Query psy5573
Match_columns 338
No_of_seqs 203 out of 2412
Neff 10.6
Searched_HMMs 29240
Date Fri Aug 16 20:57:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5573.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5573hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.3E-44 7.7E-49 327.2 28.7 322 2-327 2-396 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 7.8E-44 2.7E-48 323.7 29.4 294 2-298 35-401 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.7E-39 5.7E-44 285.2 24.5 261 10-303 25-329 (337)
4 1yyh_A HN1;, notch 1, ankyrin 100.0 6.3E-39 2.1E-43 270.2 19.6 228 6-333 2-248 (253)
5 1wdy_A 2-5A-dependent ribonucl 100.0 6.5E-38 2.2E-42 268.1 25.6 257 10-329 5-274 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 1.2E-37 4E-42 274.5 24.6 266 10-318 24-323 (351)
7 2fo1_E LIN-12 protein; beta-ba 100.0 2.1E-38 7.1E-43 281.9 18.6 266 10-329 94-367 (373)
8 3b7b_A Euchromatic histone-lys 100.0 4.3E-37 1.5E-41 256.3 22.2 213 10-322 11-224 (237)
9 2xai_A ASB-9, ankyrin repeat a 100.0 3.5E-37 1.2E-41 260.7 21.8 236 10-324 3-254 (261)
10 1oy3_D Transcription factor in 100.0 9E-37 3.1E-41 260.8 20.4 235 10-321 9-271 (282)
11 1s70_B 130 kDa myosin-binding 100.0 4.6E-37 1.6E-41 265.1 18.6 235 10-318 40-275 (299)
12 1k1a_A B-cell lymphoma 3-encod 100.0 8E-37 2.7E-41 255.2 19.2 220 10-330 9-238 (241)
13 3d9h_A CDNA FLJ77766, highly s 100.0 1.9E-36 6.6E-41 259.4 20.7 240 10-330 15-275 (285)
14 3aji_A 26S proteasome non-ATPa 100.0 7.1E-36 2.4E-40 247.9 20.8 218 10-327 6-224 (231)
15 4b93_B Ankyrin repeat domain-c 100.0 9.9E-37 3.4E-41 258.5 15.0 212 10-320 11-230 (269)
16 1wdy_A 2-5A-dependent ribonucl 100.0 5.9E-35 2E-39 249.7 24.6 237 2-306 26-284 (285)
17 2dzn_A Probable 26S proteasome 100.0 8.2E-36 2.8E-40 247.0 18.1 211 10-319 2-219 (228)
18 3utm_A Tankyrase-1; tankyrase, 100.0 9.4E-35 3.2E-39 255.9 25.8 268 3-320 47-351 (351)
19 3ljn_A Hypothetical protein; a 100.0 4.6E-36 1.6E-40 266.1 17.4 224 10-330 20-266 (364)
20 2f8y_A Notch homolog 1, transl 100.0 3.6E-34 1.2E-38 236.4 22.4 195 1-328 11-211 (223)
21 3eu9_A Huntingtin-interacting 100.0 7.9E-34 2.7E-38 236.6 23.7 224 10-332 9-234 (240)
22 3kea_A K1L; tropism, ANK repea 100.0 9.8E-35 3.4E-39 248.7 13.7 219 10-309 31-255 (285)
23 1sw6_A Regulatory protein SWI6 100.0 5E-35 1.7E-39 255.4 10.7 246 1-318 39-326 (327)
24 2rfa_A Transient receptor pote 100.0 2.3E-33 8E-38 232.9 19.8 211 10-331 3-220 (232)
25 2xai_A ASB-9, ankyrin repeat a 100.0 3.2E-33 1.1E-37 236.3 18.7 199 43-319 2-210 (261)
26 3ljn_A Hypothetical protein; a 100.0 3.9E-34 1.3E-38 253.6 10.2 250 1-324 40-305 (364)
27 3hra_A Ankyrin repeat family p 100.0 7.7E-32 2.6E-36 218.7 22.4 191 10-328 5-198 (201)
28 1yyh_A HN1;, notch 1, ankyrin 100.0 3E-32 1E-36 229.3 20.3 194 1-271 43-242 (253)
29 4gpm_A Engineered protein OR26 100.0 3.1E-32 1.1E-36 214.1 18.7 112 12-138 6-117 (169)
30 4g8k_A 2-5A-dependent ribonucl 100.0 7E-32 2.4E-36 236.6 22.5 243 1-280 45-330 (337)
31 3d9h_A CDNA FLJ77766, highly s 100.0 9E-32 3.1E-36 230.3 21.5 213 10-302 59-281 (285)
32 1oy3_D Transcription factor in 100.0 6.1E-32 2.1E-36 230.8 19.1 229 37-329 3-246 (282)
33 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-32 8.3E-37 242.7 16.9 215 10-268 125-362 (373)
34 2etb_A Transient receptor pote 100.0 1.1E-32 3.8E-37 232.4 11.4 209 10-330 2-243 (256)
35 1ikn_D Protein (I-kappa-B-alph 100.0 4.5E-33 1.5E-37 231.9 6.4 211 10-319 8-230 (236)
36 3b7b_A Euchromatic histone-lys 100.0 6.3E-31 2.1E-35 218.9 18.2 197 2-275 32-234 (237)
37 3aji_A 26S proteasome non-ATPa 100.0 6.8E-31 2.3E-35 217.8 18.0 189 10-275 40-229 (231)
38 3eu9_A Huntingtin-interacting 100.0 3E-30 1E-34 214.9 21.2 191 2-268 30-226 (240)
39 3kea_A K1L; tropism, ANK repea 100.0 3E-31 1E-35 227.0 15.3 219 20-328 9-241 (285)
40 2pnn_A Transient receptor pote 100.0 1.4E-31 4.7E-36 227.8 12.6 231 10-312 13-271 (273)
41 4gpm_A Engineered protein OR26 100.0 1.3E-30 4.4E-35 204.9 16.0 135 1-150 24-162 (169)
42 1k1a_A B-cell lymphoma 3-encod 100.0 6.6E-31 2.3E-35 219.2 15.0 194 3-268 35-232 (241)
43 3jxi_A Vanilloid receptor-rela 100.0 1.8E-31 6.2E-36 225.4 10.6 210 10-331 5-248 (260)
44 2vge_A RELA-associated inhibit 100.0 1.2E-32 3.9E-37 228.0 1.6 136 1-150 5-149 (229)
45 1ikn_D Protein (I-kappa-B-alph 100.0 3E-31 1E-35 220.9 8.0 197 42-328 6-204 (236)
46 1s70_B 130 kDa myosin-binding 100.0 8.3E-30 2.8E-34 219.6 15.3 240 16-329 4-253 (299)
47 3v30_A DNA-binding protein rfx 100.0 1.7E-29 5.8E-34 199.7 15.0 113 10-137 2-115 (172)
48 4hbd_A KN motif and ankyrin re 100.0 3E-30 1E-34 219.7 11.0 190 10-332 76-274 (276)
49 2dzn_A Probable 26S proteasome 100.0 2E-29 7E-34 208.5 14.5 177 10-263 36-219 (228)
50 2rfa_A Transient receptor pote 100.0 9.6E-29 3.3E-33 205.0 18.6 120 4-138 27-168 (232)
51 3v31_A Ankyrin repeat family A 100.0 3.7E-28 1.3E-32 191.1 17.6 113 10-137 3-115 (167)
52 2f8y_A Notch homolog 1, transl 100.0 8.3E-28 2.9E-32 198.1 19.8 121 2-137 46-171 (223)
53 1ihb_A P18-INK4C(INK6), cyclin 100.0 4.9E-28 1.7E-32 189.4 17.1 113 10-138 5-117 (162)
54 4b93_B Ankyrin repeat domain-c 100.0 1.1E-28 3.8E-33 209.0 13.7 174 10-206 52-227 (269)
55 3hra_A Ankyrin repeat family p 100.0 1.2E-27 4E-32 194.0 19.1 119 4-136 29-152 (201)
56 2rfm_A Putative ankyrin repeat 100.0 4.7E-28 1.6E-32 195.0 16.3 113 10-137 35-147 (192)
57 2etb_A Transient receptor pote 100.0 3.2E-28 1.1E-32 205.0 14.3 121 3-137 28-187 (256)
58 3jxi_A Vanilloid receptor-rela 100.0 5.6E-28 1.9E-32 204.0 14.1 119 3-136 31-188 (260)
59 2pnn_A Transient receptor pote 100.0 2.2E-28 7.6E-33 208.0 11.2 223 33-329 3-254 (273)
60 1sw6_A Regulatory protein SWI6 100.0 1E-28 3.4E-33 215.5 9.2 199 13-263 100-327 (327)
61 3f6q_A Integrin-linked protein 100.0 1.9E-27 6.4E-32 189.3 15.1 113 10-137 5-118 (179)
62 1d9s_A Cyclin-dependent kinase 99.9 1.8E-27 6.1E-32 180.6 12.3 126 4-145 2-132 (136)
63 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.4E-26 4.7E-31 179.9 15.4 112 10-137 2-114 (156)
64 1awc_B Protein (GA binding pro 99.9 1.2E-26 4.1E-31 179.7 14.8 141 11-167 3-143 (153)
65 3v30_A DNA-binding protein rfx 99.9 1.8E-26 6E-31 182.4 15.4 128 10-152 36-163 (172)
66 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.5E-26 8.5E-31 181.0 16.0 154 10-178 14-168 (169)
67 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.1E-28 1.8E-32 201.6 6.6 114 10-139 5-118 (239)
68 4hbd_A KN motif and ankyrin re 99.9 1.7E-26 5.8E-31 196.5 15.8 114 10-138 111-230 (276)
69 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.5E-26 1.2E-30 180.1 15.7 129 1-144 34-166 (169)
70 3c5r_A BARD-1, BRCA1-associate 99.9 5.4E-27 1.9E-31 178.2 10.5 126 4-144 1-129 (137)
71 1ihb_A P18-INK4C(INK6), cyclin 99.9 3E-26 1E-30 179.2 14.5 129 1-145 25-158 (162)
72 2jab_A H10-2-G3; HER2, darpin, 99.9 4.5E-26 1.5E-30 172.9 14.2 120 10-144 14-133 (136)
73 3v31_A Ankyrin repeat family A 99.9 6.4E-26 2.2E-30 178.2 15.2 131 2-147 24-159 (167)
74 2rfm_A Putative ankyrin repeat 99.9 5.8E-26 2E-30 182.7 14.8 129 2-145 56-188 (192)
75 1bi7_B P16INK4A, MTS1, multipl 99.9 1.9E-26 6.5E-31 179.2 11.0 138 9-162 11-149 (156)
76 3twr_A Tankyrase-2; ankyrin re 99.9 2.9E-26 9.9E-31 179.8 12.1 156 7-177 4-161 (165)
77 3f6q_A Integrin-linked protein 99.9 8.4E-26 2.9E-30 179.7 13.9 136 4-154 29-168 (179)
78 3twr_A Tankyrase-2; ankyrin re 99.9 1.8E-25 6.3E-30 175.3 14.9 126 4-144 32-161 (165)
79 1awc_B Protein (GA binding pro 99.9 3.9E-25 1.3E-29 171.2 16.2 127 2-143 23-152 (153)
80 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.5E-25 1.5E-29 164.8 15.5 120 10-144 2-121 (126)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 7.4E-26 2.5E-30 188.5 12.4 138 1-152 25-167 (239)
82 3t8k_A Uncharacterized protein 99.9 4.6E-26 1.6E-30 181.8 10.2 132 10-149 38-179 (186)
83 2aja_A Ankyrin repeat family p 99.9 2E-28 6.9E-33 216.0 -4.0 122 10-147 92-222 (376)
84 3aaa_C Myotrophin, protein V-1 99.9 5.6E-25 1.9E-29 163.8 14.1 108 10-132 7-114 (123)
85 3t8k_A Uncharacterized protein 99.9 4.8E-25 1.6E-29 175.9 13.3 115 10-136 6-127 (186)
86 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.3E-24 4.6E-29 168.6 15.2 123 4-143 26-152 (156)
87 3ui2_A Signal recognition part 99.9 1.2E-24 4E-29 181.7 13.6 108 10-133 45-153 (244)
88 2vge_A RELA-associated inhibit 99.9 1.6E-25 5.5E-30 185.0 4.2 195 26-330 1-210 (229)
89 3ehr_A Osteoclast-stimulating 99.9 2.3E-24 7.7E-29 177.5 10.8 124 10-148 73-197 (222)
90 3deo_A Signal recognition part 99.9 1.4E-23 4.7E-28 167.4 14.0 109 10-134 44-153 (183)
91 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2E-23 6.7E-28 147.2 12.4 92 10-115 2-93 (93)
92 2aja_A Ankyrin repeat family p 99.9 1.3E-25 4.5E-30 198.0 -1.8 239 10-334 65-345 (376)
93 1bi7_B P16INK4A, MTS1, multipl 99.9 1.7E-23 6E-28 162.4 7.6 115 1-131 32-151 (156)
94 3deo_A Signal recognition part 99.9 1.2E-23 4.1E-28 167.8 4.2 138 42-272 42-179 (183)
95 2b0o_E UPLC1; arfgap, structur 99.9 3.5E-22 1.2E-26 171.6 13.5 123 10-147 151-282 (301)
96 2l6b_A NR1C; ankyrin, consensu 99.9 1.2E-22 4.1E-27 149.2 7.8 104 10-128 9-112 (115)
97 3jue_A Arfgap with coiled-coil 99.9 1.3E-21 4.4E-26 171.9 14.9 123 10-146 199-323 (368)
98 1d9s_A Cyclin-dependent kinase 99.9 1.4E-22 4.9E-27 153.4 7.2 100 1-115 32-136 (136)
99 1dcq_A PYK2-associated protein 99.9 2.4E-21 8.2E-26 164.6 15.5 124 10-148 130-262 (278)
100 2b0o_E UPLC1; arfgap, structur 99.9 1.4E-22 4.9E-27 174.0 7.5 114 2-136 172-298 (301)
101 2jab_A H10-2-G3; HER2, darpin, 99.9 1.4E-21 4.8E-26 147.9 11.8 98 2-113 35-136 (136)
102 3lvq_E ARF-GAP with SH3 domain 99.9 1.8E-21 6.1E-26 179.0 14.4 128 10-152 132-268 (497)
103 1n0r_A 4ANK, 4 ankyrin repeats 99.8 6.2E-21 2.1E-25 142.1 11.4 100 2-115 23-126 (126)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.3E-20 7.9E-25 131.4 11.3 88 43-144 1-88 (93)
105 3c5r_A BARD-1, BRCA1-associate 99.8 1.5E-20 5.1E-25 142.4 10.1 117 33-165 1-117 (137)
106 3ui2_A Signal recognition part 99.8 4.8E-20 1.6E-24 153.7 12.7 111 4-145 67-181 (244)
107 3lvq_E ARF-GAP with SH3 domain 99.8 3E-20 1E-24 170.9 11.0 110 2-132 153-275 (497)
108 1dcq_A PYK2-associated protein 99.8 4.7E-20 1.6E-24 156.6 10.9 92 10-115 169-263 (278)
109 3aaa_C Myotrophin, protein V-1 99.8 1.3E-19 4.3E-24 134.6 10.8 109 42-164 5-113 (123)
110 3jue_A Arfgap with coiled-coil 99.8 1.3E-19 4.3E-24 159.3 11.0 118 1-133 220-346 (368)
111 2zgd_A 3 repeat synthetic anky 99.8 1.9E-19 6.6E-24 130.8 10.2 86 10-109 24-109 (110)
112 3ehr_A Osteoclast-stimulating 99.8 5E-20 1.7E-24 151.4 6.4 107 2-122 94-205 (222)
113 2l6b_A NR1C; ankyrin, consensu 99.8 5.1E-19 1.7E-23 129.6 9.1 107 39-160 5-111 (115)
114 2zgd_A 3 repeat synthetic anky 99.8 3.6E-18 1.2E-22 124.0 9.7 88 42-143 22-109 (110)
115 3zrh_A Ubiquitin thioesterase 45.5 64 0.0022 28.0 7.0 51 17-67 29-92 (454)
116 1gp8_A Protein (scaffolding pr 36.5 25 0.00086 18.8 2.0 17 14-30 17-33 (40)
117 4g26_A Pentatricopeptide repea 30.0 1.3E+02 0.0043 27.0 7.0 127 3-147 55-202 (501)
118 4g26_A Pentatricopeptide repea 21.5 1.7E+02 0.0058 26.2 6.2 95 3-111 99-199 (501)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.3e-44 Score=327.22 Aligned_cols=322 Identities=24% Similarity=0.202 Sum_probs=225.0
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCH---------
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--------- 68 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~--------- 68 (338)
+.|+++|. |.||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|.
T Consensus 2 ~~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g 80 (437)
T 1n11_A 2 SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD 80 (437)
T ss_dssp -------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSS-SCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS
T ss_pred CCCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC
Confidence 35788887 8999999999999999999999999988887 888999999999999999999988765
Q ss_pred ------------HHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCC
Q psy5573 69 ------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAR 136 (338)
Q Consensus 69 ------------~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~ 136 (338)
.+++++|+++|++++.++..|.||||+|+.. |+.+++++|++++++.+..+.. |.||||+|+..+.
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~-g~t~L~~A~~~g~ 158 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE-GHVETVLALLEKEASQACMTKK-GFTPLHVAAKYGK 158 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTC
T ss_pred CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcCCCCC-CCCHHHHHHHcCC
Confidence 6888888888888888888888888888887 8888888888888888877777 8888888887777
Q ss_pred hhHHHHHhhhhhhhhhhcCCCccHHHHHHHH-HHHHHHHHHhcCCC----CCCCcchhHHH-------------------
Q psy5573 137 EVNTVLLYFINEIFKLMANNDTTILDRLDEM-KSLILEVTKEFGPG----DYNNFSLLKVA------------------- 192 (338)
Q Consensus 137 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~------------------- 192 (338)
..+..++...+...+..+..+.++++.+... ...+.+++...+.. +..+.++++.+
T Consensus 159 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~ 238 (437)
T 1n11_A 159 VRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238 (437)
T ss_dssp HHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 6555555555556666667777777765543 34455666555432 33445555544
Q ss_pred --hhcCCCCHHHHHHHhhcccchhhhh-------ccccccchhHHHHhhcCCccchhhhhh----hccccccCCCHHHHH
Q psy5573 193 --KNDAGETILDIFFELIGKNDTTILD-------RLDEMKSIKLELTKAFGPGDYNNFSLL----KVTKNDAGETILDIA 259 (338)
Q Consensus 193 --~~~~~~t~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~TpLh~A 259 (338)
.+..|.||||+|+..+.......+- .........+..+...++.++++.++. .+.+|..|+||||+|
T Consensus 239 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A 318 (437)
T 1n11_A 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318 (437)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHH
Confidence 2345667777776543322222111 111223345566666666666666654 345677788888888
Q ss_pred HHhCChhHH-HHHHhhcccC----CCCCCC------chHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchhhh
Q psy5573 260 KKRGFPLLE-ELEKKLADAN----NDTTIL------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILGPT 327 (338)
Q Consensus 260 ~~~g~~~i~-~ll~~~~d~~----~~~~~l------~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~~~ 327 (338)
+..|+.+++ +|++++++++ .|.|+| |+.++|++|+++|+ +++.+|.+|+||||+|++.+...++..+
T Consensus 319 ~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 319 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA-SPNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp HHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-CSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC-CCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 888887777 7777777765 466666 77888888888888 7888888888888888887776665443
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.8e-44 Score=323.68 Aligned_cols=294 Identities=26% Similarity=0.250 Sum_probs=226.7
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCH---------
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--------- 68 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~--------- 68 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+++++|+++|.
T Consensus 35 ~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g 113 (437)
T 1n11_A 35 QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA-KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 113 (437)
T ss_dssp HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC-TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTC
T ss_pred HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC-CCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCC
Confidence 56888887 8999999999999999999999999999888 889999999999999999999998765
Q ss_pred ------------HHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCC
Q psy5573 69 ------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAR 136 (338)
Q Consensus 69 ------------~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~ 136 (338)
.+++++|++.+++++..+..|.||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..+.
T Consensus 114 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~ 191 (437)
T 1n11_A 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY-GKVRVAELLLERDAHPNAAGKN-GLTPLHVAVHHNN 191 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCSS-CCCHHHHHHHTTC
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHcCC
Confidence 6788888888888888888888888888887 8888888888888888888877 8888888887777
Q ss_pred hhHHHHHhhhhhhhhhhcCCCccHHHHHHHH-HHHHHHHHHhcC----CCCCCCcchhHHH-------------------
Q psy5573 137 EVNTVLLYFINEIFKLMANNDTTILDRLDEM-KSLILEVTKEFG----PGDYNNFSLLKVA------------------- 192 (338)
Q Consensus 137 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~------------------- 192 (338)
..+..++...+......+..+.++++.+... ...+.+.+...+ ..+..+.++++.+
T Consensus 192 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~ 271 (437)
T 1n11_A 192 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271 (437)
T ss_dssp HHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC
Confidence 5555555555555555566677777665443 344555555543 2344566666655
Q ss_pred --hhcCCCCHHHHHHHhhcccchhhh-------hccccccchhHHHHhhcCCccchhhhhh----hccccccCCCHHHHH
Q psy5573 193 --KNDAGETILDIFFELIGKNDTTIL-------DRLDEMKSIKLELTKAFGPGDYNNFSLL----KVTKNDAGETILDIA 259 (338)
Q Consensus 193 --~~~~~~t~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~TpLh~A 259 (338)
.+..|.||||+|++.+.......+ ..........++.+...+..+++++++. .+.+|..|+||||+|
T Consensus 272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A 351 (437)
T 1n11_A 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA 351 (437)
T ss_dssp TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 355688999999876543332222 1123335567888888888888888875 467899999999999
Q ss_pred HHhCChhHH-HHHHhhcccC----CCCCCC------chHHHHHHHHHcCC
Q psy5573 260 KKRGFPLLE-ELEKKLADAN----NDTTIL------DRLDEMKSLILEGT 298 (338)
Q Consensus 260 ~~~g~~~i~-~ll~~~~d~~----~~~~~l------~~~~~v~~Ll~~g~ 298 (338)
+..|+.+++ .|++++++.+ .|.|++ |+.+++++|.....
T Consensus 352 ~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~~~~~ 401 (437)
T 1n11_A 352 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTD 401 (437)
T ss_dssp HHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHHHCC
T ss_pred HHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhccc
Confidence 999999999 8999999976 678888 88999999986544
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.7e-39 Score=285.19 Aligned_cols=261 Identities=25% Similarity=0.268 Sum_probs=195.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCH---------------------
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--------------------- 68 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~--------------------- 68 (338)
|.||||.|++.|++++|++||++|+++|.+++..|+||||+|+..|+.++|++|+++|+
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 104 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS 104 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence 78999999999999999999999999999986679999999999999999999999876
Q ss_pred HHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCC---------CCCCCHHHHHhhcCC-hh
Q psy5573 69 KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG---------KTGKTPLLHAGKGAR-EV 138 (338)
Q Consensus 69 ~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~---------~~g~tpL~~A~~~~~-~~ 138 (338)
......++..+++++.+|..|.||||+|+.. ++.+++++|+++|++++.... ..|.||||+|+..++ +.
T Consensus 105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~ 183 (337)
T 4g8k_A 105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV 183 (337)
T ss_dssp HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred chhhHHhhhccchhhhhccCCCCHHHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence 5777888889999999999999999999997 999999999999998875432 138899999997776 45
Q ss_pred HHHHHhhhhhhhhhhcCCCccHHHHHHHH-----HHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccch
Q psy5573 139 NTVLLYFINEIFKLMANNDTTILDRLDEM-----KSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDT 213 (338)
Q Consensus 139 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~ 213 (338)
++.|+...+.+++..+..+.++++.+... ...+.+++...+.. . ...+..|.||||++++.+..
T Consensus 184 v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~-------n~~d~~g~t~L~~a~~~~~~--- 252 (337)
T 4g8k_A 184 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-V-------NVRGERGKTPLILAVEKKHL--- 252 (337)
T ss_dssp HHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-T-------TCCCGGGCCHHHHHHHTTCH---
T ss_pred HHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-C-------CCcCCCCCCHHHHHHHhhhh---
Confidence 66666666777777777777777654322 13355666665543 1 23567888999998765222
Q ss_pred hhhhccccccchhHHHHh-hcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhcccCCCCCCC------c
Q psy5573 214 TILDRLDEMKSIKLELTK-AFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLADANNDTTIL------D 285 (338)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~~~~~~l------~ 285 (338)
+.+..++.. +.. .+.+|.+|+||||+|++.|+.+++ .|+++|+|++..+ +| +
T Consensus 253 ---------~~v~~Ll~~~~~~----------vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~-~L~~A~~~~ 312 (337)
T 4g8k_A 253 ---------GLVQRLLEQEHIE----------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD-LVMTARRNY 312 (337)
T ss_dssp ---------HHHHHHHTSTTCC----------TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC-HHHHHHHTT
T ss_pred ---------HHHHHHHHhcCCc----------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC-HHHHHHHcC
Confidence 222222221 111 236788999999999999998886 6666666666543 33 6
Q ss_pred hHHHHHHHHHcCCCCCCC
Q psy5573 286 RLDEMKSLILEGTKEFGP 303 (338)
Q Consensus 286 ~~~~v~~Ll~~g~~~~~~ 303 (338)
+.++|++||++|| +++.
T Consensus 313 ~~~iv~~Ll~~GA-~~d~ 329 (337)
T 4g8k_A 313 DHSLVKVLLSHGA-KEDF 329 (337)
T ss_dssp CHHHHHHHHHTTC-CC--
T ss_pred CHHHHHHHHHCcC-CCCC
Confidence 6777777777777 5543
No 4
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=6.3e-39 Score=270.19 Aligned_cols=228 Identities=22% Similarity=0.245 Sum_probs=157.4
Q ss_pred CCCC----CCcHHHHHHHcC-------------CHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCH
Q psy5573 6 TINV----ELTPLCAAVWDN-------------NIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68 (338)
Q Consensus 6 ~~n~----G~t~Lh~A~~~g-------------~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 68 (338)
|+|. |+||||+|+..| +.+++++|+++|++++...+..|+||||+|+..|+.
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~----------- 70 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRS----------- 70 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCH-----------
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCH-----------
Confidence 5666 999999999987 899999999999999876558999999999999998
Q ss_pred HHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCC-CCCccCCCCCCCHHHHHhhcCCh-hHHHHHhhh
Q psy5573 69 KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA-YYNVVDGKTGKTPLLHAGKGARE-VNTVLLYFI 146 (338)
Q Consensus 69 ~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~-~~~~~~~~~g~tpL~~A~~~~~~-~~~~ll~~~ 146 (338)
+++++|++.|++++.++..|+||||+|+.. ++.+++++|+++++ +++..+.. |.||||+|+..+.. .++.|+..
T Consensus 71 -~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~- 146 (253)
T 1yyh_A 71 -DAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDARMHD-GTTPLILAARLAVEGMLEDLINS- 146 (253)
T ss_dssp -HHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCCCTT-CCCHHHHHHHHTCSSHHHHHHHT-
T ss_pred -HHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccCCC-CCcHHHHHHHcChHHHHHHHHHc-
Confidence 556666677889999999999999999998 99999999999987 88888887 99999999976664 44444432
Q ss_pred hhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchh
Q psy5573 147 NEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIK 226 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
+... ...+..|.||||+|+.. ...+.++
T Consensus 147 g~~~----------------------------------------~~~d~~g~t~L~~A~~~------------~~~~~v~ 174 (253)
T 1yyh_A 147 HADV----------------------------------------NAVDDLGKSALHWAAAV------------NNVDAAV 174 (253)
T ss_dssp TCCT----------------------------------------TCBCTTSCBHHHHHHHH------------TCHHHHH
T ss_pred CCCC----------------------------------------CCcCCCCCCHHHHHHHc------------CCHHHHH
Confidence 2111 12456788999999875 2334455
Q ss_pred HHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCC
Q psy5573 227 LELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDY 306 (338)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~ 306 (338)
.++..+.... .+|..|.||||+|+..|+.++ +++|+++|+ +++.+|.
T Consensus 175 ~Ll~~ga~~~----------~~~~~g~tpL~~A~~~~~~~~----------------------v~~Ll~~ga-~~~~~d~ 221 (253)
T 1yyh_A 175 VLLKNGANKD----------MQNNREETPLFLAAREGSYET----------------------AKVLLDHFA-NRDITDH 221 (253)
T ss_dssp HHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHH----------------------HHHHHHTTC-CTTCCCT
T ss_pred HHHHcCCCCC----------CcCCCCCCHHHHHHHCCCHHH----------------------HHHHHHcCC-Ccccccc
Confidence 6666555543 678999999999999999988 999999999 9999999
Q ss_pred CCCcHHHHHHHhcCccchhhhhhhhhh
Q psy5573 307 NNFSLLKVAKNDAGETILGPTMIQLSW 333 (338)
Q Consensus 307 ~g~T~Lh~A~~~~~~~i~~~~~~~~~~ 333 (338)
.|+||||+|++.++.+|+..+..+..|
T Consensus 222 ~g~tpl~~A~~~g~~~i~~~l~~~~~~ 248 (253)
T 1yyh_A 222 MDRLPRDIAQERMHHDIVRLLDLEHHH 248 (253)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence 999999999999999999887766554
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6.5e-38 Score=268.09 Aligned_cols=257 Identities=23% Similarity=0.225 Sum_probs=180.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||.|++.|+.+++++|+++|++++..++..|.||||+|+..|+. +++++|+++|++++.++..|
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~~~~g 72 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRE------------DIVELLLRHGADPVLRKKNG 72 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTTC
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCH------------HHHHHHHHcCCCCcccCCCC
Confidence 789999999999999999999999999988558899999999999998 55566667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhh----------cCCCcc
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLM----------ANNDTT 159 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~----------~~~~~~ 159 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++...+...... +..+.+
T Consensus 73 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t 150 (285)
T 1wdy_A 73 ATPFLLAAIA-GSVKLLKLFLSKGADVNECDFY-GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150 (285)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCTTCBCTT-CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCC
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCCCccCcc-cCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCc
Confidence 9999999998 9999999999999999999988 999999999877754444444444333332 333444
Q ss_pred HHHHHHHH-HHHHHHHHHhc-CCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCcc
Q psy5573 160 ILDRLDEM-KSLILEVTKEF-GPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGD 237 (338)
Q Consensus 160 ~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (338)
+++.+... ...+.+.+... +.. . ...+..|.||||+++........ ...++.++..+....
T Consensus 151 ~L~~A~~~~~~~~v~~Ll~~~~~~-~-------~~~~~~g~t~l~~a~~~~~~~~~--------~~i~~~Ll~~g~~~~- 213 (285)
T 1wdy_A 151 ALMDAAEKGHVEVLKILLDEMGAD-V-------NACDNMGRNALIHALLSSDDSDV--------EAITHLLLDHGADVN- 213 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTSCCC-T-------TCCCTTSCCHHHHHHHCSCTTTH--------HHHHHHHHHTTCCSS-
T ss_pred HHHHHHHcCCHHHHHHHHHhcCCC-C-------CccCCCCCCHHHHHHHccccchH--------HHHHHHHHHcCCCCC-
Confidence 44433322 23333333332 211 1 12344455555555443211100 111222233222221
Q ss_pred chhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHH-cCCCCCCCCCCCCCcHHHHHH
Q psy5573 238 YNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLIL-EGTKEFGPGDYNNFSLLKVAK 316 (338)
Q Consensus 238 ~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~-~g~~~~~~~d~~g~T~Lh~A~ 316 (338)
.+|..|+||||+|++.|+.++ +++|++ .|+ +++.+|..|+||||+|+
T Consensus 214 ---------~~~~~g~t~L~~A~~~~~~~~----------------------v~~Ll~~~g~-~~~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 214 ---------VRGERGKTPLILAVEKKHLGL----------------------VQRLLEQEHI-EINDTDSDGKTALLLAV 261 (285)
T ss_dssp ---------CCCTTSCCHHHHHHHTTCHHH----------------------HHHHHHSSSC-CTTCCCTTSCCHHHHHH
T ss_pred ---------CcCCCCCcHHHHHHHcCCHHH----------------------HHHHHhccCC-CccccCCCCCcHHHHHH
Confidence 344555555555555555554 999998 777 99999999999999999
Q ss_pred HhcCccchhhhhh
Q psy5573 317 NDAGETILGPTMI 329 (338)
Q Consensus 317 ~~~~~~i~~~~~~ 329 (338)
+.++.+++..++-
T Consensus 262 ~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 262 ELKLKKIAELLCK 274 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCcHHHHHHHHH
Confidence 9999988876653
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.2e-37 Score=274.50 Aligned_cols=266 Identities=24% Similarity=0.222 Sum_probs=202.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc-CCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
|.|+||.|++.|+.+.++.|+.. +.+++.++ ..|.||||+|+..|+. +++++|++.|++++.+|..
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d-~~g~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~~~~ 90 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTPLHLAAGYNRV------------RIVQLLLQHGADVHAKDKG 90 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSS-TTCCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTT
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCccCCC
Confidence 77899999999999998888874 78888887 8899999999999997 5555566677899999999
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHH
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMK 168 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
|.||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..+...+..++...+......+..+.++++.+....
T Consensus 91 g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~ 168 (351)
T 3utm_A 91 GLVPLHNACSY-GHYEVTELLLKHGACVNAMDLW-QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168 (351)
T ss_dssp CCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHH
T ss_pred CCcHHHHHHHC-CCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhh
Confidence 99999999997 9999999999999999988877 999999999877765555555556666666667777665432111
Q ss_pred ----------------------HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchh
Q psy5573 169 ----------------------SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIK 226 (338)
Q Consensus 169 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
............. ....+..+.||||+++........ ..++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~t~L~~A~~~~~~~~~---------~~~~ 231 (351)
T 3utm_A 169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEII--------NFKQPQSHETALHCAVASLHPKRK---------QVAE 231 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT--------TCCCTTTCCCHHHHHHHCCSTTHH---------HHHH
T ss_pred hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc--------cccCCCCCCCHHHHHHHHhCccHH---------HHHH
Confidence 0001111111111 112456789999999875332222 2344
Q ss_pred HHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhcccC----CCCCCC------chHHHHHHHHH
Q psy5573 227 LELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLADAN----NDTTIL------DRLDEMKSLIL 295 (338)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~----~~~~~l------~~~~~v~~Ll~ 295 (338)
.++..+.... .+|..|+||||+|+..|+.+++ .|++++++.+ .|.|+| |+.++|++|++
T Consensus 232 ~Ll~~g~~~~----------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~ 301 (351)
T 3utm_A 232 LLLRKGANVN----------EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301 (351)
T ss_dssp HHHHTTCCTT----------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHcCCCcC----------CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 4454444433 6789999999999999999998 8889999876 678888 99999999999
Q ss_pred cCCCCCCCCCCCCCcHHHHHHHh
Q psy5573 296 EGTKEFGPGDYNNFSLLKVAKND 318 (338)
Q Consensus 296 ~g~~~~~~~d~~g~T~Lh~A~~~ 318 (338)
+|+ +++.+|..|+||+|+|...
T Consensus 302 ~ga-d~~~~~~~g~tal~~a~~~ 323 (351)
T 3utm_A 302 YGS-DPSIISLQGFTAAQMGNEA 323 (351)
T ss_dssp TTC-CTTCCCTTSCCHHHHSCHH
T ss_pred cCC-CCCCcCCCCCChhhhhhHH
Confidence 999 9999999999999999443
No 7
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-38 Score=281.86 Aligned_cols=266 Identities=17% Similarity=0.118 Sum_probs=207.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..+. +++++|+. .+++..++..|+||||+|+..|+.+++++|+. ..++.|++.|+++|.+|.+|
T Consensus 94 g~t~L~~Aa~~~~-~~~~~L~~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~----~~~~~ll~~ga~vn~~d~~g 166 (373)
T 2fo1_E 94 SPIKLHTEAAGSY-AITEPITR--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV----HEAKECIAAGADVNAMDCDE 166 (373)
T ss_dssp CCCHHHHHHHSSS-CCCSCCST--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHH----HHHHHHHHTCCCTTCCCTTS
T ss_pred CccHHHHHhcCCc-hHHHHhcc--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHH----HHHHHHHhcCCCCcCCCCCC
Confidence 9999999999654 78888765 46777776789999999999999999999986 46678899999999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh-hHHHHHhhhh--hhhhhhcCCCccHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE-VNTVLLYFIN--EIFKLMANNDTTILDRLDE 166 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~-~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~ 166 (338)
.||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..+.. .+..|+.... ...+..+..+.++++.+..
T Consensus 167 ~TpL~~A~~~-g~~~iv~~Ll~~ga~~~~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~ 244 (373)
T 2fo1_E 167 NTPLMLAVLA-RRRRLVAYLMKAGADPTIYNKS-ERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244 (373)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCSCCCCTT-CCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred CCHHHHHHHc-ChHHHHHHHHHCCCCCcccCCC-CCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHH
Confidence 9999999998 9999999999999999999988 99999999987775 4555554432 4566677888888887665
Q ss_pred H----HHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhh-cCCccchhh
Q psy5573 167 M----KSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKA-FGPGDYNNF 241 (338)
Q Consensus 167 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 241 (338)
. ...+.+.+...+..-...........+..|.||||+|+.. +..+.++.++... ...
T Consensus 245 ~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~------------g~~~~v~~Ll~~~~~~~------ 306 (373)
T 2fo1_E 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV------------SNMPIVKYLVGEKGSNK------ 306 (373)
T ss_dssp SCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS------------CCHHHHHHHHHHSCCCT------
T ss_pred hCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHh------------CCHHHHHHHHHhcCCCc------
Confidence 3 4556666666654321111111122456788888888654 2233444444433 222
Q ss_pred hhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCc
Q psy5573 242 SLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGE 321 (338)
Q Consensus 242 ~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~ 321 (338)
+.+|..|+||||+|+..|+.++ |++|+++|+ +++.+|..|+||||+|+..++.
T Consensus 307 ----n~~d~~g~TpL~~A~~~g~~~i----------------------v~~Ll~~ga-d~~~~d~~g~t~l~~A~~~g~~ 359 (373)
T 2fo1_E 307 ----DKQDEDGKTPIMLAAQEGRIEV----------------------VMYLIQQGA-SVEAVDATDHTARQLAQANNHH 359 (373)
T ss_dssp ----TCCCTTCCCHHHHHHHHTCHHH----------------------HHHHHHTTC-CSSCCCSSSCCHHHHHHHTTCH
T ss_pred ----cCcCCCCCCHHHHHHHcCCHHH----------------------HHHHHHcCC-CccCCCCCCCCHHHHHHHcCCH
Confidence 2567888888888888888877 999999999 9999999999999999999999
Q ss_pred cchhhhhh
Q psy5573 322 TILGPTMI 329 (338)
Q Consensus 322 ~i~~~~~~ 329 (338)
+|+..++-
T Consensus 360 ~iv~~Ll~ 367 (373)
T 2fo1_E 360 NIVDIFDR 367 (373)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 98876653
No 8
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4.3e-37 Score=256.29 Aligned_cols=213 Identities=22% Similarity=0.201 Sum_probs=177.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+. +++++|++.|++++.++..|
T Consensus 11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~g 77 (237)
T 3b7b_A 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCS-EDQRTPLMEAAENNHL------------EAVKYLIKAGALVDPKDAEG 77 (237)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCH------------HHHHHHHTTTCCCCCCCTTS
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcCccC-CCCCCHHHHHHHhCCH------------HHHHHHHhCCCCCCCCCCCC
Confidence 9999999999999999999999999999998 8999999999999998 55566667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHG-AYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMK 168 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
.||||+|+.. ++.+++++|++.| .+++..+.. |.||||+|+..+...+..++...+...
T Consensus 78 ~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------------ 137 (237)
T 3b7b_A 78 STCLHLAAKK-GHYEVVQYLLSNGQMDVNCQDDG-GWTPMIWATEYKHVDLVKLLLSKGSDI------------------ 137 (237)
T ss_dssp CCHHHHHHHT-TCHHHHHHHHTTTCCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCT------------------
T ss_pred CcHHHHHHHc-CCHHHHHHHHhCCCCCcccCCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCC------------------
Confidence 9999999998 9999999999998 788888887 999999999877754333333222111
Q ss_pred HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccc
Q psy5573 169 SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK 248 (338)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (338)
...+..|.||||+++..+ ..+.++.++..+.... .+
T Consensus 138 ----------------------~~~~~~g~t~L~~A~~~~------------~~~~~~~Ll~~g~~~~----------~~ 173 (237)
T 3b7b_A 138 ----------------------NIRDNEENICLHWAAFSG------------CVDIAEILLAAKCDLH----------AV 173 (237)
T ss_dssp ----------------------TCCCTTSCCHHHHHHHHC------------CHHHHHHHHTTTCCTT----------CC
T ss_pred ----------------------CccCCCCCCHHHHHHHCC------------CHHHHHHHHHcCCCCC----------Cc
Confidence 124567889999998752 2334455555444443 67
Q ss_pred cccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCcc
Q psy5573 249 NDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGET 322 (338)
Q Consensus 249 ~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~ 322 (338)
|..|.||||+|++.|+.++ +++|+++|+ +++.+|.+|+||||+|+..++.+
T Consensus 174 ~~~g~t~L~~A~~~~~~~~----------------------v~~Ll~~ga-d~~~~d~~g~t~l~~A~~~~~~~ 224 (237)
T 3b7b_A 174 NIHGDSPLHIAARENRYDC----------------------VVLFLSRDS-DVTLKNKEGETPLQCASLNSQVW 224 (237)
T ss_dssp CTTCCCHHHHHHHTTCHHH----------------------HHHHHTTTC-CTTCCCTTSCCHHHHSCTTCHHH
T ss_pred CCCCCCHHHHHHHhCCHhH----------------------HHHHHHcCC-CCCccCCCCCCHHHHHHHHHHHH
Confidence 8899999999999999988 999999999 99999999999999999988753
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=260.71 Aligned_cols=236 Identities=18% Similarity=0.089 Sum_probs=182.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|+||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~~~~g 69 (261)
T 2xai_A 3 DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHL------------SCVKILLKHGAQVNGVTADW 69 (261)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCSSCCC-TTCCCHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCCH------------HHHHHHHHCCCCCCCCCCCC
Confidence 8999999999999999999999999999998 8999999999999998 55566667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKS 169 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
.||||+|+.. ++.+++++|+++|++++..+ . |.||||+|+..+...+..++...+.+.
T Consensus 70 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~-~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------- 127 (261)
T 2xai_A 70 HTPLFNACVS-GSWDCVNLLLQHGASVQPES-D-LASPIHEAARRGHVECVNSLIAYGGNI------------------- 127 (261)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCSSCSC-T-TCCHHHHHHHTTCHHHHHHHHHTTCCT-------------------
T ss_pred CCHHHHHHHc-CCHHHHHHHHHCCCCCCCCC-C-CCCHHHHHHHcCcHHHHHHHHHcCCCC-------------------
Confidence 9999999998 99999999999999988643 4 999999999877754443333222211
Q ss_pred HHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhcccc
Q psy5573 170 LILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKN 249 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (338)
...+..|.||||+|+.. ...+.++.++..+... ..+
T Consensus 128 ---------------------~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~g~~~-----------~~~ 163 (261)
T 2xai_A 128 ---------------------DHKISHLGTPLYLACEN------------QQRACVKKLLESGADV-----------NQG 163 (261)
T ss_dssp ---------------------TCCBTTTBCHHHHHHHT------------TCHHHHHHHHHHTCCT-----------TCC
T ss_pred ---------------------CcCCCCCCCHHHHHHHh------------CCHHHHHHHHHcCCCC-----------CCC
Confidence 12456788899998765 2334455556555544 247
Q ss_pred ccCCCHHHHHHHhCChhHH-HHHHhhcccC----CCCCCC----chHHHHHHHHHcCCC-------CCCCCCCCCCcHHH
Q psy5573 250 DAGETILDIAKKRGFPLLE-ELEKKLADAN----NDTTIL----DRLDEMKSLILEGTK-------EFGPGDYNNFSLLK 313 (338)
Q Consensus 250 ~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~----~~~~~l----~~~~~v~~Ll~~g~~-------~~~~~d~~g~T~Lh 313 (338)
..|.||||+|+..|+.+++ .|++.++|.+ .|.|++ .+.+++++|+++++. +++.+|..|+||+|
T Consensus 164 ~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~ 243 (261)
T 2xai_A 164 KGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHH 243 (261)
T ss_dssp BTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTCTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGG
T ss_pred CCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccccHHHHHHhccCCccHHHHHHHHHHHHhchhccc
Confidence 8899999999999999987 7777777754 566776 566678888877651 24467788888888
Q ss_pred HHHHhcCccch
Q psy5573 314 VAKNDAGETIL 324 (338)
Q Consensus 314 ~A~~~~~~~i~ 324 (338)
+|++..-+..+
T Consensus 244 ~~~~~~~p~~l 254 (261)
T 2xai_A 244 KITKLVLPEDL 254 (261)
T ss_dssp GGGGSSSCHHH
T ss_pred cCcccCCcHHH
Confidence 88777655444
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9e-37 Score=260.84 Aligned_cols=235 Identities=20% Similarity=0.140 Sum_probs=132.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC---CCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHD---VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKS 86 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~ 86 (338)
|.||||+|+..|+.++|++|+++|++ ++.++ ..|+||||+|+..|+. +++++|+++|++++.++
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-~~g~t~L~~A~~~g~~------------~~v~~Ll~~ga~~~~~~ 75 (282)
T 1oy3_D 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN-DLGQTALHLAAILGEA------------STVEKLYAAGAGVLVAE 75 (282)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCCSSCCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCCCC
Confidence 99999999999999999999999988 77777 8999999999999998 56666667788999999
Q ss_pred CCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCC------------CCCCCHHHHHhhcCC-hhHHHHHhhhhhhhhhh
Q psy5573 87 ATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG------------KTGKTPLLHAGKGAR-EVNTVLLYFINEIFKLM 153 (338)
Q Consensus 87 ~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~------------~~g~tpL~~A~~~~~-~~~~~ll~~~~~~~~~~ 153 (338)
..|.||||+|+.. ++.+++++|+++|++...... ..+.++++.++..+. ......+.......+..
T Consensus 76 ~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (282)
T 1oy3_D 76 RGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154 (282)
T ss_dssp TTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCC
T ss_pred CCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc
Confidence 9999999999998 999999999998876432111 114455555543322 22222222222222222
Q ss_pred cCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhc
Q psy5573 154 ANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAF 233 (338)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (338)
+..|.||||+|+.. +....++.++..+.
T Consensus 155 ----------------------------------------~~~g~t~L~~A~~~------------g~~~~v~~Ll~~g~ 182 (282)
T 1oy3_D 155 ----------------------------------------NYDGHTPLHVAVIH------------KDAEMVRLLRDAGA 182 (282)
T ss_dssp ----------------------------------------CTTSCCHHHHHHHT------------TCHHHHHHHHHHTC
T ss_pred ----------------------------------------CCCCcCHHHHHHHc------------CCHHHHHHHHHcCC
Confidence 23344444444432 11222333333332
Q ss_pred CCccchhhhhhhcccc-ccCCCHHHHHHHhCChhHH-HHHHhhcccC----CCCCCC------chHHHHHHHHHcCCCCC
Q psy5573 234 GPGDYNNFSLLKVTKN-DAGETILDIAKKRGFPLLE-ELEKKLADAN----NDTTIL------DRLDEMKSLILEGTKEF 301 (338)
Q Consensus 234 ~~~~~~~~~~~~~~~~-~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~----~~~~~l------~~~~~v~~Ll~~g~~~~ 301 (338)
... .++ ..|+||||+|+..|+.+++ .|++++++.+ .|.|+| ++.+++++|+++|+ ++
T Consensus 183 ~~~----------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~ 251 (282)
T 1oy3_D 183 DLN----------KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA-PE 251 (282)
T ss_dssp CTT----------CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTC-CC
T ss_pred CCC----------CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCC-Cc
Confidence 221 222 1244555555555544444 4444444433 234444 44555999999999 99
Q ss_pred CCCCCCCCcHHHHHHHhcCc
Q psy5573 302 GPGDYNNFSLLKVAKNDAGE 321 (338)
Q Consensus 302 ~~~d~~g~T~Lh~A~~~~~~ 321 (338)
+.+|..|+|||++|....+.
T Consensus 252 ~~~~~~g~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 252 PEDGGDKLSPCSSSGSDSDS 271 (282)
T ss_dssp CCCC----------------
T ss_pred CcCCCcccccccccCCcccc
Confidence 99999999999999887653
No 11
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-37 Score=265.10 Aligned_cols=235 Identities=23% Similarity=0.203 Sum_probs=180.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||.||..|+.++|++|+++|++++..+ ..|.||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~------------~~v~~Ll~~ga~~~~~~~~g 106 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGADINYAN-VDGLTALHQACIDDNV------------DMVKFLVENGANINQPDNEG 106 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBC-TTCCBHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCH------------HHHHHHHHCCCCCCCCCCCC
Confidence 8899999999999999999999999999998 8999999999999998 55666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCC-hhHHHHHhhhhhhhhhhcCCCccHHHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAR-EVNTVLLYFINEIFKLMANNDTTILDRLDEMK 168 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~-~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
.||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..+. +.+..++...+.............+.
T Consensus 107 ~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~------ 178 (299)
T 1s70_B 107 WIPLHAAASC-GYLDIAEYLISQGAHVGAVNSE-GDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML------ 178 (299)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH------
T ss_pred CcHHHHHHHc-CCHHHHHHHHhCCCCCCCcCCC-CCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH------
Confidence 9999999998 9999999999999999999988 9999999996665 45555555544433322211111111
Q ss_pred HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccc
Q psy5573 169 SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK 248 (338)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (338)
......+........ ..+..|.||||+|+..+ ..+.++.++..+.... .+
T Consensus 179 ~~~~~~l~~~~~~~~--------~~~~~g~t~L~~A~~~g------------~~~~v~~Ll~~g~d~~----------~~ 228 (299)
T 1s70_B 179 RDARQWLNSGHINDV--------RHAKSGGTALHVAAAKG------------YTEVLKLLIQARYDVN----------IK 228 (299)
T ss_dssp HHHHHHHHHTCCCCC--------CCTTTCCCHHHHHHHHT------------CHHHHHHHHTTTCCTT----------CC
T ss_pred HHHHHHHhccCcchh--------hhcCCCCCHHHHHHHCC------------cHHHHHHHHHcCCCCC----------Cc
Confidence 111112222211111 24567889999998752 2344455555444433 67
Q ss_pred cccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHh
Q psy5573 249 NDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKND 318 (338)
Q Consensus 249 ~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~ 318 (338)
|..|.||||+|+..|+.++ +++|+++|+ +++.+|..|+||||+|++.
T Consensus 229 d~~g~tpL~~A~~~~~~~~----------------------v~~Ll~~ga-d~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 229 DYDGWTPLHAAAHWGKEEA----------------------CRILVENLC-DMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp CTTCCCHHHHHHHTTCHHH----------------------HHHHHHTTC-CTTCCCTTSCCTTTSCCSG
T ss_pred CCCCCcHHHHHHhcCCHHH----------------------HHHHHHcCC-CCCCcCCCCCCHHHHHHHH
Confidence 8889999999999988888 999999999 9999999999999999764
No 12
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=8e-37 Score=255.20 Aligned_cols=220 Identities=25% Similarity=0.249 Sum_probs=180.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHh----cCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCccc
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLR----TGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFK 85 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~----~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~ 85 (338)
|.||||+|+..|+.+++++|++ .|.+++..+ ..|.||||+|+..|+. +++++|++.|++++.+
T Consensus 9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~ 75 (241)
T 1k1a_A 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-NLRQTPLHLAVITTLP------------SVVRLLVTAGASPMAL 75 (241)
T ss_dssp TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCccc-ccCCCHHHHHHHcCCH------------HHHHHHHHcCCCcccc
Confidence 9999999999999999999997 789999998 8999999999999998 5566666778899999
Q ss_pred CCCCChHHHHHHHhCCCHHHHHHHHhcCC----CCCccCCCCCCCHHHHHhhcCCh-hHHHHHhhhhhhhhhhcCCCccH
Q psy5573 86 SATGFTALHMACRFHDDDSIVRKLLRHGA----YYNVVDGKTGKTPLLHAGKGARE-VNTVLLYFINEIFKLMANNDTTI 160 (338)
Q Consensus 86 ~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~----~~~~~~~~~g~tpL~~A~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~ 160 (338)
+..|.||||+|+.. ++.+++++|++.++ +++..+.. |.||||+|+..+.. .++.|+.. +...+
T Consensus 76 ~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~--------- 143 (241)
T 1k1a_A 76 DRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEARNYD-GLTALHVAVNTECQETVQLLLER-GADID--------- 143 (241)
T ss_dssp CTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHT-TCCTT---------
T ss_pred CCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccccccCcC-CCcHHHHHHHcCCHHHHHHHHHc-CCCcc---------
Confidence 99999999999998 99999999999987 78888877 99999999977764 44444432 21110
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhh-cCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccch
Q psy5573 161 LDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKN-DAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYN 239 (338)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (338)
..+ ..|.||||+|++. ...+.++.++..+....
T Consensus 144 -------------------------------~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~g~~~~--- 177 (241)
T 1k1a_A 144 -------------------------------AVDIKSGRSPLIHAVEN------------NSLSMVQLLLQHGANVN--- 177 (241)
T ss_dssp -------------------------------CCCTTTCCCHHHHHHHT------------TCHHHHHHHHHTTCCTT---
T ss_pred -------------------------------cccccCCCcHHHHHHHc------------CCHHHHHHHHHcCCCCC---
Confidence 122 5688999999865 23344555555554443
Q ss_pred hhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhc
Q psy5573 240 NFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDA 319 (338)
Q Consensus 240 ~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~ 319 (338)
.+|..|.||||+|+..|+.++ +++|+++|+ +++.+|..|+||||+|+..+
T Consensus 178 -------~~~~~g~t~L~~A~~~~~~~~----------------------v~~Ll~~ga-~~~~~~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 178 -------AQMYSGSSALHSASGRGLLPL----------------------VRTLVRSGA-DSSLKNCHNDTPLMVARSRR 227 (241)
T ss_dssp -------CBCTTSCBHHHHHHHHTCHHH----------------------HHHHHHTTC-CTTCCCTTSCCTTTTCSSHH
T ss_pred -------CcCCCCCCHHHHHHHcCCHHH----------------------HHHHHhcCC-CCCCcCCCCCCHHHHHHhcC
Confidence 678899999999999999988 999999999 99999999999999999999
Q ss_pred Cccchhhhhhh
Q psy5573 320 GETILGPTMIQ 330 (338)
Q Consensus 320 ~~~i~~~~~~~ 330 (338)
..+|+..+..+
T Consensus 228 ~~~i~~~l~~~ 238 (241)
T 1k1a_A 228 VIDILRGKATR 238 (241)
T ss_dssp HHHHHTC----
T ss_pred cHHHHhhhccC
Confidence 98888776543
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-36 Score=259.36 Aligned_cols=240 Identities=17% Similarity=0.064 Sum_probs=157.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcC-----------CCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTG-----------HDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDN 78 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g-----------~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~ 78 (338)
|.|+||+|++.|+.+.+..++..+ ..++..+ ..|+||||+|+..|+. +++++|++.
T Consensus 15 ~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~g~t~L~~Aa~~g~~------------~~v~~Ll~~ 81 (285)
T 3d9h_A 15 VPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDA-VSDWSPMHEAAIHGHQ------------LSLRNLISQ 81 (285)
T ss_dssp ---------------------------CCSEECCCCTTCSSS-CCSCCHHHHHHHTTCH------------HHHHHHHHT
T ss_pred HHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCC-ccCCCHHHHHHHcCCH------------HHHHHHHHC
Confidence 999999999999987777765432 2244455 8899999999999998 556666677
Q ss_pred CCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCc
Q psy5573 79 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDT 158 (338)
Q Consensus 79 g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~ 158 (338)
|++++.+|.+|+||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+...+
T Consensus 82 g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~------- 152 (285)
T 3d9h_A 82 GWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGVTAD-WHTPLFNACVSGSWDCVNLLLQHGASVQ------- 152 (285)
T ss_dssp TCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCCSS-------
T ss_pred CCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCHHHHHHHHHHCCCCCC-------
Confidence 889999999999999999998 9999999999999999999988 9999999997777544444333322211
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccc
Q psy5573 159 TILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDY 238 (338)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (338)
.+..|.||||+|+..+ ..+.++.++..+....
T Consensus 153 ----------------------------------~~~~g~t~L~~A~~~g------------~~~~v~~Ll~~g~~~~-- 184 (285)
T 3d9h_A 153 ----------------------------------PESDLASPIHEAARRG------------HVECVNSLIAYGGNID-- 184 (285)
T ss_dssp ----------------------------------CSCTTSCHHHHHHHHT------------CHHHHHHHHHTTCCTT--
T ss_pred ----------------------------------CCCCCCCHHHHHHHcC------------CHHHHHHHHHCCCCCC--
Confidence 1223566777666542 2233444444333332
Q ss_pred hhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhcccC---CCCCCC------chHHHHHHHHHcCCCCCCCCCCCC
Q psy5573 239 NNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLADAN---NDTTIL------DRLDEMKSLILEGTKEFGPGDYNN 308 (338)
Q Consensus 239 ~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~---~~~~~l------~~~~~v~~Ll~~g~~~~~~~d~~g 308 (338)
.+|..|.||||+|+..|+.+++ .|++.+++.+ .|.|+| ++.+++++|+++|+ +++.+|.+|
T Consensus 185 --------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g 255 (285)
T 3d9h_A 185 --------HKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGA-DTQAKNAEG 255 (285)
T ss_dssp --------CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTS
T ss_pred --------CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-CCCCcCCCC
Confidence 5566777777777777777766 6666666654 455555 67777999999999 999999999
Q ss_pred CcHHHHHHHhcCccchhhhhhh
Q psy5573 309 FSLLKVAKNDAGETILGPTMIQ 330 (338)
Q Consensus 309 ~T~Lh~A~~~~~~~i~~~~~~~ 330 (338)
+||||+|++ +..++..++-+
T Consensus 256 ~t~l~~A~~--~~~~~~~Ll~~ 275 (285)
T 3d9h_A 256 KRPVELVPP--ESPLAQLFLER 275 (285)
T ss_dssp CCGGGGSCT--TSHHHHHHHHH
T ss_pred CCHHHHhcC--ccHHHHHHHHh
Confidence 999999993 45565555443
No 14
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=7.1e-36 Score=247.94 Aligned_cols=218 Identities=25% Similarity=0.267 Sum_probs=177.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC-CCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHD-VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
+.||||.|+..|+.+.+++|++.+.. ++..+ ..|.||||+|+..|+. +++++|++.|++++.+|..
T Consensus 6 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~~~~ 72 (231)
T 3aji_A 6 SNIMICNLAYSGKLDELKERILADKSLATRTD-QDSRTALHWACSAGHT------------EIVEFLLQLGVPVNDKDDA 72 (231)
T ss_dssp SSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCCSCCCCTT
T ss_pred ccchHHHHHHhCCHHHHHHHHHhchhhhhcCC-CCCCCHHHHHHHcCcH------------HHHHHHHHhCCCCCCcCCC
Confidence 78999999999999999999998765 44455 8999999999999998 5555666778899999999
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHH
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMK 168 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++...+...
T Consensus 73 g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~------------------ 132 (231)
T 3aji_A 73 GWSPLHIAASA-GXDEIVKALLVKGAHVNAVNQN-GCTPLHYAASKNRHEIAVMLLEGGANP------------------ 132 (231)
T ss_dssp SCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCT------------------
T ss_pred CCCHHHHHHHc-CHHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCC------------------
Confidence 99999999998 9999999999999999999988 999999999877754433333222111
Q ss_pred HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccc
Q psy5573 169 SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK 248 (338)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (338)
...+..|.||||+++.. ...+.++.++..+.... .+
T Consensus 133 ----------------------~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~g~~~~----------~~ 168 (231)
T 3aji_A 133 ----------------------DAKDHYDATAMHRAAAK------------GNLKMVHILLFYKASTN----------IQ 168 (231)
T ss_dssp ----------------------TCCCTTSCCHHHHHHHH------------TCHHHHHHHHHTTCCSC----------CC
T ss_pred ----------------------CCcCCCCCcHHHHHHHc------------CCHHHHHHHHhcCCCcc----------cc
Confidence 12455788999999865 23344555555444443 67
Q ss_pred cccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchhhh
Q psy5573 249 NDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILGPT 327 (338)
Q Consensus 249 ~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~~~ 327 (338)
|..|+||||+|+..|+.++ +++|+++|+ +++.+|..|+||||+|++.++..|+..+
T Consensus 169 ~~~g~t~L~~A~~~~~~~~----------------------v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 169 DTEGNTPLHLACDEERVEE----------------------AKFLVTQGA-SIYIENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp CTTSCCHHHHHHHTTCHHH----------------------HHHHHHTTC-CSCCCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCCHHH----------------------HHHHHHCCC-CCCCCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 8899999999999999988 999999999 9999999999999999988877776544
No 15
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.9e-37 Score=258.51 Aligned_cols=212 Identities=21% Similarity=0.197 Sum_probs=151.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC--------CCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHD--------VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD 81 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~--------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~ 81 (338)
+.+||+.||..|+.++|++||+.|.+ ++..+ ..|.||||+|+..++. ..++++|++.|++
T Consensus 11 ~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~-~~~~t~L~~a~~~~~~-----------~~~v~~Ll~~Gad 78 (269)
T 4b93_B 11 EVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAAD-PEFCHPLCQCPKCAPA-----------QKRLAKVPASGLG 78 (269)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------------------CCCC
T ss_pred chhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccC-ccCCCHHHHHHHhCCH-----------HHHHHHHHHCCCC
Confidence 78999999999999999999998875 34444 6799999999988875 2467778889999
Q ss_pred CcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHH
Q psy5573 82 VNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTIL 161 (338)
Q Consensus 82 ~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 161 (338)
+|.+|.+|+||||+|+.. |+.+++++|++.|++++..+.. |.||+|+|+..+...+..++...+.++
T Consensus 79 vn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~----------- 145 (269)
T 4b93_B 79 VNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGARNAD-QAVPLHLACQQGHFQVVKCLLDSNAKP----------- 145 (269)
T ss_dssp TTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCCCTT-CCCHHHHHHHHTCHHHHHHHHHTTCCS-----------
T ss_pred CCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCccCCC-CCCccccccccChHHHHHHHHHCCCCC-----------
Confidence 999999999999999998 9999999999999999999988 999999999777654433332222111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhh
Q psy5573 162 DRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNF 241 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (338)
...+..|.||||+|++. +..+.++.++..+.+..
T Consensus 146 -----------------------------n~~d~~g~TpL~~A~~~------------g~~~~v~~Ll~~gadvn----- 179 (269)
T 4b93_B 146 -----------------------------NKKDLSGNTPLIYACSG------------GHHELVALLLQHGASIN----- 179 (269)
T ss_dssp -----------------------------CCCCTTCCCHHHHHHHT------------TCGGGHHHHHHTTCCTT-----
T ss_pred -----------------------------CCCCCCCCCHHHHHHHC------------CCHHHHHHHHHCCCCCC-----
Confidence 12466889999999875 33345566666555543
Q ss_pred hhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcC
Q psy5573 242 SLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAG 320 (338)
Q Consensus 242 ~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~ 320 (338)
.++..|+||||+|+..|+.++ |++|+++|+ +++.+|.+|+||||+|++.++
T Consensus 180 -----~~~~~g~t~Lh~A~~~g~~~~----------------------v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 180 -----ASNNKGNTALHEAVIEKHVFV----------------------VELLLLHGA-SVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp -----CBCTTSCBHHHHHHHTTCHHH----------------------HHHHHHTTC-CSCCCCTTSCCSGGGSCTTCH
T ss_pred -----ccccCCCcHHHHHHHcCCHHH----------------------HHHHHHCCC-CCCCcCCCCCCHHHHHHhCCc
Confidence 788999999999999999988 999999999 999999999999999987653
No 16
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.9e-35 Score=249.70 Aligned_cols=237 Identities=25% Similarity=0.269 Sum_probs=191.7
Q ss_pred CCCCCCCC-----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Q psy5573 2 FSGATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76 (338)
Q Consensus 2 ~~g~~~n~-----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll 76 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|+
T Consensus 26 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll 92 (285)
T 1wdy_A 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFLLAAIAGSV------------KLLKLFL 92 (285)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCH------------HHHHHHH
T ss_pred HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCH------------HHHHHHH
Confidence 56888875 8999999999999999999999999999998 8999999999999998 5566666
Q ss_pred HCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCcc----------CCCCCCCHHHHHhhcCC-hhHHHHHhh
Q psy5573 77 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV----------DGKTGKTPLLHAGKGAR-EVNTVLLYF 145 (338)
Q Consensus 77 ~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~----------~~~~g~tpL~~A~~~~~-~~~~~ll~~ 145 (338)
++|++++.++..|.||||+|+.. ++.+++++|+++|++++.. +.. |.||||+|+..+. +.++.|+..
T Consensus 93 ~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ 170 (285)
T 1wdy_A 93 SKGADVNECDFYGFTAFMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKG-GATALMDAAEKGHVEVLKILLDE 170 (285)
T ss_dssp HTTCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCC-CCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HcCCCCCccCcccCCHHHHHHHh-CCHHHHHHHHHhCCCcccccccHHHHHhhccC-CCcHHHHHHHcCCHHHHHHHHHh
Confidence 77889999999999999999998 9999999999999999887 555 9999999997766 566666666
Q ss_pred hhhhhhhhcCCCccHHHHHHHHH-----HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccc
Q psy5573 146 INEIFKLMANNDTTILDRLDEMK-----SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLD 220 (338)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~ 220 (338)
.+...+..+..+.++++.+.... ..+.+.+...+..- ...+..|.||||+|++.+
T Consensus 171 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~~------------ 230 (285)
T 1wdy_A 171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV--------NVRGERGKTPLILAVEKK------------ 230 (285)
T ss_dssp SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS--------SCCCTTSCCHHHHHHHTT------------
T ss_pred cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC--------CCcCCCCCcHHHHHHHcC------------
Confidence 57777888888899988765432 45666676665431 135678999999998752
Q ss_pred cccchhHHHH-hhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCC
Q psy5573 221 EMKSIKLELT-KAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTK 299 (338)
Q Consensus 221 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~ 299 (338)
..+.++.++. .+... +.+|..|+||||+|++.|+.++ +++|+++|+
T Consensus 231 ~~~~v~~Ll~~~g~~~----------~~~~~~g~t~l~~A~~~~~~~i----------------------~~~Ll~~Ga- 277 (285)
T 1wdy_A 231 HLGLVQRLLEQEHIEI----------NDTDSDGKTALLLAVELKLKKI----------------------AELLCKRGA- 277 (285)
T ss_dssp CHHHHHHHHHSSSCCT----------TCCCTTSCCHHHHHHHTTCHHH----------------------HHHHHHHSS-
T ss_pred CHHHHHHHHhccCCCc----------cccCCCCCcHHHHHHHcCcHHH----------------------HHHHHHcCC-
Confidence 2333444444 33333 2678999999999999999999 888888888
Q ss_pred CCCCCCC
Q psy5573 300 EFGPGDY 306 (338)
Q Consensus 300 ~~~~~d~ 306 (338)
+++.+|.
T Consensus 278 ~~~~~d~ 284 (285)
T 1wdy_A 278 STDCGDL 284 (285)
T ss_dssp CSCCSSC
T ss_pred CCCcccc
Confidence 7777763
No 17
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.2e-36 Score=247.02 Aligned_cols=211 Identities=22% Similarity=0.182 Sum_probs=167.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC--CCCcc-cC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG--ADVNF-KS 86 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g--~~~~~-~~ 86 (338)
|.||||+|+..|+.+++++|+++++++....+..|.||||+|+..|+.++++ +|++.| .+++. ++
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~------------~Ll~~~~~~~~~~~~~ 69 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITS------------FLLSKMENVNLDDYPD 69 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHH------------HHHHTCTTCCGGGCCC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHH------------HHHhccccccccccCC
Confidence 7899999999999999999999998877644489999999999999985555 455555 56666 78
Q ss_pred CCCChHHHHHHHhCCCHHHHHHHHhcC--CCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHH
Q psy5573 87 ATGFTALHMACRFHDDDSIVRKLLRHG--AYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRL 164 (338)
Q Consensus 87 ~~g~tpLh~A~~~~~~~~~v~~Ll~~g--~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 164 (338)
..|.||||+|+.. ++.+++++|+++| ++++..+.. |.||||+|+..+...+..++...+.+.
T Consensus 70 ~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------------- 133 (228)
T 2dzn_A 70 DSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKITNQ-GVTCLHLAVGKKWFEVSQFLIENGASV-------------- 133 (228)
T ss_dssp TTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCCS--------------
T ss_pred CCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccCCcC-CCCHHHHHHHcCCHhHHHHHHHcCCCc--------------
Confidence 9999999999998 9999999999998 888888888 999999999877754333333222111
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhh-cCCccchhhhh
Q psy5573 165 DEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKA-FGPGDYNNFSL 243 (338)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 243 (338)
...+..|.||||+|+..+ ..+.++.++..+ ...
T Consensus 134 --------------------------~~~~~~g~t~L~~A~~~~------------~~~~v~~Ll~~g~~~~-------- 167 (228)
T 2dzn_A 134 --------------------------RIKDKFNQIPLHRAASVG------------SLKLIELLCGLGKSAV-------- 167 (228)
T ss_dssp --------------------------CCCCTTSCCHHHHHHHTT------------CHHHHHHHHTTTCCCS--------
T ss_pred --------------------------cccCCCCCCHHHHHHHcC------------CHHHHHHHHhcCcccc--------
Confidence 124567889999998652 233444555444 222
Q ss_pred hhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHH-HcCCCCCCCCCCCCCcHHHHHHHhc
Q psy5573 244 LKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLI-LEGTKEFGPGDYNNFSLLKVAKNDA 319 (338)
Q Consensus 244 ~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll-~~g~~~~~~~d~~g~T~Lh~A~~~~ 319 (338)
+.+|..|+||||+|+..|+.++ +++|+ ++|+ +++.+|.+|+||||+|++..
T Consensus 168 --~~~d~~g~t~L~~A~~~~~~~~----------------------v~~Ll~~~ga-~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 168 --NWQDKQGWTPLFHALAEGHGDA----------------------AVLLVEKYGA-EYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp --CCCCTTSCCHHHHHHHTTCHHH----------------------HHHHHHHHCC-CSCCBCTTSCBGGGGCSSTT
T ss_pred --cCcCCCCCCHHHHHHHcCCHHH----------------------HHHHHHhcCC-CCCccCCCCCcHHHHHHHHH
Confidence 2678999999999999999988 99999 8899 99999999999999997653
No 18
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=9.4e-35 Score=255.93 Aligned_cols=268 Identities=23% Similarity=0.150 Sum_probs=195.5
Q ss_pred CCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHC
Q psy5573 3 SGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDN 78 (338)
Q Consensus 3 ~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~ 78 (338)
.|+++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|+++
T Consensus 47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~------------~iv~~Ll~~ 113 (351)
T 3utm_A 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKD-KGGLVPLHNACSYGHY------------EVTELLLKH 113 (351)
T ss_dssp TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCH------------HHHHHHHHT
T ss_pred cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHCCCH------------HHHHHHHHC
Confidence 4778876 9999999999999999999999999999998 8999999999999998 556666677
Q ss_pred CCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh---------------------
Q psy5573 79 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE--------------------- 137 (338)
Q Consensus 79 g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~--------------------- 137 (338)
|++++.++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||+++|+..+..
T Consensus 114 g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (351)
T 3utm_A 114 GACVNAMDLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVNCH-GKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL 191 (351)
T ss_dssp TCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred CCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccCC-CCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccH
Confidence 889999999999999999998 9999999999999999999988 99999988643332
Q ss_pred -hHHHHHhhhhhhhhhhcCCCccHHHHHHHH----HHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccc
Q psy5573 138 -VNTVLLYFINEIFKLMANNDTTILDRLDEM----KSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKND 212 (338)
Q Consensus 138 -~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~ 212 (338)
.+..++.... ........+.++++.+... ...+.+.+...+..- ...+..|.||||+|++.
T Consensus 192 ~~~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~--------~~~~~~g~t~L~~A~~~----- 257 (351)
T 3utm_A 192 AKVKKTLALEI-INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV--------NEKNKDFMTPLHVAAER----- 257 (351)
T ss_dssp HHHHHHTTTCC-TTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT--------TCCCTTCCCHHHHHHHT-----
T ss_pred HHHHHHHHhhc-ccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc--------CCcCCCCCCHHHHHHHc-----
Confidence 1111221111 1112335567888776653 345666676665431 23577899999999876
Q ss_pred hhhhhccccccchhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhcccC----CCCCCC--c
Q psy5573 213 TTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLADAN----NDTTIL--D 285 (338)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~----~~~~~l--~ 285 (338)
+..+.++.++..+.... .+|..|+||||+|+..|+.+++ .|+++++|.+ .|.|++ .
T Consensus 258 -------g~~~~v~~Ll~~ga~~n----------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 258 -------AHNDVMEVLHKHGAKMN----------ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp -------TCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred -------CCHHHHHHHHHCCCCCC----------CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 23345556666555443 7899999999999999999999 8999999965 677888 8
Q ss_pred hHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcC
Q psy5573 286 RLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAG 320 (338)
Q Consensus 286 ~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~ 320 (338)
..+++++|.+.++ .....+.++|..|++.++
T Consensus 321 ~~~~~~~l~~~~~----~~~~~~~~~l~~A~~~gd 351 (351)
T 3utm_A 321 NEAVQQILSESTP----MRTSDVDYRLLEASKAGD 351 (351)
T ss_dssp CHHHHHHHHHC------------------------
T ss_pred hHHHHHHHHhccc----cccCcceeehhhhhccCC
Confidence 8889999998776 456788899999998764
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.6e-36 Score=266.07 Aligned_cols=224 Identities=19% Similarity=0.131 Sum_probs=176.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++| ++.|++++ +.+|
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~~~v~~L------------l~~g~~~~--~~~g 84 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQN-RFGCTALHLACKFGCVDTAKYL------------ASVGEVHS--LWHG 84 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHCCHHHHHHH------------HHHCCCCC--CBTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCcHHHHHHHcCCHHHHHHH------------HHCCCCcc--ccCC
Confidence 9999999999999999999999999999998 8999999999999998555555 45555444 3589
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhc----CCCCCc-----------------cCCCCCCCHHHHHhhcC--ChhHHHHHhhh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRH----GAYYNV-----------------VDGKTGKTPLLHAGKGA--REVNTVLLYFI 146 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~----g~~~~~-----------------~~~~~g~tpL~~A~~~~--~~~~~~ll~~~ 146 (338)
.||||+|+.. ++.+++++|++. |++++. .+.. |.||||+|+..+ ...+..+|...
T Consensus 85 ~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~t~L~~A~~~g~~~~~~v~~Ll~~ 162 (364)
T 3ljn_A 85 QKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCK-GQTALHWCVGLGPEYLEMIKILVQL 162 (364)
T ss_dssp BCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEES-CCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCC-CCCHHHHHHHcCCchHHHHHHHHHc
Confidence 9999999998 999999999998 888776 7766 999999999887 54333333322
Q ss_pred hhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchh
Q psy5573 147 NEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIK 226 (338)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
+.+++ ..+..|.||||+|+.. ...+.++
T Consensus 163 ga~~~----------------------------------------~~d~~g~t~L~~A~~~------------g~~~~v~ 190 (364)
T 3ljn_A 163 GASPT----------------------------------------AKDKADETPLMRAMEF------------RNREALD 190 (364)
T ss_dssp TCCTT----------------------------------------CCCTTSCCHHHHHHHT------------TCHHHHH
T ss_pred CCCCc----------------------------------------ccCCCCCCHHHHHHHc------------CCHHHHH
Confidence 32221 2455678888888765 2334455
Q ss_pred HHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCC
Q psy5573 227 LELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDY 306 (338)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~ 306 (338)
.++..+..... .+.+.+|..|+||||+|+..|+.++ |++|+++|+ +++.+|.
T Consensus 191 ~Ll~~g~~~~~-----~~~~~~~~~g~t~L~~A~~~g~~~~----------------------v~~Ll~~ga-d~~~~d~ 242 (364)
T 3ljn_A 191 LMMDTVPSKSS-----LRLDYANKQGNSHLHWAILINWEDV----------------------AMRFVEMGI-DVNMEDN 242 (364)
T ss_dssp HHHHHCSCSSS-----CCTTCCCTTCCCTTHHHHTTTCHHH----------------------HHHHHTTTC-CTTCCCT
T ss_pred HHHhccccccc-----ccccccCCCCCcHHHHHHHcCCHHH----------------------HHHHHHcCC-CCCCCCC
Confidence 55555444110 0122678899999999999999988 999999999 9999999
Q ss_pred CCCcHHHHHHHhcCccchhhhhhh
Q psy5573 307 NNFSLLKVAKNDAGETILGPTMIQ 330 (338)
Q Consensus 307 ~g~T~Lh~A~~~~~~~i~~~~~~~ 330 (338)
.|+||||+|+..++.+++..++-+
T Consensus 243 ~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 243 EHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhChHHHHHHHHHc
Confidence 999999999999999998777654
No 20
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.6e-34 Score=236.37 Aligned_cols=195 Identities=24% Similarity=0.208 Sum_probs=159.0
Q ss_pred CCCCCCCCC-----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Q psy5573 1 MFSGATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLL 75 (338)
Q Consensus 1 l~~g~~~n~-----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~L 75 (338)
|++|++++. |.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++++.
T Consensus 11 l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~------- 82 (223)
T 2f8y_A 11 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILIRNRA------- 82 (223)
T ss_dssp EETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHBTT-------
T ss_pred HHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCHHHHHHHHHcCC-------
Confidence 357888865 9999999999999999999999999999888 899999999999999855555544332
Q ss_pred HHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhH-HHHHhhhhhhhhhhc
Q psy5573 76 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVN-TVLLYFINEIFKLMA 154 (338)
Q Consensus 76 l~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~-~~ll~~~~~~~~~~~ 154 (338)
.+++.++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+ +.|+.. +.+
T Consensus 83 ----~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~-g~~----- 150 (223)
T 2f8y_A 83 ----TDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKN-GAN----- 150 (223)
T ss_dssp ----SCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCBCTT-SCBHHHHHHHTTCHHHHHHHHHT-TCC-----
T ss_pred ----CCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCcCCC-CCcHHHHHHHcCCHHHHHHHHHc-CCC-----
Confidence 48888999999999999998 9999999999999999999987 9999999997766433 222221 100
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcC
Q psy5573 155 NNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFG 234 (338)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (338)
T Consensus 151 -------------------------------------------------------------------------------- 150 (223)
T 2f8y_A 151 -------------------------------------------------------------------------------- 150 (223)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccchhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHH
Q psy5573 235 PGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKV 314 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~ 314 (338)
. +.+|..|.||||+|++.|+.++ +++|+++|+ +++.+|..|+||||+
T Consensus 151 ~----------~~~~~~g~t~L~~A~~~~~~~~----------------------v~~Ll~~ga-~~~~~~~~g~t~l~~ 197 (223)
T 2f8y_A 151 K----------DMQNNREETPLFLAAREGSYET----------------------AKVLLDHFA-NRDITDHMDRLPRDI 197 (223)
T ss_dssp T----------TCCCTTCCCHHHHHHHHTCHHH----------------------HHHHHHTTC-CTTCCCTTCCCHHHH
T ss_pred C----------CCcCCCCcCHHHHHHHcCCHHH----------------------HHHHHHcCC-CCccccccCCCHHHH
Confidence 0 0346788899999999888888 899999998 889999999999999
Q ss_pred HHHhcCccchhhhh
Q psy5573 315 AKNDAGETILGPTM 328 (338)
Q Consensus 315 A~~~~~~~i~~~~~ 328 (338)
|++.++.+|+..++
T Consensus 198 A~~~~~~~i~~~L~ 211 (223)
T 2f8y_A 198 AQERMHHDIVRLLD 211 (223)
T ss_dssp HHHTTCHHHHHHHH
T ss_pred HHHhcchHHHHHHH
Confidence 99998888876554
No 21
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.9e-34 Score=236.63 Aligned_cols=224 Identities=20% Similarity=0.128 Sum_probs=179.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccC-CC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKS-AT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~-~~ 88 (338)
|.||||.|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++.|.+++..+ ..
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~~~~~~~~~~~~ 75 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGYDVRQPD-KENVTLLHWAAINNRI------------DLVKYYISKGAIVDQLGGDL 75 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCBTTT
T ss_pred cchHHHHHHHcCChHHHHHHHHcCCCcCCCC-CCCCCHHHHHHHhCCH------------HHHHHHHHcCCcchhhcCCc
Confidence 8999999999999999999999999999998 8999999999999998 55555556667777554 55
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHH
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMK 168 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++...+...
T Consensus 76 ~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~~~~~~------------------ 135 (240)
T 3eu9_A 76 NSTPLHWATRQ-GHLSMVVQLMKYGADPSLIDGE-GCSCIHLAAQFGHTSIVAYLIAKGQDV------------------ 135 (240)
T ss_dssp TBCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCT------------------
T ss_pred CCChhHHHHHc-CCHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCHHHHHHHHHhcCCCc------------------
Confidence 99999999998 9999999999999999999988 999999999877754333332221111
Q ss_pred HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccc
Q psy5573 169 SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK 248 (338)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (338)
...+..|.||+|+++..... ...+..++..+.... ..
T Consensus 136 ----------------------~~~~~~g~t~l~~a~~~~~~-----------~~~~~~L~~~~~~~~----------~~ 172 (240)
T 3eu9_A 136 ----------------------DMMDQNGMTPLMWAAYRTHS-----------VDPTRLLLTFNVSVN----------LG 172 (240)
T ss_dssp ----------------------TCCCTTSCCHHHHHHHHCCS-----------STTHHHHHHTTCCTT----------CC
T ss_pred ----------------------cccCCCCCcHHHHHHHhCCh-----------HHHHHHHHhcCCCcc----------hh
Confidence 12456788999998754221 223344444444332 44
Q ss_pred cc-cCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchhhh
Q psy5573 249 ND-AGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILGPT 327 (338)
Q Consensus 249 ~~-~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~~~ 327 (338)
+. .|.||||+|+..|+.++ +++|+++|+ +++.+|..|+||||+|++.++.+++..+
T Consensus 173 ~~~~g~t~L~~A~~~~~~~~----------------------v~~Ll~~g~-~~~~~~~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 173 DKYHKNTALHWAVLAGNTTV----------------------ISLLLEAGA-NVDAQNIKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp CTTTCCCHHHHHHHHTCHHH----------------------HHHHHHHTC-CTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred hccCCCcHHHHHHHcCCHHH----------------------HHHHHHcCC-CCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 54 89999999999999988 999999999 9999999999999999999999998877
Q ss_pred hhhhh
Q psy5573 328 MIQLS 332 (338)
Q Consensus 328 ~~~~~ 332 (338)
+-...
T Consensus 230 ~~~~~ 234 (240)
T 3eu9_A 230 QEARQ 234 (240)
T ss_dssp HHHC-
T ss_pred HHhhh
Confidence 65543
No 22
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=9.8e-35 Score=248.68 Aligned_cols=219 Identities=20% Similarity=0.119 Sum_probs=174.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++..+ |+||||+|+..|+. +++++|+++|++++.+|..|
T Consensus 31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~---g~t~L~~A~~~g~~------------~~v~~Ll~~ga~~~~~d~~g 95 (285)
T 3kea_A 31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE---NEFPLHQAATLEDT------------KIVKILLFSGLDDSQFDDKG 95 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT---TCCHHHHHTTSSSC------------HHHHHHHHTTCCTTCCCTTS
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC---CCCHHHHHHHcCCH------------HHHHHHHHCCCCCCCcCCCC
Confidence 9999999999999999999999999998763 89999999999998 55666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCC-CCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTG-KTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMK 168 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g-~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
.||||+|+.. ++.+++++|+++|++++..+.. | .||||+|+..+...+..++...+..
T Consensus 96 ~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~-g~~t~L~~A~~~~~~~~v~~Ll~~g~~------------------- 154 (285)
T 3kea_A 96 NTALYYAVDS-GNMQTVKLFVKKNWRLMFYGKT-GWKTSFYHAVMLNDVSIVSYFLSEIPS------------------- 154 (285)
T ss_dssp CCHHHHHHHT-TCHHHHHHHHHHCGGGGGCSSS-GGGSHHHHHHHTTCHHHHHHHHTTSCT-------------------
T ss_pred CcHHHHHHHc-CCHHHHHHHHhcCCCCCccCCC-CCCCHHHHHHHcCCHHHHHHHHhCCCc-------------------
Confidence 9999999998 9999999999999999999988 8 8999999987775433333322211
Q ss_pred HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccc
Q psy5573 169 SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK 248 (338)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (338)
.. ....|.||||+|+.. +..+.++.++..+.... .+
T Consensus 155 -------------~~---------~~~~g~t~L~~A~~~------------g~~~~v~~Ll~~gad~n----------~~ 190 (285)
T 3kea_A 155 -------------TF---------DLAILLSCIHITIKN------------GHVDMMILLLDYMTSTN----------TN 190 (285)
T ss_dssp -------------TC---------CCSTHHHHHHHHHHT------------TCHHHHHHHHHHHHHTC----------TT
T ss_pred -------------cc---------cccCCccHHHHHHHc------------ChHHHHHHHHHcCCCCC----------cc
Confidence 00 112678899999765 23344555555554443 77
Q ss_pred cccCCCH-HHHHHHhCChhHH-HHHHhhcccCCC---CCCCchHHHHHHHHHcCCCCCCCCCCCCC
Q psy5573 249 NDAGETI-LDIAKKRGFPLLE-ELEKKLADANND---TTILDRLDEMKSLILEGTKEFGPGDYNNF 309 (338)
Q Consensus 249 ~~~g~Tp-Lh~A~~~g~~~i~-~ll~~~~d~~~~---~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~ 309 (338)
|..|+|| ||+|+..|+.+++ .|++++++.+.. ....++.+++++|+++|+ ++........
T Consensus 191 ~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~a~~~~~~~iv~~Ll~~g~-~~~~~~~~~~ 255 (285)
T 3kea_A 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHV-EYKSDSYTKD 255 (285)
T ss_dssp CCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTGGGGTTTCHHHHHHHHHHHH-HHTTCTTTTT
T ss_pred cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCChhhhhcCCHHHHHHHHHcCC-CCCCccccch
Confidence 8999998 9999999999998 888899998733 334499999999999999 7766655443
No 23
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=5e-35 Score=255.40 Aligned_cols=246 Identities=17% Similarity=0.133 Sum_probs=168.4
Q ss_pred CCCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHc----------------CCHHHH
Q psy5573 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHF----------------NHRHIA 60 (338)
Q Consensus 1 l~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~----------------g~~~~v 60 (338)
+++|+++|. |.|+++ |+.++|+.|+++|++++. +++++|+.. .+..+.
T Consensus 39 l~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~-------~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~ 106 (327)
T 1sw6_A 39 LSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEI-------QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFD 106 (327)
T ss_dssp TTSSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------------------------------CHH
T ss_pred hhCCcccccCCCCCCcccC-----chhHHHHHHHHhccCCcc-------ccchHhhhcccccccccccCCccchhHHHHH
Confidence 456777766 777766 777777777777766432 223333222 011111
Q ss_pred HHHHHcCHHHHHHHHHHCCCCCcc-cCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCC---
Q psy5573 61 ALLIHHGAKEIVDLLLDNGADVNF-KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAR--- 136 (338)
Q Consensus 61 ~~Ll~~~~~~~~~~Ll~~g~~~~~-~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~--- 136 (338)
+.+ .+++++|++.|+++|. +|..|+||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..++
T Consensus 107 ~~~-----~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~d~~-g~TpLh~A~~~g~~~~ 179 (327)
T 1sw6_A 107 SLL-----QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYGDNM-GESCLVKAVKSVNNYD 179 (327)
T ss_dssp HHH-----HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBCCTT-CCCHHHHHHHSSHHHH
T ss_pred hhH-----HHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHhccccc
Confidence 111 3778888899999999 899999999999998 9999999999999999999988 9999999998776
Q ss_pred -hhHHHHHhhhhhhhhhhcCCCccHHHHHHH-----HHHHHHHHHHhcCC--------CC----CCCcchhHHHhhcCCC
Q psy5573 137 -EVNTVLLYFINEIFKLMANNDTTILDRLDE-----MKSLILEVTKEFGP--------GD----YNNFSLLKVAKNDAGE 198 (338)
Q Consensus 137 -~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------~~----~~~~~~~~~~~~~~~~ 198 (338)
+.+..++.......+..+..+.++++.+.. ....+.+.+...+. .. ...........+..|.
T Consensus 180 ~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~ 259 (327)
T 1sw6_A 180 SGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259 (327)
T ss_dssp TTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred HHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence 677888887767788888999999998765 22233333332210 00 0001222345678899
Q ss_pred CHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccC
Q psy5573 199 TILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADAN 278 (338)
Q Consensus 199 t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~ 278 (338)
||||+++. ++.++.. + .+.+|..|+||||+|++.|+.++
T Consensus 260 t~L~~a~~------------------~~~Ll~~--~----------~n~~d~~G~TpLh~A~~~g~~~~----------- 298 (327)
T 1sw6_A 260 DSILENLD------------------LKWIIAN--M----------LNAQDSNGDTCLNIAARLGNISI----------- 298 (327)
T ss_dssp CHHHHHCS------------------HHHHHHH--T----------TTCCCTTSCCHHHHHHHHCCHHH-----------
T ss_pred ChhHHHHH------------------HHHHHHh--C----------CCCCCCCCCCHHHHHHHcCCHHH-----------
Confidence 99999852 3344443 1 22678999999999999999998
Q ss_pred CCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHh
Q psy5573 279 NDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKND 318 (338)
Q Consensus 279 ~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~ 318 (338)
|++|+++|+ +++.+|.+|+||||+|++.
T Consensus 299 -----------v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 299 -----------VDALLDYGA-DPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp -----------HHHHHHTTC-CTTCCCTTSCCGGGGTCC-
T ss_pred -----------HHHHHHcCC-CCcccCCCCCCHHHHHHhc
Confidence 999999999 9999999999999999875
No 24
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=2.3e-33 Score=232.92 Aligned_cols=211 Identities=19% Similarity=0.180 Sum_probs=158.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc-CCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
|.||||+|+..|+.+++++|++. |.+++.++ ..|+||||+|+..|+.+++++|+++++. +. ....+.+|..
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~------~~~~~~~~~~ 74 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRG-AMGETALHIAALYDNLEAAMVLMEAAPE-LV------FEPMTSELYE 74 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHCGG-GG------GCCCCSTTTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCC-CCCCCHHHHHHHcCCHHHHHHHHHcCch-hc------cccccccCCC
Confidence 89999999999999999999997 99999998 8999999999999999776666665441 00 0122677889
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHH
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMK 168 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
|.||||+|+.. ++.+++++|+++|++++..+.. +.+..
T Consensus 75 g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~---~~~~~-------------------------------------- 112 (232)
T 2rfa_A 75 GQTALHIAVIN-QNVNLVRALLARGASVSARATG---SVFHY-------------------------------------- 112 (232)
T ss_dssp TCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCS---GGGSC--------------------------------------
T ss_pred CcCHHHHHHHc-CCHHHHHHHHhCCCCCCcccCC---cceee--------------------------------------
Confidence 99999999998 9999999999999999887653 10000
Q ss_pred HHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccc
Q psy5573 169 SLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK 248 (338)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (338)
. ....+..|.||||+|+.. +..+.++.++..+.... .+
T Consensus 113 ----------~----------~~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~ga~~~----------~~ 150 (232)
T 2rfa_A 113 ----------R----------PHNLIYYGEHPLSFAACV------------GSEEIVRLLIEHGADIR----------AQ 150 (232)
T ss_dssp ----------C----------TTCSCCCCSSHHHHHHHH------------TCHHHHHHHHHTTCCTT----------CC
T ss_pred ----------c----------ccccccCCCCHHHHHHHc------------CCHHHHHHHHHCCCCCC----------CC
Confidence 0 001233455555555543 12223333333333322 66
Q ss_pred cccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCC------CCCCCCCCcHHHHHHHhcCcc
Q psy5573 249 NDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEF------GPGDYNNFSLLKVAKNDAGET 322 (338)
Q Consensus 249 ~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~------~~~d~~g~T~Lh~A~~~~~~~ 322 (338)
|..|+||||+|+..|+.+++ ..++++|+++|+ +. +.+|..|+||||+|++.++.+
T Consensus 151 d~~g~t~L~~A~~~~~~~~~------------------~~i~~~Ll~~g~-~~~~~~~~~~~~~~g~tpl~~A~~~g~~~ 211 (232)
T 2rfa_A 151 DSLGNTVLHILILQPNKTFA------------------CQMYNLLLSYDG-GDHLKSLELVPNNQGLTPFKLAGVEGNIV 211 (232)
T ss_dssp CTTSCCHHHHHHTCSCHHHH------------------HHHHHHHHHTTC-SCSSCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred CCCCCCHHHHHHHcCChHHH------------------HHHHHHHHhcCC-chhhhhhhccCCCCCCCHHHHHHHcCCHH
Confidence 88999999999999998872 123599999999 66 689999999999999999999
Q ss_pred chhhhhhhh
Q psy5573 323 ILGPTMIQL 331 (338)
Q Consensus 323 i~~~~~~~~ 331 (338)
++..++-+-
T Consensus 212 ~v~~Ll~~g 220 (232)
T 2rfa_A 212 MFQHLMQKR 220 (232)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 988776543
No 25
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=236.34 Aligned_cols=199 Identities=19% Similarity=0.107 Sum_probs=160.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCC
Q psy5573 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 122 (338)
Q Consensus 43 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~ 122 (338)
+|+||||+|+..|+. +++++|++.|++++.+|.+|.||||+|+.. |+.+++++|+++|++++..+..
T Consensus 2 ~g~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~ 68 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQ------------LSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGVTAD 68 (261)
T ss_dssp --CCHHHHHHHHTCH------------HHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCCHHHHHHHcCCH------------HHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCCCCC
Confidence 589999999999998 555666677889999999999999999998 9999999999999999999988
Q ss_pred CCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHH
Q psy5573 123 TGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILD 202 (338)
Q Consensus 123 ~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~ 202 (338)
|.||||+|+..+...+..++...+... . .+..|.||||
T Consensus 69 -g~t~L~~A~~~~~~~~v~~Ll~~g~~~---------------------------------~--------~~~~g~t~L~ 106 (261)
T 2xai_A 69 -WHTPLFNACVSGSWDCVNLLLQHGASV---------------------------------Q--------PESDLASPIH 106 (261)
T ss_dssp -SCCHHHHHHHHTCHHHHHHHHHTTCCS---------------------------------S--------CSCTTCCHHH
T ss_pred -CCCHHHHHHHcCCHHHHHHHHHCCCCC---------------------------------C--------CCCCCCCHHH
Confidence 999999999777754433333222111 0 1235789999
Q ss_pred HHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhcccC---
Q psy5573 203 IFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLADAN--- 278 (338)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~--- 278 (338)
+++.. +..+.++.++..+.... .+|..|.||||+|+..|+.+++ .|++.+++.+
T Consensus 107 ~A~~~------------~~~~~v~~Ll~~g~~~~----------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~ 164 (261)
T 2xai_A 107 EAARR------------GHVECVNSLIAYGGNID----------HKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 164 (261)
T ss_dssp HHHHT------------TCHHHHHHHHHTTCCTT----------CCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTCCB
T ss_pred HHHHc------------CcHHHHHHHHHcCCCCC----------cCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCC
Confidence 99865 22344555555554433 6789999999999999999998 8999999876
Q ss_pred CCCCCC------chHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhc
Q psy5573 279 NDTTIL------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDA 319 (338)
Q Consensus 279 ~~~~~l------~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~ 319 (338)
.|.|+| ++.+++++|+++|+ +++.+|.+|+||||+|+...
T Consensus 165 ~g~t~Lh~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 165 GQDSPLHAVARTASEELACLLMDFGA-DTQAKNAEGKRPVELVPPES 210 (261)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTTC-CTTCCCTTSCCGGGGSCTTC
T ss_pred CCCChHHHHHHcCCHHHHHHHHHcCC-CCCCcCCCCCChhhhccccc
Confidence 577887 99999999999999 99999999999999999544
No 26
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.9e-34 Score=253.64 Aligned_cols=250 Identities=17% Similarity=0.126 Sum_probs=175.8
Q ss_pred CCCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHH--HHHHH
Q psy5573 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK--EIVDL 74 (338)
Q Consensus 1 l~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~--~~~~~ 74 (338)
|++|+++|. |.||||+|+..|+.++|++|+++|++++. ..|.||||+|+..|+.+++++|++++.. .....
T Consensus 40 l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 40 IETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHH
Confidence 357899998 99999999999999999999999996653 4699999999999999888888876321 00111
Q ss_pred HHHC-------CCCCcccCCCCChHHHHHHHhCC--CHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhh
Q psy5573 75 LLDN-------GADVNFKSATGFTALHMACRFHD--DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYF 145 (338)
Q Consensus 75 Ll~~-------g~~~~~~~~~g~tpLh~A~~~~~--~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~ 145 (338)
++.. ..+++.++..|.||||+|+.. | +.+++++|+++|++++..+.. |.||||+|+..+...+..+|..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~~~v~~Ll~~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 117 LLNECDEREVNEIGSHVKHCKGQTALHWCVGL-GPEYLEMIKILVQLGASPTAKDKA-DETPLMRAMEFRNREALDLMMD 194 (364)
T ss_dssp HHTCCCCCCEEEETTEEEEESCCCHHHHHHHS-CGGGHHHHHHHHHHTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhcchHhhhhhccccCCCCCCCHHHHHHHc-CCchHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHh
Confidence 1111 112333888999999999998 9 999999999999999999988 9999999998777544444333
Q ss_pred hhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccch
Q psy5573 146 INEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSI 225 (338)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
.+.... .......+..|.||||+|+.. +..+.+
T Consensus 195 ~g~~~~-----------------------------------~~~~~~~~~~g~t~L~~A~~~------------g~~~~v 227 (364)
T 3ljn_A 195 TVPSKS-----------------------------------SLRLDYANKQGNSHLHWAILI------------NWEDVA 227 (364)
T ss_dssp HCSCSS-----------------------------------SCCTTCCCTTCCCTTHHHHTT------------TCHHHH
T ss_pred cccccc-----------------------------------cccccccCCCCCcHHHHHHHc------------CCHHHH
Confidence 222100 000113567889999999754 334456
Q ss_pred hHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCC
Q psy5573 226 KLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPG 304 (338)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~ 304 (338)
+.++..+.... .+|..|+||||+|+..|+.+++ .|++++++.+....+ .++. .....
T Consensus 228 ~~Ll~~gad~~----------~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-----------~~~~-~~~~~ 285 (364)
T 3ljn_A 228 MRFVEMGIDVN----------MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACP-----------YHNG-TTVLP 285 (364)
T ss_dssp HHHHTTTCCTT----------CCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCT-----------TBSS-SSBCG
T ss_pred HHHHHcCCCCC----------CCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCc-----------ccCc-ccccc
Confidence 66666555543 7899999999999999999994 333333332100000 0011 22346
Q ss_pred CCCCCcHHHHHHHhcCccch
Q psy5573 305 DYNNFSLLKVAKNDAGETIL 324 (338)
Q Consensus 305 d~~g~T~Lh~A~~~~~~~i~ 324 (338)
+..|+|||++|+..++...+
T Consensus 286 ~~~~~~~l~~aa~~~~~~~v 305 (364)
T 3ljn_A 286 DRVVWLDFVPAAADPSKQEV 305 (364)
T ss_dssp GGCCCCTTSCSSCCHHHHHH
T ss_pred cccccccchhhhhccCHHHH
Confidence 78889999888887765444
No 27
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=7.7e-32 Score=218.71 Aligned_cols=191 Identities=24% Similarity=0.185 Sum_probs=157.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCC-CCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGH-DVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
+.||||.|+..|+.+.++.|+.++. +++..+ ..|.||||+|+..|+. +++++|++.|++++.++..
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~ 71 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVDEVD-TEGNTPLNIAVHNNDI------------EIAKALIDRGADINLQNSI 71 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCTT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCCCCC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCCCCCC
Confidence 8999999999999999999999876 999888 8999999999999998 5666666778899999999
Q ss_pred CChHHHHHHHhCCCHHHHHHHH-hcCCCCCccCCCCCCCHHHHHhhcCChh-HHHHHhhhhhhhhhhcCCCccHHHHHHH
Q psy5573 89 GFTALHMACRFHDDDSIVRKLL-RHGAYYNVVDGKTGKTPLLHAGKGAREV-NTVLLYFINEIFKLMANNDTTILDRLDE 166 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
|.||||+|+.. ++.+++++|+ ..+++++..+.. |.||||+|+..+... ++.|+.....
T Consensus 72 g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------ 131 (201)
T 3hra_A 72 SDSPYLYAGAQ-GRTEILAYMLKHATPDLNKHNRY-GGNALIPAAEKGHIDNVKLLLEDGRE------------------ 131 (201)
T ss_dssp SCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCCCTT-SCCSHHHHHHTTCHHHHHHHHHHCCC------------------
T ss_pred CCCHHHHHHHc-CCHHHHHHHHhccCcccccccCC-CCcHHHHHHHcCCHHHHHHHHHcCCC------------------
Confidence 99999999998 9999999999 567799999987 999999999777643 3333221100
Q ss_pred HHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhc
Q psy5573 167 MKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKV 246 (338)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (338)
+. +
T Consensus 132 ---------------~~--------------------------------------------------------------~ 134 (201)
T 3hra_A 132 ---------------DI--------------------------------------------------------------D 134 (201)
T ss_dssp ---------------CT--------------------------------------------------------------T
T ss_pred ---------------Cc--------------------------------------------------------------C
Confidence 00 0
Q ss_pred cccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchhh
Q psy5573 247 TKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILGP 326 (338)
Q Consensus 247 ~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~~ 326 (338)
.+|..|+||||+|+..+...- ++.+++++|+++|+ +++.+|..|+||||+|++.++.+++..
T Consensus 135 ~~~~~g~t~L~~A~~~~~~~~-----------------~~~~~v~~Ll~~ga-~~~~~~~~g~t~l~~A~~~~~~~~~~~ 196 (201)
T 3hra_A 135 FQNDFGYTALIEAVGLREGNQ-----------------LYQDIVKLLMENGA-DQSIKDNSGRTAMDYANQKGYTEISKI 196 (201)
T ss_dssp CCCTTSCCHHHHHHHSSCCSH-----------------HHHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred CCCCCCCCHHHHHHHhccchh-----------------hHHHHHHHHHHCCC-CCCccCCCCCCHHHHHHHcCCHhHHHH
Confidence 457789999999998887221 23445999999999 999999999999999999999888766
Q ss_pred hh
Q psy5573 327 TM 328 (338)
Q Consensus 327 ~~ 328 (338)
++
T Consensus 197 Ll 198 (201)
T 3hra_A 197 LA 198 (201)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 28
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3e-32 Score=229.33 Aligned_cols=194 Identities=24% Similarity=0.220 Sum_probs=151.4
Q ss_pred CCCCCCCCC-----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Q psy5573 1 MFSGATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLL 75 (338)
Q Consensus 1 l~~g~~~n~-----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~L 75 (338)
|++|++++. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+++++|
T Consensus 43 l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~v~~L------------ 109 (253)
T 1yyh_A 43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQIL------------ 109 (253)
T ss_dssp ---------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCHHHHHHH------------
T ss_pred HHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHH------------
Confidence 456777753 9999999999999999999999999999998 8999999999999998555554
Q ss_pred HHCCC-CCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhc
Q psy5573 76 LDNGA-DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMA 154 (338)
Q Consensus 76 l~~g~-~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~ 154 (338)
++.+. +++.++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.+.
T Consensus 110 l~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~---- 183 (253)
T 1yyh_A 110 IRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAVDDL-GKSALHWAAAVNNVDAAVVLLKNGANK---- 183 (253)
T ss_dssp HHSTTSCTTCCCTTCCCHHHHHHHH-TCSSHHHHHHHTTCCTTCBCTT-SCBHHHHHHHHTCHHHHHHHHHTTCCT----
T ss_pred HHcCCCCccccCCCCCcHHHHHHHc-ChHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCC----
Confidence 45554 8999999999999999998 9999999999999999999988 999999999777654433333222211
Q ss_pred CCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcC
Q psy5573 155 NNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFG 234 (338)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (338)
...+..|.||||+|+.. ...+.++.++..+..
T Consensus 184 ------------------------------------~~~~~~g~tpL~~A~~~------------~~~~~v~~Ll~~ga~ 215 (253)
T 1yyh_A 184 ------------------------------------DMQNNREETPLFLAARE------------GSYETAKVLLDHFAN 215 (253)
T ss_dssp ------------------------------------TCCCTTSCCHHHHHHHH------------TCHHHHHHHHHTTCC
T ss_pred ------------------------------------CCcCCCCCCHHHHHHHC------------CCHHHHHHHHHcCCC
Confidence 12466789999999875 333455666666655
Q ss_pred CccchhhhhhhccccccCCCHHHHHHHhCChhHHHHH
Q psy5573 235 PGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELE 271 (338)
Q Consensus 235 ~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll 271 (338)
.. .+|..|+||||+|+++|+.+++.++
T Consensus 216 ~~----------~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 216 RD----------ITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp TT----------CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred cc----------ccccCCCCHHHHHHHcCCHHHHHHH
Confidence 54 7899999999999999999996333
No 29
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=3.1e-32 Score=214.10 Aligned_cols=112 Identities=38% Similarity=0.524 Sum_probs=104.0
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCCh
Q psy5573 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFT 91 (338)
Q Consensus 12 t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~t 91 (338)
++|+.||+.|+.++|++||++|++++.++ ..|+||||+|+..++. +++++|++.|++++.+|.+|+|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d-~~g~t~l~~a~~~~~~------------~~~~~ll~~gad~~~~d~~g~T 72 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASD-SDGRTPLHHAAENGHK------------EVVKLLISKGADVNAKDSDGRT 72 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTTSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCCH------------HHHHHHHhcccchhhhccCCCC
Confidence 47999999999999999999999999998 8999999999999998 5666667788999999999999
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChh
Q psy5573 92 ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 138 (338)
Q Consensus 92 pLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~ 138 (338)
|||+|+.. ++.+++++|+++|++++.++.. |+||||+|+..+...
T Consensus 73 pLh~A~~~-g~~~~v~~Ll~~gadvn~~d~~-G~TpLh~A~~~g~~~ 117 (169)
T 4gpm_A 73 PLHHAAEN-GHKEVVKLLISKGADVNAKDSD-GRTPLHHAAENGHKE 117 (169)
T ss_dssp HHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHH
T ss_pred HHHHHHHc-CCHHHHHHHHHCcCCCCCCCCC-CCCHHHHHHHcCCHH
Confidence 99999998 9999999999999999999988 999999999877653
No 30
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7e-32 Score=236.64 Aligned_cols=243 Identities=25% Similarity=0.227 Sum_probs=178.4
Q ss_pred CCCCCCCCC-----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCH-------
Q psy5573 1 MFSGATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA------- 68 (338)
Q Consensus 1 l~~g~~~n~-----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~------- 68 (338)
|++|+|+|. |+||||+|+..|+.++|++|+++|++++.++ ..+.+|+++++..++..++..++..+.
T Consensus 45 L~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 123 (337)
T 4g8k_A 45 LEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRK-KNGATPFILAAIAGSVKLLKLFLSKGADVNECDF 123 (337)
T ss_dssp HHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCT
T ss_pred HHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhc-cCCCchhHHHHhcccchhhHHhhhccchhhhhcc
Confidence 467999986 8999999999999999999999999887665 555555555555555554444443322
Q ss_pred --------------HHHHHHHHHCCCCCccc----------CCCCChHHHHHHHhCCCHHHHHHHHh-cCCCCCccCCCC
Q psy5573 69 --------------KEIVDLLLDNGADVNFK----------SATGFTALHMACRFHDDDSIVRKLLR-HGAYYNVVDGKT 123 (338)
Q Consensus 69 --------------~~~~~~Ll~~g~~~~~~----------~~~g~tpLh~A~~~~~~~~~v~~Ll~-~g~~~~~~~~~~ 123 (338)
.+++++|+++|++++.. +..|.||||+|+.. |+.+++++|++ .|++++..+..
T Consensus 124 ~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~-g~~~~v~~LL~~~gad~n~~d~~- 201 (337)
T 4g8k_A 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNACDNM- 201 (337)
T ss_dssp TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH-TCHHHHHHHHHHSCCCTTCCCTT-
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC-CCHHHHHHHHhccCCCcCccCCC-
Confidence 46777777777777653 45689999999998 99999999996 69999999988
Q ss_pred CCCHHHHHhhcCC----hhHHHHHhhhhhhhhhhcCCCccHHHHHHHH-HHHHHHHHHhcCCCCCCCcchhHHHhhcCCC
Q psy5573 124 GKTPLLHAGKGAR----EVNTVLLYFINEIFKLMANNDTTILDRLDEM-KSLILEVTKEFGPGDYNNFSLLKVAKNDAGE 198 (338)
Q Consensus 124 g~tpL~~A~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (338)
|.||++.++..+. +.+..+|...+.+++..+..+.|+++.+... .....+.+......+. ...+..|.
T Consensus 202 g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~v-------n~~d~~G~ 274 (337)
T 4g8k_A 202 GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI-------NDTDSDGK 274 (337)
T ss_dssp SCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCT-------TCBCTTSC
T ss_pred CCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcc-------cCcCCCCC
Confidence 9999998773222 3556666666777778888889999876654 3445555554433333 25688999
Q ss_pred CHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhccc
Q psy5573 199 TILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLADA 277 (338)
Q Consensus 199 t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~ 277 (338)
||||+|++. +..+.++++++.+. |.++.||||+|+++|+.+++ .|+++|+++
T Consensus 275 TpL~~A~~~------------g~~~iv~~Ll~~GA---------------d~n~~~~L~~A~~~~~~~iv~~Ll~~GA~~ 327 (337)
T 4g8k_A 275 TALLLAVEL------------KLKKIAELLCKRGA---------------STDCGDLVMTARRNYDHSLVKVLLSHGAKE 327 (337)
T ss_dssp BHHHHHHHT------------TCHHHHHHHHTTSC---------------SSTTCCHHHHHHHTTCHHHHHHHHHTTCCC
T ss_pred CHHHHHHHc------------CCHHHHHHHHHCCC---------------CCCCCCHHHHHHHcCCHHHHHHHHHCcCCC
Confidence 999999876 23344555555444 33567899999999999999 899999998
Q ss_pred CCC
Q psy5573 278 NND 280 (338)
Q Consensus 278 ~~~ 280 (338)
+-.
T Consensus 328 d~~ 330 (337)
T 4g8k_A 328 DFH 330 (337)
T ss_dssp ---
T ss_pred CCC
Confidence 743
No 31
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=9e-32 Score=230.33 Aligned_cols=213 Identities=20% Similarity=0.139 Sum_probs=168.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~g~~------------~~v~~Ll~~ga~~~~~~~~g 125 (285)
T 3d9h_A 59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSPLHEACLGGHL------------SCVKILLKHGAQVNGVTADW 125 (285)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCEEC-TTCCCHHHHHHHTTCH------------HHHHHHHHTTCCSSCCCTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHCCcH------------HHHHHHHHCCCCCCCCCCCC
Confidence 9999999999999999999999999999998 8999999999999998 55666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKS 169 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
.||||+|+.. ++.+++++|+++|++++..+ . |.||||+|+..+...+..++...+...
T Consensus 126 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~-~-g~t~L~~A~~~g~~~~v~~Ll~~g~~~------------------- 183 (285)
T 3d9h_A 126 HTPLFNACVS-GSWDCVNLLLQHGASVQPES-D-LASPIHEAARRGHVECVNSLIAYGGNI------------------- 183 (285)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCSSCSC-T-TSCHHHHHHHHTCHHHHHHHHHTTCCT-------------------
T ss_pred CCHHHHHHHc-CHHHHHHHHHHCCCCCCCCC-C-CCCHHHHHHHcCCHHHHHHHHHCCCCC-------------------
Confidence 9999999998 99999999999999987654 4 999999999877754433333222211
Q ss_pred HHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhcccc
Q psy5573 170 LILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKN 249 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (338)
...+..|.||||+|+.. ...+.++.++..+... ..+
T Consensus 184 ---------------------~~~d~~g~t~L~~A~~~------------~~~~~v~~Ll~~ga~~-----------~~~ 219 (285)
T 3d9h_A 184 ---------------------DHKISHLGTPLYLACEN------------QQRACVKKLLESGADV-----------NQG 219 (285)
T ss_dssp ---------------------TCCBTTTBCHHHHHHHT------------TCHHHHHHHHHTTCCT-----------TCC
T ss_pred ---------------------CCcCCCCCCHHHHHHHc------------CcHHHHHHHHHCCCCC-----------CCC
Confidence 12456788889888765 2334455566554443 247
Q ss_pred ccCCCHHHHHHHhCChhHH-HHHHhhcccC----CCCCCC----chHHHHHHHHHc-CCCCCC
Q psy5573 250 DAGETILDIAKKRGFPLLE-ELEKKLADAN----NDTTIL----DRLDEMKSLILE-GTKEFG 302 (338)
Q Consensus 250 ~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~----~~~~~l----~~~~~v~~Ll~~-g~~~~~ 302 (338)
..|.||||+|+..|+.+++ .|+++++|.+ .|.|++ ++.+++++|+++ ++ ++.
T Consensus 220 ~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~Ll~~~~a-~l~ 281 (285)
T 3d9h_A 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGA-SLP 281 (285)
T ss_dssp BTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTSHHHHHHHHHC------
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCccHHHHHHHHhhcc-CCC
Confidence 7899999999999999988 8888888865 678888 788999999987 55 443
No 32
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=6.1e-32 Score=230.84 Aligned_cols=229 Identities=22% Similarity=0.162 Sum_probs=157.0
Q ss_pred CccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCC---CcccCCCCChHHHHHHHhCCCHHHHHHHHhcC
Q psy5573 37 NEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD---VNFKSATGFTALHMACRFHDDDSIVRKLLRHG 113 (338)
Q Consensus 37 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~---~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g 113 (338)
+.++ ..|+||||+|+..|+.+++++|+ +.|++ ++.++..|+||||+|+.. |+.+++++|+++|
T Consensus 3 ~~~d-~~g~t~L~~A~~~g~~~~v~~Ll------------~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g 68 (282)
T 1oy3_D 3 GYVT-EDGDTALHLAVIHQHEPFLDFLL------------GFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAG 68 (282)
T ss_dssp CCCC-TTCCCHHHHHHHTTCHHHHHHHH------------HHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTT
T ss_pred CccC-CCCCcHHHHHHHcCCHHHHHHHH------------hcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcC
Confidence 4556 89999999999999985555554 44556 788999999999999998 9999999999999
Q ss_pred CCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHh
Q psy5573 114 AYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAK 193 (338)
Q Consensus 114 ~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (338)
++++..+.. |.||||+|+..+...+..++...+........ ...+.. . ....
T Consensus 69 a~~~~~~~~-g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~--~~~~~~---------------~----------~~~~ 120 (282)
T 1oy3_D 69 AGVLVAERG-GHTALHLACRVRAHTCACVLLQPRPSHPRDAS--DTYLTQ---------------S----------QDCT 120 (282)
T ss_dssp CCSSCCCTT-SCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------
T ss_pred CCCCCCCCC-CCCHHHHHHHcCCcchhHhhhccCCCCchhhH--HHHhhc---------------c----------cccC
Confidence 999999988 99999999987775444444433322111100 000000 0 0011
Q ss_pred hcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHH
Q psy5573 194 NDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEK 272 (338)
Q Consensus 194 ~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~ 272 (338)
...+.++++.+......... ... .... . .+.+.++..|.||||+|+..|+.+++ +|++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~--~~~---~~~~------~----------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 179 (282)
T 1oy3_D 121 PDTSHAPAAVDSQPNPENEE--EPR---DEDW------R----------LQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179 (282)
T ss_dssp ----------------------------CCCG------G----------GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cchhcchhhhccccccchhh--hhh---hhhh------h----------hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 22334444444322111000 000 0000 0 11226788999999999999999998 8999
Q ss_pred hhcccC-----CCCCCC------chHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchhhhhh
Q psy5573 273 KLADAN-----NDTTIL------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILGPTMI 329 (338)
Q Consensus 273 ~~~d~~-----~~~~~l------~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~~~~~ 329 (338)
++++.+ .|.|+| |+.++|++|+++|+ +++.+|..|+||||+|+..++.+++..++-
T Consensus 180 ~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga-d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 246 (282)
T 1oy3_D 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA-DPTARMYGGRTPLGSALLRPNPILARLLRA 246 (282)
T ss_dssp HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC-CTTCCCTTSCCHHHHHHTSSCHHHHHHHHH
T ss_pred cCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC-CCcccccCCCCHHHHHHHcCCcHHHHHHHH
Confidence 999876 277888 99999999999999 999999999999999999999998877764
No 33
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-32 Score=242.75 Aligned_cols=215 Identities=18% Similarity=0.167 Sum_probs=171.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHH--------hcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLL--------RTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD 81 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll--------~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~ 81 (338)
|+||||+|+..|+.+++++|+ +.|++++.++ ..|.||||+|+..|+. +++++|+++|++
T Consensus 125 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d-~~g~TpL~~A~~~g~~------------~iv~~Ll~~ga~ 191 (373)
T 2fo1_E 125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMD-CDENTPLMLAVLARRR------------RLVAYLMKAGAD 191 (373)
T ss_dssp CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCHHHHHHHcChH------------HHHHHHHHCCCC
Confidence 999999999999988877776 7999999998 8999999999999998 556666677889
Q ss_pred CcccCCCCChHHHHHHHhCCCHHHHHHHHhcC---CCCCccCCCCCCCHHHHHhhcC---ChhHHHHHhhhhhhhhh---
Q psy5573 82 VNFKSATGFTALHMACRFHDDDSIVRKLLRHG---AYYNVVDGKTGKTPLLHAGKGA---REVNTVLLYFINEIFKL--- 152 (338)
Q Consensus 82 ~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g---~~~~~~~~~~g~tpL~~A~~~~---~~~~~~ll~~~~~~~~~--- 152 (338)
++.++..|.||||+|+.. ++.+++++|++++ ++++..+.. |.||||+|+..+ ...+..+|...+...+.
T Consensus 192 ~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~d~~-g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 269 (373)
T 2fo1_E 192 PTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEELDRN-GMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269 (373)
T ss_dssp SCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCCCTT-SCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred CcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhcCCC-CCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence 999999999999999998 9999999999988 799999988 999999999765 44444444444444332
Q ss_pred -----hcCCCccHHHHHHH-HHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchh
Q psy5573 153 -----MANNDTTILDRLDE-MKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIK 226 (338)
Q Consensus 153 -----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (338)
.+..+.++++.+.. ....+.+++...+..+.+ ..+..|.||||+|+.. +..+.++
T Consensus 270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n-------~~d~~g~TpL~~A~~~------------g~~~iv~ 330 (373)
T 2fo1_E 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-------KQDEDGKTPIMLAAQE------------GRIEVVM 330 (373)
T ss_dssp GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT-------CCCTTCCCHHHHHHHH------------TCHHHHH
T ss_pred cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc-------CcCCCCCCHHHHHHHc------------CCHHHHH
Confidence 34577888887654 345566777765533332 4678899999999876 3345566
Q ss_pred HHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHH
Q psy5573 227 LELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE 268 (338)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~ 268 (338)
.++..+.... .+|..|+||||+|+.+|+.+++
T Consensus 331 ~Ll~~gad~~----------~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 331 YLIQQGASVE----------AVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp HHHHTTCCSS----------CCCSSSCCHHHHHHHTTCHHHH
T ss_pred HHHHcCCCcc----------CCCCCCCCHHHHHHHcCCHHHH
Confidence 6666665554 7899999999999999999993
No 34
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.98 E-value=1.1e-32 Score=232.36 Aligned_cols=209 Identities=19% Similarity=0.163 Sum_probs=152.8
Q ss_pred CCcHHHHHHHcCCHH----HHHHHHhcCCCCCc----cccCCCCcHHHHHHHc---CCHHHHHHHHHcCHHHH-HHHHHH
Q psy5573 10 ELTPLCAAVWDNNIR----LVEYLLRTGHDVNE----KMKLDGRTALFVAVHF---NHRHIAALLIHHGAKEI-VDLLLD 77 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~----~v~~Ll~~g~~~~~----~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~-~~~Ll~ 77 (338)
|+||||.|+..|+.+ ++++|+++|++++. ++ ..|+||||+|+.. |+.+++++|+++|...- ...++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d-~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEG-STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBT-TTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCC-CCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 789999999999997 66777789999998 66 8999999999999 99977777776654100 000000
Q ss_pred CCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCC------------CCCHHHHHhhcCChhHHHHHhh
Q psy5573 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKT------------GKTPLLHAGKGAREVNTVLLYF 145 (338)
Q Consensus 78 ~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~------------g~tpL~~A~~~~~~~~~~ll~~ 145 (338)
.....+|..|.||||+|+.. ++.+++++|+++|++++..+... |.||||+|+..+...+..+|..
T Consensus 81 --~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 81 --AQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp --CCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred --cccccccccCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 11123457899999999998 99999999999999999988642 7777777776555322222211
Q ss_pred hhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccch
Q psy5573 146 INEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSI 225 (338)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
.. .
T Consensus 158 ~~--------------------------------~--------------------------------------------- 160 (256)
T 2etb_A 158 NP--------------------------------H--------------------------------------------- 160 (256)
T ss_dssp CS--------------------------------S---------------------------------------------
T ss_pred cc--------------------------------c---------------------------------------------
Confidence 00 0
Q ss_pred hHHHHhhcCCccchhhhhhhccccccCCCHHHHHHH--hCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCC--
Q psy5573 226 KLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKK--RGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEF-- 301 (338)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~--~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~-- 301 (338)
.+... +.+|..|+||||+|+. .++.+...++ .+++++|+++|+ ++
T Consensus 161 -----~ga~~----------n~~d~~g~TpLh~A~~~~~~~~~~~~~~---------------~~iv~~Ll~~ga-~~~~ 209 (256)
T 2etb_A 161 -----QPASL----------EATDSLGNTVLHALVMIADNSPENSALV---------------IHMYDGLLQMGA-RLCP 209 (256)
T ss_dssp -----CCCCT----------TCCCTTSCCHHHHHHHHCCSCHHHHHHH---------------HHHHHHHHHHHH-HHST
T ss_pred -----cCCCc----------CccCCCCCCHHHHHHHcccCCchhhHHH---------------HHHHHHHHHcCC-Cccc
Confidence 11111 1567899999999999 5666521111 235999999999 78
Q ss_pred -----CCCCCCCCcHHHHHHHhcCccchhhhhhh
Q psy5573 302 -----GPGDYNNFSLLKVAKNDAGETILGPTMIQ 330 (338)
Q Consensus 302 -----~~~d~~g~T~Lh~A~~~~~~~i~~~~~~~ 330 (338)
+.+|..|+||||+|+..++.+++..++-+
T Consensus 210 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 243 (256)
T 2etb_A 210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQR 243 (256)
T ss_dssp TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence 89999999999999999999998777654
No 35
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=4.5e-33 Score=231.86 Aligned_cols=211 Identities=19% Similarity=0.113 Sum_probs=153.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCC----CCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCccc
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGH----DVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFK 85 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~----~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~ 85 (338)
|.||||+|+..|+.+++++|++.+. +++.++ ..|.||||+|+..|+. +++++|++.|++++.+
T Consensus 8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~ 74 (236)
T 1ikn_D 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQN-NLQQTPLHLAVITNQP------------EIAEALLGAGCDPELR 74 (236)
T ss_dssp CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCC-TTCCCHHHHHHHTTCH------------HHHHCCCSCCCCSCCC
T ss_pred CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCCc
Confidence 9999999999999999999998765 688888 8999999999999998 5666666778899999
Q ss_pred CCCCChHHHHHHHhCCCHHHHHHHHhcCCC------CCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCcc
Q psy5573 86 SATGFTALHMACRFHDDDSIVRKLLRHGAY------YNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTT 159 (338)
Q Consensus 86 ~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~------~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~ 159 (338)
+..|.||||+|+.. ++.+++++|+++|++ ++..+.. |.||||+|+..+...+..+|...+..++
T Consensus 75 ~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 144 (236)
T 1ikn_D 75 DFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKATNYN-GHTCLHLASIHGYLGIVELLVSLGADVN-------- 144 (236)
T ss_dssp CTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCCCTT-CCCHHHHHHHTTCHHHHHHHHHHTCCTT--------
T ss_pred CCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhccCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCC--------
Confidence 99999999999998 999999999999876 3555656 9999999998777543333332221110
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhc-CCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccc
Q psy5573 160 ILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKND-AGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDY 238 (338)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (338)
..+. .|.||||+|+.. ...+.++.++..+....
T Consensus 145 --------------------------------~~~~~~g~tpL~~A~~~------------~~~~~v~~Ll~~ga~~~-- 178 (236)
T 1ikn_D 145 --------------------------------AQEPCNGRTALHLAVDL------------QNPDLVSLLLKCGADVN-- 178 (236)
T ss_dssp --------------------------------CCCTTTCCCHHHHHHHT------------TCHHHHHHHHTTTCCSC--
T ss_pred --------------------------------CCCCCCCCCHHHHHHHc------------CCHHHHHHHHHcCCCCC--
Confidence 1233 567777777654 22334444554444433
Q ss_pred hhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCC-CCCCCCCCcHHHHHHH
Q psy5573 239 NNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEF-GPGDYNNFSLLKVAKN 317 (338)
Q Consensus 239 ~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~-~~~d~~g~T~Lh~A~~ 317 (338)
.+|..|+||||+|+..|+.++ +++|+++|++.. ..++..|.||.+.+..
T Consensus 179 --------~~~~~g~tpl~~A~~~~~~~~----------------------~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 179 --------RVTYQGYSPYQLTWGRPSTRI----------------------QQQLGQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp --------CCCTTCCCGGGGCTTSSCHHH----------------------HHHHHTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred --------cccCCCCCHHHHHHccCchHH----------------------HHHHHHcchhhhhcCCccchHHHHhhhcc
Confidence 567777777777777777777 888888888322 3678888888776655
Q ss_pred hc
Q psy5573 318 DA 319 (338)
Q Consensus 318 ~~ 319 (338)
..
T Consensus 229 ~~ 230 (236)
T 1ikn_D 229 FT 230 (236)
T ss_dssp --
T ss_pred cc
Confidence 43
No 36
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=6.3e-31 Score=218.93 Aligned_cols=197 Identities=27% Similarity=0.329 Sum_probs=157.4
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLD 77 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~ 77 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++ |++
T Consensus 32 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~~~~~~------------Ll~ 98 (237)
T 3b7b_A 32 QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQY------------LLS 98 (237)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCC-TTSCCHHHHHHHTTCHHHHHH------------HHT
T ss_pred HcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHH------------HHh
Confidence 57888888 9999999999999999999999999999988 899999999999999855555 455
Q ss_pred CC-CCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCC
Q psy5573 78 NG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANN 156 (338)
Q Consensus 78 ~g-~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~ 156 (338)
.| .+++.++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++...+.+.
T Consensus 99 ~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~~~~Ll~~g~~~------ 170 (237)
T 3b7b_A 99 NGQMDVNCQDDGGWTPMIWATEY-KHVDLVKLLLSKGSDINIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDL------ 170 (237)
T ss_dssp TTCCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHCCHHHHHHHHTTTCCT------
T ss_pred CCCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCccCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCC------
Confidence 55 78999999999999999998 9999999999999999999988 999999999777654333333222111
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCc
Q psy5573 157 DTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPG 236 (338)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (338)
...+..|.||||+|++. ...+.++.++..+....
T Consensus 171 ----------------------------------~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~gad~~ 204 (237)
T 3b7b_A 171 ----------------------------------HAVNIHGDSPLHIAARE------------NRYDCVVLFLSRDSDVT 204 (237)
T ss_dssp ----------------------------------TCCCTTCCCHHHHHHHT------------TCHHHHHHHHTTTCCTT
T ss_pred ----------------------------------CCcCCCCCCHHHHHHHh------------CCHhHHHHHHHcCCCCC
Confidence 12456789999999865 23344555555555443
Q ss_pred cchhhhhhhccccccCCCHHHHHHHhCChhHH-HHHHhhc
Q psy5573 237 DYNNFSLLKVTKNDAGETILDIAKKRGFPLLE-ELEKKLA 275 (338)
Q Consensus 237 ~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~ 275 (338)
.+|.+|+||||+|+.+|+.+.+ .+++...
T Consensus 205 ----------~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 205 ----------LKNKEGETPLQCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp ----------CCCTTSCCHHHHSCTTCHHHHHHHHHHHHH
T ss_pred ----------ccCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 7799999999999999997655 5555443
No 37
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=6.8e-31 Score=217.84 Aligned_cols=189 Identities=27% Similarity=0.262 Sum_probs=153.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|+++|++++.++..|
T Consensus 40 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~g 106 (231)
T 3aji_A 40 SRTALHWACSAGHTEIVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXD------------EIVKALLVKGAHVNAVNQNG 106 (231)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred CCCHHHHHHHcCcHHHHHHHHHhCCCCCCcC-CCCCCHHHHHHHcCHH------------HHHHHHHHcCCCCCCCCCCC
Confidence 9999999999999999999999999999998 8999999999999998 55566667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKS 169 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++...+.+.
T Consensus 107 ~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~------------------- 165 (231)
T 3aji_A 107 CTPLHYAASK-NRHEIAVMLLEGGANPDAKDHY-DATAMHRAAAKGNLKMVHILLFYKAST------------------- 165 (231)
T ss_dssp CCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCS-------------------
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCc-------------------
Confidence 9999999998 9999999999999999999988 999999999777643333332222111
Q ss_pred HHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhcccc
Q psy5573 170 LILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKN 249 (338)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (338)
...+..|.||||+|+.. ...+.++.++..+.... .+|
T Consensus 166 ---------------------~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~ga~~~----------~~~ 202 (231)
T 3aji_A 166 ---------------------NIQDTEGNTPLHLACDE------------ERVEEAKFLVTQGASIY----------IEN 202 (231)
T ss_dssp ---------------------CCCCTTSCCHHHHHHHT------------TCHHHHHHHHHTTCCSC----------CCC
T ss_pred ---------------------cccCCCCCCHHHHHHHC------------CCHHHHHHHHHCCCCCC----------CCC
Confidence 12456789999999865 33445666666665554 778
Q ss_pred ccCCCHHHHHHHhCChhHH-HHHHhhc
Q psy5573 250 DAGETILDIAKKRGFPLLE-ELEKKLA 275 (338)
Q Consensus 250 ~~g~TpLh~A~~~g~~~i~-~ll~~~~ 275 (338)
..|.||||+|++.++.+++ .|+++++
T Consensus 203 ~~g~t~l~~A~~~~~~~i~~lL~~~~a 229 (231)
T 3aji_A 203 KEEKTPLQVAKGGLGLILKRLAEGEEA 229 (231)
T ss_dssp TTSCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHhhHHHHHHHHHccccc
Confidence 9999999999999999986 4444443
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=3e-30 Score=214.88 Aligned_cols=191 Identities=27% Similarity=0.300 Sum_probs=155.0
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLD 77 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~ 77 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|+. +++++|++
T Consensus 30 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~------------~~v~~Ll~ 97 (240)
T 3eu9_A 30 EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHL------------SMVVQLMK 97 (240)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCH------------HHHHHHHH
T ss_pred HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCH------------HHHHHHHH
Confidence 57888887 999999999999999999999999999988766799999999999998 55666667
Q ss_pred CCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCC-hhHHHHHhhhhhhhhhhcCC
Q psy5573 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAR-EVNTVLLYFINEIFKLMANN 156 (338)
Q Consensus 78 ~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~-~~~~~ll~~~~~~~~~~~~~ 156 (338)
.|++++.++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+. ..+..++...+...+
T Consensus 98 ~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~L~~~~~~~~----- 170 (240)
T 3eu9_A 98 YGADPSLIDGEGCSCIHLAAQF-GHTSIVAYLIAKGQDVDMMDQN-GMTPLMWAAYRTHSVDPTRLLLTFNVSVN----- 170 (240)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHCCSSTTHHHHHHTTCCTT-----
T ss_pred cCCCCcccCCCCCCHHHHHHHc-CHHHHHHHHHhcCCCccccCCC-CCcHHHHHHHhCChHHHHHHHHhcCCCcc-----
Confidence 7889999999999999999998 9999999999999999999988 9999999994443 433333333222111
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhh-cCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCC
Q psy5573 157 DTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKN-DAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGP 235 (338)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (338)
..+ ..|.||||+|+.. ...+.++.++..+...
T Consensus 171 -----------------------------------~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~g~~~ 203 (240)
T 3eu9_A 171 -----------------------------------LGDKYHKNTALHWAVLA------------GNTTVISLLLEAGANV 203 (240)
T ss_dssp -----------------------------------CCCTTTCCCHHHHHHHH------------TCHHHHHHHHHHTCCT
T ss_pred -----------------------------------hhhccCCCcHHHHHHHc------------CCHHHHHHHHHcCCCC
Confidence 122 2678999999876 3334566666666555
Q ss_pred ccchhhhhhhccccccCCCHHHHHHHhCChhHH
Q psy5573 236 GDYNNFSLLKVTKNDAGETILDIAKKRGFPLLE 268 (338)
Q Consensus 236 ~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~ 268 (338)
. .+|..|+||||+|++.|+.+++
T Consensus 204 ~----------~~~~~g~t~l~~A~~~~~~~~v 226 (240)
T 3eu9_A 204 D----------AQNIKGESALDLAKQRKNVWMI 226 (240)
T ss_dssp T----------CBCTTSCBHHHHHHHTTCHHHH
T ss_pred C----------CcCCCCCCHHHHHHHcCcHHHH
Confidence 4 7789999999999999999994
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=3e-31 Score=227.01 Aligned_cols=219 Identities=18% Similarity=0.122 Sum_probs=157.0
Q ss_pred cCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHh
Q psy5573 20 DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF 99 (338)
Q Consensus 20 ~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~ 99 (338)
..+.+.+..|+..+ +++.++ ..|.||||+|+..|+. +++++|++.|++++.+ +|+||||+|+..
T Consensus 9 ~~~~~~v~~lL~~~-~~~~~d-~~g~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~ 72 (285)
T 3kea_A 9 TWKSKQLKSFLSSK-DTFKAD-VHGHSASYYAIADNNV------------RLVCTLLNAGALKNLL--ENEFPLHQAATL 72 (285)
T ss_dssp GCCHHHHHHHHHST-TTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTGGGSCC--TTCCHHHHHTTS
T ss_pred hcCHHHHHHHHHhC-CCCccC-CCCCCHHHHHHHcCCH------------HHHHHHHhCCCCCCCC--CCCCHHHHHHHc
Confidence 34444444455444 577787 8999999999999998 5555556667788877 499999999998
Q ss_pred CCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcC
Q psy5573 100 HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFG 179 (338)
Q Consensus 100 ~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (338)
++.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.+++
T Consensus 73 -g~~~~v~~Ll~~ga~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~---------------------------- 122 (285)
T 3kea_A 73 -EDTKIVKILLFSGLDDSQFDDK-GNTALYYAVDSGNMQTVKLFVKKNWRLM---------------------------- 122 (285)
T ss_dssp -SSCHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHCGGGG----------------------------
T ss_pred -CCHHHHHHHHHCCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHhcCCCCC----------------------------
Confidence 9999999999999999999987 9999999998887544444433333221
Q ss_pred CCCCCCcchhHHHhhcCC-CCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccccc-cCCCHHH
Q psy5573 180 PGDYNNFSLLKVAKNDAG-ETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKND-AGETILD 257 (338)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~-~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~TpLh 257 (338)
..+..| .||||+|+..+ ..+.++.++..+... .+. .|.||||
T Consensus 123 ------------~~~~~g~~t~L~~A~~~~------------~~~~v~~Ll~~g~~~------------~~~~~g~t~L~ 166 (285)
T 3kea_A 123 ------------FYGKTGWKTSFYHAVMLN------------DVSIVSYFLSEIPST------------FDLAILLSCIH 166 (285)
T ss_dssp ------------GCSSSGGGSHHHHHHHTT------------CHHHHHHHHTTSCTT------------CCCSTHHHHHH
T ss_pred ------------ccCCCCCCCHHHHHHHcC------------CHHHHHHHHhCCCcc------------ccccCCccHHH
Confidence 234455 68888887652 223344444433322 222 8899999
Q ss_pred HHHHhCChhHH-HHHHhhcccC----CCCCC-C------chHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchh
Q psy5573 258 IAKKRGFPLLE-ELEKKLADAN----NDTTI-L------DRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILG 325 (338)
Q Consensus 258 ~A~~~g~~~i~-~ll~~~~d~~----~~~~~-l------~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~ 325 (338)
+|+..|+.+++ +|+.++++.+ .|.|+ | ++.+++++|+++|+ +++.+|. .|+..++.+++.
T Consensus 167 ~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga-d~~~~~~-------~a~~~~~~~iv~ 238 (285)
T 3kea_A 167 ITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-NIYSANL-------ENVLLDDAEIAK 238 (285)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB-CSTTTTG-------GGGTTTCHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC-CCCCCCh-------hhhhcCCHHHHH
Confidence 99999999997 7777777766 45554 5 78888888888888 7777773 445555666665
Q ss_pred hhh
Q psy5573 326 PTM 328 (338)
Q Consensus 326 ~~~ 328 (338)
.++
T Consensus 239 ~Ll 241 (285)
T 3kea_A 239 MII 241 (285)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 40
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.4e-31 Score=227.80 Aligned_cols=231 Identities=20% Similarity=0.163 Sum_probs=152.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHh----cCCCCCc---cccCCCCcHHHHHHHc---CCHHHHHHHHHcCHH-HHHHHHHHC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLR----TGHDVNE---KMKLDGRTALFVAVHF---NHRHIAALLIHHGAK-EIVDLLLDN 78 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~----~g~~~~~---~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~-~~~~~Ll~~ 78 (338)
|.||||+|+..|+.++|+.|++ .+.+++. ..+..|+||||+|+.. |+.+++++|+++|+. ..++.++.
T Consensus 13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~- 91 (273)
T 2pnn_A 13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN- 91 (273)
T ss_dssp CHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT-
T ss_pred cchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh-
Confidence 9999999999999999998886 5666652 2237899999999987 999999999888651 12223332
Q ss_pred CCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCC--------------CCCCCHHHHHhhcCCh-hHHHHH
Q psy5573 79 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG--------------KTGKTPLLHAGKGARE-VNTVLL 143 (338)
Q Consensus 79 g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~--------------~~g~tpL~~A~~~~~~-~~~~ll 143 (338)
..+..+|..|.||||+|+.. ++.+++++|+++|++++..+. . |.||||+|+..+.. .++.|+
T Consensus 92 -~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 92 -ASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYF-GELPLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp -CCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCS-CBSHHHHHHHTTCHHHHHHHH
T ss_pred -cccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCccccccccccccccccccC-CCCHHHHHHHcCCHHHHHHHH
Confidence 23344678999999999998 999999999999999999987 5 99999999987775 444444
Q ss_pred hh--hhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhcccc
Q psy5573 144 YF--INEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDE 221 (338)
Q Consensus 144 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~ 221 (338)
.. .+.+++ ..+..|+||||+|+..+....... . ..
T Consensus 169 ~~~~~gad~~----------------------------------------~~d~~g~tpLh~A~~~~~~~~~~~-~--~~ 205 (273)
T 2pnn_A 169 QNSWQPADIS----------------------------------------ARDSVGNTVLHALVEVADNTVDNT-K--FV 205 (273)
T ss_dssp HCSSCCCCTT----------------------------------------CCCTTSCCHHHHHHHHCCSCHHHH-H--HH
T ss_pred hcccCCCCce----------------------------------------eeCCCCCcHHHHHHHccCcchhHH-H--HH
Confidence 31 222211 246678888888887533211100 0 00
Q ss_pred ccchhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCC
Q psy5573 222 MKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEF 301 (338)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~ 301 (338)
.+.++.++..+...... .-....+|..|+||||+|++.|+.++ +++|+++|+.+.
T Consensus 206 ~~~v~~Ll~~ga~~n~~---~~~~~~~d~~g~TpL~~A~~~g~~~i----------------------v~~Ll~~ga~dp 260 (273)
T 2pnn_A 206 TSMYNEILILGAKLHPT---LKLEEITNRKGLTPLALAASSGKIGV----------------------LAYILQREIHEP 260 (273)
T ss_dssp HHHHHHHHHHHHHHCTT---CCGGGCCCTTSCCHHHHHHHTTCHHH----------------------HHHHHHHHTC--
T ss_pred HHHHHHHHHhhhhcccc---cccccccCCCCCCHHHHHHHhChHHH----------------------HHHHHHCCCCCc
Confidence 12233444433322100 00012478999999999999999999 777777777666
Q ss_pred CCCCCCCCcHH
Q psy5573 302 GPGDYNNFSLL 312 (338)
Q Consensus 302 ~~~d~~g~T~L 312 (338)
......+++|-
T Consensus 261 ~~~~~~~~~~~ 271 (273)
T 2pnn_A 261 ECRHAAAHHHH 271 (273)
T ss_dssp -----------
T ss_pred hhhhhhhhhcc
Confidence 66666666554
No 41
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.3e-30 Score=204.85 Aligned_cols=135 Identities=37% Similarity=0.472 Sum_probs=119.8
Q ss_pred CCCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Q psy5573 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76 (338)
Q Consensus 1 l~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll 76 (338)
|++|+|+|. |+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|+
T Consensus 24 l~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d-~~g~TpLh~A~~~g~~------------~~v~~Ll 90 (169)
T 4gpm_A 24 IENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD-SDGRTPLHHAAENGHK------------EVVKLLI 90 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHH
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhc-cCCCCHHHHHHHcCCH------------HHHHHHH
Confidence 468999998 9999999999999999999999999999998 8999999999999998 5666667
Q ss_pred HCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhh
Q psy5573 77 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIF 150 (338)
Q Consensus 77 ~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~ 150 (338)
++|+++|.+|.+|+||||+|+.. |+.+++++|+++|++++.++.. |.||||+|+..+...+..+|...+..+
T Consensus 91 ~~gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 91 SKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNTSDSD-GRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HCcCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 77899999999999999999998 9999999999999999999988 999999999888866656655555443
No 42
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=6.6e-31 Score=219.25 Aligned_cols=194 Identities=24% Similarity=0.250 Sum_probs=156.0
Q ss_pred CCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHC
Q psy5573 3 SGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDN 78 (338)
Q Consensus 3 ~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~ 78 (338)
.|+++|. |.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++++. ..
T Consensus 35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~~~~--------~~ 105 (241)
T 1k1a_A 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALD-RHGQTAAHLACEHRSPTCLRALLDSAA--------PG 105 (241)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHHSC--------TT
T ss_pred cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccC-CCCCCHHHHHHHcCCHHHHHHHHHcCC--------Cc
Confidence 5788887 9999999999999999999999999999998 899999999999999966666655433 12
Q ss_pred CCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCc
Q psy5573 79 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDT 158 (338)
Q Consensus 79 g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~ 158 (338)
+.+++.++..|.||||+|+.. ++.+++++|+++|++++..+...|.||||+|+..+...+..++...+.+.
T Consensus 106 ~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------- 176 (241)
T 1k1a_A 106 TLDLEARNYDGLTALHVAVNT-ECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-------- 176 (241)
T ss_dssp SCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--------
T ss_pred cccccccCcCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC--------
Confidence 248899999999999999998 99999999999999999998444999999999877754433333222211
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccc
Q psy5573 159 TILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDY 238 (338)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (338)
...+..|.||||+|+.. ...+.++.++..+....
T Consensus 177 --------------------------------~~~~~~g~t~L~~A~~~------------~~~~~v~~Ll~~ga~~~-- 210 (241)
T 1k1a_A 177 --------------------------------NAQMYSGSSALHSASGR------------GLLPLVRTLVRSGADSS-- 210 (241)
T ss_dssp --------------------------------TCBCTTSCBHHHHHHHH------------TCHHHHHHHHHTTCCTT--
T ss_pred --------------------------------CCcCCCCCCHHHHHHHc------------CCHHHHHHHHhcCCCCC--
Confidence 12466789999999876 33345566666555544
Q ss_pred hhhhhhhccccccCCCHHHHHHHhCChhHH
Q psy5573 239 NNFSLLKVTKNDAGETILDIAKKRGFPLLE 268 (338)
Q Consensus 239 ~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~ 268 (338)
.+|..|+||||+|+..|+.+++
T Consensus 211 --------~~~~~g~tpl~~A~~~~~~~i~ 232 (241)
T 1k1a_A 211 --------LKNCHNDTPLMVARSRRVIDIL 232 (241)
T ss_dssp --------CCCTTSCCTTTTCSSHHHHHHH
T ss_pred --------CcCCCCCCHHHHHHhcCcHHHH
Confidence 7889999999999999999984
No 43
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.8e-31 Score=225.42 Aligned_cols=210 Identities=17% Similarity=0.090 Sum_probs=156.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHH----hcCCCCCccc---cCCCCcHHHHHH---HcCCHHHHHHHHHcCHH-HHHHHHHHC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLL----RTGHDVNEKM---KLDGRTALFVAV---HFNHRHIAALLIHHGAK-EIVDLLLDN 78 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll----~~g~~~~~~~---~~~g~tpLh~A~---~~g~~~~v~~Ll~~~~~-~~~~~Ll~~ 78 (338)
|+|+||.|++.|+.++++.|+ +.|.+++..+ +..|+||||+|+ ..|+.+++++|++.|.. .....++
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~-- 82 (260)
T 3jxi_A 5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFI-- 82 (260)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHH--
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhh--
Confidence 899999999999999555554 5999998765 256999999999 77999999999887651 1111112
Q ss_pred CCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccC--------------CCCCCCHHHHHhhcCChhHHHHHh
Q psy5573 79 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD--------------GKTGKTPLLHAGKGAREVNTVLLY 144 (338)
Q Consensus 79 g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~--------------~~~g~tpL~~A~~~~~~~~~~ll~ 144 (338)
..+++.+|..|+||||+|+.. |+.+++++|+++|++++..+ .. |.||||+|+..+...+..+|.
T Consensus 83 ~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 83 NSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYF-GELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp TCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCS-CSSHHHHHHHTTCHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCccccccccCcccccccccC-CCCHHHHHHHcCCHHHHHHHH
Confidence 255666777999999999998 99999999999999999998 45 889999998776643322221
Q ss_pred hhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccc
Q psy5573 145 FINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKS 224 (338)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~ 224 (338)
.. +.
T Consensus 161 ~~--------------------------------~~-------------------------------------------- 164 (260)
T 3jxi_A 161 EN--------------------------------GH-------------------------------------------- 164 (260)
T ss_dssp HC--------------------------------SS--------------------------------------------
T ss_pred hc--------------------------------cc--------------------------------------------
Confidence 10 00
Q ss_pred hhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhH--HHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCC-
Q psy5573 225 IKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLL--EELEKKLADANNDTTILDRLDEMKSLILEGTKEF- 301 (338)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i--~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~- 301 (338)
.+... +.+|..|+||||+|+..|+... .. ...+++++|+++|+ ++
T Consensus 165 ------~ga~~----------~~~d~~g~TpLh~A~~~~~~~~~~~~---------------~~~~~v~~Ll~~ga-~~~ 212 (260)
T 3jxi_A 165 ------KQADL----------RRQDSRGNTVLHALVAIADNTRENTK---------------FVTKMYDLLLIKCA-KLF 212 (260)
T ss_dssp ------CCCCT----------TCCCTTSCCHHHHHHHHCCSSHHHHH---------------HHHHHHHHHHHHHH-HHC
T ss_pred ------cCCCC----------cccCCCCCcHHHHHHHhccCchhHHH---------------HHHHHHHHHHHhCc-ccc
Confidence 00000 1457889999999998877211 10 01245899999888 77
Q ss_pred ------CCCCCCCCcHHHHHHHhcCccchhhhhhhh
Q psy5573 302 ------GPGDYNNFSLLKVAKNDAGETILGPTMIQL 331 (338)
Q Consensus 302 ------~~~d~~g~T~Lh~A~~~~~~~i~~~~~~~~ 331 (338)
+.+|..|+||||+|+..++.+++..++-+-
T Consensus 213 ~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 213 PDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp TTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 679999999999999999999988776543
No 44
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.2e-32 Score=227.96 Aligned_cols=136 Identities=24% Similarity=0.274 Sum_probs=114.4
Q ss_pred CCCCCCCCC-------CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHH
Q psy5573 1 MFSGATINV-------ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVD 73 (338)
Q Consensus 1 l~~g~~~n~-------G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~ 73 (338)
|++|++++. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. ++++
T Consensus 5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~tpLh~A~~~g~~------------~~v~ 71 (229)
T 2vge_A 5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPN-EEGITALHNAICGANY------------SIVD 71 (229)
T ss_dssp -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCC-TTSCCHHHHHHHTTCH------------HHHH
T ss_pred hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCH------------HHHH
Confidence 467888876 7889999999999999999999999999998 8999999999999998 5666
Q ss_pred HHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH--hhcCChhHHHHHhhhhhhh
Q psy5573 74 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA--GKGAREVNTVLLYFINEIF 150 (338)
Q Consensus 74 ~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A--~~~~~~~~~~ll~~~~~~~ 150 (338)
+|++.|++++.+|..|+||||+|+.. ++.+++++|+++|++++..++..|.||||+| +..+...+..+|...+.+.
T Consensus 72 ~Ll~~ga~~n~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~ 149 (229)
T 2vge_A 72 FLITAGANVNSPDSHGWTPLHCAASC-NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM 149 (229)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc
Confidence 66677899999999999999999998 9999999999999999999754499999999 7777765555554444443
No 45
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=3e-31 Score=220.85 Aligned_cols=197 Identities=21% Similarity=0.195 Sum_probs=153.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCC
Q psy5573 42 LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 121 (338)
Q Consensus 42 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~ 121 (338)
..|.||||+|+..|+.+++++|++.+. ..+++++.++..|.||||+|+.. ++.+++++|+++|++++..+.
T Consensus 6 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~--------~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~ 76 (236)
T 1ikn_D 6 EDGDSFLHLAIIHEEKALTMEVIRQVK--------GDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELRDF 76 (236)
T ss_dssp -CCCCTTHHHHHTTCSSSSSCCCC-------------CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCCCT
T ss_pred CCCCchhHHHHHcCChhHHHHHHHHhh--------ccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCC
Confidence 789999999999999977777665543 34568999999999999999998 999999999999999999998
Q ss_pred CCCCCHHHHHhhcCCh-hHHHHHhhhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCH
Q psy5573 122 KTGKTPLLHAGKGARE-VNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETI 200 (338)
Q Consensus 122 ~~g~tpL~~A~~~~~~-~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~ 200 (338)
. |.||||+|+..+.. .+..|+..... .. ........+..|.||
T Consensus 77 ~-g~t~L~~A~~~~~~~~v~~Ll~~~~~-~~----------------------------------~~~~~~~~~~~g~t~ 120 (236)
T 1ikn_D 77 R-GNTPLHLACEQGCLASVGVLTQSCTT-PH----------------------------------LHSILKATNYNGHTC 120 (236)
T ss_dssp T-CCCHHHHHHHHTCHHHHHHHHHSTTT-TS----------------------------------SSCGGGCCCTTCCCH
T ss_pred C-CCCHHHHHHHcCCHHHHHHHHhcccc-hh----------------------------------HHHHhhccCCCCCCH
Confidence 8 99999999977775 44444433221 00 001112356678999
Q ss_pred HHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccccc-cCCCHHHHHHHhCChhHHHHHHhhcccCC
Q psy5573 201 LDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKND-AGETILDIAKKRGFPLLEELEKKLADANN 279 (338)
Q Consensus 201 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~TpLh~A~~~g~~~i~~ll~~~~d~~~ 279 (338)
||+|+.. +..+.++.++..+.... .++. .|.||||+|+..|+.++
T Consensus 121 L~~A~~~------------~~~~~v~~Ll~~g~~~~----------~~~~~~g~tpL~~A~~~~~~~~------------ 166 (236)
T 1ikn_D 121 LHLASIH------------GYLGIVELLVSLGADVN----------AQEPCNGRTALHLAVDLQNPDL------------ 166 (236)
T ss_dssp HHHHHHT------------TCHHHHHHHHHHTCCTT----------CCCTTTCCCHHHHHHHTTCHHH------------
T ss_pred HHHHHHc------------CCHHHHHHHHHcCCCCC----------CCCCCCCCCHHHHHHHcCCHHH------------
Confidence 9999865 23345556666555543 5666 89999999999999888
Q ss_pred CCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchhhhh
Q psy5573 280 DTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILGPTM 328 (338)
Q Consensus 280 ~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~~~~ 328 (338)
+++|+++|+ +++.+|..|+||||+|+..++.+++..++
T Consensus 167 ----------v~~Ll~~ga-~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 204 (236)
T 1ikn_D 167 ----------VSLLLKCGA-DVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204 (236)
T ss_dssp ----------HHHHHTTTC-CSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred ----------HHHHHHcCC-CCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence 999999999 99999999999999999999988887654
No 46
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=8.3e-30 Score=219.60 Aligned_cols=240 Identities=23% Similarity=0.255 Sum_probs=169.4
Q ss_pred HHHHcCCHHHHHHHHhcCCCCCccc--------cCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCC
Q psy5573 16 AAVWDNNIRLVEYLLRTGHDVNEKM--------KLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSA 87 (338)
Q Consensus 16 ~A~~~g~~~~v~~Ll~~g~~~~~~~--------~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~ 87 (338)
.++..++.+.++.++....++.... +..|.||||+||..|+. +++++|++.|++++.+|.
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~------------~~v~~Ll~~g~~~~~~~~ 71 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT------------EEVLRLLERGADINYANV 71 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCH------------HHHHHHHHHCCCTTCBCT
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCH------------HHHHHHHHcCCCCcccCC
Confidence 4677788888888887655433211 13578999999999998 555556667889999999
Q ss_pred CCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHH
Q psy5573 88 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEM 167 (338)
Q Consensus 88 ~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
.|.||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+......+..+.++++.+...
T Consensus 72 ~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~~~-g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 149 (299)
T 1s70_B 72 DGLTALHQACID-DNVDMVKFLVENGANINQPDNE-GWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEE 149 (299)
T ss_dssp TCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSH
T ss_pred CCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhc
Confidence 999999999998 9999999999999999999988 99999999988876555555555666666667777777654332
Q ss_pred H-HHHHHHHHh-cCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhh
Q psy5573 168 K-SLILEVTKE-FGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLK 245 (338)
Q Consensus 168 ~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (338)
. ..+.+.+.. .+.. . ......+.+++... +...+...... .
T Consensus 150 ~~~~~~~~ll~~~~~~-~-------~~~~~~~~~~~~~~--------------------~~~~l~~~~~~---------~ 192 (299)
T 1s70_B 150 AMEELLQNEVNRQGVD-I-------EAARKEEERIMLRD--------------------ARQWLNSGHIN---------D 192 (299)
T ss_dssp HHHHHHHHHHHHHTCC-H-------HHHHHHHHHHHHHH--------------------HHHHHHHTCCC---------C
T ss_pred chHHHHHHHHhhcCCC-c-------hhhhhhhhhHHHHH--------------------HHHHHhccCcc---------h
Confidence 2 222222211 1111 0 00111111111111 11111111111 1
Q ss_pred ccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhcCccchh
Q psy5573 246 VTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLILEGTKEFGPGDYNNFSLLKVAKNDAGETILG 325 (338)
Q Consensus 246 ~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~~~d~~g~T~Lh~A~~~~~~~i~~ 325 (338)
...+..|.||||+|+..|+.++ +++|+++|+ +++.+|..|+||||+|+..++.+++.
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~----------------------v~~Ll~~g~-d~~~~d~~g~tpL~~A~~~~~~~~v~ 249 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEV----------------------LKLLIQARY-DVNIKDYDGWTPLHAAAHWGKEEACR 249 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHH----------------------HHHHHTTTC-CTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred hhhcCCCCCHHHHHHHCCcHHH----------------------HHHHHHcCC-CCCCcCCCCCcHHHHHHhcCCHHHHH
Confidence 1456789999999999999988 999999999 99999999999999999999998887
Q ss_pred hhhh
Q psy5573 326 PTMI 329 (338)
Q Consensus 326 ~~~~ 329 (338)
.++-
T Consensus 250 ~Ll~ 253 (299)
T 1s70_B 250 ILVE 253 (299)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 47
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.7e-29 Score=199.75 Aligned_cols=113 Identities=29% Similarity=0.314 Sum_probs=101.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC-CCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHD-VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
+.||||.|+..|+.+++++|++.+.+ ++.++ ..|+||||+|+..|+. +++++|++.|++++.++..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~ 68 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPD-ERGFTPLIWASAFGEI------------ETVRFLLEWGADPHILAKE 68 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHHTCCTTCCCTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCchhhccc
Confidence 46899999999999999999999987 67776 8999999999999998 5555566678899999999
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~ 137 (338)
|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+..
T Consensus 69 g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~ 115 (172)
T 3v30_A 69 RESALSLASTG-GYTDIVGLLLERDVDINIYDWN-GGTPLLYAVRGNHV 115 (172)
T ss_dssp CCCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCTT-SCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHC-CCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCH
Confidence 99999999998 9999999999999999999988 99999999977664
No 48
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=3e-30 Score=219.72 Aligned_cols=190 Identities=21% Similarity=0.205 Sum_probs=154.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCC--CCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCC-CCcccC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHD--VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGA-DVNFKS 86 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~--~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~-~~~~~~ 86 (338)
+.+++|.|+..|+.+.++.+++.+.+ ++.++ ..|+||||+|+..|+. +++++|++.|+ +++.++
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d-~~g~T~Lh~A~~~g~~------------~~v~~Ll~~g~~~~~~~~ 142 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIAD-SNGNTALHYSVSHANF------------PVVQQLLDSGVCKVDKQN 142 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTSCCCTTCCC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCC-CCCCCHHHHHHHCCCH------------HHHHHHHHCCCCcCCCCC
Confidence 56788899999999999999887665 77777 8899999999999998 45555556665 899999
Q ss_pred CCCChHHHHHH-----HhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHH
Q psy5573 87 ATGFTALHMAC-----RFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTIL 161 (338)
Q Consensus 87 ~~g~tpLh~A~-----~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 161 (338)
..|.||||+|+ .. ++.+++++|++.|.+.+..+.. |.||||+|+..+...+..+|...+
T Consensus 143 ~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~g-------------- 206 (276)
T 4hbd_A 143 RAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKASQA-GQTALMLAVSHGRVDVVKALLACE-------------- 206 (276)
T ss_dssp TTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHHHTT--------------
T ss_pred CCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHhCC--------------
Confidence 99999999998 55 7889999999999888888877 999999999777643332222111
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhh
Q psy5573 162 DRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNF 241 (338)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (338)
.+.
T Consensus 207 -----------------------------------------------------------------------ad~------ 209 (276)
T 4hbd_A 207 -----------------------------------------------------------------------ADV------ 209 (276)
T ss_dssp -----------------------------------------------------------------------CCT------
T ss_pred -----------------------------------------------------------------------CCC------
Confidence 000
Q ss_pred hhhhccccccCCCHHHHHHHhCChhHHHHHHhhcccCCCCCCCchHHHHHHHHH-cCCCCCCCCCCCCCcHHHHHHHhcC
Q psy5573 242 SLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANNDTTILDRLDEMKSLIL-EGTKEFGPGDYNNFSLLKVAKNDAG 320 (338)
Q Consensus 242 ~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~~~~d~~~~~~~l~~~~~v~~Ll~-~g~~~~~~~d~~g~T~Lh~A~~~~~ 320 (338)
+.+|..|+||||+|+..|+.++ +++|++ .|+ +++.+|..|+||||+|+..++
T Consensus 210 ----n~~d~~G~TpLh~A~~~g~~~i----------------------v~~Ll~~~ga-d~~~~d~~g~TpL~~A~~~g~ 262 (276)
T 4hbd_A 210 ----NVQDDDGSTALMCACEHGHKEI----------------------AGLLLAVPSC-DISLTDRDGSTALMVALDAGQ 262 (276)
T ss_dssp ----TCCCTTSCCHHHHHHHHTCHHH----------------------HHHHHTSTTC-CTTCCCTTSCCHHHHHHHHTC
T ss_pred ----CCCCCCCCCHHHHHHHCCCHHH----------------------HHHHHhcCCC-CCcCcCCCCCCHHHHHHHcCC
Confidence 1457799999999999999988 999998 788 999999999999999999999
Q ss_pred ccchhhhhhhhh
Q psy5573 321 ETILGPTMIQLS 332 (338)
Q Consensus 321 ~~i~~~~~~~~~ 332 (338)
.+++..++-++.
T Consensus 263 ~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 263 SEIASMLYSRMN 274 (276)
T ss_dssp HHHHHHHHHHCC
T ss_pred HHHHHHHHhccC
Confidence 999988876653
No 49
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=2e-29 Score=208.45 Aligned_cols=177 Identities=19% Similarity=0.144 Sum_probs=141.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcC--CCCCc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC--CCCcc
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTG--HDVNE-KMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG--ADVNF 84 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g--~~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g--~~~~~ 84 (338)
|.||||+|+..|+.+++++|+++| .+++. .+ ..|.||||+|+..|+. +++++|++.| ++++.
T Consensus 36 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~~~~Ll~~g~~~~~~~ 102 (228)
T 2dzn_A 36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD-DSGWTPFHIACSVGNL------------EVVKSLYDRPLKPDLNK 102 (228)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCC-TTSCCHHHHHHHHCCH------------HHHHHHHSSSSCCCTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhccccccccccCC-CCCCCHHHHHHHcCCH------------HHHHHHHhCCCCccccc
Confidence 999999999999999999999999 66666 44 8899999999999998 4555555666 88999
Q ss_pred cCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChh-HHHHHhhhhhhhhhhcCCCccHHHH
Q psy5573 85 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV-NTVLLYFINEIFKLMANNDTTILDR 163 (338)
Q Consensus 85 ~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~ 163 (338)
++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+... ++.|+.....+
T Consensus 103 ~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------------- 166 (228)
T 2dzn_A 103 ITNQGVTCLHLAVGK-KWFEVSQFLIENGASVRIKDKF-NQIPLHRAASVGSLKLIELLCGLGKSA-------------- 166 (228)
T ss_dssp CCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHTTCHHHHHHHHTTTCCC--------------
T ss_pred CCcCCCCHHHHHHHc-CCHhHHHHHHHcCCCccccCCC-CCCHHHHHHHcCCHHHHHHHHhcCccc--------------
Confidence 999999999999998 9999999999999999999988 999999999877753 33333322111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHH-HhhcCCccchhhh
Q psy5573 164 LDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLEL-TKAFGPGDYNNFS 242 (338)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 242 (338)
. ...+..|.||||+|+.. ...+.++.++ ..+....
T Consensus 167 -------------------~-------~~~d~~g~t~L~~A~~~------------~~~~~v~~Ll~~~ga~~~------ 202 (228)
T 2dzn_A 167 -------------------V-------NWQDKQGWTPLFHALAE------------GHGDAAVLLVEKYGAEYD------ 202 (228)
T ss_dssp -------------------S-------CCCCTTSCCHHHHHHHT------------TCHHHHHHHHHHHCCCSC------
T ss_pred -------------------c-------cCcCCCCCCHHHHHHHc------------CCHHHHHHHHHhcCCCCC------
Confidence 1 12466889999999865 2334455566 5555554
Q ss_pred hhhccccccCCCHHHHHHHhC
Q psy5573 243 LLKVTKNDAGETILDIAKKRG 263 (338)
Q Consensus 243 ~~~~~~~~~g~TpLh~A~~~g 263 (338)
.+|..|+||||+|++.+
T Consensus 203 ----~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 203 ----LVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp ----CBCTTSCBGGGGCSSTT
T ss_pred ----ccCCCCCcHHHHHHHHH
Confidence 78999999999997654
No 50
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=9.6e-29 Score=205.03 Aligned_cols=120 Identities=27% Similarity=0.351 Sum_probs=106.8
Q ss_pred CCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCC-----CccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHH
Q psy5573 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDV-----NEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDL 74 (338)
Q Consensus 4 g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~-----~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 74 (338)
|+++|. |.||||+|+..|+.+++++|+++|+++ +..+ ..|.||||+|+..|+. +++++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~ 93 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL-YEGQTALHIAVINQNV------------NLVRA 93 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTT-TTTCCHHHHHHHTTCH------------HHHHH
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccC-CCCcCHHHHHHHcCCH------------HHHHH
Confidence 889988 999999999999999999999999887 4455 7899999999999998 55555
Q ss_pred HHHCCCCCcccCC-------------CCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChh
Q psy5573 75 LLDNGADVNFKSA-------------TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 138 (338)
Q Consensus 75 Ll~~g~~~~~~~~-------------~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~ 138 (338)
|+++|++++.++. .|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...
T Consensus 94 Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~d~~-g~t~L~~A~~~~~~~ 168 (232)
T 2rfa_A 94 LLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV-GSEEIVRLLIEHGADIRAQDSL-GNTVLHILILQPNKT 168 (232)
T ss_dssp HHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHTCSCHH
T ss_pred HHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCChH
Confidence 6667778887765 799999999998 9999999999999999999988 999999999877653
No 51
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=3.7e-28 Score=191.08 Aligned_cols=113 Identities=27% Similarity=0.309 Sum_probs=105.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||.|+..|+.+++++|++.|.+++.++ ..|.||||+|+..|+. +++++|++.|++++.++..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~g 69 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTD-EEGFTPLMWAAAHGQI------------AVVEFLLQNGADPQLLGKGR 69 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTTC
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCC-CCCCCHHHHHHHCCCH------------HHHHHHHHcCCCCCCcCCCC
Confidence 7899999999999999999999999999998 8999999999999998 55666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~ 137 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+..
T Consensus 70 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~ 115 (167)
T 3v31_A 70 ESALSLACSK-GYTDIVKMLLDCGVDVNEYDWN-GGTPLLYAVHGNHV 115 (167)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCTT-SCCHHHHHHHTTCH
T ss_pred CcHHHHHHHc-CCHHHHHHHHHCCCCCCcCCCC-CCCHHHHHHHcCCH
Confidence 9999999998 9999999999999999999988 99999999977664
No 52
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.96 E-value=8.3e-28 Score=198.10 Aligned_cols=121 Identities=29% Similarity=0.410 Sum_probs=110.3
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCC-CCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGH-DVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll 76 (338)
++|+++|. |.||||+|+..|+.+++++|+++++ +++..+ ..|.||||+|+..|+. +++++|+
T Consensus 46 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~~~~Ll 112 (223)
T 2f8y_A 46 EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM-HDGTTPLILAARLAVE------------GMLEDLI 112 (223)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCC-TTCCCHHHHHHHHTCH------------HHHHHHH
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC-CCCCcHHHHHHHhCcH------------HHHHHHH
Confidence 57888887 9999999999999999999999987 788777 8999999999999998 5566666
Q ss_pred HCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh
Q psy5573 77 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137 (338)
Q Consensus 77 ~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~ 137 (338)
+.|++++.++..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+..
T Consensus 113 ~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~ 171 (223)
T 2f8y_A 113 NSHADVNAVDDLGKSALHWAAAV-NNVDAAVVLLKNGANKDMQNNR-EETPLFLAAREGSY 171 (223)
T ss_dssp HTTCCTTCBCTTSCBHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHHTCH
T ss_pred HcCCCCcCcCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CcCHHHHHHHcCCH
Confidence 77889999999999999999998 9999999999999999999988 99999999976664
No 53
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=4.9e-28 Score=189.35 Aligned_cols=113 Identities=31% Similarity=0.316 Sum_probs=104.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
..||||.|+..|+.+++++|+++|++++.++ ..|+||||+|+. |+. +++++|++.|++++.++..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~-~~~------------~~v~~Ll~~g~~~~~~~~~g 70 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQN-GFGRTALQVMKL-GNP------------EIARRLLLRGANPDLKDRTG 70 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCC-TTSCCHHHHCCS-SCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccC-ccCccHHHHHHc-CcH------------HHHHHHHHcCCCCCCCCCCC
Confidence 4689999999999999999999999999998 899999999999 998 55666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 138 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~ 138 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...
T Consensus 71 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~ 117 (162)
T 1ihb_A 71 FAVIHDAARA-GFLDTLQTLLEFQADVNIEDNE-GNLPLHLAAKEGHLR 117 (162)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHH
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHH
Confidence 9999999998 9999999999999999999988 999999999877653
No 54
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.1e-28 Score=208.97 Aligned_cols=174 Identities=25% Similarity=0.285 Sum_probs=90.7
Q ss_pred CCcHHHHHHHcCCH-HHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNI-RLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~-~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
|.||||.|+..+.. .+++.|++.|+++|.++ ..|+||||+|+..|+. +++++|++.|++++.++.+
T Consensus 52 ~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d-~~G~TpLh~A~~~g~~------------~~v~~Ll~~~a~~~~~~~~ 118 (269)
T 4b93_B 52 FCHPLCQCPKCAPAQKRLAKVPASGLGVNVTS-QDGSSPLHVAALHGRA------------DLIPLLLKHGANAGARNAD 118 (269)
T ss_dssp -----------------------CCCCTTCCC-TTSCCHHHHHHHTTCT------------THHHHHHHTTCCTTCCCTT
T ss_pred CCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcH------------HHHHHHHhcCCCcCccCCC
Confidence 66777777766554 36667777777777766 6677777777777776 3344444455566666666
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHH-
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEM- 167 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~- 167 (338)
|.||+|+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.+++..+..|.++++.+...
T Consensus 119 g~t~l~~a~~~-~~~~~~~~Ll~~g~~~n~~d~~-g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g 196 (269)
T 4b93_B 119 QAVPLHLACQQ-GHFQVVKCLLDSNAKPNKKDLS-GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEK 196 (269)
T ss_dssp CCCHHHHHHHH-TCHHHHHHHHHTTCCSCCCCTT-CCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred CCCcccccccc-ChHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcC
Confidence 66666666665 6666666666666666666655 66666666655554333333344445555555666666554432
Q ss_pred HHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHH
Q psy5573 168 KSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFE 206 (338)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~ 206 (338)
...+.+++...+.. . ...+..|+||||+|.+
T Consensus 197 ~~~~v~~Ll~~Gad-~-------~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 197 HVFVVELLLLHGAS-V-------QVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp CHHHHHHHHHTTCC-S-------CCCCTTSCCSGGGSCT
T ss_pred CHHHHHHHHHCCCC-C-------CCcCCCCCCHHHHHHh
Confidence 34455555555432 1 1356677777777775
No 55
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.2e-27 Score=194.02 Aligned_cols=119 Identities=24% Similarity=0.225 Sum_probs=107.0
Q ss_pred CCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC
Q psy5573 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79 (338)
Q Consensus 4 g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g 79 (338)
++++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+.+++++|++ ..+
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~~~~~~Ll~-----------~~~ 96 (201)
T 3hra_A 29 TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN-SISDSPYLYAGAQGRTEILAYMLK-----------HAT 96 (201)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCHHHHHHHHH-----------HSC
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHh-----------ccC
Confidence 447777 9999999999999999999999999999998 899999999999999866555543 355
Q ss_pred CCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHhhcCC
Q psy5573 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG-AYYNVVDGKTGKTPLLHAGKGAR 136 (338)
Q Consensus 80 ~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~~~~ 136 (338)
.+++.++..|.||||+|+.. ++.+++++|+++| ++++..+.. |.||||+|+..+.
T Consensus 97 ~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~-g~t~L~~A~~~~~ 152 (201)
T 3hra_A 97 PDLNKHNRYGGNALIPAAEK-GHIDNVKLLLEDGREDIDFQNDF-GYTALIEAVGLRE 152 (201)
T ss_dssp CCTTCCCTTSCCSHHHHHHT-TCHHHHHHHHHHCCCCTTCCCTT-SCCHHHHHHHSSC
T ss_pred cccccccCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCcCCCCCC-CCCHHHHHHHhcc
Confidence 79999999999999999998 9999999999999 899999988 9999999996554
No 56
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=4.7e-28 Score=195.01 Aligned_cols=113 Identities=33% Similarity=0.376 Sum_probs=103.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 35 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~g 101 (192)
T 2rfm_A 35 NRTPLMVACMLGMENAIDKLVENFDKLEDKD-IEGSTALIWAVKNNRL------------GIAEKLLSKGSNVNTKDFSG 101 (192)
T ss_dssp CCCHHHHHHHHTCGGGHHHHHHHHCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHHTCCTTCCCTTS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcccccccc-ccCccHHHHHHHcCCH------------HHHHHHHHCCCCCCCCCCCC
Confidence 9999999999999999999999999999988 8999999999999998 55555566678999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~ 137 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+..
T Consensus 102 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~ 147 (192)
T 2rfm_A 102 KTPLMWSIIF-GYSEMSYFLLEHGANVNDRNLE-GETPLIVASKYGRS 147 (192)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCSSCCCTT-CCCHHHHHHHHTCH
T ss_pred CcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCH
Confidence 9999999998 9999999999999999999988 99999999976664
No 57
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=3.2e-28 Score=205.04 Aligned_cols=121 Identities=25% Similarity=0.258 Sum_probs=104.8
Q ss_pred CCCCCCC--------CCcHHHHHHHc---CCHHHHHHHHhcCCCCCccc----------cCCCCcHHHHHHHcCCHHHHH
Q psy5573 3 SGATINV--------ELTPLCAAVWD---NNIRLVEYLLRTGHDVNEKM----------KLDGRTALFVAVHFNHRHIAA 61 (338)
Q Consensus 3 ~g~~~n~--------G~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~----------~~~g~tpLh~A~~~g~~~~v~ 61 (338)
+|+++|. |.||||+|+.. |+.+++++|+++|++++..+ +..|.||||+|+..|+.
T Consensus 28 ~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~---- 103 (256)
T 2etb_A 28 NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL---- 103 (256)
T ss_dssp HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCH----
T ss_pred cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCH----
Confidence 5777762 99999999999 99999999999988766322 25799999999999998
Q ss_pred HHHHcCHHHHHHHHHHCCCCCcccCCC-------------CChHHHHHHHhCCCHHHHHHHHh---cCCCCCccCCCCCC
Q psy5573 62 LLIHHGAKEIVDLLLDNGADVNFKSAT-------------GFTALHMACRFHDDDSIVRKLLR---HGAYYNVVDGKTGK 125 (338)
Q Consensus 62 ~Ll~~~~~~~~~~Ll~~g~~~~~~~~~-------------g~tpLh~A~~~~~~~~~v~~Ll~---~g~~~~~~~~~~g~ 125 (338)
+++++|+++|++++.++.. |.||||+|+.. ++.+++++|++ +|++++..+.. |+
T Consensus 104 --------~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~ga~~n~~d~~-g~ 173 (256)
T 2etb_A 104 --------QCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT-KQWDVVTYLLENPHQPASLEATDSL-GN 173 (256)
T ss_dssp --------HHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT-TCHHHHHHHHHCSSCCCCTTCCCTT-SC
T ss_pred --------HHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHc-CCHHHHHHHHhccccCCCcCccCCC-CC
Confidence 5566666778899999876 99999999998 99999999999 99999999988 99
Q ss_pred CHHHHHhh--cCCh
Q psy5573 126 TPLLHAGK--GARE 137 (338)
Q Consensus 126 tpL~~A~~--~~~~ 137 (338)
||||+|+. .+..
T Consensus 174 TpLh~A~~~~~~~~ 187 (256)
T 2etb_A 174 TVLHALVMIADNSP 187 (256)
T ss_dssp CHHHHHHHHCCSCH
T ss_pred CHHHHHHHcccCCc
Confidence 99999996 4443
No 58
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=5.6e-28 Score=203.98 Aligned_cols=119 Identities=24% Similarity=0.246 Sum_probs=102.2
Q ss_pred CCCCCC-------C-CCcHHHHHH---HcCCHHHHHHHHhcCCC-----------CCccccCCCCcHHHHHHHcCCHHHH
Q psy5573 3 SGATIN-------V-ELTPLCAAV---WDNNIRLVEYLLRTGHD-----------VNEKMKLDGRTALFVAVHFNHRHIA 60 (338)
Q Consensus 3 ~g~~~n-------~-G~t~Lh~A~---~~g~~~~v~~Ll~~g~~-----------~~~~~~~~g~tpLh~A~~~g~~~~v 60 (338)
.|+++| . |.||||+|+ ..|+.+++++|++.|++ ++..+ ..|+||||+|+..|+.
T Consensus 31 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~--- 106 (260)
T 3jxi_A 31 HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY-YRGQTALHIAIERRCK--- 106 (260)
T ss_dssp HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS-EESBCHHHHHHHTTCH---
T ss_pred cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc-cCCCCHHHHHHHcCCH---
Confidence 566776 3 999999999 67999999999998744 33333 5899999999999998
Q ss_pred HHHHHcCHHHHHHHHHHCCCCCcccC--------------CCCChHHHHHHHhCCCHHHHHHHHh---cCCCCCccCCCC
Q psy5573 61 ALLIHHGAKEIVDLLLDNGADVNFKS--------------ATGFTALHMACRFHDDDSIVRKLLR---HGAYYNVVDGKT 123 (338)
Q Consensus 61 ~~Ll~~~~~~~~~~Ll~~g~~~~~~~--------------~~g~tpLh~A~~~~~~~~~v~~Ll~---~g~~~~~~~~~~ 123 (338)
+++++|+++|++++.++ ..|.||||+|+.. ++.+++++|++ +|++++.++..
T Consensus 107 ---------~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~ga~~~~~d~~- 175 (260)
T 3jxi_A 107 ---------HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT-NQPHIVHYLTENGHKQADLRRQDSR- 175 (260)
T ss_dssp ---------HHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHT-TCHHHHHHHHHCSSCCCCTTCCCTT-
T ss_pred ---------HHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHc-CCHHHHHHHHhccccCCCCcccCCC-
Confidence 55666667788999998 6899999999998 99999999999 99999999988
Q ss_pred CCCHHHHHhhcCC
Q psy5573 124 GKTPLLHAGKGAR 136 (338)
Q Consensus 124 g~tpL~~A~~~~~ 136 (338)
|+||||+|+..+.
T Consensus 176 g~TpLh~A~~~~~ 188 (260)
T 3jxi_A 176 GNTVLHALVAIAD 188 (260)
T ss_dssp SCCHHHHHHHHCC
T ss_pred CCcHHHHHHHhcc
Confidence 9999999995443
No 59
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=2.2e-28 Score=207.96 Aligned_cols=223 Identities=17% Similarity=0.122 Sum_probs=154.3
Q ss_pred CCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCc----ccCCCCChHHHHHHHh--CCCHHHH
Q psy5573 33 GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVN----FKSATGFTALHMACRF--HDDDSIV 106 (338)
Q Consensus 33 g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~----~~~~~g~tpLh~A~~~--~~~~~~v 106 (338)
++..+..+ ..|+||||+|+..|+.++|+.|++ .+.+.+.+++ .++..|+||||+|+.. .++.+++
T Consensus 3 ~a~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~--------~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v 73 (273)
T 2pnn_A 3 SAGEKPPR-LYDRRSIFDAVAQSNCQELESLLP--------FLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73 (273)
T ss_dssp ---------CCCHHHHHHHHHTTCSSTTTTHHH--------HHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHH
T ss_pred cccCCCCC-cccchHHHHHHHcCCHHHHHHHHH--------HHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHH
Confidence 44555666 889999999999999988886654 3446777776 4588999999999962 3899999
Q ss_pred HHHHhcCCCCC-------c----cCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHHHHHHHH
Q psy5573 107 RKLLRHGAYYN-------V----VDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVT 175 (338)
Q Consensus 107 ~~Ll~~g~~~~-------~----~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (338)
++|+++|++.+ . .+.. |.||||+|+..+...+..+|...+.+.+..+..+.
T Consensus 74 ~~Ll~~ga~~~~~~~~i~~~~~~~d~~-g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~----------------- 135 (273)
T 2pnn_A 74 ALLLDVARKTDSLKQFVNASYTDSYYK-GQTALHIAIERRNMTLVTLLVENGADVQAAANGDF----------------- 135 (273)
T ss_dssp HHHHHHHHHTTCHHHHHTCCCCSTTTT-TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGG-----------------
T ss_pred HHHHHhhccccchhHHhhcccccccCC-CCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccc-----------------
Confidence 99999886532 2 3445 99999999988876555555444555444443220
Q ss_pred HhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHH---hhcCCccchhhhhhhccccccC
Q psy5573 176 KEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELT---KAFGPGDYNNFSLLKVTKNDAG 252 (338)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g 252 (338)
....+ ....+..|.||||+|+.. ...+.++.++. .+.... .+|..|
T Consensus 136 --~~~~~-------~~~~~~~g~tpL~~A~~~------------g~~~~v~~Ll~~~~~gad~~----------~~d~~g 184 (273)
T 2pnn_A 136 --FKKTK-------GRPGFYFGELPLSLAACT------------NQLAIVKFLLQNSWQPADIS----------ARDSVG 184 (273)
T ss_dssp --GSSCS-------SSCCCCSCBSHHHHHHHT------------TCHHHHHHHHHCSSCCCCTT----------CCCTTS
T ss_pred --ccccc-------ccccccCCCCHHHHHHHc------------CCHHHHHHHHhcccCCCCce----------eeCCCC
Confidence 00000 012355799999999875 23345556666 444443 788999
Q ss_pred CCHHHHHHHhCChhH--HHHHHhhcccCCCCCCCchHHHHHHHHHcCCCCCC-------CCCCCCCcHHHHHHHhcCccc
Q psy5573 253 ETILDIAKKRGFPLL--EELEKKLADANNDTTILDRLDEMKSLILEGTKEFG-------PGDYNNFSLLKVAKNDAGETI 323 (338)
Q Consensus 253 ~TpLh~A~~~g~~~i--~~ll~~~~d~~~~~~~l~~~~~v~~Ll~~g~~~~~-------~~d~~g~T~Lh~A~~~~~~~i 323 (338)
+||||+|+..|+... ..+ -.+++++|+++|+ +++ .+|..|+||||+|++.++.++
T Consensus 185 ~tpLh~A~~~~~~~~~~~~~---------------~~~~v~~Ll~~ga-~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~i 248 (273)
T 2pnn_A 185 NTVLHALVEVADNTVDNTKF---------------VTSMYNEILILGA-KLHPTLKLEEITNRKGLTPLALAASSGKIGV 248 (273)
T ss_dssp CCHHHHHHHHCCSCHHHHHH---------------HHHHHHHHHHHHH-HHCTTCCGGGCCCTTSCCHHHHHHHTTCHHH
T ss_pred CcHHHHHHHccCcchhHHHH---------------HHHHHHHHHHhhh-hcccccccccccCCCCCCHHHHHHHhChHHH
Confidence 999999999988322 010 0345899999988 776 599999999999999999998
Q ss_pred hhhhhh
Q psy5573 324 LGPTMI 329 (338)
Q Consensus 324 ~~~~~~ 329 (338)
+..++-
T Consensus 249 v~~Ll~ 254 (273)
T 2pnn_A 249 LAYILQ 254 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
No 60
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=1e-28 Score=215.50 Aligned_cols=199 Identities=16% Similarity=0.081 Sum_probs=143.2
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCc-cccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCCh
Q psy5573 13 PLCAAVWDNNIRLVEYLLRTGHDVNE-KMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFT 91 (338)
Q Consensus 13 ~Lh~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~t 91 (338)
.+|.|+..+..++++.|++.|++++. ++ ..|+||||+|+..|+. +++++|+++|++++.+|.+|+|
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d-~~g~TpLh~Aa~~g~~------------~~v~~Ll~~Gad~n~~d~~g~T 166 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVD-EHGNTPLHWLTSIANL------------ELVKHLVKHGSNRLYGDNMGES 166 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCCSCSCCS-TTCCCHHHHHHHTTCH------------HHHHHHHHTTCCTTBCCTTCCC
T ss_pred hhHHHHHhhHHHHHHHHHhcCCCcccccC-CCCCcHHHHHHHcCCH------------HHHHHHHHcCCCCCCcCCCCCC
Confidence 35778888888999999999999999 66 8999999999999998 5666666778899999999999
Q ss_pred HHHHHHHhCCC---HHHHHHHHhcC-CCCCccCCCCCCCHHHHHhh----cCCh-hHHHHHhhh----------------
Q psy5573 92 ALHMACRFHDD---DSIVRKLLRHG-AYYNVVDGKTGKTPLLHAGK----GARE-VNTVLLYFI---------------- 146 (338)
Q Consensus 92 pLh~A~~~~~~---~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~A~~----~~~~-~~~~ll~~~---------------- 146 (338)
|||+|+.. ++ .++++.|++.+ ++++..+.. |.||||+|+. .+.. .++.++...
T Consensus 167 pLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~d~~-g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~ 244 (327)
T 1sw6_A 167 CLVKAVKS-VNNYDSGTFEALLDYLYPCLILEDSM-NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT 244 (327)
T ss_dssp HHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEECTT-CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred HHHHHHHh-cccccHHHHHHHHHhhhccccCCCCC-CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence 99999997 77 67888888876 778889888 9999999996 5664 455555443
Q ss_pred ---hhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhcccccc
Q psy5573 147 ---NEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMK 223 (338)
Q Consensus 147 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~ 223 (338)
+..++..+..+.++++.+.. .+++...+ . ...+..|+||||+|++. +..+
T Consensus 245 ~~~g~~~~~~~~~g~t~L~~a~~-----~~~Ll~~~---~-------n~~d~~G~TpLh~A~~~------------g~~~ 297 (327)
T 1sw6_A 245 NEKESKPNDKNGERKDSILENLD-----LKWIIANM---L-------NAQDSNGDTCLNIAARL------------GNIS 297 (327)
T ss_dssp ---------------CHHHHHCS-----HHHHHHHT---T-------TCCCTTSCCHHHHHHHH------------CCHH
T ss_pred hcccCCcccccccCCChhHHHHH-----HHHHHHhC---C-------CCCCCCCCCHHHHHHHc------------CCHH
Confidence 44556666778888877665 22233322 1 24678899999999876 3445
Q ss_pred chhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhC
Q psy5573 224 SIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRG 263 (338)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g 263 (338)
.++.++..+.... .+|..|+||||+|+++|
T Consensus 298 ~v~~Ll~~Gad~~----------~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 298 IVDALLDYGADPF----------IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHHTTCCTT----------CCCTTSCCGGGGTCC--
T ss_pred HHHHHHHcCCCCc----------ccCCCCCCHHHHHHhcC
Confidence 6677777666654 78999999999999865
No 61
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=1.9e-27 Score=189.28 Aligned_cols=113 Identities=26% Similarity=0.307 Sum_probs=102.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc-CCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
+.++||.|+..|+.+++++|+++ +.+++..+ ..|+||||+|+..|+. +++++|++.|++++.++..
T Consensus 5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~ 71 (179)
T 3f6q_A 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGD-DHGFSPLHWACREGRS------------AVVEMLIMRGARINVMNRG 71 (179)
T ss_dssp --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHhcCcccccccC-CCCCCHHHHHHHcCcH------------HHHHHHHHcCCCCCCcCCC
Confidence 67999999999999999999997 66788887 8999999999999998 5666666778899999999
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~ 137 (338)
|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+..
T Consensus 72 g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~~-g~t~L~~A~~~~~~ 118 (179)
T 3f6q_A 72 DDTPLHLAASH-GHRDIVQKLLQYKADINAVNEH-GNVPLHYACFWGQD 118 (179)
T ss_dssp CCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCH
T ss_pred CCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCH
Confidence 99999999998 9999999999999999999988 99999999977764
No 62
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=1.8e-27 Score=180.62 Aligned_cols=126 Identities=25% Similarity=0.228 Sum_probs=111.9
Q ss_pred CCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC
Q psy5573 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79 (338)
Q Consensus 4 g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g 79 (338)
++++|. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+. |+. +++++|+++|
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~-~~~------------~~v~~Ll~~g 67 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALN-RFGRRPIQVMMM-GSA------------QVAELLLLHG 67 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCTTTTTSTT-SCH------------HHHHHHHHHT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcC-CCCCCHHHHHHc-CCH------------HHHHHHHHCC
Confidence 466776 9999999999999999999999999999998 899999999999 998 5555566677
Q ss_pred CCCcccCCC-CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhh
Q psy5573 80 ADVNFKSAT-GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYF 145 (338)
Q Consensus 80 ~~~~~~~~~-g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~ 145 (338)
++++.+|.. |.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|..
T Consensus 68 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~d~~-g~tpl~~A~~~~~~~~~~~Ll~ 132 (136)
T 1d9s_A 68 AEPNCADPATLTRPVHDAARE-GFLDTLVVLHRAGARLDVCDAW-GRLPVDLAEEQGHRDIARYLHA 132 (136)
T ss_dssp CCSSCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTCCCCCCCSSS-SSCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHHHHHHHH
Confidence 899999999 99999999998 9999999999999999999988 9999999997777544444443
No 63
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.4e-26 Score=179.92 Aligned_cols=112 Identities=29% Similarity=0.304 Sum_probs=101.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhc-CCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
|.||||.|+..|+.+++++|+++ +.+++..+ ..|.||||+ +..|+. +++++|++.|++++.+|..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~-~~~~~~------------~~v~~Ll~~g~~~~~~~~~ 67 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALN-RFGKTALQV-MMFGST------------AIALELLKQGASPNVQDTS 67 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCC-TTSCCHHHH-SCTTCH------------HHHHHHHHTTCCTTCCCTT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccC-CCCCcHHHH-HHcCCH------------HHHHHHHHCCCCCCCcCCC
Confidence 46899999999999999999998 44888888 899999999 999998 5566666778899999999
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCCh
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~ 137 (338)
|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+..
T Consensus 68 g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~ 114 (156)
T 1bd8_A 68 GTSPVHDAART-GFLDTLKVLVEHGADVNVPDGT-GALPIHLAVQEGHT 114 (156)
T ss_dssp SCCHHHHHHHT-TCHHHHHHHHHTTCCSCCCCTT-SCCHHHHHHHHTCH
T ss_pred CCCHHHHHHHc-CcHHHHHHHHHcCCCCCCcCCC-CCcHHHHHHHhChH
Confidence 99999999998 9999999999999999999988 99999999977764
No 64
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=1.2e-26 Score=179.74 Aligned_cols=141 Identities=23% Similarity=0.198 Sum_probs=107.9
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCC
Q psy5573 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGF 90 (338)
Q Consensus 11 ~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~ 90 (338)
.||||.|+..|+.+++++|+++|++++ .+ ..|.||||+|+..|+. +++++|++.|++++.++..|.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~g~ 68 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-TD-WLGTSPLHLAAQYGHF------------STTEVLLRAGVSRDARTKVDR 68 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-CC-TTCCCHHHHHHHHTCH------------HHHHHHHTTTCCTTCCCTTCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-cC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCCCCCCCC
Confidence 478888888888888888888888775 34 7788888888888887 455555566778888888888
Q ss_pred hHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHH
Q psy5573 91 TALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEM 167 (338)
Q Consensus 91 tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 167 (338)
||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++...+.+.+..+..+.++++.+...
T Consensus 69 t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 69 TPLHMAASE-GHANIVEVLLKHGADVNAKDML-KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp CHHHHHHHH-TCHHHHHHHHTTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHc-ChHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 888888887 8888888888888888888877 88888888877765555555555666666777778888766543
No 65
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=1.8e-26 Score=182.37 Aligned_cols=128 Identities=27% Similarity=0.181 Sum_probs=113.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|+++|++++.+|..|
T Consensus 36 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~g 102 (172)
T 3v30_A 36 GFTPLIWASAFGEIETVRFLLEWGADPHILA-KERESALSLASTGGYT------------DIVGLLLERDVDINIYDWNG 102 (172)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTCCCHHHHHHHTTCH------------HHHHHHHTTTCCTTCCCTTS
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCchhhc-ccCCCHHHHHHHCCCH------------HHHHHHHHcCCCCCCCCCCC
Confidence 9999999999999999999999999999998 8999999999999998 55666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKL 152 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~ 152 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++.........
T Consensus 103 ~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~t~l~~A~~~~~~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 103 GTPLLYAVRG-NHVKCVEALLARGADLTTEADS-GYTPMDLAVALGYRKVQQVIENHILKLFQ 163 (172)
T ss_dssp CCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCccccCCC-CCCHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence 9999999998 9999999999999999999988 99999999987776555555555544433
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=2.5e-26 Score=180.99 Aligned_cols=154 Identities=30% Similarity=0.291 Sum_probs=130.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
+.|+||+|++.|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~~~~g 80 (169)
T 2y1l_E 14 LGKKLLEAARAGRDDEVRILMANGADVNAED-ASGWTPLHLAAFNGHL------------EIVEVLLKNGADVNAVDHAG 80 (169)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred ccchHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCccCCCC
Confidence 6789999999999999999999999999988 8999999999999998 55556666778999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHH-H
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEM-K 168 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~-~ 168 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.+.+..+..+.++++.+... .
T Consensus 81 ~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 158 (169)
T 2y1l_E 81 MTPLRLAALF-GHLEIVEVLLKNGADVNANDME-GHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN 158 (169)
T ss_dssp CCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence 9999999998 9999999999999999999987 99999999988876555565566666777788888998876553 3
Q ss_pred HHHHHHHHhc
Q psy5573 169 SLILEVTKEF 178 (338)
Q Consensus 169 ~~~~~~~~~~ 178 (338)
..+.+++.++
T Consensus 159 ~~~~~~L~~~ 168 (169)
T 2y1l_E 159 EDLAEILQKL 168 (169)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHHc
Confidence 4566665544
No 67
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=5.1e-28 Score=201.61 Aligned_cols=114 Identities=21% Similarity=0.148 Sum_probs=74.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||.|++.|+.+.++.|+++|++++.. ..|.||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~--~~~~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~d~~g 70 (239)
T 1ycs_B 5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEF------------DLVQRIIYEVDDPSLPNDEG 70 (239)
T ss_dssp ----------------------------------CHHHHHHHHHHTCH------------HHHHHHTSTTSSCCCCCTTS
T ss_pred ccccCchhhhhhhHHHHHHHhccCCCcccC--chhhHHHHHHHHcCCH------------HHHHHHHHcCCCCCCcCCCC
Confidence 999999999999999999999999999864 6789999999999998 56666677788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVN 139 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~ 139 (338)
.||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..++..+
T Consensus 71 ~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~d~~-g~tpL~~A~~~~~~~~ 118 (239)
T 1ycs_B 71 ITALHNAVCA-GHTEIVKFLVQFGVNVNAADSD-GWTPLHCAASCNNVQV 118 (239)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHHTCCTTCCCTT-CCCHHHHHHHTTCHHH
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCCCccCCC-CCCHHHHHHHcCCHHH
Confidence 9999999998 9999999999999999999988 9999999998777533
No 68
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=196.51 Aligned_cols=114 Identities=27% Similarity=0.272 Sum_probs=103.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCC-CCCccccCCCCcHHHHHHH-----cCCHHHHHHHHHcCHHHHHHHHHHCCCCCc
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGH-DVNEKMKLDGRTALFVAVH-----FNHRHIAALLIHHGAKEIVDLLLDNGADVN 83 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpLh~A~~-----~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~ 83 (338)
|.||||+|+..|+.+++++|+++|+ +++..+ ..|.||||+|+. .++. +++++|++.|.+++
T Consensus 111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~g~tpL~~a~~~~~~~~~~~------------~~v~~Ll~~g~~~~ 177 (276)
T 4hbd_A 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQN-RAGYSPIMLTALATLKTQDDI------------ETVLQLFRLGNINA 177 (276)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC-TTSCCHHHHGGGCCCCSHHHH------------HHHHHHHHHSCTTC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC-CCCCCHHHHHHHHHhhhhhhH------------HHHHHHHHcCCCcc
Confidence 9999999999999999999999998 998888 899999999994 4554 66677777788899
Q ss_pred ccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChh
Q psy5573 84 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREV 138 (338)
Q Consensus 84 ~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~ 138 (338)
..+..|+||||+|+.. |+.+++++|+++|++++.++.. |.||||+|+..+...
T Consensus 178 ~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~gad~n~~d~~-G~TpLh~A~~~g~~~ 230 (276)
T 4hbd_A 178 KASQAGQTALMLAVSH-GRVDVVKALLACEADVNVQDDD-GSTALMCACEHGHKE 230 (276)
T ss_dssp CCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHH
T ss_pred ccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCCCCC-CCCHHHHHHHCCCHH
Confidence 9999999999999998 9999999999999999999988 999999999777643
No 69
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=3.5e-26 Score=180.15 Aligned_cols=129 Identities=40% Similarity=0.525 Sum_probs=118.5
Q ss_pred CCCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Q psy5573 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76 (338)
Q Consensus 1 l~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll 76 (338)
|++|+++|. |.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+. +++++|+
T Consensus 34 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~~~~Ll 100 (169)
T 2y1l_E 34 MANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD-HAGMTPLRLAALFGHL------------EIVEVLL 100 (169)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHH
T ss_pred HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCH------------HHHHHHH
Confidence 357889887 9999999999999999999999999999998 8999999999999997 7788889
Q ss_pred HCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHh
Q psy5573 77 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 144 (338)
Q Consensus 77 ~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~ 144 (338)
++|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|.
T Consensus 101 ~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 101 KNGADVNANDMEGHTPLHLAAMF-GHLEIVEVLLKNGADVNAQDKF-GKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHhCCHHHHHHHH
Confidence 99999999999999999999998 9999999999999999999988 999999999888765555443
No 70
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.94 E-value=5.4e-27 Score=178.16 Aligned_cols=126 Identities=32% Similarity=0.289 Sum_probs=109.7
Q ss_pred CCCCCC---CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCC
Q psy5573 4 GATINV---ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGA 80 (338)
Q Consensus 4 g~~~n~---G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~ 80 (338)
|+|+.. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|+++|+
T Consensus 1 G~d~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~~~~Ll~~g~ 67 (137)
T 3c5r_A 1 GIDPFTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD-HAGWTPLHEACNHGHL------------KVVELLLQHKA 67 (137)
T ss_dssp ---CCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTC
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCC
Confidence 677755 9999999999999999999999999999998 8999999999999998 55566667788
Q ss_pred CCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHh
Q psy5573 81 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 144 (338)
Q Consensus 81 ~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~ 144 (338)
+++.+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++.
T Consensus 68 ~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 68 LVNTTGYQNDSPLHDAAKN-GHVDIVKLLLSYGASRNAVNIF-GLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp CTTCCCGGGCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCGGGGCCCHHHHHHHSCC-
T ss_pred cccCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCCCCC-CCCHHHHHhhccHHHHHhhcc
Confidence 9999999999999999998 9999999999999999999988 999999998766554444443
No 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=3e-26 Score=179.16 Aligned_cols=129 Identities=23% Similarity=0.212 Sum_probs=114.7
Q ss_pred CCCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Q psy5573 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76 (338)
Q Consensus 1 l~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll 76 (338)
|++|+++|. |.||||+|+. |+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|+
T Consensus 25 l~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll 90 (162)
T 1ihb_A 25 LQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKD-RTGFAVIHDAARAGFL------------DTLQTLL 90 (162)
T ss_dssp TTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCH------------HHHHHHH
T ss_pred HhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCH------------HHHHHHH
Confidence 568899988 9999999999 99999999999999999998 8999999999999998 5566666
Q ss_pred HCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHhhcCChhHHHHHhh
Q psy5573 77 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY-YNVVDGKTGKTPLLHAGKGAREVNTVLLYF 145 (338)
Q Consensus 77 ~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~ 145 (338)
++|++++.+|..|.||||+|+.. ++.+++++|+++|++ ++..+.. |.||||+|+..+...+..+|..
T Consensus 91 ~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 91 EFQADVNIEDNEGNLPLHLAAKE-GHLRVVEFLVKHTASNVGHRNHK-GDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHccCCCCCCcCCC-CCcHHHHHHHcCCHHHHHHHHH
Confidence 77889999999999999999998 999999999999998 5888877 9999999998887655544443
No 72
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=4.5e-26 Score=172.86 Aligned_cols=120 Identities=38% Similarity=0.398 Sum_probs=109.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~d~~g 80 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKD-EYGLTPLYLATAHGHL------------EIVEVLLKNGADVNAVDAIG 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCTTC
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCcCCCCC
Confidence 8899999999999999999999999999998 8999999999999998 56666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 144 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~ 144 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|.
T Consensus 81 ~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~tpl~~A~~~~~~~~~~~Ll 133 (136)
T 2jab_A 81 FTPLHLAAFI-GHLEIAEVLLKHGADVNAQDKF-GKTAFDISIGNGNEDLAEILQ 133 (136)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCCcCcCCC-CCCHHHHHHHCCCHHHHHHHH
Confidence 9999999998 9999999999999999999988 999999999887765544443
No 73
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=6.4e-26 Score=178.24 Aligned_cols=131 Identities=28% Similarity=0.231 Sum_probs=115.3
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLD 77 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~ 77 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+. +++++|++
T Consensus 24 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~ 90 (167)
T 3v31_A 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLG-KGRESALSLACSKGYT------------DIVKMLLD 90 (167)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCH------------HHHHHHHH
T ss_pred HcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCCH------------HHHHHHHH
Confidence 45777877 9999999999999999999999999999998 8999999999999998 55555566
Q ss_pred CCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhH-HHHHhhhh
Q psy5573 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVN-TVLLYFIN 147 (338)
Q Consensus 78 ~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~-~~ll~~~~ 147 (338)
.|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+ ..|+....
T Consensus 91 ~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~L~~~~~ 159 (167)
T 3v31_A 91 CGVDVNEYDWNGGTPLLYAVHG-NHVKCVKMLLESGADPTIETDS-GYNSMDLAVALGYRSVQQVIESHLL 159 (167)
T ss_dssp HTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCcHHHHHHHHHHHH
Confidence 6789999999999999999998 9999999999999999999988 9999999997777544 44444433
No 74
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=5.8e-26 Score=182.70 Aligned_cols=129 Identities=30% Similarity=0.333 Sum_probs=115.4
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLD 77 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~ 77 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++
T Consensus 56 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~ 122 (192)
T 2rfm_A 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD-FSGKTPLMWSIIFGYS------------EMSYFLLE 122 (192)
T ss_dssp HHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCH------------HHHHHHHH
T ss_pred HhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCH------------HHHHHHHH
Confidence 45677776 9999999999999999999999999999998 8999999999999998 55666667
Q ss_pred CCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhh
Q psy5573 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYF 145 (338)
Q Consensus 78 ~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~ 145 (338)
.|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|..
T Consensus 123 ~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~t~l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 123 HGANVNDRNLEGETPLIVASKY-GRSEIVKKLLELGADISARDLT-GLTAEASARIFGRQEVIKIFTE 188 (192)
T ss_dssp TTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCBCTT-SCBHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCcCCC-CCCHHHHHHHhCcHHHHHHHHh
Confidence 7889999999999999999998 9999999999999999999988 9999999998887655444443
No 75
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.94 E-value=1.9e-26 Score=179.20 Aligned_cols=138 Identities=22% Similarity=0.172 Sum_probs=112.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 9 VELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 9 ~G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
.|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+ .|+. +++++|+++|++++.+|..
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~-~~~~------------~~v~~Ll~~g~~~~~~d~~ 76 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAGANPNAPN-SYGRRPIQVMM-MGSA------------RVAELLLLHGAEPNCADPA 76 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCC-SSSCCTTTSSC-TTCH------------HHHHHHHTTTCCCCCCCTT
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHH-cCCH------------HHHHHHHHcCCCCCCcCCC
Confidence 39999999999999999999999999999998 89999999985 8887 6666677778999999999
Q ss_pred CCh-HHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHH
Q psy5573 89 GFT-ALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILD 162 (338)
Q Consensus 89 g~t-pLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~ 162 (338)
|.| |||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.+.+..+..+.++..
T Consensus 77 g~ttpL~~A~~~-~~~~~v~~Ll~~ga~~~~~d~~-g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 77 TLTRPVHDAARE-GFLDTLVVLHRAGARLDVRDAW-GRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp TCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCCCTT-CCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred CCcHHHHHHHHC-CCHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999 99999998 9999999999999999999988 999999999888876666666667666666666655543
No 76
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2.9e-26 Score=179.84 Aligned_cols=156 Identities=25% Similarity=0.266 Sum_probs=122.0
Q ss_pred CCC-CCcHHHHHHHcCCHHHHHHHHh-cCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcc
Q psy5573 7 INV-ELTPLCAAVWDNNIRLVEYLLR-TGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNF 84 (338)
Q Consensus 7 ~n~-G~t~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~ 84 (338)
-|. |.||||.|+..|+.+++++|++ .+.+++..+ ..|.||||+|+..|+. +++++|++.|++++.
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~ 70 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIE-GRQSTPLHFAAGYNRV------------SVVEYLLQHGADVHA 70 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTT-TTCCCHHHHHHHTTCH------------HHHHHHHHTTCCTTC
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccc-cCCCCHHHHHHHcChH------------HHHHHHHhcCCCCCc
Confidence 344 8899999999999999999998 455666666 7889999999999997 555556667789999
Q ss_pred cCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHH
Q psy5573 85 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRL 164 (338)
Q Consensus 85 ~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 164 (338)
+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.+.+..+..+.++++.+
T Consensus 71 ~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a 148 (165)
T 3twr_A 71 KDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNVADLW-KFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLV 148 (165)
T ss_dssp CCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGS
T ss_pred cCCCCCCHHHHHHHc-CcHHHHHHHHhCCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhH
Confidence 999999999999997 9999999999999999998887 99999999987776555555555666666777777777665
Q ss_pred HHHHHHHHHHHHh
Q psy5573 165 DEMKSLILEVTKE 177 (338)
Q Consensus 165 ~~~~~~~~~~~~~ 177 (338)
......+.+++..
T Consensus 149 ~~~~~~i~~~L~~ 161 (165)
T 3twr_A 149 KDGDTDIQDLLRG 161 (165)
T ss_dssp CTTCHHHHHHHHT
T ss_pred hcCChHHHHHHhh
Confidence 5544455555444
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=8.4e-26 Score=179.67 Aligned_cols=136 Identities=26% Similarity=0.365 Sum_probs=120.2
Q ss_pred CCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC
Q psy5573 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79 (338)
Q Consensus 4 g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g 79 (338)
+.++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|+++|
T Consensus 29 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g 95 (179)
T 3f6q_A 29 ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMN-RGDDTPLHLAASHGHR------------DIVQKLLQYK 95 (179)
T ss_dssp TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCH------------HHHHHHHHTT
T ss_pred cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCH------------HHHHHHHHcC
Confidence 566776 9999999999999999999999999999998 8999999999999998 5666666778
Q ss_pred CCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhc
Q psy5573 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMA 154 (338)
Q Consensus 80 ~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~ 154 (338)
++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.|||++|+..+...+..++...+...+...
T Consensus 96 ~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 96 ADINAVNEHGNVPLHYACFW-GQDQVAEDLVANGALVSICNKY-GEMPVDKAKAPLRELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp CCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSSBCCTT-SCCGGGGSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred CCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcchhccC-CCCcHHHHHHHHHHHHHHHHHHhhcCcccCC
Confidence 89999999999999999998 9999999999999999999988 9999999998777666666666665554443
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=1.8e-25 Score=175.25 Aligned_cols=126 Identities=33% Similarity=0.425 Sum_probs=110.9
Q ss_pred CCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC
Q psy5573 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79 (338)
Q Consensus 4 g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g 79 (338)
+.+++. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|+++|
T Consensus 32 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g 98 (165)
T 3twr_A 32 SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKD-KGGLVPLHNACSYGHY------------EVAELLVKHG 98 (165)
T ss_dssp TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTT
T ss_pred CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccC-CCCCCHHHHHHHcCcH------------HHHHHHHhCC
Confidence 444444 8899999999999999999999999999998 8999999999999998 5566666778
Q ss_pred CCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHh
Q psy5573 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 144 (338)
Q Consensus 80 ~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~ 144 (338)
++++.+|..|.||||+|+.. ++.+++++|+++|++++.++.. |.||||+|+.++.+.+..|+.
T Consensus 99 ~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~t~l~~a~~~~~~i~~~L~~ 161 (165)
T 3twr_A 99 AVVNVADLWKFTPLHEAAAK-GKYEICKLLLQHGADPTKKNRD-GNTPLDLVKDGDTDIQDLLRG 161 (165)
T ss_dssp CCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCTGGGSCTTCHHHHHHHHT
T ss_pred CCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccCCC-CCChhHhHhcCChHHHHHHhh
Confidence 89999999999999999998 9999999999999999999988 999999988844445444443
No 79
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=3.9e-25 Score=171.18 Aligned_cols=127 Identities=30% Similarity=0.339 Sum_probs=117.0
Q ss_pred CCCCCCCC---CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHC
Q psy5573 2 FSGATINV---ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDN 78 (338)
Q Consensus 2 ~~g~~~n~---G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~ 78 (338)
++|++++. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|+++
T Consensus 23 ~~g~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~ 89 (153)
T 1awc_B 23 ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDART-KVDRTPLHMAASEGHA------------NIVEVLLKH 89 (153)
T ss_dssp HHTCCCCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCC-TTCCCHHHHHHHHTCH------------HHHHHHHTT
T ss_pred HcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcChH------------HHHHHHHHc
Confidence 45677765 9999999999999999999999999999998 8999999999999997 778888999
Q ss_pred CCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHH
Q psy5573 79 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143 (338)
Q Consensus 79 g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll 143 (338)
|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|
T Consensus 90 g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 90 GADVNAKDMLKMTALHWATEH-NHQEVVELLIKYGADVHTQSKF-CKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCccccCCC-CCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999998 9999999999999999999988 99999999988887665554
No 80
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=4.5e-25 Score=164.76 Aligned_cols=120 Identities=41% Similarity=0.540 Sum_probs=108.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+. +++++|++.|++++.++..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~~~~Ll~~g~~~~~~~~~g 68 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHL------------EVVKLLLEAGADVNAKDKNG 68 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHcCcH------------HHHHHHHHcCCCCcccCCCC
Confidence 8999999999999999999999999999988 8999999999999998 55556667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 144 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~ 144 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..++.
T Consensus 69 ~t~l~~A~~~-~~~~~~~~Ll~~g~~~~~~~~~-g~t~l~~A~~~~~~~~~~~Ll 121 (126)
T 1n0r_A 69 RTPLHLAARN-GHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLL 121 (126)
T ss_dssp CCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHc-ChHHHHHHHHHcCCCCcccCCC-CCCHHHHHHHcCcHHHHHHHH
Confidence 9999999998 9999999999999999999988 999999999877754444443
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=7.4e-26 Score=188.52 Aligned_cols=138 Identities=23% Similarity=0.279 Sum_probs=110.9
Q ss_pred CCCCCCCCC---CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHH
Q psy5573 1 MFSGATINV---ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLD 77 (338)
Q Consensus 1 l~~g~~~n~---G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~ 77 (338)
|++|+++|. |.||||.|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|++
T Consensus 25 l~~g~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~g~~------------~~v~~Ll~ 91 (239)
T 1ycs_B 25 IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPN-DEGITALHNAVCAGHT------------EIVKFLVQ 91 (239)
T ss_dssp ------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCC-TTSCCHHHHHHHHTCH------------HHHHHHHH
T ss_pred hccCCCcccCchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCCH------------HHHHHHHH
Confidence 578999988 8999999999999999999999999999998 8999999999999998 55556666
Q ss_pred CCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH--hhcCChhHHHHHhhhhhhhhh
Q psy5573 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA--GKGAREVNTVLLYFINEIFKL 152 (338)
Q Consensus 78 ~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A--~~~~~~~~~~ll~~~~~~~~~ 152 (338)
+|++++.+|..|+||||+|+.. ++.+++++|+++|++++..+...+.||||+| +..++..+..+|...+...+.
T Consensus 92 ~ga~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~ 167 (239)
T 1ycs_B 92 FGVNVNAADSDGWTPLHCAASC-NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI 167 (239)
T ss_dssp HTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTT
T ss_pred cCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccc
Confidence 7889999999999999999998 9999999999999999999988344999999 566665444455444444433
No 82
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=4.6e-26 Score=181.82 Aligned_cols=132 Identities=15% Similarity=0.224 Sum_probs=113.5
Q ss_pred CCcHHHHHHHcCCH----HHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCccc
Q psy5573 10 ELTPLCAAVWDNNI----RLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFK 85 (338)
Q Consensus 10 G~t~Lh~A~~~g~~----~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~ 85 (338)
|+||||+|+..|+. +++++|+++|++++.++ ..|+||||+|+..|+.++... .+++++|+++|+++|.+
T Consensus 38 g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d-~~g~TpLh~a~~~~~~~~~~~------~~iv~~Ll~~Gadin~~ 110 (186)
T 3t8k_A 38 KSNILYDVLRNNNDEARYKISMFLINKGADIKSRT-KEGTTLFFPLFQGGGNDITGT------TELCKIFLEKGADITAL 110 (186)
T ss_dssp TTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC-TTCCCTHHHHHHHCTTCHHHH------HHHHHHHHHTTCCSSSC
T ss_pred CCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCcchhhH------HHHHHHHHHCCCCCCcc
Confidence 99999999999975 59999999999999999 999999999999998554333 27889999999999999
Q ss_pred CCCCC-hHHHHHHHhC----CCHHHHHHHHh-cCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhh
Q psy5573 86 SATGF-TALHMACRFH----DDDSIVRKLLR-HGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEI 149 (338)
Q Consensus 86 ~~~g~-tpLh~A~~~~----~~~~~v~~Ll~-~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~ 149 (338)
|..|. ||||+|+..+ +..+++++|++ +|++++.++.. |.||||+|+..+...+..+|......
T Consensus 111 d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~-G~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW-GLTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTT-SCCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCC-CCCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999 9999999841 23569999999 99999999988 99999999988887666666554443
No 83
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=2e-28 Score=215.98 Aligned_cols=122 Identities=10% Similarity=0.018 Sum_probs=89.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCC---ccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCC---Cc
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVN---EKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD---VN 83 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~---~~ 83 (338)
+.||||+|++.|+.++|++|+++|+... ..+ ..|.||||+|+..|+.++|++|+++| ++ .+
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~-~~~~tpL~~Aa~~G~~eiv~~Ll~~g------------ad~~~~~ 158 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQ-AENYQAFRLAAENGHLHVLNRLCELA------------PTEIMAM 158 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--C-HHHHHHHHHHHHTTCHHHHHHHHHSC------------TTTHHHH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhc-cCCCCHHHHHHHcCCHHHHHHHHhCC------------CCccccc
Confidence 5699999999999999999999987321 222 46789999999999997666666555 33 12
Q ss_pred ccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCc--cCCCCCCCHHHHHh-hcCChhHHHHHhhhh
Q psy5573 84 FKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV--VDGKTGKTPLLHAG-KGAREVNTVLLYFIN 147 (338)
Q Consensus 84 ~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~tpL~~A~-~~~~~~~~~ll~~~~ 147 (338)
..+.+ .||||+|+.. |+.+++++|+++|++++. .+.. |.||||+|+ ..|+..+..+|...+
T Consensus 159 i~~~~-~TpLh~Aa~~-G~~eiv~~Ll~~ga~~~~~~~d~~-g~TpL~~Aa~~~G~~eiv~~Ll~~g 222 (376)
T 2aja_A 159 IQAEN-YHAFRLAAEN-GHLHVLNRLCELAPTEATAMIQAE-NYYAFRWAAVGRGHHNVINFLLDCP 222 (376)
T ss_dssp HSHHH-HHHHHHHHHT-TCHHHHHHHHHSCGGGHHHHHHHH-HHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred cCCCC-CCHHHHHHHC-CCHHHHHHHHHcCCccchhccCCC-CCCHHHHHHHHCCCHHHHHHHHhCC
Confidence 22223 8899999987 899999999998888776 6666 889999998 888754444444333
No 84
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.93 E-value=5.6e-25 Score=163.76 Aligned_cols=108 Identities=28% Similarity=0.288 Sum_probs=101.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~~~~d~~g 73 (123)
T 3aaa_C 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTL-EGGRKPLHYAADCGQL------------EILEFLLLKGADINAPDKHH 73 (123)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCC-TTSSCHHHHHHHTTCH------------HHHHHHHTTTCCTTCCCTTS
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCcCccC-CCCCcHHHHHHHcCCH------------HHHHHHHHcCCCCCcCCCCC
Confidence 8899999999999999999999999999998 8999999999999998 56666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHh
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG 132 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 132 (338)
+||||+|+.. ++.+++++|+++|++++..+.. |.||||+|.
T Consensus 74 ~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~t~l~~A~ 114 (123)
T 3aaa_C 74 ITPLLSAVYE-GHVSCVKLLLSKGADKTVKGPD-GLTAFEATD 114 (123)
T ss_dssp CCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHCC
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCCHHHHhC
Confidence 9999999998 9999999999999999999988 999999994
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=4.8e-25 Score=175.92 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=99.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
++++||.|++.|+.+.++.++..+.+ ..++..|+||||+|+..|+.+.- .+++++|+++|+++|.+|.+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~~~~~~g~T~Lh~A~~~~~~~~~--------~~iv~~Ll~~Gadvn~~d~~g 75 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--DKESVLKSNILYDVLRNNNDEAR--------YKISMFLINKGADIKSRTKEG 75 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--CHHHHHTTTHHHHHTTCSCHHHH--------HHHHHHHHHTTCCSSCCCTTC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--cccccCCCCHHHHHHHcCCcchH--------HHHHHHHHHCCCCCCCCCCCC
Confidence 57899999999999999999988754 44446799999999999985311 257888889999999999999
Q ss_pred ChHHHHHHHhCCC------HHHHHHHHhcCCCCCccCCCCCC-CHHHHHhhcCC
Q psy5573 90 FTALHMACRFHDD------DSIVRKLLRHGAYYNVVDGKTGK-TPLLHAGKGAR 136 (338)
Q Consensus 90 ~tpLh~A~~~~~~------~~~v~~Ll~~g~~~~~~~~~~g~-tpL~~A~~~~~ 136 (338)
+||||+|+.. ++ .+++++|+++|++++.++.. |. ||||+|+..+.
T Consensus 76 ~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadin~~d~~-g~ttpLh~A~~~~~ 127 (186)
T 3t8k_A 76 TTLFFPLFQG-GGNDITGTTELCKIFLEKGADITALYKP-YKIVVFKNIFNYFV 127 (186)
T ss_dssp CCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSSSCBGG-GTBCTTGGGGGCCS
T ss_pred CcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCCCccCCC-cCchHHHHHHHcCC
Confidence 9999999998 66 57899999999999999988 99 99999987543
No 86
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.92 E-value=1.3e-24 Score=168.65 Aligned_cols=123 Identities=22% Similarity=0.241 Sum_probs=109.9
Q ss_pred CCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC
Q psy5573 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79 (338)
Q Consensus 4 g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g 79 (338)
+.++|. |.||||+ +..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++.|
T Consensus 26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~g 91 (156)
T 1bd8_A 26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQD-TSGTSPVHDAARTGFL------------DTLKVLVEHG 91 (156)
T ss_dssp CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTT
T ss_pred CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcC-CCCCCHHHHHHHcCcH------------HHHHHHHHcC
Confidence 346666 9999999 99999999999999999999998 8999999999999998 5666666778
Q ss_pred CCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHH
Q psy5573 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143 (338)
Q Consensus 80 ~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll 143 (338)
++++.+|..|.||||+|+.. ++.+++++|+++ ++++..+.. |.||||+|+..+...+..++
T Consensus 92 ~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~-~~~~~~~~~-g~t~l~~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 92 ADVNVPDGTGALPIHLAVQE-GHTAVVSFLAAE-SDLHRRDAR-GLTPLELALQRGAQDLVDIL 152 (156)
T ss_dssp CCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHTT-SCTTCCCTT-SCCHHHHHHHSCCHHHHHHH
T ss_pred CCCCCcCCCCCcHHHHHHHh-ChHHHHHHHHhc-cCCCCcCCC-CCCHHHHHHHcCcHHHHHHH
Confidence 89999999999999999998 999999999999 999999988 99999999988875444443
No 87
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=1.2e-24 Score=181.73 Aligned_cols=108 Identities=32% Similarity=0.430 Sum_probs=100.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccC-CC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKS-AT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~-~~ 88 (338)
|.||||+|+..|+.+++++|++ |++++.++ ..|+||||+|+..|+. +++++|+++|++++.++ ..
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~g~~------------~~v~~Ll~~ga~~~~~~~~~ 110 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSD------------KCVRLLAEAGADLDHRDMRG 110 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBC-TTSCBHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCSSS
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcC-CCCCCHHHHHHHCCCH------------HHHHHHHHcCCCCCcCCCCC
Confidence 8999999999999999999999 99999998 8999999999999998 56666677788999998 88
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhh
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 133 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~ 133 (338)
|.||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+.
T Consensus 111 g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~d~~-g~t~l~~A~~ 153 (244)
T 3ui2_A 111 GLTALHMAAGY-VRPEVVEALVELGADIEVEDER-GLTALELARE 153 (244)
T ss_dssp CCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-CCCHHHHHHH
T ss_pred CCCHHHHHHHc-CCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHH
Confidence 99999999998 9999999999999999999988 9999999963
No 88
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.6e-25 Score=185.03 Aligned_cols=195 Identities=20% Similarity=0.113 Sum_probs=144.9
Q ss_pred HHHHHhcCCCCCccc--cCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCH
Q psy5573 26 VEYLLRTGHDVNEKM--KLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 103 (338)
Q Consensus 26 v~~Ll~~g~~~~~~~--~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~ 103 (338)
++.|+++|++++..+ +..|.||||+|+..|+. +++++|++.|++++.+|..|+||||+|+.. ++.
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~------------~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~ 67 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGEL------------EVVQQAVKEMNDPSQPNEEGITALHNAICG-ANY 67 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCH------------HHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCH
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCH------------HHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCH
Confidence 467888888877554 24577889999999998 555556667789999999999999999998 999
Q ss_pred HHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCC
Q psy5573 104 SIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDY 183 (338)
Q Consensus 104 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (338)
+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.+.
T Consensus 68 ~~v~~Ll~~ga~~n~~d~~-g~tpLh~A~~~g~~~~v~~Ll~~ga~~--------------------------------- 113 (229)
T 2vge_A 68 SIVDFLITAGANVNSPDSH-GWTPLHCAASCNDTVICMALVQHGAAI--------------------------------- 113 (229)
T ss_dssp HHHHHHHHTTCCTTCCCTT-CCCHHHHHHHTTCHHHHHHHHTTTCCT---------------------------------
T ss_pred HHHHHHHHCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCc---------------------------------
Confidence 9999999999999999988 999999999877753333332211100
Q ss_pred CCcchhHHHhhcCCCCHHHHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccc-cccCCCHHHHH--H
Q psy5573 184 NNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTK-NDAGETILDIA--K 260 (338)
Q Consensus 184 ~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~TpLh~A--~ 260 (338)
+.+ +.+|+||||+| +
T Consensus 114 --------------------------------------------------------------~~~~~~~g~tpL~~A~a~ 131 (229)
T 2vge_A 114 --------------------------------------------------------------FATTLSDGATAFEKCDPY 131 (229)
T ss_dssp --------------------------------------------------------------TCCCSSTTCCTGGGCCTT
T ss_pred --------------------------------------------------------------ccccCCCCCCHHHHHHHH
Confidence 022 35788999988 8
Q ss_pred HhCChhHH-HHHHhhcccC----CCCCCC---chHHHHHHHHHcCCCC--CCCCCCCCCcHHHHHHHhcCccchhhhhhh
Q psy5573 261 KRGFPLLE-ELEKKLADAN----NDTTIL---DRLDEMKSLILEGTKE--FGPGDYNNFSLLKVAKNDAGETILGPTMIQ 330 (338)
Q Consensus 261 ~~g~~~i~-~ll~~~~d~~----~~~~~l---~~~~~v~~Ll~~g~~~--~~~~d~~g~T~Lh~A~~~~~~~i~~~~~~~ 330 (338)
..|+.+++ +|+..+++.+ .+.+++ .....+++|+..|+ + ++.+|..|+||||+|+..++..++.....+
T Consensus 132 ~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga-~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~ 210 (229)
T 2vge_A 132 REGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGE-SVTVLRRDGPEETDWWWAALHGQEGYVPRNYFG 210 (229)
T ss_dssp STTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTC-EEEEEESSCTTCSSEEEEEETTEEEEEEGGGEE
T ss_pred hcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccc-cccccccCCCcccHHHHHHHcCCcceeehhhhh
Confidence 88888888 8888888866 344444 33345578888898 6 788999999999999999999998776554
No 89
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.91 E-value=2.3e-24 Score=177.48 Aligned_cols=124 Identities=27% Similarity=0.223 Sum_probs=106.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHC-CCCCcccCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDN-GADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~-g~~~~~~~~~ 88 (338)
|.||||+|+..|+.+++++|++.|++++.++ ..|+||||+|+..|+. +++++|++. |++++.+|..
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~-~~g~t~L~~A~~~~~~------------~~v~~Ll~~~g~~~~~~d~~ 139 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWACHGGHK------------DIVEMLFTQPNIELNQQNKL 139 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHTTSTTCCCCCCCTT
T ss_pred cccccccccccCcHHHHHHHHhCCCCccccC-CCCCCHHHHHHHcCCH------------HHHHHHHcCCCCCccccCCC
Confidence 7899999999999999999999999999998 8999999999999998 555556666 7999999999
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhh
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINE 148 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~ 148 (338)
|+||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+...+...+.
T Consensus 140 g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 140 GDTALHAAAWK-GYADIVQLLLAKGARTDLRNIE-KKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp SCCHHHHHHHH-TCHHHHHHHHHHTCCSCCCCTT-SCCHHHHCCSHHHHHHHC-------
T ss_pred CCCHHHHHHHc-CCHHHHHHHHHcCCCCccccCC-CCCHHHHhcchhHHHHHHHHhccch
Confidence 99999999998 9999999999999999999988 9999999997666544444443333
No 90
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.91 E-value=1.4e-23 Score=167.44 Aligned_cols=109 Identities=32% Similarity=0.412 Sum_probs=101.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccC-CC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKS-AT 88 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~-~~ 88 (338)
|.||||+|+..|+.+++++|++ |.+++.++ ..|+||||+|+..|+. +++++|+++|++++.++ ..
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d-~~g~t~L~~A~~~~~~------------~~v~~Ll~~ga~~~~~~~~~ 109 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-DRDVDAVD-ENGRTALLFVAGLGSD------------KCVRLLAEAGADLDHRDMRG 109 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-TSCTTCCC-TTSCCHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCSSS
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-cCCCCCcC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCcCCCCC
Confidence 8999999999999999999999 99999998 8999999999999998 56666677788999998 89
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhc
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKG 134 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 134 (338)
|+||||+|+.. ++.+++++|+++|++++.++.. |.||||+|+..
T Consensus 110 g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~d~~-g~tpl~~A~~~ 153 (183)
T 3deo_A 110 GLTALHMAAGY-VRPEVVEALVELGADIEVEDER-GLTALELAREI 153 (183)
T ss_dssp SCCHHHHHHHT-TCHHHHHHHHHHTCCTTCCCTT-SCCHHHHHHHH
T ss_pred CCCHHHHHHhc-CcHHHHHHHHHcCCCCcCCCCC-CCCHHHHHHHh
Confidence 99999999998 9999999999999999999988 99999999853
No 91
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.90 E-value=2e-23 Score=147.25 Aligned_cols=92 Identities=45% Similarity=0.627 Sum_probs=85.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|++.|++++.+|.+|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d-~~g~t~L~~A~~~~~~------------~~v~~Ll~~ga~~~~~d~~g 68 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHL------------EVVKLLLEAGADVNAKDKNG 68 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCccCCCC
Confidence 7999999999999999999999999999998 8999999999999998 55666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCC
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAY 115 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~ 115 (338)
.||||+|+.. ++.+++++|+++|++
T Consensus 69 ~t~l~~A~~~-~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 69 RTPLHLAARN-GHLEVVKLLLEAGAY 93 (93)
T ss_dssp CCHHHHHHHT-TCHHHHHHHHHTTCC
T ss_pred CCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence 9999999998 999999999999875
No 92
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=1.3e-25 Score=198.01 Aligned_cols=239 Identities=11% Similarity=-0.026 Sum_probs=150.6
Q ss_pred CCcHHHHHHH-cCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCC
Q psy5573 10 ELTPLCAAVW-DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88 (338)
Q Consensus 10 G~t~Lh~A~~-~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~ 88 (338)
+.+++++|+. .++.+++++++++|.+ ++||||+|+..|+.++|++|+++|. .....+..+..
T Consensus 65 ~ll~~~~a~~~~~~~~~~~~l~~~g~~--------~~T~Lh~Aa~~G~~e~v~~Ll~~ga---------~~~~~~~~~~~ 127 (376)
T 2aja_A 65 QLLCLYYAHYNRNAKQLWSDAHKKGIK--------SEVICFVAAITGCSSALDTLCLLLT---------SDEIVKVIQAE 127 (376)
T ss_dssp HHHHHHHHHTTTTCTTHHHHHHHHTCC--------HHHHHHHHHHHCCHHHHHHHTTC-----------CCSSCC--CHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCC--------cCCHHHHHHHcCCHHHHHHHHHcCC---------cHHHHHHhccC
Confidence 5678888877 4788999999988754 4599999999999966666665543 00112234557
Q ss_pred CChHHHHHHHhCCCHHHHHHHHhcCCCCCc--cCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHH
Q psy5573 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNV--VDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDE 166 (338)
Q Consensus 89 g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~ 166 (338)
|.||||+|+.+ |+.+++++|+++|+++.. .... +.||||+|+..|+..+..+|...+.....
T Consensus 128 ~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~~~-~~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~-------------- 191 (376)
T 2aja_A 128 NYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQAE-NYHAFRLAAENGHLHVLNRLCELAPTEAT-------------- 191 (376)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHSHH-HHHHHHHHHHTTCHHHHHHHHHSCGGGHH--------------
T ss_pred CCCHHHHHHHc-CCHHHHHHHHhCCCCccccccCCC-CCCHHHHHHHCCCHHHHHHHHHcCCccch--------------
Confidence 88999999998 999999999999986321 1122 37999999988885444444433332211
Q ss_pred HHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHHHHHH-HhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhh
Q psy5573 167 MKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFF-ELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLK 245 (338)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (338)
...+..|.||||+|+ ..+. .+.++.++..
T Consensus 192 ------------------------~~~d~~g~TpL~~Aa~~~G~------------~eiv~~Ll~~-------------- 221 (376)
T 2aja_A 192 ------------------------AMIQAENYYAFRWAAVGRGH------------HNVINFLLDC-------------- 221 (376)
T ss_dssp ------------------------HHHHHHHHHHHHHHHSTTCC------------HHHHHHHTTS--------------
T ss_pred ------------------------hccCCCCCCHHHHHHHHCCC------------HHHHHHHHhC--------------
Confidence 012334567777776 5421 1222222220
Q ss_pred ccccccCCCHHHHHHHhCChhHH-HHHHhhcccCCCCCCC---------------------------------chHHHHH
Q psy5573 246 VTKNDAGETILDIAKKRGFPLLE-ELEKKLADANNDTTIL---------------------------------DRLDEMK 291 (338)
Q Consensus 246 ~~~~~~g~TpLh~A~~~g~~~i~-~ll~~~~d~~~~~~~l---------------------------------~~~~~v~ 291 (338)
...|.||||+|++.|+.+++ +|+.++++.+...+++ +..+.++
T Consensus 222 ---ga~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~ 298 (376)
T 2aja_A 222 ---PVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIR 298 (376)
T ss_dssp ---HHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHH
T ss_pred ---CCccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHH
Confidence 11367888888888888877 6666666543111111 2345666
Q ss_pred HHHHcCCC----CCCCCCCCCCcHHHHHHHhcCccchhhhhhhhhhc
Q psy5573 292 SLILEGTK----EFGPGDYNNFSLLKVAKNDAGETILGPTMIQLSWI 334 (338)
Q Consensus 292 ~Ll~~g~~----~~~~~d~~g~T~Lh~A~~~~~~~i~~~~~~~~~~~ 334 (338)
+|++.+.. ......+.+.||||+|+..++.+++..++......
T Consensus 299 ~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v~ 345 (376)
T 2aja_A 299 FLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVL 345 (376)
T ss_dssp HHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHHH
T ss_pred HHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHHH
Confidence 66653321 11223356779999999999999998887654433
No 93
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=1.7e-23 Score=162.39 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=90.2
Q ss_pred CCCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCc-HHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Q psy5573 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRT-ALFVAVHFNHRHIAALLIHHGAKEIVDLL 75 (338)
Q Consensus 1 l~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t-pLh~A~~~g~~~~v~~Ll~~~~~~~~~~L 75 (338)
|++|+++|. |.||||+|+ .|+.+++++|+++|++++.++ ..|.| |||+|+..|+. +++++|
T Consensus 32 l~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d-~~g~ttpL~~A~~~~~~------------~~v~~L 97 (156)
T 1bi7_B 32 LEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCAD-PATLTRPVHDAAREGFL------------DTLVVL 97 (156)
T ss_dssp HTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCC-TTTCCCHHHHHHHHTCH------------HHHHHH
T ss_pred HHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcC-CCCCcHHHHHHHHCCCH------------HHHHHH
Confidence 467899988 999999996 899999999999999999998 89999 99999999998 555566
Q ss_pred HHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHH
Q psy5573 76 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131 (338)
Q Consensus 76 l~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A 131 (338)
+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.. |.||.+-+
T Consensus 98 l~~ga~~~~~d~~g~tpl~~A~~~-~~~~~v~~Ll~~ga~~~~~~~~-g~t~~~~~ 151 (156)
T 1bi7_B 98 HRAGARLDVRDAWGRLPVDLAEEL-GHRDVARYLRAAAGGTRGSNHA-RIDAAEGP 151 (156)
T ss_dssp HHHTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHSSCC------------------
T ss_pred HHcCCCCcccCCCCCCHHHHHHHh-CHHHHHHHHHHcCCCCCccCcC-cCcccccC
Confidence 667889999999999999999998 9999999999999999999988 99998744
No 94
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.2e-23 Score=167.81 Aligned_cols=138 Identities=21% Similarity=0.221 Sum_probs=109.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCC
Q psy5573 42 LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 121 (338)
Q Consensus 42 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~ 121 (338)
..|.||||+|+..|+. ++++.|++ |++++.+|..|+||||+|+.. ++.+++++|+++|++++..+.
T Consensus 42 ~~g~t~L~~A~~~g~~------------~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~~ 107 (183)
T 3deo_A 42 SEYETPWWTAARKADE------------QALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRDM 107 (183)
T ss_dssp HHHHHHHHHHHHTTCH------------HHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCS
T ss_pred CCCCCHHHHHHHcCCH------------HHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCCC
Confidence 5789999999999998 55555666 789999999999999999998 999999999999999999984
Q ss_pred CCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHHHHHHHHHHHHHhcCCCCCCCcchhHHHhhcCCCCHH
Q psy5573 122 KTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETIL 201 (338)
Q Consensus 122 ~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l 201 (338)
..|.||||+|+..+...+..+|...+.+. ...+..|.|||
T Consensus 108 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~----------------------------------------~~~d~~g~tpl 147 (183)
T 3deo_A 108 RGGLTALHMAAGYVRPEVVEALVELGADI----------------------------------------EVEDERGLTAL 147 (183)
T ss_dssp SSSCCHHHHHHHTTCHHHHHHHHHHTCCT----------------------------------------TCCCTTSCCHH
T ss_pred CCCCCHHHHHHhcCcHHHHHHHHHcCCCC----------------------------------------cCCCCCCCCHH
Confidence 44999999999877754444433222211 12567889999
Q ss_pred HHHHHhhcccchhhhhccccccchhHHHHhhcCCccchhhhhhhccccccCCCHHHHHHHhCChhHHHHHH
Q psy5573 202 DIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEK 272 (338)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~TpLh~A~~~g~~~i~~ll~ 272 (338)
|+|++. .....+.|||++|++.|+.+++.+|.
T Consensus 148 ~~A~~~---------------------------------------~~~~~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 148 ELAREI---------------------------------------LKTTPKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HHHHHH---------------------------------------HHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh---------------------------------------ccCcccccHHHHHHHcCHHHHHHHHH
Confidence 999765 12346789999999999999965443
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=3.5e-22 Score=171.62 Aligned_cols=123 Identities=26% Similarity=0.328 Sum_probs=108.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCc------cccCCCCcHHHHHHHc---CCHHHHHHHHHcCHHHHHHHHHHCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNE------KMKLDGRTALFVAVHF---NHRHIAALLIHHGAKEIVDLLLDNGA 80 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~------~~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~Ll~~g~ 80 (338)
+.++||.|+..|+.+.++.|++.|++++. .+ ..|+||||+|+.. |+. +++++|+++|+
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~~------------~iv~~Ll~~ga 217 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-APEELVLHLAVKVANQASL------------PLVDFIIQNGG 217 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSC-SCEECHHHHHHHTCCTTTH------------HHHHHHHHHSS
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccC-CCCccHHHHHHHhcccCcH------------HHHHHHHhcCC
Confidence 45779999999999999999999999987 45 8899999999998 676 66667777789
Q ss_pred CCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhh
Q psy5573 81 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFIN 147 (338)
Q Consensus 81 ~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~ 147 (338)
+++.+|..|+||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+
T Consensus 218 dvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~d~~-G~TpL~~A~~~~~~~iv~~Ll~~g 282 (301)
T 2b0o_E 218 HLDAKAADGNTALHYAALY-NQPDCLKLLLKGRALVGTVNEA-GETALDIARKKHHKECEELLEQAQ 282 (301)
T ss_dssp CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCCSCCCTT-SCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHhc
Confidence 9999999999999999998 9999999999999999999988 999999999877765555554443
No 96
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.87 E-value=1.2e-22 Score=149.18 Aligned_cols=104 Identities=38% Similarity=0.414 Sum_probs=94.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++.|++++.+|..|
T Consensus 9 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~------------~~~~~Ll~~g~~~~~~d~~g 75 (115)
T 2l6b_A 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARS-KDGNTPLHLAAKNGHA------------EIVKLLLAKGADVNARSKDG 75 (115)
T ss_dssp SCCHHHHHHHHTCHHHHHHHTTTTCCSSCCC-SSSCCTTHHHHTTTCH------------HHHHHHTTTTCCTTCCCTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC-CCCCCHHHHHHHcCcH------------HHHHHHHHcCCCCcccCCCC
Confidence 9999999999999999999999999999998 8999999999999998 56666667788999999999
Q ss_pred ChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHH
Q psy5573 90 FTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL 128 (338)
.||||+|+.. ++.+++++|+++|++++..+.. |.||-
T Consensus 76 ~tpl~~A~~~-~~~~~~~~Ll~~ga~~n~~~~~-~~~~~ 112 (115)
T 2l6b_A 76 NTPEHLAKKN-GHHEIVKLLDAKGADVNARSWG-SSHHH 112 (115)
T ss_dssp CCTTHHHHTT-TCHHHHHHHHTTSSSHHHHSCC-CC---
T ss_pred CCHHHHHHHC-CCHHHHHHHHHcCCCCCcCCcc-ccccc
Confidence 9999999998 9999999999999999999987 88874
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.87 E-value=1.3e-21 Score=171.94 Aligned_cols=123 Identities=28% Similarity=0.268 Sum_probs=109.5
Q ss_pred CCcHHHHHHHc-CCHHHHHHHHhcCCCCCcccc-CCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCC
Q psy5573 10 ELTPLCAAVWD-NNIRLVEYLLRTGHDVNEKMK-LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSA 87 (338)
Q Consensus 10 G~t~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~~-~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~ 87 (338)
+.|+||.|+.. |+.+++++|+++|++++..+. ..|.||||+|+..|+. +++++|+++|++++.+|.
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~------------~iv~~LL~~Gadvn~~d~ 266 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSL------------LACEFLLQNGANVNQADS 266 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCT
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCH------------HHHHHHHHcCCCCCCCCC
Confidence 56899999999 999999999999999998762 6799999999999998 566666777899999999
Q ss_pred CCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhh
Q psy5573 88 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 146 (338)
Q Consensus 88 ~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~ 146 (338)
.|+||||+|+.. ++.+++++|+++|++++..+.. |.||||+|+..++..+..+|...
T Consensus 267 ~G~TpLh~A~~~-g~~~~v~~LL~~Gad~~~~d~~-G~TpL~~A~~~g~~~iv~lLl~~ 323 (368)
T 3jue_A 267 AGRGPLHHATIL-GHTGLACLFLKRGADLGARDSE-GRDPLTIAMETANADIVTLLRLA 323 (368)
T ss_dssp TSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHc-CcHHHHHHHHHCcCCCCCcCCC-CCCHHHHHHHCCCHHHHHHHHHc
Confidence 999999999998 9999999999999999999988 99999999988876555555443
No 98
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=1.4e-22 Score=153.43 Aligned_cols=100 Identities=19% Similarity=0.149 Sum_probs=92.0
Q ss_pred CCCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCC-CCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHH
Q psy5573 1 MFSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLD-GRTALFVAVHFNHRHIAALLIHHGAKEIVDLL 75 (338)
Q Consensus 1 l~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~L 75 (338)
|++|+++|. |.||||+|+. |+.+++++|+++|++++.++ .. |+||||+|+..|+. +++++|
T Consensus 32 l~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~-~~~g~t~L~~A~~~~~~------------~~v~~L 97 (136)
T 1d9s_A 32 LEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCAD-PATLTRPVHDAAREGFL------------DTLVVL 97 (136)
T ss_dssp HHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCB-TTTTBCHHHHHHHHTCH------------HHHHHH
T ss_pred HHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcC-CCCCCCHHHHHHHcCCH------------HHHHHH
Confidence 357889988 9999999999 99999999999999999998 77 99999999999998 566666
Q ss_pred HHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCC
Q psy5573 76 LDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 115 (338)
Q Consensus 76 l~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~ 115 (338)
+++|++++.+|..|.||||+|+.. ++.+++++|+++|+|
T Consensus 98 l~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 98 HRAGARLDVCDAWGRLPVDLAEEQ-GHRDIARYLHAATGD 136 (136)
T ss_dssp HHTCCCCCCCSSSSSCHHHHHHHH-TCHHHHHHHHHHHCC
T ss_pred HHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence 777899999999999999999998 999999999999885
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=2.4e-21 Score=164.56 Aligned_cols=124 Identities=31% Similarity=0.376 Sum_probs=108.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCcc------ccCCCCcHHHHHHHc---CCHHHHHHHHHcCHHHHHHHHHHCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEK------MKLDGRTALFVAVHF---NHRHIAALLIHHGAKEIVDLLLDNGA 80 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~------~~~~g~tpLh~A~~~---g~~~~v~~Ll~~~~~~~~~~Ll~~g~ 80 (338)
..++|+.|+..|+.+.++.+++.|++++.. + ..|+||||+|+.. |+. +++++|+++|+
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~-~~g~t~Lh~A~~~~~~~~~------------~~v~~Ll~~ga 196 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGH-EPDETALHLAVRSVDRTSL------------HIVDFLVQNSG 196 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCS-STTCBHHHHHHHHCCTTTH------------HHHHHHHHHCS
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccc-cCCCCcchHHHHhcccchH------------HHHHHHHHCCC
Confidence 457999999999999999999999985543 5 7899999999999 777 66666777788
Q ss_pred CCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhh
Q psy5573 81 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINE 148 (338)
Q Consensus 81 ~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~ 148 (338)
++|.+|..|+||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..+...+..+|...+.
T Consensus 197 ~in~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gad~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 197 NLDKQTGKGSTALHYCCLT-DNAECLKLLLRGKASIEIANES-GETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCccCC-CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 9999999999999999998 9999999999999999999988 9999999998888655555554443
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=1.4e-22 Score=174.02 Aligned_cols=114 Identities=26% Similarity=0.248 Sum_probs=96.9
Q ss_pred CCCCCCCC----------CCcHHHHHHHc---CCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCH
Q psy5573 2 FSGATINV----------ELTPLCAAVWD---NNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68 (338)
Q Consensus 2 ~~g~~~n~----------G~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 68 (338)
+.|+|+|. |.||||+|+.. |+.+++++|+++|++++.++ ..|+||||+|+..|+.
T Consensus 172 ~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d-~~G~TpLh~A~~~g~~----------- 239 (301)
T 2b0o_E 172 ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQP----------- 239 (301)
T ss_dssp HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCC-TTCCCHHHHHHHTTCH-----------
T ss_pred hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHcCCH-----------
Confidence 45677652 99999999997 89999999999999999998 8999999999999998
Q ss_pred HHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCC
Q psy5573 69 KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAR 136 (338)
Q Consensus 69 ~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~ 136 (338)
+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++ . |.||||+|+..++
T Consensus 240 -~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~-~~~~iv~~Ll~~ga~------~-g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 240 -DCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAG------T-FAFPLHVDYSWVI 298 (301)
T ss_dssp -HHHHHHHHTTCCCSCCCTTSCCHHHHHHHH-TCHHHHHHHHHHHHH------T-TSSCCC-------
T ss_pred -HHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhcCC------C-CCChhHHHHhcCC
Confidence 566666777899999999999999999998 999999999999875 3 8899999997665
No 101
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=1.4e-21 Score=147.93 Aligned_cols=98 Identities=35% Similarity=0.480 Sum_probs=90.0
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLD 77 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~ 77 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++
T Consensus 35 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d-~~g~t~L~~A~~~~~~------------~~v~~Ll~ 101 (136)
T 2jab_A 35 ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD-AIGFTPLHLAAFIGHL------------EIAEVLLK 101 (136)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHHTCH------------HHHHHHHH
T ss_pred HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCC-CCCCCHHHHHHHcCCH------------HHHHHHHH
Confidence 57889887 9999999999999999999999999999998 8999999999999998 55666667
Q ss_pred CCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcC
Q psy5573 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHG 113 (338)
Q Consensus 78 ~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g 113 (338)
+|++++.+|..|.||||+|+.. ++.+++++|+++|
T Consensus 102 ~g~~~~~~~~~g~tpl~~A~~~-~~~~~~~~Ll~~G 136 (136)
T 2jab_A 102 HGADVNAQDKFGKTAFDISIGN-GNEDLAEILQKLN 136 (136)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHC-
T ss_pred cCCCCcCcCCCCCCHHHHHHHC-CCHHHHHHHHHcC
Confidence 7889999999999999999998 9999999999876
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=1.8e-21 Score=179.01 Aligned_cols=128 Identities=25% Similarity=0.279 Sum_probs=110.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCcc------ccCCCCcHHHHHHH---cCCHHHHHHHHHcCHHHHHHHHHHCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEK------MKLDGRTALFVAVH---FNHRHIAALLIHHGAKEIVDLLLDNGA 80 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~------~~~~g~tpLh~A~~---~g~~~~v~~Ll~~~~~~~~~~Ll~~g~ 80 (338)
..+.||.|+..|+.+.|+.|+++|++++.. + ..|.||||+|+. .|+. +++++|+++|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~-~~g~t~Lh~A~~~a~~g~~------------~~v~~Ll~~ga 198 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQ-APEELVLHLAVKVANQASL------------PLVDFIIQNGG 198 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSC-CSCBCHHHHHHHTCCTTTH------------HHHHHHHHHSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccc-cccchHHHHHHHhcccccH------------HHHHHHHHcCC
Confidence 346799999999999999999999999977 5 789999999977 8887 66666777789
Q ss_pred CCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhh
Q psy5573 81 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKL 152 (338)
Q Consensus 81 ~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~ 152 (338)
++|.+|..|+||||+|+.. |+.+++++|+++|++++..+.. |.||||+|+..++..+..+|...+.+...
T Consensus 199 ~vn~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~ga~~~~~d~~-g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~ 268 (497)
T 3lvq_E 199 HLDAKAADGNTALHYAALY-NQPDCLKLLLKGRALVGTVNEA-GETALDIARKKHHKECEELLEQAQAGTFA 268 (497)
T ss_dssp CTTCCCSSSCCHHHHHTTT-TCHHHHHHHHHTCCCCSCCCTT-CCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred CCCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCcCCC-CCCHHHHHHHcCCHHHHHHHHHhCCCCCC
Confidence 9999999999999999998 9999999999999999999988 99999999988887666666665555444
No 103
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=6.2e-21 Score=142.07 Aligned_cols=100 Identities=44% Similarity=0.621 Sum_probs=91.8
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLD 77 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~ 77 (338)
++|+++|. |.||||+|+..|+.+++++|+++|++++.++ ..|.||||+|+..|+. +++++|++
T Consensus 23 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~A~~~~~~------------~~~~~Ll~ 89 (126)
T 1n0r_A 23 EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD-KNGRTPLHLAARNGHL------------EVVKLLLE 89 (126)
T ss_dssp HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHTTCH------------HHHHHHHH
T ss_pred HcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcChH------------HHHHHHHH
Confidence 45788877 9999999999999999999999999999998 8999999999999998 55666667
Q ss_pred CCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCC
Q psy5573 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 115 (338)
Q Consensus 78 ~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~ 115 (338)
+|++++.+|..|.||||+|+.. ++.+++++|+++|++
T Consensus 90 ~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 90 AGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCC
T ss_pred cCCCCcccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCC
Confidence 7889999999999999999998 999999999999985
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=2.3e-20 Score=131.37 Aligned_cols=88 Identities=42% Similarity=0.555 Sum_probs=76.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCC
Q psy5573 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 122 (338)
Q Consensus 43 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~ 122 (338)
+|+||||+|+..|+. +++++|++.|++++.+|..|+||||+|+.. ++.+++++|+++|++++.++..
T Consensus 1 ~g~t~L~~A~~~~~~------------~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~d~~ 67 (93)
T 1n0q_A 1 NGRTPLHLAARNGHL------------EVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAKDKN 67 (93)
T ss_dssp --CCHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTT
T ss_pred CCCcHHHHHHHcCCH------------HHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCccCCC
Confidence 489999999999998 556666677889999999999999999998 9999999999999999999988
Q ss_pred CCCCHHHHHhhcCChhHHHHHh
Q psy5573 123 TGKTPLLHAGKGAREVNTVLLY 144 (338)
Q Consensus 123 ~g~tpL~~A~~~~~~~~~~ll~ 144 (338)
|.||||+|+..+...+..+|.
T Consensus 68 -g~t~l~~A~~~~~~~~~~~Ll 88 (93)
T 1n0q_A 68 -GRTPLHLAARNGHLEVVKLLL 88 (93)
T ss_dssp -SCCHHHHHHHTTCHHHHHHHH
T ss_pred -CCCHHHHHHHcCCHHHHHHHH
Confidence 999999999877754444443
No 105
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.83 E-value=1.5e-20 Score=142.39 Aligned_cols=117 Identities=29% Similarity=0.305 Sum_probs=95.3
Q ss_pred CCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhc
Q psy5573 33 GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112 (338)
Q Consensus 33 g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~ 112 (338)
|+++ .++ ..|+||||+|+..|+. +++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++
T Consensus 1 G~d~-~~~-~~g~t~L~~A~~~~~~------------~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~ 65 (137)
T 3c5r_A 1 GIDP-FTN-HRGETLLHIASIKGDI------------PSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQH 65 (137)
T ss_dssp ---C-CCC-TTCCCHHHHHHHHTCH------------HHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred CCCC-CcC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHc
Confidence 4566 455 8999999999999998 555666677889999999999999999998 999999999999
Q ss_pred CCCCCccCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHHH
Q psy5573 113 GAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLD 165 (338)
Q Consensus 113 g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~ 165 (338)
|++++..+.. |.||||+|+..+...+..+|...+.+.+..+..+.++++.+.
T Consensus 66 g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~ 117 (137)
T 3c5r_A 66 KALVNTTGYQ-NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117 (137)
T ss_dssp TCCTTCCCGG-GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC
T ss_pred CCcccCcCCC-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh
Confidence 9999999988 999999999888765555555556666666667777766544
No 106
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=4.8e-20 Score=153.74 Aligned_cols=111 Identities=23% Similarity=0.255 Sum_probs=95.9
Q ss_pred CCCCCC----CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCC
Q psy5573 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79 (338)
Q Consensus 4 g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g 79 (338)
|+++|. |.||||+|+..|+.++|++|+++|++++.+++..|+||||+|+..|+. +++++|+++|
T Consensus 67 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~------------~~v~~Ll~~g 134 (244)
T 3ui2_A 67 DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRP------------EVVEALVELG 134 (244)
T ss_dssp TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCH------------HHHHHHHHTT
T ss_pred CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCH------------HHHHHHHHCC
Confidence 888888 999999999999999999999999999998877899999999999998 5666667778
Q ss_pred CCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHhhcCChhHHHHHhh
Q psy5573 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYF 145 (338)
Q Consensus 80 ~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~~~ll~~ 145 (338)
++++.+|..|.||||+|+.. +.. .. +.||||+|+..+...+..++..
T Consensus 135 a~~~~~d~~g~t~l~~A~~~-~~~-----------------~~-~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 135 ADIEVEDERGLTALELAREI-LKT-----------------TP-KGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp CCTTCCCTTCCCHHHHHHHH-HTT-----------------CC-CSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHHH-Hhc-----------------cC-CCCHHHHHHHcChHHHHHHHHH
Confidence 99999999999999999976 322 24 8999999998777655555544
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=3e-20 Score=170.87 Aligned_cols=110 Identities=27% Similarity=0.289 Sum_probs=91.2
Q ss_pred CCCCCCCC----------CCcHHHHHHH---cCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCH
Q psy5573 2 FSGATINV----------ELTPLCAAVW---DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68 (338)
Q Consensus 2 ~~g~~~n~----------G~t~Lh~A~~---~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~ 68 (338)
++|+|+|. |.||||+|+. .|+.+++++|+++|++++.++ ..|+||||+|+..|+.
T Consensus 153 ~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d-~~g~TpLh~A~~~g~~----------- 220 (497)
T 3lvq_E 153 ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKA-ADGNTALHYAALYNQP----------- 220 (497)
T ss_dssp HTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCC-SSSCCHHHHHTTTTCH-----------
T ss_pred hhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCCH-----------
Confidence 56888762 9999999977 899999999999999999998 8999999999999998
Q ss_pred HHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHh
Q psy5573 69 KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG 132 (338)
Q Consensus 69 ~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~ 132 (338)
+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++. ||+|.+.
T Consensus 221 -~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~-~~~~~~~~Ll~~ga~~~~-------~~~h~~~ 275 (497)
T 3lvq_E 221 -DCLKLLLKGRALVGTVNEAGETALDIARKK-HHKECEELLEQAQAGTFA-------FPLHVDY 275 (497)
T ss_dssp -HHHHHHHHTCCCCSCCCTTCCCHHHHHHHT-TCHHHHHHHHHTCC------------------
T ss_pred -HHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHhCCCCCC-------Ccceeec
Confidence 666667778899999999999999999998 999999999999998755 5777665
No 108
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=4.7e-20 Score=156.58 Aligned_cols=92 Identities=23% Similarity=0.333 Sum_probs=86.2
Q ss_pred CCcHHHHHHHc---CCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccC
Q psy5573 10 ELTPLCAAVWD---NNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKS 86 (338)
Q Consensus 10 G~t~Lh~A~~~---g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~ 86 (338)
|.||||+|+.. |+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|+++|++++.+|
T Consensus 169 g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d-~~g~TpLh~A~~~g~~------------~~v~~Ll~~gad~~~~d 235 (278)
T 1dcq_A 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTALHYCCLTDNA------------ECLKLLLRGKASIEIAN 235 (278)
T ss_dssp TCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCC-TTCCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCC
T ss_pred CCCcchHHHHhcccchHHHHHHHHHCCCCccccC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCCcc
Confidence 99999999999 89999999999999999998 8999999999999998 66666677889999999
Q ss_pred CCCChHHHHHHHhCCCHHHHHHHHhcCCC
Q psy5573 87 ATGFTALHMACRFHDDDSIVRKLLRHGAY 115 (338)
Q Consensus 87 ~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~ 115 (338)
.+|.||||+|+.. ++.+++++|+++|++
T Consensus 236 ~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 236 ESGETPLDIAKRL-KHEHCEELLTQALSG 263 (278)
T ss_dssp TTSCCHHHHHHHT-TCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHc-CCHHHHHHHHHcCCC
Confidence 9999999999998 999999999999874
No 109
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.81 E-value=1.3e-19 Score=134.57 Aligned_cols=109 Identities=23% Similarity=0.153 Sum_probs=89.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCC
Q psy5573 42 LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 121 (338)
Q Consensus 42 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~ 121 (338)
..|.||||+|+..|+. +++++|++.|++++.+|..|+||||+|+.. ++.+++++|+++|++++..+.
T Consensus 5 ~~~~~~l~~A~~~~~~------------~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~d~ 71 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDL------------DEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAPDK 71 (123)
T ss_dssp --CHHHHHHHHHTTCH------------HHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCCCT
T ss_pred cccchHHHHHHHcCCH------------HHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcCCC
Confidence 6789999999999998 555566677889999999999999999998 999999999999999999998
Q ss_pred CCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccHHHHH
Q psy5573 122 KTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRL 164 (338)
Q Consensus 122 ~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 164 (338)
. |.||||+|+..+...+..+|...+.+.+..+..+.++++.+
T Consensus 72 ~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 72 H-HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp T-SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred C-CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 8 99999999987776555555555555566666666666554
No 110
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.80 E-value=1.3e-19 Score=159.29 Aligned_cols=118 Identities=27% Similarity=0.305 Sum_probs=91.2
Q ss_pred CCCCCCCCC------CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHH
Q psy5573 1 MFSGATINV------ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDL 74 (338)
Q Consensus 1 l~~g~~~n~------G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 74 (338)
|++|+|+|. |.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++
T Consensus 220 L~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d-~~G~TpLh~A~~~g~~------------~~v~~ 286 (368)
T 3jue_A 220 LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD-SAGRGPLHHATILGHT------------GLACL 286 (368)
T ss_dssp HHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC-TTSCCHHHHHHHHTCH------------HHHHH
T ss_pred HHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCcH------------HHHHH
Confidence 357888885 8999999999999999999999999999998 8999999999999998 56666
Q ss_pred HHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCC---CCccCCCCCCCHHHHHhh
Q psy5573 75 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY---YNVVDGKTGKTPLLHAGK 133 (338)
Q Consensus 75 Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~ 133 (338)
|+++|++++.+|..|.||||+|+.. ++.+++++|+..+.. ....... +.|+++++..
T Consensus 287 LL~~Gad~~~~d~~G~TpL~~A~~~-g~~~iv~lLl~~~~~~~~~~~~~~~-~~t~l~i~~~ 346 (368)
T 3jue_A 287 FLKRGADLGARDSEGRDPLTIAMET-ANADIVTLLRLAKMREAEAAQGQAG-DETYLDIFRD 346 (368)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHHC----------------------
T ss_pred HHHCcCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCcccccccCCC-CCCHHHHHHH
Confidence 6777899999999999999999998 999999999976532 2333334 7888887753
No 111
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.80 E-value=1.9e-19 Score=130.77 Aligned_cols=86 Identities=30% Similarity=0.357 Sum_probs=65.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCC
Q psy5573 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG 89 (338)
Q Consensus 10 G~t~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g 89 (338)
|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+. +++++|+++|++++.+|..|
T Consensus 24 g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d-~~g~tpLh~A~~~~~~------------~~v~~Ll~~ga~~~~~d~~g 90 (110)
T 2zgd_A 24 LGKKLLEAARAGQDDEVRILMANGADVAAKD-KNGSTPLHLAARNGHL------------EVVKLLLEAGADVXAQDKFG 90 (110)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCC-TTCCCHHHHHHHTTCH------------HHHHHHHHTTCCTTCCCTTS
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCccccccCC
Confidence 7788888888888888888888888877777 7788888888888876 44555555667777778888
Q ss_pred ChHHHHHHHhCCCHHHHHHH
Q psy5573 90 FTALHMACRFHDDDSIVRKL 109 (338)
Q Consensus 90 ~tpLh~A~~~~~~~~~v~~L 109 (338)
.||||+|+.. ++.+++++|
T Consensus 91 ~tpl~~A~~~-~~~~~~~~L 109 (110)
T 2zgd_A 91 KTAFDISIDN-GNEDLAEIL 109 (110)
T ss_dssp CCHHHHHHHH-TCHHHHHHH
T ss_pred CcHHHHHHHc-CCHHHHHHh
Confidence 8888888887 787777766
No 112
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.79 E-value=5e-20 Score=151.39 Aligned_cols=107 Identities=24% Similarity=0.244 Sum_probs=85.3
Q ss_pred CCCCCCCC----CCcHHHHHHHcCCHHHHHHHHhc-CCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Q psy5573 2 FSGATINV----ELTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76 (338)
Q Consensus 2 ~~g~~~n~----G~t~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll 76 (338)
++|+++|. |.||||+|+..|+.+++++|+++ |++++.++ ..|+||||+|+..|+. +++++|+
T Consensus 94 ~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d-~~g~tpL~~A~~~~~~------------~~v~~Ll 160 (222)
T 3ehr_A 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQN-KLGDTALHAAAWKGYA------------DIVQLLL 160 (222)
T ss_dssp HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCC-TTSCCHHHHHHHHTCH------------HHHHHHH
T ss_pred hCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccC-CCCCCHHHHHHHcCCH------------HHHHHHH
Confidence 57889987 99999999999999999999998 99999998 8999999999999998 5566666
Q ss_pred HCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCCC
Q psy5573 77 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 122 (338)
Q Consensus 77 ~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~~ 122 (338)
++|++++.+|..|.||||+|+.. +..++++.|++.++.....+..
T Consensus 161 ~~ga~~~~~~~~g~t~l~~A~~~-~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 161 AKGARTDLRNIEKKLAFDMATNA-ACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp HHTCCSCCCCTTSCCHHHHCCSH-HHHHHHC---------------
T ss_pred HcCCCCccccCCCCCHHHHhcch-hHHHHHHHHhccchhhhccchh
Confidence 77889999999999999999998 9999999999999987766544
No 113
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=5.1e-19 Score=129.62 Aligned_cols=107 Identities=33% Similarity=0.316 Sum_probs=90.3
Q ss_pred cccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCc
Q psy5573 39 KMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 118 (338)
Q Consensus 39 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~ 118 (338)
++ ..|+||||+|+..|+. +++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++.
T Consensus 5 ~d-~~g~t~L~~A~~~~~~------------~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~ 70 (115)
T 2l6b_A 5 GS-KDGNTPLHNAAKNGHA------------EEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNA 70 (115)
T ss_dssp CS-CSSCCHHHHHHHHTCH------------HHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTC
T ss_pred cC-CCCCCHHHHHHHcCCH------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCcc
Confidence 44 8899999999999998 566666677889999999999999999998 999999999999999999
Q ss_pred cCCCCCCCHHHHHhhcCChhHHHHHhhhhhhhhhhcCCCccH
Q psy5573 119 VDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTI 160 (338)
Q Consensus 119 ~~~~~g~tpL~~A~~~~~~~~~~ll~~~~~~~~~~~~~~~~~ 160 (338)
.+.. |.||||+|+..+...+..+|...+.+++..+..+.++
T Consensus 71 ~d~~-g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 71 RSKD-GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp CCTT-CCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred cCCC-CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 9988 9999999998888666666666667666666665544
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.75 E-value=3.6e-18 Score=123.99 Aligned_cols=88 Identities=32% Similarity=0.329 Sum_probs=78.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHHCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHhcCCCCCccCC
Q psy5573 42 LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG 121 (338)
Q Consensus 42 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~~g~~~~~~~~ 121 (338)
.+|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+.. ++.+++++|+++|++++..+.
T Consensus 22 ~~g~t~L~~A~~~g~~------------~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~d~ 88 (110)
T 2zgd_A 22 SDLGKKLLEAARAGQD------------DEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQDK 88 (110)
T ss_dssp CCHHHHHHHHHHHTCH------------HHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCT
T ss_pred CccchHHHHHHHcCCH------------HHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccc
Confidence 7899999999999998 556666677889999999999999999998 999999999999999999998
Q ss_pred CCCCCHHHHHhhcCChhHHHHH
Q psy5573 122 KTGKTPLLHAGKGAREVNTVLL 143 (338)
Q Consensus 122 ~~g~tpL~~A~~~~~~~~~~ll 143 (338)
. |.||||+|+..+...+..+|
T Consensus 89 ~-g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 89 F-GKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp T-SCCHHHHHHHHTCHHHHHHH
T ss_pred C-CCcHHHHHHHcCCHHHHHHh
Confidence 8 99999999988876655554
No 115
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=45.51 E-value=64 Score=28.00 Aligned_cols=51 Identities=20% Similarity=0.380 Sum_probs=41.6
Q ss_pred HHHcCCHHHHHHHHhcCCCCCcccc-------------CCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy5573 17 AVWDNNIRLVEYLLRTGHDVNEKMK-------------LDGRTALFVAVHFNHRHIAALLIHHG 67 (338)
Q Consensus 17 A~~~g~~~~v~~Ll~~g~~~~~~~~-------------~~g~tpLh~A~~~g~~~~v~~Ll~~~ 67 (338)
.+..|+...|+.-+..|.+++.+-+ .-|.|-+|.|+++.+.+++..|+..+
T Consensus 29 gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~~ 92 (454)
T 3zrh_A 29 GVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTEV 92 (454)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhcc
Confidence 4456999999999998887765431 25899999999999999999999754
No 116
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=36.48 E-value=25 Score=18.83 Aligned_cols=17 Identities=18% Similarity=0.112 Sum_probs=10.0
Q ss_pred HHHHHHcCCHHHHHHHH
Q psy5573 14 LCAAVWDNNIRLVEYLL 30 (338)
Q Consensus 14 Lh~A~~~g~~~~v~~Ll 30 (338)
+..||..|+.+.++.|-
T Consensus 17 iyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 34566666666666553
No 117
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=30.02 E-value=1.3e+02 Score=27.01 Aligned_cols=127 Identities=11% Similarity=0.045 Sum_probs=71.0
Q ss_pred CCCCCCC-CCcHHHHHHHcC-C-------------HHHHHHHHhcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Q psy5573 3 SGATINV-ELTPLCAAVWDN-N-------------IRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHG 67 (338)
Q Consensus 3 ~g~~~n~-G~t~Lh~A~~~g-~-------------~~~v~~Ll~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 67 (338)
+|..+|. .++.|..|+..+ . .++++.+.+.|..++... -.+.+...+..|..+-+.
T Consensus 55 ~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t---yn~lI~~~~~~g~~~~A~------ 125 (501)
T 4g26_A 55 NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT---FTNGARLAVAKDDPEMAF------ 125 (501)
T ss_dssp HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH---HHHHHHHHHHHTCHHHHH------
T ss_pred cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH---HHHHHHHHHhcCCHHHHH------
Confidence 3555665 555565555432 1 346666777888776544 245677788888886555
Q ss_pred HHHHHHHHHHCCCCCcccCCCCChHHHH-HHHhCCCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHhhcCC-hhHHH
Q psy5573 68 AKEIVDLLLDNGADVNFKSATGFTALHM-ACRFHDDDSIVRKLL----RHGAYYNVVDGKTGKTPLLHAGKGAR-EVNTV 141 (338)
Q Consensus 68 ~~~~~~~Ll~~g~~~~~~~~~g~tpLh~-A~~~~~~~~~v~~Ll----~~g~~~~~~~~~~g~tpL~~A~~~~~-~~~~~ 141 (338)
++++.+.+.|..++.. -.++|.. .++. |..+-+..++ +.|..++...-. +.+...+..|. +.+..
T Consensus 126 --~l~~~M~~~g~~Pd~~---tyn~lI~~~~~~-g~~~~A~~l~~~M~~~G~~Pd~~ty~---~Li~~~~~~g~~d~A~~ 196 (501)
T 4g26_A 126 --DMVKQMKAFGIQPRLR---SYGPALFGFCRK-GDADKAYEVDAHMVESEVVPEEPELA---ALLKVSMDTKNADKVYK 196 (501)
T ss_dssp --HHHHHHHHTTCCCCHH---HHHHHHHHHHHT-TCHHHHHHHHHHHHHTTCCCCHHHHH---HHHHHHHHTTCHHHHHH
T ss_pred --HHHHHHHHcCCCCccc---eehHHHHHHHHC-CCHHHHHHHHHHHHhcCCCCCHHHHH---HHHHHHhhCCCHHHHHH
Confidence 4455566777766543 2344444 4454 7776554444 466655443311 33444455554 55555
Q ss_pred HHhhhh
Q psy5573 142 LLYFIN 147 (338)
Q Consensus 142 ll~~~~ 147 (338)
++....
T Consensus 197 ll~~Mr 202 (501)
T 4g26_A 197 TLQRLR 202 (501)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 118
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.46 E-value=1.7e+02 Score=26.17 Aligned_cols=95 Identities=15% Similarity=0.020 Sum_probs=57.3
Q ss_pred CCCCCCC-C-CcHHHHHHHcCCHHHHHHHH----hcCCCCCccccCCCCcHHHHHHHcCCHHHHHHHHHcCHHHHHHHHH
Q psy5573 3 SGATINV-E-LTPLCAAVWDNNIRLVEYLL----RTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76 (338)
Q Consensus 3 ~g~~~n~-G-~t~Lh~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~Ll 76 (338)
.|..+|. . .+.+...+..|+.+.+..++ +.|..++... -.+.+...++.|..+-+. ++.+.+.
T Consensus 99 ~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t---yn~lI~~~~~~g~~~~A~--------~l~~~M~ 167 (501)
T 4g26_A 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS---YGPALFGFCRKGDADKAY--------EVDAHMV 167 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH---HHHHHHHHHHTTCHHHHH--------HHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce---ehHHHHHHHHCCCHHHHH--------HHHHHHH
Confidence 4566666 3 34455666778876655555 4677766544 245566778888876555 4555667
Q ss_pred HCCCCCcccCCCCChHHHHHHHhCCCHHHHHHHHh
Q psy5573 77 DNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 111 (338)
Q Consensus 77 ~~g~~~~~~~~~g~tpLh~A~~~~~~~~~v~~Ll~ 111 (338)
+.|..++.. -.+.|.-++...|..+-+..+++
T Consensus 168 ~~G~~Pd~~---ty~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 168 ESEVVPEEP---ELAALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HTTCCCCHH---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCCCHH---HHHHHHHHHhhCCCHHHHHHHHH
Confidence 788766643 23444444433487776655554
Done!