbjct: 100 ALEGMLEDLINSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNNKE-ET 157
Query: 127 PL-LHAGKGAREVNTVLL-YFIN 147
PL L A +G+ E VLL +F N
Sbjct: 158 PLFLAAREGSYETAKVLLDHFAN 180
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 31.2 bits (69), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 75/190 (39%), Gaps = 39/190 (20%)
Query: 33 GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHG-----AKEIVDLLLDNGADVNFKSA 87
GH +E K+ R A + +F R + + G A+E+V LL+ AD F
Sbjct: 95 GH-YSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGHVLSEARELVALLVRGSADGAFLDP 153
Query: 88 TGFTALHMA---------CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGA-RE 137
T + +A CR+ DD R+LL H + G+T G G+ +
Sbjct: 154 RPLTVVAVANVMSAVCFGCRYSHDDPEFRELLSHNEEF----GRT-------VGAGSLVD 202
Query: 138 VNTVLLYFIN-------EIFKLMANNDTTILDR-LDEMKSLILEVTKEFGPGDYNNFSLL 189
V L YF N E +L N ILD+ L +SL P D + +L
Sbjct: 203 VMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHCESL----RPGAAPRDMMDAFIL 258
Query: 190 KVAKNDAGET 199
K AG++
Sbjct: 259 SAEKKAAGDS 268
>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33
Length = 227
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 86 SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYF 145
SAT + ++ A + I R+L+ HG ++ +D + ++ L A +R VN L F
Sbjct: 145 SATPYPSVDAALNQSAEAEITRELVYHGPPFSNLDEELQES--LEAYLESRGVNEELASF 202
Query: 146 INEIFKLMANNDTTILDRLDEMKSLI 171
I+ + NN+ + L++MK
Sbjct: 203 ISAYSEFKENNE--YISWLEKMKKFF 226
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 60/154 (38%), Gaps = 33/154 (21%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
TPL A I V +LL G D + K + +AL +A G +
Sbjct: 37 FTPLIWASAFGEIETVRFLLEWGADPHILAK-ERESALSLAST------------GGYTD 83
Query: 71 IVDLLLDNGADVNFKSATGFTAL-------HMACRFHDDDSIVRKLLRHGAYYNVVDGKT 123
IV LLL+ D+N G T L H+ C V LL GA + +
Sbjct: 84 IVGLLLERDVDINIYDWNGGTPLLYAVHGNHVKC--------VEALLARGADLT-TEADS 134
Query: 124 GKTPL-LHAGKGAREVNTVLLYFINEIFKLMANN 156
G TP+ L G R+V V+ N I KL +N
Sbjct: 135 GYTPMDLAVALGYRKVQQVIE---NHILKLFQSN 165
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 66 HGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
HG + + L+ G VN +A + LH AC S V+ LL+HGA N V
Sbjct: 13 HGHQLSLRNLISQGWAVNIITADHVSPLHEAC-LGGHLSCVKILLKHGAQVNGVTADW-H 70
Query: 126 TPLLHA 131
TPL +A
Sbjct: 71 TPLFNA 76
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 54 FNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 113
++ H AA+ HG + + L+ G VN +A + LH AC S V+ LL+HG
Sbjct: 60 WSPMHEAAI---HGHQLSLRNLISQGWAVNIITADHVSPLHEAC-LGGHLSCVKILLKHG 115
Query: 114 AYYNVVDGKTGKTPLLHA 131
A N V TPL +A
Sbjct: 116 AQVNGVTADW-HTPLFNA 132
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A + V+ LL +G DVN+ G+ + AV + ++E+
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQG---KGQDSPLHAV-----------VRTASEEL 237
Query: 72 VDLLLDNGADVNFKSATG 89
LL+D GAD K+A G
Sbjct: 238 ACLLMDFGADTQAKNAEG 255
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 48 LFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 107
+ A H + H A L H V +LL +GA VN +A T L AC D V
Sbjct: 87 IITADHVSPLHEACLGGH---LSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWD-CVN 142
Query: 108 KLLRHGA 114
LL+HGA
Sbjct: 143 LLLQHGA 149
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF 99
H+AA G + V L++ G ++ G TALH+AC+F
Sbjct: 25 HVAA---RKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF 63
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G EI LL GA+ + K TGF +H A R D++ + LL A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTL-QTLLEFQADVNIEDNE-GNL 105
Query: 127 PLLHAGK 133
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 24 RLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVN 83
+ V L G D++ + G TAL H+AA + E+V+ L++ GAD+
Sbjct: 91 KCVRLLAEAGADLDHRDMRGGLTAL---------HMAAGYVR---PEVVEALVELGADIE 138
Query: 84 FKSATGFTALHMA 96
+ G TAL +A
Sbjct: 139 VEDERGLTALELA 151
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 12/73 (16%)
Query: 24 RLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVN 83
+ V L G D++ + G TAL H+AA + E+V+ L++ GAD+
Sbjct: 90 KCVRLLAEAGADLDHRDMRGGLTAL---------HMAAGYVR---PEVVEALVELGADIE 137
Query: 84 FKSATGFTALHMA 96
+ G TAL +A
Sbjct: 138 VEDERGLTALELA 150
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 67 GAKEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
G+ ++++LL G + VN++ G+T L A D+ V + ++GA Y++VD K K
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210
Query: 126 T 126
Sbjct: 211 A 211
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 67 GAKEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
G+ ++++LL G + VN++ G+T L A D+ V + ++GA Y++VD K K
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210
Query: 126 T 126
Sbjct: 211 A 211
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 67 GAKEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
G+ ++++LL G + VN++ G+T L A D+ V + ++GA Y++VD K K
Sbjct: 151 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAK 210
Query: 126 T 126
Sbjct: 211 A 211
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G EI LL GA+ + K TGF +H A R D++ + LL + A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLENQADVNIEDNE-GNL 105
Query: 127 PLLHAGK 133
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 12/85 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A +N +V+YL+ +K DG+T + +A G E+
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAA------------QEGRIEV 328
Query: 72 VDLLLDNGADVNFKSATGFTALHMA 96
V L+ GA V AT TA +A
Sbjct: 329 VXYLIQQGASVEAVDATDHTARQLA 353
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G EI LL GA+ + K TGF +H A R D++ + LL A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLEFQADVNIEDNE-GNL 105
Query: 127 PLLHAGK 133
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
G EI LL GA+ + K TGF +H A R D++ + LL A N+ D + G
Sbjct: 48 GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLEFQADVNIEDNE-GNL 105
Query: 127 PLLHAGK 133
PL A K
Sbjct: 106 PLHLAAK 112
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 13/124 (10%)
Query: 204 FFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK-NDAGETILDIAKKR 262
F LIG ILD+LD + I +E K F N + K+ + N + L
Sbjct: 99 FLYLIG-----ILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTV 153
Query: 263 GFPXXXXXXXXXADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGET 322
G P A NN T R DE +I K+FG SL + + D E
Sbjct: 154 GVPNSRLRYYCTARRNNLTWPFKRRDE---IITRLPKDFGVPH----SLESIIEEDVDEK 206
Query: 323 ILGP 326
L P
Sbjct: 207 FLVP 210
>pdb|2NRH|A Chain A, Crystal Structure Of Conserved Putative Baf Family
Transcriptional Activator From Campylobacter Jejuni
pdb|2NRH|B Chain B, Crystal Structure Of Conserved Putative Baf Family
Transcriptional Activator From Campylobacter Jejuni
Length = 219
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 28 YLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIV 72
YLL N+K+ G F+A +F+H LLI G K+I+
Sbjct: 159 YLLIKDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKII 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,370,840
Number of Sequences: 62578
Number of extensions: 439051
Number of successful extensions: 1458
Number of sequences better than 100.0: 112
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 972
Number of HSP's gapped (non-prelim): 264
length of query: 338
length of database: 14,973,337
effective HSP length: 99
effective length of query: 239
effective length of database: 8,778,115
effective search space: 2097969485
effective search space used: 2097969485
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)