RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5573
(338 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 90.5 bits (225), Expect = 2e-22
Identities = 56/133 (42%), Positives = 71/133 (53%), Gaps = 16/133 (12%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A + ++ +V+ LL G DVN K DGRT L +A H EI
Sbjct: 9 TPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGH------------LEI 55
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
V LLL+ GADVN + G T LH+A R + D +V+ LL+HGA N D K G+TPL A
Sbjct: 56 VKLLLEKGADVNARDKDGNTPLHLAARNGNLD-VVKLLLKHGADVNARD-KDGRTPLHLA 113
Query: 132 -GKGAREVNTVLL 143
G EV +LL
Sbjct: 114 AKNGHLEVVKLLL 126
Score = 66.6 bits (163), Expect = 1e-13
Identities = 38/89 (42%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
DGRT L +A H E+V LLL+NGADVN K G T LH+A + +
Sbjct: 6 DGRTPLHLAASNGHL------------EVVKLLLENGADVNAKDNDGRTPLHLAAK-NGH 52
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
IV+ LL GA N D K G TPL A
Sbjct: 53 LEIVKLLLEKGADVNARD-KDGNTPLHLA 80
Score = 42.0 bits (99), Expect = 6e-05
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 83 NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTV 141
N + G T LH+A + +V+ LL +GA N D G+TPL A G E+ +
Sbjct: 1 NARDEDGRTPLHLAAS-NGHLEVVKLLLENGADVNAKD-NDGRTPLHLAAKNGHLEIVKL 58
Query: 142 LLYFINEIFKLMANNDT 158
LL ++ + +T
Sbjct: 59 LLEKGADVNARDKDGNT 75
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 78.1 bits (193), Expect = 3e-18
Identities = 43/107 (40%), Positives = 55/107 (51%), Gaps = 16/107 (14%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVD 73
L A + N+ LV+ LL G DVN TAL +A + EIV
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGN------------LEIVK 45
Query: 74 LLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 120
LLL++GADVN K G TALH+A R + + IV+ LL HGA N+ D
Sbjct: 46 LLLEHGADVNAKDKDGNTALHLAARNGNLE-IVKLLLEHGADINLKD 91
Score = 55.7 bits (135), Expect = 3e-10
Identities = 33/84 (39%), Positives = 44/84 (52%), Gaps = 15/84 (17%)
Query: 4 GATINV--ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAA 61
GA +N+ T L A + N+ +V+ LL G DVN K K DG TAL +A +
Sbjct: 20 GADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDK-DGNTALHLAARNGN----- 73
Query: 62 LLIHHGAKEIVDLLLDNGADVNFK 85
EIV LLL++GAD+N K
Sbjct: 74 -------LEIVKLLLEHGADINLK 90
Score = 53.0 bits (128), Expect = 3e-09
Identities = 34/74 (45%), Positives = 42/74 (56%), Gaps = 7/74 (9%)
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 117
H+AA +G E+V LLL+ GADVN TALH+A R + + IV+ LL HGA N
Sbjct: 2 HLAAK---NGNLELVKLLLEKGADVNLGDTD--TALHLAAR-NGNLEIVKLLLEHGADVN 55
Query: 118 VVDGKTGKTPLLHA 131
D K G T L A
Sbjct: 56 AKD-KDGNTALHLA 68
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 63.9 bits (156), Expect = 3e-11
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 20 DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79
+ + V LL G DVN + + G+T L + +H++ K+IV LLL+ G
Sbjct: 24 NVTVEEVRRLLAAGADVNFRGEY-GKTPLHLYLHYSS---------EKVKDIVRLLLEAG 73
Query: 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
ADVN GFT LH+ +++ L++ GA N D K G+TPL
Sbjct: 74 ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKD-KVGRTPL 121
Score = 56.6 bits (137), Expect = 6e-09
Identities = 46/151 (30%), Positives = 66/151 (43%), Gaps = 21/151 (13%)
Query: 4 GATINVE----LTPL--CAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHR 57
GA +N + TPL + ++ N +++ LLR G DVN + L G T L
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-LDLYGMTPL--------- 156
Query: 58 HIAALLIHHGAK-EIVDLLLDNGADVNFKSATGFTALH-MACRFHDDDSIVRKLLRHGAY 115
A LL A E++ LL+D GADV + LH F IVR+L+R G
Sbjct: 157 --AVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCD 214
Query: 116 YNVVDGKTGKTPLLHAGKGAREVNTVLLYFI 146
D G TPL G+ +++L +
Sbjct: 215 PAATD-MLGNTPLHSMATGSSCKRSLVLPLL 244
Score = 51.2 bits (123), Expect = 3e-07
Identities = 39/122 (31%), Positives = 55/122 (45%), Gaps = 19/122 (15%)
Query: 12 TPLCAAV---WDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68
TPL + + +V LL G DVN + G T L L +++
Sbjct: 49 TPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERC-GFTPLH------------LYLYNAT 95
Query: 69 KE-IVDLLLDNGADVNFKSATGFTALHMACR-FHDDDSIVRKLLRHGAYYNVVDGKTGKT 126
++ LL+ GADVN K G T LH+ F+ + ++R LLR GA N +D G T
Sbjct: 96 TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALD-LYGMT 154
Query: 127 PL 128
PL
Sbjct: 155 PL 156
Score = 40.8 bits (96), Expect = 8e-04
Identities = 40/168 (23%), Positives = 58/168 (34%), Gaps = 32/168 (19%)
Query: 4 GATINVELTPLCAAVWDNN--IRLVEYLLRTGHDVNEKMKLDGRTAL---FVAVHFNHRH 58
A +TPL + N + L+ L+ G DV R+ L + R
Sbjct: 146 NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV-DDRFRSLLHHHLQSFKPRARI 204
Query: 59 IAALL----------------IHHGAKE------IVDLLLDNGADVNFKSATGFTALHMA 96
+ L+ +H A +V LL G +N ++ G T LH A
Sbjct: 205 VRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYA 264
Query: 97 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA--GKGAREVNTVL 142
F ++ R+L+ GA N V G TPL R V L
Sbjct: 265 AVF-NNPRACRRLIALGADINAVS-SDGNTPLSLMVRNNNGRAVRAAL 310
Score = 31.1 bits (71), Expect = 0.82
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Query: 3 SGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
+G +IN TPL A NN R L+ G D+N + DG T L + V N+
Sbjct: 246 AGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN-AVSSDGNTPLSLMVRNNNGR 304
Query: 59 IAALLIH 65
+
Sbjct: 305 AVRAALA 311
Score = 30.8 bits (70), Expect = 1.1
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 14/87 (16%)
Query: 25 LVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNF 84
LV LL G +N + + G+T L A FN+ L+ GAD+N
Sbjct: 239 LVLPLLIAGISINARNRY-GQTPLHYAAVFNN------------PRACRRLIALGADINA 285
Query: 85 KSATGFTALHMACRFHDDDSIVRKLLR 111
S+ G T L + R +++ VR L
Sbjct: 286 VSSDGNTPLSLMVR-NNNGRAVRAALA 311
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 53.9 bits (130), Expect = 4e-08
Identities = 37/137 (27%), Positives = 54/137 (39%), Gaps = 28/137 (20%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGR-TALFVAVHFNHRH---IAALLIHHG 67
PL A NI +V+ LL G D+N K + + +N I LL+ +G
Sbjct: 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYG 96
Query: 68 A-----------------------KEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDD 103
A IV+ LLDNGA+VN K++ G LH+ D
Sbjct: 97 ANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDL 156
Query: 104 SIVRKLLRHGAYYNVVD 120
I++ L+ G N +
Sbjct: 157 KILKLLIDKGVDINAKN 173
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 54.1 bits (130), Expect = 5e-08
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 23/160 (14%)
Query: 8 NVELTPLCAAVWDNNI--RLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIH 65
++L + D+ I + + LL G D+N K + G TAL A + + LL+
Sbjct: 130 TIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLS 189
Query: 66 HGA---------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDS 104
+GA K IV +LL+NGA + + G T LH++ + D
Sbjct: 190 YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYD 249
Query: 105 IVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLY 144
I++ LL HG N G T L + K R++ +L Y
Sbjct: 250 ILKLLLEHGVDVNAKSYILGLTALHSSIKSERKLKLLLEY 289
Score = 33.7 bits (77), Expect = 0.14
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 12 TPLCAAV-WDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
TPL +V + + +++ LL G DVN K + G TAL ++ ++
Sbjct: 236 TPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSIK--------------SER 281
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
+ LLL+ GAD+N ++ T L A + + +I R L+ +
Sbjct: 282 KLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILISN 323
Score = 33.3 bits (76), Expect = 0.17
Identities = 33/144 (22%), Positives = 51/144 (35%), Gaps = 29/144 (20%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAV-HFNHRHIAALL------ 63
PL AV N+ +V+ LL GH+VN+ T L + N + ++
Sbjct: 38 FIPLHQAVEARNLDVVKSLLTRGHNVNQPDH-RDLTPLHIICKEPNKLGMKEMIRSINKC 96
Query: 64 ------------IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI----VR 107
++ EI ++L N L + DD I +
Sbjct: 97 SVFYTLVAIKDAFNNRNVEIFKIILTNRYKNIQTID-----LVYIDKKSKDDIIEAEITK 151
Query: 108 KLLRHGAYYNVVDGKTGKTPLLHA 131
LL +GA N+ D G T L +A
Sbjct: 152 LLLSYGADINMKDRHKGNTALHYA 175
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 49.1 bits (116), Expect = 8e-07
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 65 HHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD----SIVRKLLRHGAYY--NV 118
G +IV LLL +GADVN K A G T LH+A + + + LL GA N
Sbjct: 82 SKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN 141
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLL 143
+ + G TPL A G ++ +LL
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLL 167
Score = 46.7 bits (110), Expect = 5e-06
Identities = 45/136 (33%), Positives = 58/136 (42%), Gaps = 13/136 (9%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
PL +A + ++V+ LL +G DVN K DG T L +A + G E
Sbjct: 74 RLPLHSAASKGDDKIVKLLLASGADVNAKDA-DGDTPLHLAALNGNPPE-------GNIE 125
Query: 71 IVDLLLDNGA---DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP 127
+ LLL+ GA N + G T LH A + D IV LL GA N + G T
Sbjct: 126 VAKLLLEAGADLDVNNLRDEDGNTPLHWAA-LNGDADIVELLLEAGADPNSRN-SYGVTA 183
Query: 128 LLHAGKGAREVNTVLL 143
L A K R LL
Sbjct: 184 LDPAAKNGRIELVKLL 199
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 43.8 bits (104), Expect = 2e-06
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLI 64
T L A + LV+YLL G D+N + DG TAL +A + + LL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTDE-DGNTALHIAAENGNLEVLKLLL 54
Score = 38.8 bits (91), Expect = 1e-04
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 103
GRTAL A E+V LL+ G D+N G TALH+A + +
Sbjct: 1 GRTALHKAAISGR------------LELVKYLLEKGVDINRTDEDGNTALHIAAENGNLE 48
Query: 104 SIVRKLL 110
+++ LL
Sbjct: 49 -VLKLLL 54
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 47.7 bits (113), Expect = 5e-06
Identities = 37/120 (30%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--- 68
TPL A+ + ++VE ++ G D+N + L A+ I LLI +G
Sbjct: 37 TPLIDAIRSGDAKIVELFIKHGADINH-INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTS 95
Query: 69 --------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 120
K+++ +LD G DVN K A T LH A + D +SI + L +GA N+ D
Sbjct: 96 ILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESI-KMLFEYGADVNIED 154
Score = 39.2 bits (91), Expect = 0.002
Identities = 36/120 (30%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A+ ++ ++ L G DVN + +G + HIA I H +I
Sbjct: 126 TFLHYAIKKGDLESIKMLFEYGADVNIE-DDNGCYPI---------HIA---IKHNFFDI 172
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ LLL+ GA N K G + LH A + D + ++ L+ HG + + K G TPL +A
Sbjct: 173 IKLLLEKGAYANVKDNNGESPLHNAAEY-GDYACIKLLIDHGNHI-MNKCKNGFTPLHNA 230
Score = 39.2 bits (91), Expect = 0.002
Identities = 39/170 (22%), Positives = 67/170 (39%), Gaps = 30/170 (17%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA NV+ +PL A + ++ L+ G+ + K K +G T L A+ N R
Sbjct: 180 GAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCK-NGFTPLHNAIIHN-RSA 237
Query: 60 AALLI----------------HHG-----AKEIVDLLLDNGADVNFKSATGFTALHMACR 98
LLI HH +I+D+LL + AD++ K G + A +
Sbjct: 238 IELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAFK 297
Query: 99 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINE 148
+ + D +++ ++ + D L H ++ N FI E
Sbjct: 298 YINKDPVIKDIIANAVLIKEADKLKDSDFLEH--IEIKD-NKEFSDFIKE 344
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 46.5 bits (110), Expect = 9e-06
Identities = 38/133 (28%), Positives = 59/133 (44%), Gaps = 15/133 (11%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+ L AV + +++ VE LL G ++ DG T L +A +I
Sbjct: 70 SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKL------------DI 117
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ LL+ GAD + + F+ LH+A D I L+ H A ++ D G TPL+ A
Sbjct: 118 MKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGI-ELLIDHKACLDIEDC-CGCTPLIIA 175
Query: 132 -GKGAREVNTVLL 143
KG + +LL
Sbjct: 176 MAKGDIAICKMLL 188
Score = 36.9 bits (85), Expect = 0.014
Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 55 NHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
+ I G +I LLD G + NF+ G + + +A +F D ++I + L++HGA
Sbjct: 1 MDQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI-KLLMKHGA 59
Query: 115 YYNVVDGKTGKTPLLHAGKGAREVNTVLLY----FINEIFKLMANND---TTILDRLDEM 167
+ V ++ L A + L F +++F TIL +LD M
Sbjct: 60 IPD-VKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIM 118
Query: 168 KSLI 171
K LI
Sbjct: 119 KLLI 122
Score = 35.4 bits (81), Expect = 0.038
Identities = 39/154 (25%), Positives = 62/154 (40%), Gaps = 30/154 (19%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK---- 69
LC A+ + + LL G + N ++ DG + + +A+ F LL+ HGA
Sbjct: 6 LCDAILFGELDIARRLLDIGINPNFEI-YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVK 64
Query: 70 -----------------EIVDLLLDNGA---DVNFKSATGFTALHMACRFHDDDSIVRKL 109
+ V+ LLD G DV +K G T LH+A D I++ L
Sbjct: 65 YPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKD--GMTPLHLATILKKLD-IMKLL 121
Query: 110 LRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143
+ GA ++ T K LH ++ + L
Sbjct: 122 IARGADPDI--PNTDKFSPLHLAVMMGDIKGIEL 153
Score = 31.9 bits (72), Expect = 0.46
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 22/130 (16%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA-- 68
+TPL A + +++ L+ G D + D + L +AV LLI H A
Sbjct: 103 MTPLHLATILKKLDIMKLLIARGADPDIP-NTDKFSPLHLAVMMGDIKGIELLIDHKACL 161
Query: 69 -------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL 109
I +LLD+GA++++ G A ++ IVR
Sbjct: 162 DIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLF 221
Query: 110 LRHGAYYNVV 119
++ GA N++
Sbjct: 222 IKRGADCNIM 231
Score = 29.2 bits (65), Expect = 3.6
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 5 ATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIA 60
A +++E TPL A+ +I + + LL +G +++ K AL A+ N I
Sbjct: 159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV 218
Query: 61 ALLIHHGA 68
L I GA
Sbjct: 219 RLFIKRGA 226
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 46.0 bits (109), Expect = 2e-05
Identities = 35/85 (41%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+LL GAD N + G T LH+AC + +VR LL GA ++D K GKTPL A
Sbjct: 98 ARILLTGGADPNCRDYDGRTPLHIAC-ANGHVQVVRVLLEFGADPTLLD-KDGKTPLELA 155
Query: 132 GK-GAREVNTVLLYFINEIFKLMAN 155
+ G REV +L F+L AN
Sbjct: 156 EENGFREVVQLLSRHSQCHFELGAN 180
Score = 36.4 bits (84), Expect = 0.018
Identities = 34/106 (32%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 7 INVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
+ VEL L A+ R+ LL G D N + DGRT L HIA H
Sbjct: 82 LTVELCQLAASGDAVGARI---LLTGGADPNCR-DYDGRTPL---------HIACANGHV 128
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
+V +LL+ GAD G T L +A + +V+ L RH
Sbjct: 129 Q---VVRVLLEFGADPTLLDKDGKTPLELAEE-NGFREVVQLLSRH 170
>gnl|CDD|222954 PHA02989, PHA02989, ankyrin repeat protein; Provisional.
Length = 494
Score = 44.3 bits (105), Expect = 6e-05
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 33/138 (23%)
Query: 23 IRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA-------------- 68
+E+LLRTG DVNE+ + + L++ I LLI +GA
Sbjct: 16 KNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGYIETPLCA 75
Query: 69 ------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD----SIVRKLLRH 112
K+IV LLL GAD+N K+ G + + C ++ + ++R LL
Sbjct: 76 VLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPI--VCFIYNSNINNCDMLRFLLSK 133
Query: 113 GAYYNVVDGKTGKTPLLH 130
G N V G LLH
Sbjct: 134 GINVNDVKNSRGYN-LLH 150
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 42.4 bits (99), Expect = 3e-04
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 17/145 (11%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N + TP+ A NN+ ++ LL G D+ E + TAL A+ + ++
Sbjct: 365 GANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADI-EALSQKIGTALHFALCGTNPYM 423
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
+ V L+D GA+VN K+ T LH AC+ + ++ LL +GA N +
Sbjct: 424 S-----------VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI 472
Query: 120 DGKTGKTPLLHAGKGAREVNTVLLY 144
+ + + PLL A + VN +L Y
Sbjct: 473 NIQN-QYPLLIALEYHGIVNILLHY 496
Score = 37.7 bits (87), Expect = 0.009
Identities = 49/148 (33%), Positives = 65/148 (43%), Gaps = 19/148 (12%)
Query: 2 FSGATINV-ELTPLCAAVWDNNI-RLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
FS +I+ + TPL A ++ RLV LL G DVN K + G T L+
Sbjct: 264 FSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAK-NIKGETPLY---------- 312
Query: 60 AALLIHHG-AKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 118
L+ +G E + L+ GADVN T LH A + IV LL GA N
Sbjct: 313 --LMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA 370
Query: 119 VDGKTGKTPLLHAG--KGAREVNTVLLY 144
D KTP+ +A +NT+L Y
Sbjct: 371 RD-YCDKTPIHYAAVRNNVVIINTLLDY 397
Score = 36.2 bits (83), Expect = 0.021
Identities = 44/159 (27%), Positives = 62/159 (38%), Gaps = 23/159 (14%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N + +TP+ A N ++V LL G DVN + LD + L AV +
Sbjct: 168 GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN-IIALDDLSVLECAVDSKNIDT 226
Query: 60 AALLIHHGAK-----------------EIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
+I + + E LL D G VN T LH A +
Sbjct: 227 IKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSL 286
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTV 141
+V KLL GA N + K G+TPL K + +
Sbjct: 287 SRLVPKLLERGADVNAKNIK-GETPLYLMAKNGYDTENI 324
Score = 34.7 bits (79), Expect = 0.066
Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 21 NNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGA 80
+ + + E LL G DVN K + T + H AA G ++V+LLL GA
Sbjct: 156 DELLIAEMLLEGGADVNAK-DIYCITPI---------HYAA---ERGNAKMVNLLLSYGA 202
Query: 81 DVNFKSATGFTALHMACRFHDDDSI 105
DVN + + L A + D+I
Sbjct: 203 DVNIIALDDLSVLECAVDSKNIDTI 227
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 37.3 bits (87), Expect = 4e-04
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 75 LLDNG-ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
LL++G D+N G T LH+A ++ + +V+ LL+ G N+ D G T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALE-LVQWLLKPGVDLNLRD-SDGLTALDLA 56
Score = 35.4 bits (82), Expect = 0.002
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 12/68 (17%)
Query: 29 LLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88
LL G +G T L H+AA +GA E+V LL G D+N + +
Sbjct: 1 LLEHGPIDLNATDGNGNTPL---------HLAA---KYGALELVQWLLKPGVDLNLRDSD 48
Query: 89 GFTALHMA 96
G TAL +A
Sbjct: 49 GLTALDLA 56
Score = 32.3 bits (74), Expect = 0.031
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVA 51
TPL A + LV++LL+ G D+N + DG TAL +A
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDLNLRDS-DGLTALDLA 56
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 40.2 bits (94), Expect = 0.001
Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 38/215 (17%)
Query: 12 TPLCAAV-----WDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
TPLC + + + + +V+ L+ G D+N+K DG T L+ + + +
Sbjct: 73 TPLCTILSNIKDYKHMLDIVKILIENGADINKK-NSDGETPLYCLLSNGYIN-------- 123
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTAL--HMACRFHDDDSIVRKLLRHGAYYNVVDGKTG 124
EI+ +++NGAD GFT L ++ H D I++ LL G N + K
Sbjct: 124 -NLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEK 182
Query: 125 KTPL-LHAGKGAREVNT-VLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGD 182
L + ++ +L F++ F + N + ++ + SL+
Sbjct: 183 YDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLL----------- 231
Query: 183 YNNFSLLKVAKNDAGETILDIFFELIGKNDTTILD 217
Y+N + KN ILD F I N L
Sbjct: 232 YDN---KRFKKN-----ILDFIFSYIDINQVDELG 258
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 35.6 bits (83), Expect = 0.001
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 120
G T LH+A R + +V+ LL GA N D
Sbjct: 2 GNTPLHLAAR-NGHLEVVKLLLEAGADVNARD 32
Score = 35.2 bits (82), Expect = 0.001
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 12/43 (27%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFK 85
DG T L H+AA +G E+V LLL+ GADVN +
Sbjct: 1 DGNTPL---------HLAA---RNGHLEVVKLLLEAGADVNAR 31
Score = 30.6 bits (70), Expect = 0.064
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMK 41
TPL A + ++ +V+ LL G DVN + K
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 36.0 bits (83), Expect = 0.013
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 10/93 (10%)
Query: 22 NIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD 81
N+ ++++L+ G DVN K + + +AL + FN + EI+ +L+D+G+
Sbjct: 65 NVEILKFLIENGADVNFKTRDNNLSALHHYLSFNK---------NVEPEILKILIDSGSS 115
Query: 82 VNFKSATGFTALHM-ACRFHDDDSIVRKLLRHG 113
+ + G LHM C F+ ++++ L+ G
Sbjct: 116 ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG 148
Score = 34.4 bits (79), Expect = 0.051
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Query: 69 KEIVDLLLDNGADVNFKS-ATGFTALHMACRFHDDDS--IVRKLLRHGAYYNVVDGKTGK 125
EI+ L++NGADVNFK+ +ALH F+ + I++ L+ G+ D + GK
Sbjct: 66 VEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEED-EDGK 124
Query: 126 TPL 128
L
Sbjct: 125 NLL 127
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to
24 repeated units, and it mediates most of the
protein's binding activities.
Length = 30
Score = 31.5 bits (72), Expect = 0.035
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 12/41 (29%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVN 83
DG T L +A + E+V LLL++GAD+N
Sbjct: 1 DGNTPLHLAARNGN------------LELVKLLLEHGADIN 29
Score = 29.5 bits (67), Expect = 0.18
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 89 GFTALHMACRFHDDDSIVRKLLRHGAYYNV 118
G T LH+A R + + +V+ LL HGA N
Sbjct: 2 GNTPLHLAAR-NGNLELVKLLLEHGADINA 30
Score = 26.8 bits (60), Expect = 1.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVN 37
TPL A + N+ LV+ LL G D+N
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGADIN 29
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 35.8 bits (83), Expect = 0.036
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDV------NEKMKLDGRTALFVAVHFNHR-HIAALLI 64
T L A N +V+ LL G V + +K G + + H + AA L
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY---HGESPLNAAACL- 185
Query: 65 HHGAKEIVDLLLDNGADVNFKSATGFTALHMA 96
G+ IV LL ++ AD+ + G T LH+
Sbjct: 186 --GSPSIVALLSEDPADILTADSLGNTLLHLL 215
Score = 31.2 bits (71), Expect = 0.93
Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 13/58 (22%)
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 115
H+A H EIV LLL+ GA V ++ F HG
Sbjct: 133 HLA---AHRQNYEIVKLLLERGASVPARACGDF------FVKSQG----VDSFYHGES 177
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 35.2 bits (81), Expect = 0.051
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68
LC A N++ ++ LL+ G +V+ + G TAL VA+ +H + LLI +GA
Sbjct: 626 LCTAAKRNDLTAMKELLKQGLNVDSEDH-QGATALQVAMAEDHVDMVRLLIMNGA 679
Score = 31.0 bits (70), Expect = 1.0
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 67 GAKEIVDLLLDNGADVNFKSATGFTALHMAC-RFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
G +++ LL D + + G T LH+A + ++D +V LL+H ++ D G
Sbjct: 536 GNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLV--LLKHACNVHIRDAN-GN 592
Query: 126 TPLLHA 131
T L +A
Sbjct: 593 TALWNA 598
Score = 28.3 bits (63), Expect = 8.3
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 22 NIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD 81
N L+E LL+ D + GRT L +A G ++ V +LL + +
Sbjct: 537 NAALLEELLKAKLDPDIG-DSKGRTPLHIAA------------SKGYEDCVLVLLKHACN 583
Query: 82 VNFKSATGFTAL 93
V+ + A G TAL
Sbjct: 584 VHIRDANGNTAL 595
Score = 27.9 bits (62), Expect = 9.8
Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 21/122 (17%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIH------ 65
TPL A V LL+ +V+ + +G TAL+ A+ H I +L H
Sbjct: 560 TPLHIAASKGYEDCVLVLLKHACNVHIR-DANGNTALWNAISAKHHKIFRILYHFASISD 618
Query: 66 -HGAKEIV-------DL-----LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
H A +++ DL LL G +V+ + G TAL +A D +VR L+ +
Sbjct: 619 PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMA-EDHVDMVRLLIMN 677
Query: 113 GA 114
GA
Sbjct: 678 GA 679
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 30.6 bits (70), Expect = 0.075
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 89 GFTALHMACRFHDDDSIVRKLLRHGA 114
G T LH+A + + +V+ LL GA
Sbjct: 2 GRTPLHLAAE-NGNLEVVKLLLDKGA 26
Score = 30.2 bits (69), Expect = 0.11
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAK 69
DGRT L +A + + LL+ GA
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLLDKGAD 27
Score = 28.3 bits (64), Expect = 0.39
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNE 38
TPL A + N+ +V+ LL G D+N
Sbjct: 4 TPLHLAAENGNLEVVKLLLDKGADINA 30
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 33.1 bits (75), Expect = 0.22
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 18/109 (16%)
Query: 24 RLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVN 83
R VE LL G+ NE DG L +A N+ I A+L+ HGA N D
Sbjct: 53 RFVEELLHRGYSPNETDD-DGNYPLHIASKINNNRIVAMLLTHGADP-------NACDKQ 104
Query: 84 FKSATGFTALHMACRFHDDDSIVRK---LLRHGAYYNVVDGKTGKTPLL 129
K+ + + DD ++ + L+++GA N + G PLL
Sbjct: 105 HKTPLYYLS-------GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL 146
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 32.7 bits (74), Expect = 0.31
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
+ + + +V LLL++G+DVN +S G+T + +A + +++ LL H
Sbjct: 460 VRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCH 508
>gnl|CDD|222925 PHA02743, PHA02743, Viral ankyrin protein; Provisional.
Length = 166
Score = 31.3 bits (71), Expect = 0.38
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 21 NNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGA 80
N + +E L+ G D+N + G T L +A + +A L L ++ GA
Sbjct: 71 NAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCR-------QLGVNLGA 123
Query: 81 DVNFKSATGFTALHMACRFHDDDSIVRKLLR-HGAYYN 117
+N++ TA H+A + D + ++LR +GA +
Sbjct: 124 -INYQHE---TAYHIAYKMRDRR--MMEILRANGAVCD 155
Score = 28.2 bits (63), Expect = 4.0
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 17/81 (20%)
Query: 28 YLLRTGHDVNEKMKLDGRTALFVAV--HFNHR---------HIAALLIHHGAKEIVDLLL 76
+ RTG ++ E M++ A F++ H HR H+ A A ++LL+
Sbjct: 26 RICRTG-NIYELMEV----APFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLV 80
Query: 77 DNGADVNFK-SATGFTALHMA 96
+ GAD+N + TG T LH+A
Sbjct: 81 NMGADINARELGTGNTLLHIA 101
>gnl|CDD|165212 PHA02884, PHA02884, ankyrin repeat protein; Provisional.
Length = 300
Score = 31.9 bits (72), Expect = 0.45
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 6 TINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIH 65
+ N + PL A+ +N + L+R G DVN + T L+++V
Sbjct: 66 SENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISV------------L 113
Query: 66 HGAKEIVDLLLDNGADVNFKSATGFTALHMACR 98
HG + +++LL GAD+N ++ T + +A
Sbjct: 114 HGCLKCLEILLSYGADINIQTNDMVTPIELALM 146
>gnl|CDD|233282 TIGR01130, ER_PDI_fam, protein disulfide isomerase, eukaryotic.
This model represents eukaryotic protein disulfide
isomerases retained in the endoplasmic reticulum (ER)
and closely related forms. Some members have been
assigned alternative or additional functions such as
prolyl 4-hydroxylase and
dolichyl-diphosphooligosaccharide-protein
glycotransferase. Members of this family have at least
two protein-disulfide domains, each similar to
thioredoxin but with the redox-active disulfide in the
motif PWCGHCK, and an ER retention signal at the extreme
C-terminus (KDEL, HDEL, and similar motifs).
Length = 462
Score = 31.9 bits (73), Expect = 0.49
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 122 KTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPG 181
+ PL+ G T YF + ++ N LD +E+++ LE K+F
Sbjct: 212 RAESLPLV----GEFTQETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEAAKKFRGK 267
Query: 182 DYN 184
N
Sbjct: 268 FVN 270
>gnl|CDD|206145 pfam13975, gag-asp_proteas, gag-polyprotein putative aspartyl
protease. This family of putative aspartyl proteases is
found pre-dominantly in retroviral proteins.
Length = 72
Score = 28.4 bits (64), Expect = 0.91
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 107
V L+D GA +F S + L + S VR
Sbjct: 20 VKALVDTGATHSFISESLAARLGLPLEADQAPSRVR 55
>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional.
Length = 169
Score = 29.6 bits (66), Expect = 1.4
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 23 IRLVEYLLRTGHDVNEKMKLDGRTALFVAVH 53
++++L+ G D+N + L+G TAL +A H
Sbjct: 77 AEIIDHLIELGADINAQEMLEGDTALHLAAH 107
Score = 29.6 bits (66), Expect = 1.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 68 AKEIVDLLLDNGADVNFK-SATGFTALHMACRFHDDDSIVRKLLRH 112
A EI+D L++ GAD+N + G TALH+A D D + L
Sbjct: 76 AAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHD-LAEWLCCQ 120
>gnl|CDD|165157 PHA02795, PHA02795, ankyrin-like protein; Provisional.
Length = 437
Score = 29.6 bits (66), Expect = 2.6
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 13/62 (20%)
Query: 35 DVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALH 94
D+N+ + GRT L+ A I+ G ++V LL+NGA+VN + G+T L
Sbjct: 213 DINQ-LDAGGRTLLYRA------------IYAGYIDLVSWLLENGANVNAVMSNGYTCLD 259
Query: 95 MA 96
+A
Sbjct: 260 VA 261
>gnl|CDD|111994 pfam03158, DUF249, Multigene family 530 protein. Members of this
family are multigene family 530 proteins from African
swine fever viruses. These proteins may be involved in
promoting survival of infected macrophages.
Length = 192
Score = 28.8 bits (65), Expect = 2.8
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 29 LLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHH 66
L+ G +VN L AV +NHR I I
Sbjct: 162 TLKYGGNVN-------PIVLSQAVKYNHRKILDYFIRQ 192
>gnl|CDD|233627 TIGR01899, cas_TM1807_csm5, CRISPR type III-A/MTUBE-associated RAMP
protein Csm5. CRISPR is a term for Clustered Regularly
Interspaced Short Palidromic Repeats. A number of
protein families appear only in association with these
repeats and are designated Cas (CRISPR associated)
proteins. Members of this cas gene family are found in
the mtube subtype of CRISPR/cas locus and designated
Csm5, for CRISPR/cas Subtype Mtube, protein 5 [Mobile
and extrachromosomal element functions, Other].
Length = 365
Score = 29.4 bits (66), Expect = 3.0
Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 221 EMKSIKLELTKAFGPGD-YNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANN 279
E+K + + P + N +LK+ N E L+ + EE K NN
Sbjct: 232 ELKRGLDRKKQFYAPSEGENKLEILKIACNHFKEEFLEFVLAKSNKAYEEFRKLEKKLNN 291
Query: 280 DTTILDRL 287
D L+ L
Sbjct: 292 DNGDLEIL 299
>gnl|CDD|227481 COG5152, COG5152, Uncharacterized conserved protein, contains RING
and CCCH-type Zn-fingers [General function prediction
only].
Length = 259
Score = 28.5 bits (63), Expect = 4.5
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 268 EELEKKLADANNDTTILDRLD-EMKSLILEGTKEFGPGDYNNFSLLKVAKND-AGETILG 325
E+L+K N+D+T D L+ E K L + K P D N L KN + I
Sbjct: 69 EDLDKYTLTVNDDSTKEDLLNFERKELAEKAKKRR-PSDDNELVLNMSGKNKRLTKQINQ 127
Query: 326 PTMIQ 330
PTM +
Sbjct: 128 PTMFR 132
>gnl|CDD|222430 pfam13874, Nup54, Nucleoporin complex subunit 54. This is the
human Nup54 subunit of the nucleoporin complex,
equivalent to Nup57 of yeast. Nup54, Nup58 and Nup62 all
have similar affinities for importin-beta. It seems
likely that they are the only FG-repeat nucleoporins of
the central channel, and as such they would form a zone
of equal affinity spanning the central channel. The
diffusion of importin-beta import complexes through the
central channel may be a stochastic process as the
affinities are similar, whereas movement from
cytoplasmic fibrils to the central channel and from the
central channel to the nuclear basket would be
facilitated by the subtle differences in affinity
between them.
Length = 141
Score = 28.0 bits (63), Expect = 4.8
Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 210 KNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKRGFPLL-- 267
K+D R++E K EL+ LLK+ L+I + +G+PL
Sbjct: 65 KHDLETSARIEEAKRRHTELSHR----------LLKLA------AKLEILRNKGYPLSPE 108
Query: 268 -EELEKKLADANNDTTILDRLDEMKSL 293
EEL KL +L L++ L
Sbjct: 109 EEELRNKLE------QLLKELNDPAQL 129
>gnl|CDD|147995 pfam06128, Shigella_OspC, Shigella flexneri OspC protein. This
family consists of the Shigella flexneri specific
protein OspC. The function of this family is unknown but
it is thought that Osp proteins may be involved in post
invasion events related to virulence. Since bacterial
pathogens adapt to multiple environments during the
course of infecting a host, it has been proposed that
Shigella evolved a mechanism to take advantage of a
unique intracellular cue, which is mediated through
MxiE, to express proteins when the organism reaches the
eukaryotic cytosol.
Length = 284
Score = 27.9 bits (62), Expect = 6.6
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 22 NIRLVEYLLRTG-HDVNEKMKL--DGRTALFVAVHFNHRHIAALLIHHGA 68
+++++EY + G DVN K + G T L AV + +R + A L+ HGA
Sbjct: 229 SVKVLEYFINRGLVDVNAKFEKVNSGDTMLDNAVKYGNREMIAALLKHGA 278
>gnl|CDD|235463 PRK05434, PRK05434, phosphoglyceromutase; Provisional.
Length = 507
Score = 28.1 bits (64), Expect = 7.1
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 52 VHFNHRHIAALL---IHHGAKEI-VDLLLDNGADVNFKSATGF 90
VH + H+ ALL G K++ V LD G D KSA G+
Sbjct: 123 VHSHIDHLFALLELAKEEGVKKVYVHAFLD-GRDTPPKSALGY 164
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 28.2 bits (63), Expect = 7.1
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 267 LEELEKKLADANNDTTILDRLDEMKSL 293
+++LE + AD+ + +L+RL+E+K L
Sbjct: 134 MKKLENRTADSKREMEVLERLEELKEL 160
>gnl|CDD|225325 COG2605, COG2605, Predicted kinase related to galactokinase and
mevalonate kinase [General function prediction only].
Length = 333
Score = 28.1 bits (63), Expect = 7.3
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 208 IGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNF------------SLLKVTKNDAGETI 255
+ D L+ L EMK++ E+ A D F L NDA + I
Sbjct: 212 VVDGDEETLEALHEMKALAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRI 271
Query: 256 LDIAKKRG 263
++A K G
Sbjct: 272 YELALKNG 279
>gnl|CDD|165155 PHA02792, PHA02792, ankyrin-like protein; Provisional.
Length = 631
Score = 28.4 bits (63), Expect = 7.5
Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 27/96 (28%)
Query: 24 RLVEYLLRTGHDV-NEKMKLDGRTALFVAVHFNH-------------------------R 57
++VEY+L+ G+ V + + LF H R
Sbjct: 353 KVVEYILKNGNVVVEDDDNIINIMPLF-PTLSIHESDVLSILKLCKPYIDDINKIDKHGR 411
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTAL 93
I I + +V+ L+DNGAD+N + G T +
Sbjct: 412 SILYYCIESHSVSLVEWLIDNGADINITTKYGSTCI 447
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 28.3 bits (63), Expect = 7.5
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 25/120 (20%)
Query: 22 NIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD 81
+I +V L+ G ++ K GRT L H++I L H+ + +I+ LL + G D
Sbjct: 296 DISVVYSFLQPGVKLHYKDSA-GRTCL-------HQYI---LRHNISTDIIKLLHEYGND 344
Query: 82 VNFKSATGFTALH----MACRFHDDDS---------IVRKLLRHGAYYNVVDGKTGKTPL 128
+N G T LH M + D +++ L+ GA V+ G TPL
Sbjct: 345 LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNC-LGYTPL 403
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 27.1 bits (60), Expect = 7.9
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 29 LLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT 88
L+ G D+N K ++ G T L +AV+ + +A L + V++ + N A FK
Sbjct: 77 LMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG---VNMEILNYA---FK--- 127
Query: 89 GFTALHMACRFHD 101
T ++AC HD
Sbjct: 128 --TPYYVACERHD 138
>gnl|CDD|227566 COG5241, RAD10, Nucleotide excision repair endonuclease NEF1, RAD10
subunit [DNA replication, recombination, and repair].
Length = 224
Score = 27.3 bits (60), Expect = 9.8
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 25/110 (22%)
Query: 146 INEIFKLMANNDTTILDRLDEMKSLILE-----------VTKEFGPGDY---NNFSLLKV 191
I E+ N T LD E +S + + D + V
Sbjct: 117 IQELVSTTGIN-TIYLDYSVEERSRYFLTLTYHKLYSDYIIRRMQSLDRSNEFLILIFIV 175
Query: 192 AKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNF 241
K+D+ +T+ ND L R + + EL FG +
Sbjct: 176 NKSDSEDTL----------NDIGKLCRFNGASRDEFELLLGFGFEKAAKY 215
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.139 0.398
Gapped
Lambda K H
0.267 0.0832 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,534,523
Number of extensions: 1755638
Number of successful extensions: 2222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2121
Number of HSP's successfully gapped: 116
Length of query: 338
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 240
Effective length of database: 6,590,910
Effective search space: 1581818400
Effective search space used: 1581818400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.3 bits)