RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5573
(338 letters)
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 111 bits (280), Expect = 5e-29
Identities = 43/166 (25%), Positives = 67/166 (40%), Gaps = 31/166 (18%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G +N+ ++PL A ++ V+ LL+ G VN D T LF A
Sbjct: 26 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDC 84
Query: 60 AALLIHHGA--------------------KEIVDLLLDNGADVNFKSATGFTALHMACRF 99
LL+ HGA E V+ L+ G +++ K + T L++AC
Sbjct: 85 VNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 144
Query: 100 -HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
V+KLL GA +V GK +PL + E+ +L+
Sbjct: 145 QQRA--CVKKLLESGA--DVNQGKGQDSPLHAVARTASEELACLLM 186
Score = 109 bits (274), Expect = 3e-28
Identities = 29/164 (17%), Positives = 60/164 (36%), Gaps = 29/164 (17%)
Query: 4 GATINVE---LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIA 60
GA++ E +P+ A ++ V L+ G +++ K+ T L++A R
Sbjct: 92 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQRACV 150
Query: 61 ALLIHHGA--------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFH 100
L+ GA +E+ LL+D GAD K+A G + +
Sbjct: 151 KKLLESGADVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPP-- 208
Query: 101 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAG-KGAREVNTVLL 143
+ + + L +++ G + ++ ++L
Sbjct: 209 -ESPLAQLFLEREGPPSLMQ-LCRLRIRKCFGIQQHHKITKLVL 250
Score = 96.3 bits (241), Expect = 2e-23
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 19/134 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+P+ A + + L+ G VN D + L A H
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGH------------LSC 51
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V +LL +GA VN +A T L AC D V LL+HGA +V +P+
Sbjct: 52 VKILLKHGAQVNGVTADWHTPLFNACVSGSWD--CVNLLLQHGA--SVQPESDLASPIHE 107
Query: 131 A-GKGAREVNTVLL 143
A +G E L+
Sbjct: 108 AARRGHVECVNSLI 121
Score = 77.9 bits (193), Expect = 9e-17
Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 17/104 (16%)
Query: 42 LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-H 100
+ + + A H + + L+ G VN +A + LH AC H
Sbjct: 1 MSDWSPMHEAAIHGH------------QLSLRNLISQGWAVNIITADHVSPLHEACLGGH 48
Query: 101 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
V+ LL+HGA N V TPL +A G+ + +LL
Sbjct: 49 LS--CVKILLKHGAQVNGVT-ADWHTPLFNACVSGSWDCVNLLL 89
Score = 56.7 bits (138), Expect = 2e-09
Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 7/71 (9%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA + P+ ++ + + L + H I
Sbjct: 189 GADTQAKNAEGKRPVELVPPESPL--AQLFLEREGPPSLMQL-CRLRIRKCFGIQQHHKI 245
Query: 60 AALLIHHGAKE 70
L++ K+
Sbjct: 246 TKLVLPEDLKQ 256
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 110 bits (277), Expect = 2e-28
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 30/153 (19%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G +N+ ++PL A ++ V+ LL+ G VN D T LF A
Sbjct: 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA-DWHTPLFNACVSGSWDC 140
Query: 60 AALLIHHGA--------------------KEIVDLLLDNGADVNFKSATGFTALHMACRF 99
LL+ HGA E V+ L+ G +++ K + T L++AC
Sbjct: 141 VNLLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACEN 200
Query: 100 -HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
V+KLL GA +V GK +PL
Sbjct: 201 QQRA--CVKKLLESGA--DVNQGKGQDSPLHAV 229
Score = 97.6 bits (244), Expect = 1e-23
Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 24/149 (16%)
Query: 4 GATINVE---LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIA 60
GA++ E +P+ A ++ V L+ G +++ K+ T L++A
Sbjct: 148 GASVQPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS-HLGTPLYLACENQQ---- 202
Query: 61 ALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVV 119
+ V LL++GADVN + + LH R ++ + L+ GA
Sbjct: 203 --------RACVKKLLESGADVN-QGKGQDSPLHAVVRTASEE--LACLLMDFGADTQAK 251
Query: 120 DGKTGKTPLLHAGKGAREVNTVLLYFINE 148
+ GK P+ E L+ E
Sbjct: 252 N-AEGKRPVELV---PPESPLAQLFLERE 276
Score = 95.3 bits (238), Expect = 8e-23
Identities = 35/134 (26%), Positives = 50/134 (37%), Gaps = 19/134 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+P+ A + + L+ G VN D + L A H
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITA-DHVSPLHEACLGGH------------LSC 107
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V +LL +GA VN +A T L AC D V LL+HGA +V +P+
Sbjct: 108 VKILLKHGAQVNGVTADWHTPLFNACVSGSWD--CVNLLLQHGA--SVQPESDLASPIHE 163
Query: 131 A-GKGAREVNTVLL 143
A +G E L+
Sbjct: 164 AARRGHVECVNSLI 177
Score = 88.3 bits (220), Expect = 2e-20
Identities = 35/150 (23%), Positives = 51/150 (34%), Gaps = 29/150 (19%)
Query: 17 AVWDNNIRLVEYLLRTGHDVNEKMK----LDGRTALFVAVHFNHR--------------- 57
++ L+ G + +DG R
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61
Query: 58 --HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA 114
H AA HG + + L+ G VN +A + LH AC H V+ LL+HGA
Sbjct: 62 PMHEAA---IHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLS--CVKILLKHGA 116
Query: 115 YYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
N V TPL +A G+ + +LL
Sbjct: 117 QVNGVT-ADWHTPLFNACVSGSWDCVNLLL 145
Score = 67.5 bits (166), Expect = 5e-13
Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 26/104 (25%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G I+ + TPL A + V+ LL +G DVN+ + L V +
Sbjct: 180 GGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK--GQDSPLHAVVRTASEEL 237
Query: 60 AALLIHHGA--------------------KEIVDLLLDNGADVN 83
A LL+ GA L GA +
Sbjct: 238 ACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLEREGASLP 281
Score = 52.5 bits (127), Expect = 5e-08
Identities = 15/117 (12%), Positives = 31/117 (26%), Gaps = 37/117 (31%)
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFK-------------------------------SA 87
+ + H L+ G+ + +
Sbjct: 1 MGS---SHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAV 57
Query: 88 TGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
+ ++ +H A +R L+ G N++ +PL A G +LL
Sbjct: 58 SDWSPMHEAAIHGHQL-SLRNLISQGWAVNIIT-ADHVSPLHEACLGGHLSCVKILL 112
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 111 bits (279), Expect = 1e-27
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 28/153 (18%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A N LTPL AV NN+ +V+ LL G + +G T L +A N +
Sbjct: 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW-NGYTPLHIAAKQNQVEV 227
Query: 60 AALLIHHGA---------------------KEIVDLLLDNGADVNFKSATGFTALHMACR 98
A L+ +G E+V LLL A+ N + +G T LH+ +
Sbjct: 228 ARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287
Query: 99 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ L++HG + + G TPL A
Sbjct: 288 -EGHVPVADVLIKHGVMVDATT-RMGYTPLHVA 318
Score = 105 bits (265), Expect = 1e-25
Identities = 43/146 (29%), Positives = 59/146 (40%), Gaps = 22/146 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G + LTPL A + ++ +V+ LL+ G N T L +A H
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV-KVETPLHMAARAGH--- 59
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
E+ LL N A VN K+ T LH A R H + +V+ LL + A N+
Sbjct: 60 ---------TEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN--MVKLLLENNANPNL 108
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLL 143
G TPL A +G E LL
Sbjct: 109 AT-TAGHTPLHIAAREGHVETVLALL 133
Score = 104 bits (261), Expect = 4e-25
Identities = 47/151 (31%), Positives = 69/151 (45%), Gaps = 22/151 (14%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A N+ LTPL + ++ + + L++ G V+ + G T L VA H+ +
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR-MGYTPLHVASHYGN--- 323
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
++V LL + ADVN K+ G++ LH A + H D IV LL++GA N
Sbjct: 324 ---------IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD--IVTLLLKNGASPNE 372
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLLYFINE 148
V G TPL A G V VL +E
Sbjct: 373 VS-SDGTTPLAIAKRLGYISVTDVLKVVTDE 402
Score = 103 bits (259), Expect = 7e-25
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 21/133 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A+ TPL A +R+ E LL N K +G T L VAVH N+
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK-NGLTPLHVAVHHNN--- 191
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
+IV LLL G + + G+T LH+A + + + R LL++G N
Sbjct: 192 ---------LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVE--VARSLLQYGGSANA 240
Query: 119 VDGKTGKTPLLHA 131
G TPL A
Sbjct: 241 ES-VQGVTPLHLA 252
Score = 101 bits (254), Expect = 3e-24
Identities = 44/133 (33%), Positives = 57/133 (42%), Gaps = 21/133 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA+ NV TPL A + + +YLL+ VN K K D +T L A H
Sbjct: 37 GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK-DDQTPLHCAARIGH--- 92
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
+V LLL+N A+ N + G T LH+A R H + V LL A
Sbjct: 93 ---------TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE--TVLALLEKEASQAC 141
Query: 119 VDGKTGKTPLLHA 131
+ K G TPL A
Sbjct: 142 MT-KKGFTPLHVA 153
Score = 98.7 bits (247), Expect = 3e-23
Identities = 36/133 (27%), Positives = 50/133 (37%), Gaps = 21/133 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A +N + TPL A + +V+ LL + N G T L +A H
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-AGHTPLHIAAREGH--- 125
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
E V LL+ A + GFT LH+A ++ + LL A+ N
Sbjct: 126 ---------VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR--VAELLLERDAHPNA 174
Query: 119 VDGKTGKTPLLHA 131
K G TPL A
Sbjct: 175 AG-KNGLTPLHVA 186
Score = 69.8 bits (172), Expect = 2e-13
Identities = 21/115 (18%), Positives = 37/115 (32%), Gaps = 24/115 (20%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A +N + +PL A + +V LL+ G NE DG T L +A + +
Sbjct: 334 QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS-DGTTPLAIAKRLGYISV 392
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
+L ++ D + V + V ++L
Sbjct: 393 TDVLK---------VVTDETSFVLVSDKHRMSFPE----------TVDEILDVSE 428
Score = 52.9 bits (128), Expect = 5e-08
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
G +G T LH+A IV+ LL+ GA NV + +TPL A
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLP-IVKNLLQRGASPNVSN-VKVETPLHMA 54
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 104 bits (262), Expect = 2e-27
Identities = 39/156 (25%), Positives = 54/156 (34%), Gaps = 28/156 (17%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHD-VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA-- 68
+ + ++ LR G + VN+ + G T L A F L+ GA
Sbjct: 4 LSIHQLAAQGELDQLKEHLRKGDNLVNKPDE-RGFTPLIWASAFGEIETVRFLLEWGADP 62
Query: 69 -------------------KEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRK 108
+IV LLL+ D+N G T L A R H V
Sbjct: 63 HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVK--CVEA 120
Query: 109 LLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
LL GA +G TP+ A G R+V V+
Sbjct: 121 LLARGADLTTEA-DSGYTPMDLAVALGYRKVQQVIE 155
Score = 94.0 bits (235), Expect = 2e-23
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 21/129 (16%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA ++ + L A +V LL D+N +G T L AV NH
Sbjct: 59 GADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDW-NGGTPLLYAVRGNH--- 114
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
+ V+ LL GAD+ ++ +G+T + +A + + + + H
Sbjct: 115 ---------VKCVEALLARGADLTTEADSGYTPMDLAVALGYRK--VQQVIENHILKLFQ 163
Query: 119 VDGKTGKTP 127
+ P
Sbjct: 164 SN-LVPADP 171
Score = 66.7 bits (164), Expect = 2e-13
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGAD-VNFKSATGFTALHMACRF-HD 101
++ + + L G + VN GFT L A F
Sbjct: 2 DSLSIHQLAAQGE------------LDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEI 49
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ VR LL GA +++ K ++ L A
Sbjct: 50 E--TVRFLLEWGADPHILA-KERESALSLA 76
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 102 bits (258), Expect = 7e-27
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 34/159 (21%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+++ L A + V LL G + N GR + V + +A LL
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNS-YGRRPIQVMMM-GSARVAELL 63
Query: 64 IHHGA----------------------KEIVDLLLDNGADVNFKSATGFTALHMACRF-H 100
+ HGA + + +L GA ++ + A G + +A H
Sbjct: 64 LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH 123
Query: 101 DDDSIVRKLLRHGAYYNVVDGKTGKTPL-LHAGKGAREV 138
D + R L G G + A +G ++
Sbjct: 124 RD--VARYLRAAAG------GTRGSNHARIDAAEGPSDI 154
Score = 76.0 bits (188), Expect = 6e-17
Identities = 24/112 (21%), Positives = 35/112 (31%), Gaps = 18/112 (16%)
Query: 34 HDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTAL 93
M+ L A E V LL+ GA+ N ++ G +
Sbjct: 3 PAAGSSME-PSADWLATAAARGR------------VEEVRALLEAGANPNAPNSYGRRPI 49
Query: 94 HMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 143
+ + LL HGA N D T +H A +G + VL
Sbjct: 50 QVMMMGSAR--VAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLH 98
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 101 bits (255), Expect = 3e-26
Identities = 42/146 (28%), Positives = 55/146 (37%), Gaps = 22/146 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
IN TPL A I +VE+LL+ G D K +AL +A +
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK-GRESALSLACSKGY--- 81
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
+IV +LLD G DVN G T L A H V+ LL GA +
Sbjct: 82 ---------TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVK--CVKMLLESGADPTI 130
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLL 143
+G + A G R V V+
Sbjct: 131 ET-DSGYNSMDLAVALGYRSVQQVIE 155
Score = 97.5 bits (244), Expect = 9e-25
Identities = 30/121 (24%), Positives = 45/121 (37%), Gaps = 17/121 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+ + + + + +N + +G T L A +
Sbjct: 5 LSVHQLAAQGEMLYLATRIEQENVINHTDE-EGFTPLMWAAAHGQ------------IAV 51
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V+ LL NGAD +AL +AC + D IV+ LL G N D G TPLL+
Sbjct: 52 VEFLLQNGADPQLLGKGRESALSLACSKGYTD--IVKMLLDCGVDVNEYD-WNGGTPLLY 108
Query: 131 A 131
A
Sbjct: 109 A 109
Score = 70.9 bits (175), Expect = 5e-15
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 17/103 (16%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 101
++ + ++ +N GFT L A
Sbjct: 2 ANSLSVHQLAAQGE------------MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQI 49
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
+V LL++GA ++ K ++ L A KG ++ +LL
Sbjct: 50 A--VVEFLLQNGADPQLLG-KGRESALSLACSKGYTDIVKMLL 89
Score = 64.7 bits (159), Expect = 8e-13
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 17/86 (19%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G +N TPL AV N+++ V+ LL +G D + G ++ +AV +
Sbjct: 92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNSMDLAVALGY--- 147
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFK 85
+ + ++ + +
Sbjct: 148 ---------RSVQQVIESHLLKLLQN 164
Score = 33.1 bits (77), Expect = 0.063
Identities = 6/42 (14%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMK 41
GA +E + AV + + + + + +K
Sbjct: 125 GADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 104 bits (261), Expect = 4e-26
Identities = 34/155 (21%), Positives = 46/155 (29%), Gaps = 37/155 (23%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--- 68
T L A VE L G V + G TAL +A A +L+
Sbjct: 47 TALHLAAILGEASTVEKLYAAGAGVLVAER-GGHTALHLACRVRAHTCACVLLQPRPSHP 105
Query: 69 --------------------------------KEIVDLLLDNGADVNFKSATGFTALHMA 96
E D + ++ G T LH+A
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVA 165
Query: 97 CRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
D + +VR L GA N + G+TPL A
Sbjct: 166 VIHKDAE-MVRLLRDAGADLNKPEPTCGRTPLHLA 199
Score = 102 bits (256), Expect = 2e-25
Identities = 33/132 (25%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
+ E TPL AV + +V L G D+N+ GRT L +AV
Sbjct: 148 RLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQA--- 204
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
+++LLL GAD + G T L A + + R L HGA
Sbjct: 205 ---------ASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI-LARLLRAHGAPEPED 254
Query: 120 DGKTGKTPLLHA 131
+P +
Sbjct: 255 G-GDKLSPCSSS 265
Score = 89.5 bits (223), Expect = 8e-21
Identities = 29/148 (19%), Positives = 43/148 (29%), Gaps = 31/148 (20%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTG---HDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68
T L AV + +++LL ++ + G+TAL +A
Sbjct: 11 TALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-LGQTALHLAAILGE------------ 57
Query: 69 KEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV--------- 118
V+ L GA V G TALH+ACR LL+ +
Sbjct: 58 ASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT--CACVLLQPRPSHPRDASDTYLTQ 115
Query: 119 ---VDGKTGKTPLLHAGKGAREVNTVLL 143
T P + E
Sbjct: 116 SQDCTPDTSHAPAAVDSQPNPENEEEPR 143
Score = 81.1 bits (201), Expect = 8e-18
Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 18/100 (18%)
Query: 4 GATINVE-----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA +N TPL AV ++E LL+ G D +M GRT L A+ +
Sbjct: 181 GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY-GGRTPLGSALLRPN-- 237
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACR 98
+ LL +GA + +
Sbjct: 238 ----------PILARLLRAHGAPEPEDGGDKLSPCSSSGS 267
Score = 77.2 bits (191), Expect = 2e-16
Identities = 30/102 (29%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
DG TAL +AV H L+ A ++ ++ G TALH+A +
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSA---------GHEYLDLQNDLGQTALHLAAILGEA 58
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
V KL GA V + + G T L A A VLL
Sbjct: 59 S-TVEKLYAAGAGVLVAE-RGGHTALHLACRVRAHTCACVLL 98
Score = 48.3 bits (116), Expect = 1e-06
Identities = 13/80 (16%), Positives = 19/80 (23%), Gaps = 17/80 (21%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA TPL +A+ N L L G E D +
Sbjct: 215 GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG-DKLSPC---------SS 264
Query: 60 AALLIHHGAKEIVDLLLDNG 79
+ + D +
Sbjct: 265 SG---SDSDSDNRDEGDEYD 281
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 99.8 bits (250), Expect = 6e-26
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A +I VEYLL+ G D N K G T L H A +HG ++
Sbjct: 12 TLLHIASIKGDIPSVEYLLQNGSDPNVKDH-AGWTPL---------HEAC---NHGHLKV 58
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V+LLL + A VN + LH A + H D IV+ LL +GA N V+ G P+ +
Sbjct: 59 VELLLQHKALVNTTGYQNDSPLHDAAKNGHVD--IVKLLLSYGASRNAVN-IFGLRPVDY 115
Query: 131 A 131
Sbjct: 116 T 116
Score = 70.1 bits (173), Expect = 5e-15
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 16/90 (17%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 101
G T L +A V+ LL NG+D N K G+T LH AC H
Sbjct: 9 RGETLLHIASIKGD------------IPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHL 56
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+V LL+H A N +PL A
Sbjct: 57 K--VVELLLQHKALVNTTG-YQNDSPLHDA 83
Score = 57.8 bits (141), Expect = 1e-10
Identities = 12/69 (17%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A +N +PL A + ++ +V+ LL G N G + + + +
Sbjct: 66 KALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI-FGLRPVDYTDDESMKSL 124
Query: 60 AALLIHHGA 68
L + +
Sbjct: 125 LLLPEKNES 133
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 100 bits (251), Expect = 8e-26
Identities = 52/133 (39%), Positives = 67/133 (50%), Gaps = 21/133 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N E TPL A ++ ++ +VE LL+ G DVN G T L +A F H
Sbjct: 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH-AGMTPLRLAALFGH--- 92
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
EIV++LL NGADVN G T LH+A F H + IV LL++GA N
Sbjct: 93 ---------LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLE--IVEVLLKNGADVNA 141
Query: 119 VDGKTGKTPLLHA 131
D K GKT +
Sbjct: 142 QD-KFGKTAFDIS 153
Score = 94.4 bits (236), Expect = 1e-23
Identities = 43/121 (35%), Positives = 52/121 (42%), Gaps = 17/121 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
L A V L+ G DVN + G T L +A H EI
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDA-SGWTPLHLAAFNGH------------LEI 62
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V++LL NGADVN G T L +A F H + IV LL++GA N D G TPL
Sbjct: 63 VEVLLKNGADVNAVDHAGMTPLRLAALFGHLE--IVEVLLKNGADVNAND-MEGHTPLHL 119
Query: 131 A 131
A
Sbjct: 120 A 120
Score = 73.9 bits (183), Expect = 3e-16
Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 16/100 (16%)
Query: 33 GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTA 92
G + D L A + V +L+ NGADVN + A+G+T
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGR------------DDEVRILMANGADVNAEDASGWTP 50
Query: 93 LHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
LH+A H + IV LL++GA N VD G TPL A
Sbjct: 51 LHLAAFNGHLE--IVEVLLKNGADVNAVD-HAGMTPLRLA 87
Score = 56.6 bits (138), Expect = 5e-10
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N TPL A ++ +VE LL+ G DVN + K G+TA +++ + +
Sbjct: 103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK-FGKTAFDISIDNGNEDL 161
Query: 60 AALLIHH 66
A +L
Sbjct: 162 AEILQKL 168
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 101 bits (255), Expect = 1e-25
Identities = 35/142 (24%), Positives = 59/142 (41%), Gaps = 25/142 (17%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
T L A + + LL D N + GRT L AV + + + +LI + A ++
Sbjct: 27 TALHLAARYSRSDAAKRLLEASADANIQDN-MGRTPLHAAVSADAQGVFQILIRNRATDL 85
Query: 72 ----------------------VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKL 109
++ L+++ ADVN G +ALH A ++ D L
Sbjct: 86 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD-AAVVL 144
Query: 110 LRHGAYYNVVDGKTGKTPLLHA 131
L++GA ++ + +TPL A
Sbjct: 145 LKNGANKDMQN-NREETPLFLA 165
Score = 93.6 bits (234), Expect = 9e-23
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A ++E L+ + DVN G++AL A N+ +
Sbjct: 94 TPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNN------------VDA 140
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+LL NGA+ + ++ T L +A R + + LL H A ++ D + P A
Sbjct: 141 AVVLLKNGANKDMQNNREETPLFLAAREGSYE-TAKVLLDHFANRDITD-HMDRLPRDIA 198
Score = 88.2 bits (220), Expect = 9e-21
Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 18/118 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A +N + L A NN+ LL+ G + + + T LF+A
Sbjct: 115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGS--- 170
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 117
E +LLD+ A+ + +A D IVR L + +
Sbjct: 171 ---------YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD-IVRLLDEYNLVRS 218
Score = 82.1 bits (204), Expect = 2e-18
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 15/112 (13%)
Query: 21 NNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGA 80
+ ++ + G ++ + G TAL +A ++ + LL+ A
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR------------SDAAKRLLEASA 49
Query: 81 DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY-NVVDGKTGKTPLLHA 131
D N + G T LH A D + + L+R+ A + G TPL+ A
Sbjct: 50 DANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARM-HDGTTPLILA 99
Score = 62.4 bits (153), Expect = 1e-11
Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 24/95 (25%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA ++ E TPL A + + + LL + + R +A H
Sbjct: 148 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH-MDRLPRDIAQERMH--- 203
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALH 94
+IV LL + + LH
Sbjct: 204 ---------HDIVRLLDEYNLVRS-------PQLH 222
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 98.6 bits (247), Expect = 2e-25
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 18/131 (13%)
Query: 4 GATINVE---LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIA 60
GA + +PL A + E LLR G + + K RT L +A H
Sbjct: 25 GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK-VDRTPLHMAASEGH---- 79
Query: 61 ALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD 120
IV++LL +GADVN K TALH A + + +V L+++GA +
Sbjct: 80 --------ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQE-VVELLIKYGADVHTQS 130
Query: 121 GKTGKTPLLHA 131
K KT +
Sbjct: 131 -KFCKTAFDIS 140
Score = 83.6 bits (208), Expect = 7e-20
Identities = 32/134 (23%), Positives = 46/134 (34%), Gaps = 19/134 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
L A V L+ G G + L +A + H +L+
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFTTDW--LGTSPLHLAAQYGHFSTTEVLLRA----- 56
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
G + ++ T LHMA H + IV LL+HGA N D T L
Sbjct: 57 -------GVSRDARTKVDRTPLHMAASEGHAN--IVEVLLKHGADVNAKD-MLKMTALHW 106
Query: 131 A-GKGAREVNTVLL 143
A +EV +L+
Sbjct: 107 ATEHNHQEVVELLI 120
Score = 78.2 bits (194), Expect = 9e-18
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 19/112 (16%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G + + + TPL A + + +VE LL+ G DVN K TAL A NH
Sbjct: 57 GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM-LKMTALHWATEHNH--- 112
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 111
+E+V+LL+ GADV+ +S TA ++ ++D + ++L+
Sbjct: 113 ---------QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED-LA-EILQ 153
Score = 66.3 bits (163), Expect = 1e-13
Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 15/89 (16%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
D L A + V +L+ NGA G + LH+A + +
Sbjct: 1 DLGKKLLEAARAGQ------------DDEVRILMANGAPFT-TDWLGTSPLHLAAQ-YGH 46
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
S LLR G + K +TPL A
Sbjct: 47 FSTTEVLLRAGVSRDART-KVDRTPLHMA 74
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 101 bits (254), Expect = 4e-25
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
L AV + ++ LV+ LL G +VN + + G T L AV + ++I
Sbjct: 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR------------EDI 54
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V+LLL +GAD + G T +A +++ L GA N D G T +
Sbjct: 55 VELLLRHGADPVLRKKNGATPFLLAAIAGSVK--LLKLFLSKGADVNECD-FYGFTAFME 111
Query: 131 A 131
A
Sbjct: 112 A 112
Score = 96.0 bits (240), Expect = 4e-23
Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 31/156 (19%)
Query: 4 GATINVE-----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA +N + TPL AV + +VE LLR G D + K +G T +A
Sbjct: 28 GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK-NGATPFLLAAIAGS-- 84
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 117
+++ L L GADVN GFTA A + ++ L + GA N
Sbjct: 85 ----------VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK--ALKFLYKRGANVN 132
Query: 118 VVD---------GKTGKTPLLHA-GKGAREVNTVLL 143
+ K G T L+ A KG EV +LL
Sbjct: 133 LRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILL 168
Score = 92.1 bits (230), Expect = 1e-21
Identities = 40/135 (29%), Positives = 59/135 (43%), Gaps = 14/135 (10%)
Query: 12 TPLCAAVWDNNIRLVEYLL-RTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
T L A ++ +++ LL G DVN GR AL A+ + +
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDN-MGRNALIHALLSSD--------DSDVEA 200
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL-RHGAYYNVVDGKTGKTPLL 129
I LLLD+GADVN + G T L +A +V++LL + N D GKT LL
Sbjct: 201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLG-LVQRLLEQEHIEINDTD-SDGKTALL 258
Query: 130 HA-GKGAREVNTVLL 143
A +++ +L
Sbjct: 259 LAVELKLKKIAELLC 273
Score = 90.6 bits (226), Expect = 4e-21
Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 30/145 (20%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMK---------LDGRTALFV 50
GA +N T A ++ +++L + G +VN + K G TAL
Sbjct: 95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154
Query: 51 AVHFNHRHIAALLIHHGAKEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDS---IV 106
A H E++ +LLD GADVN G AL A DD I
Sbjct: 155 AAEKGH------------VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT 202
Query: 107 RKLLRHGAYYNVVDGKTGKTPLLHA 131
LL HGA NV + GKTPL+ A
Sbjct: 203 HLLLDHGADVNVRG-ERGKTPLILA 226
Score = 78.3 bits (194), Expect = 9e-17
Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 23/126 (18%)
Query: 4 GATINVE----LTPLCAAVWDNNIR----LVEYLLRTGHDVNEKMKLDGRTALFVAVHFN 55
GA +N L A+ ++ + LL G DVN + + G+T L +AV
Sbjct: 172 GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE-RGKTPLILAVEKK 230
Query: 56 HRHIAALLIHHGAKEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
H +V LL+ ++N + G TAL +A I L + GA
Sbjct: 231 H------------LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKK-IAELLCKRGA 277
Query: 115 YYNVVD 120
+ D
Sbjct: 278 STDCGD 283
Score = 70.6 bits (174), Expect = 3e-14
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSA-TGFTALHMACRFHD 101
+ L AV ++V LL+ GA+VNF+ G+T LH A +
Sbjct: 4 EDNHLLIKAVQNED------------VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSR 51
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
+D IV LLRHGA + K G TP L A G+ ++ + L
Sbjct: 52 ED-IVELLLRHGADPVLRK-KNGATPFLLAAIAGSVKLLKLFL 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 97.0 bits (243), Expect = 4e-25
Identities = 50/121 (41%), Positives = 64/121 (52%), Gaps = 17/121 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A + ++ +V+ LL G DVN K K +GRT L +A H E+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH------------LEV 50
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V LLL+ GADVN K G T LH+A R H + +V+ LL GA N D K G+TPL
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLE--VVKLLLEAGADVNAKD-KNGRTPLHL 107
Query: 131 A 131
A
Sbjct: 108 A 108
Score = 89.3 bits (223), Expect = 3e-22
Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 20/117 (17%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N + TPL A + ++ +V+ LL G DVN K K +GRT L +A H
Sbjct: 25 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPLHLAARNGH--- 80
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAY 115
E+V LLL+ GADVN K G T LH+A R H + +V+ LL GAY
Sbjct: 81 ---------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE--VVKLLLEAGAY 126
Score = 72.8 bits (180), Expect = 4e-16
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 101
+GRT L +A H E+V LLL+ GADVN K G T LH+A R H
Sbjct: 1 NGRTPLHLAARNGH------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 48
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ +V+ LL GA N D K G+TPL A
Sbjct: 49 E--VVKLLLEAGADVNAKD-KNGRTPLHLA 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 98.7 bits (247), Expect = 4e-25
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 18/134 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+PL A + +VE L+ G +N + T L H+AA HG ++I
Sbjct: 41 SPLHWACREGRSAVVEMLIMRGARINVMNR-GDDTPL---------HLAA---SHGHRDI 87
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V LL AD+N + G LH AC + D + L+ +GA ++ + K G+ P+
Sbjct: 88 VQKLLQYKADINAVNEHGNVPLHYACFWGQDQ--VAEDLVANGALVSICN-KYGEMPVDK 144
Query: 131 A-GKGAREVNTVLL 143
A +
Sbjct: 145 AKAPLRELLRERAE 158
Score = 96.0 bits (240), Expect = 4e-24
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 18/123 (14%)
Query: 11 LTPLCAAVWDNNIRLVEYLL-RTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK 69
+ + + N V L T +D+N+ G + L A
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDD-HGFSPLHWACREGR------------S 52
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
+V++L+ GA +N + T LH+A H D IV+KLL++ A N V+ + G PL
Sbjct: 53 AVVEMLIMRGARINVMNRGDDTPLHLAASHGHRD--IVQKLLQYKADINAVN-EHGNVPL 109
Query: 129 LHA 131
+A
Sbjct: 110 HYA 112
Score = 87.1 bits (217), Expect = 1e-20
Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 20/124 (16%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA INV + TPL A + +V+ LL+ D+N + G L H
Sbjct: 62 GARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE-HGNVPL---------HY 111
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
A G ++ + L+ NGA V+ + G + A + + + + G N
Sbjct: 112 AC---FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLREL--LRERAEKMGQNLNR 166
Query: 119 VDGK 122
+ K
Sbjct: 167 IPYK 170
Score = 70.2 bits (173), Expect = 1e-14
Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 20/105 (19%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGA-DVNFKSATGFTALHMACRF-H 100
+ +F + V L LDN D+N GF+ LH ACR
Sbjct: 4 EFMDDIFTQCREGN------------AVAVRLWLDNTENDLNQGDDHGFSPLHWACREGR 51
Query: 101 DDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 143
+V L+ GA NV++ + TP LH A G R++ LL
Sbjct: 52 SA--VVEMLIMRGARINVMN-RGDDTP-LHLAASHGHRDIVQKLL 92
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 97.8 bits (245), Expect = 6e-25
Identities = 43/137 (31%), Positives = 61/137 (44%), Gaps = 17/137 (12%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHG 67
+ TPL A N + +VEYLL+ G DV+ K K G L A + H
Sbjct: 40 GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK-GGLVPLHNACSYGH----------- 87
Query: 68 AKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKT 126
E+ +LL+ +GA VN FT LH A + I + LL+HGA + + G T
Sbjct: 88 -YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE--ICKLLLQHGADPTKKN-RDGNT 143
Query: 127 PLLHAGKGAREVNTVLL 143
PL G ++ +L
Sbjct: 144 PLDLVKDGDTDIQDLLR 160
Score = 90.9 bits (227), Expect = 2e-22
Identities = 42/144 (29%), Positives = 59/144 (40%), Gaps = 20/144 (13%)
Query: 4 GATINVE-LTPLCAAVWDNNIRLVEYLLRT-GHDVNEKMKLDGRTALFVAVHFNHRHIAA 61
GA N E L A ++ V+ L + + T L A +N
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG-RQSTPLHFAAGYNR----- 54
Query: 62 LLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVD 120
+V+ LL +GADV+ K G LH AC + H + + L++HGA NV D
Sbjct: 55 -------VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYE--VAELLVKHGAVVNVAD 105
Query: 121 GKTGKTPLLHA-GKGAREVNTVLL 143
TPL A KG E+ +LL
Sbjct: 106 -LWKFTPLHEAAAKGKYEICKLLL 128
Score = 68.6 bits (169), Expect = 3e-14
Identities = 25/101 (24%), Positives = 34/101 (33%), Gaps = 25/101 (24%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA ++ L PL A + + E L++ G VN T L A I
Sbjct: 65 GADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL-WKFTPLHEAAAKGKYEI 123
Query: 60 AALLIHHGA--------------------KEIVDLLLDNGA 80
LL+ HGA +I DLL + A
Sbjct: 124 CKLLLQHGADPTKKNRDGNTPLDLVKDGDTDIQDLLRGDAA 164
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 99.8 bits (250), Expect = 7e-25
Identities = 32/133 (24%), Positives = 47/133 (35%), Gaps = 18/133 (13%)
Query: 4 GATINVE-----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA ++ TPL A ++ +V L++ G D + +G + + +A F H
Sbjct: 65 GAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG-EGCSCIHLAAQFGH-- 121
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 118
IV L+ G DV+ G T L A R LL N+
Sbjct: 122 ----------TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171
Query: 119 VDGKTGKTPLLHA 131
D T L A
Sbjct: 172 GDKYHKNTALHWA 184
Score = 98.7 bits (247), Expect = 2e-24
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 20/133 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G + +T L A +N I LV+Y + G V++ T L A H
Sbjct: 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH--- 88
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
+V L+ GAD + G + +H+A +F H IV L+ G ++
Sbjct: 89 ---------LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTS--IVAYLIAKGQDVDM 137
Query: 119 VDGKTGKTPLLHA 131
+D + G TPL+ A
Sbjct: 138 MD-QNGMTPLMWA 149
Score = 95.2 bits (238), Expect = 4e-23
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 21/134 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA ++ + + A + +V YL+ G DV+ + +G T L A + H
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ-NGMTPLMWAAYRTHS-- 155
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFK-SATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 117
+ LLL VN TALH A + ++ LL GA +
Sbjct: 156 ---------VDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTT--VISLLLEAGANVD 204
Query: 118 VVDGKTGKTPLLHA 131
+ G++ L A
Sbjct: 205 AQN-IKGESALDLA 217
Score = 92.1 bits (230), Expect = 5e-22
Identities = 27/122 (22%), Positives = 46/122 (37%), Gaps = 18/122 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+ A L+ G+DV + K + T L A N ++
Sbjct: 11 WDIVKATQYGIYERCRELVEAGYDVRQPDK-ENVTLLHWAAINNR------------IDL 57
Query: 72 VDLLLDNGADVNFKSA-TGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 129
V + GA V+ T LH A R H +V +L+++GA +++D G + +
Sbjct: 58 VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLS--MVVQLMKYGADPSLID-GEGCSCIH 114
Query: 130 HA 131
A
Sbjct: 115 LA 116
Score = 87.1 bits (217), Expect = 3e-20
Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 20/117 (17%)
Query: 4 GATINVE----LTPL-CAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
G +++ +TPL AA +++ LL VN K TAL AV +
Sbjct: 132 GQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGN-- 189
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA 114
++ LLL+ GA+V+ ++ G +AL +A + + ++ L
Sbjct: 190 ----------TTVISLLLEAGANVDAQNIKGESALDLAKQRKNVW--MINHLQEARQ 234
Score = 75.5 bits (187), Expect = 4e-16
Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 16/97 (16%)
Query: 36 VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHM 95
+ + A + E L++ G DV T LH
Sbjct: 2 MTHIDD-YSTWDIVKATQYGI------------YERCRELVEAGYDVRQPDKENVTLLHW 48
Query: 96 ACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
A D +V+ + GA + + G TPL A
Sbjct: 49 AAINNRID--LVKYYISKGAIVDQLGGDLNSTPLHWA 83
Score = 62.5 bits (153), Expect = 2e-11
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 14/83 (16%)
Query: 4 GATINVE-----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
++N+ T L AV N ++ LL G +V+ + G +AL +A +
Sbjct: 166 NVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI-KGESALDLAKQRKNVW 224
Query: 59 IAALLIHHGAKEIVDLLLDNGAD 81
+ L G D
Sbjct: 225 MINHLQEARQ--------AKGYD 239
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 99.3 bits (248), Expect = 1e-24
Identities = 38/183 (20%), Positives = 65/183 (35%), Gaps = 30/183 (16%)
Query: 4 GATINVE-------LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNH 56
+ L L A + +V+ ++ +D ++ + +G TAL A+ +
Sbjct: 8 AGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE-EGITALHNAICGAN 66
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY 116
IVD L+ GA+VN + G+T LH A +D I L++HGA
Sbjct: 67 ------------YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTV-ICMALVQHGAAI 113
Query: 117 NVVDGKTGKTPLLHA---GKGAREVNTVLLYFINEIFKLMANNDTTIL-----DRLDEMK 168
G T +G + L + + LM + L + DE+
Sbjct: 114 FATTLSDGATAFEKCDPYREGYADC-ATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS 172
Query: 169 SLI 171
Sbjct: 173 FRE 175
Score = 81.5 bits (202), Expect = 2e-18
Identities = 25/133 (18%), Positives = 38/133 (28%), Gaps = 19/133 (14%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N TPL A N+ + L++ G + DG TA
Sbjct: 77 GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF---------EK 127
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
G + L D + ++ AL D+ R G V+
Sbjct: 128 CD-PYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL----SFREGESVTVL 182
Query: 120 DG-KTGKTPLLHA 131
+T A
Sbjct: 183 RRDGPEETDWWWA 195
Score = 80.8 bits (200), Expect = 4e-18
Identities = 26/109 (23%), Positives = 37/109 (33%), Gaps = 18/109 (16%)
Query: 26 VEYLLRTGHDVNEKMK--LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVN 83
+ +LR + + L+ L A E+V + D +
Sbjct: 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGE------------LEVVQQAVKEMNDPS 48
Query: 84 FKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ G TALH A + IV L+ GA N D G TPL A
Sbjct: 49 QPNEEGITALHNAICGANYS--IVDFLITAGANVNSPD-SHGWTPLHCA 94
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 99.4 bits (249), Expect = 1e-24
Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 14/132 (10%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G +++ TPL AV +V L+ G + G+TA +A
Sbjct: 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLACEHRSPTC 94
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
L+ A D+ ++ G TALH+A + V+ LL GA + V
Sbjct: 95 LRALLDSAAPG--------TLDLEARNYDGLTALHVAVNTECQE-TVQLLLERGADIDAV 145
Query: 120 DGKTGKTPLLHA 131
D K+G++PL+HA
Sbjct: 146 DIKSGRSPLIHA 157
Score = 98.7 bits (247), Expect = 2e-24
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 14/121 (11%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
LT L AV V+ LL G D++ GR+ L AV N
Sbjct: 117 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNS------------LS 164
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
+V LLL +GA+VN + +G +ALH A +VR L+R GA ++ + TPL+
Sbjct: 165 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLP-LVRTLVRSGADSSLKN-CHNDTPLMV 222
Query: 131 A 131
A
Sbjct: 223 A 223
Score = 93.7 bits (234), Expect = 1e-22
Identities = 39/150 (26%), Positives = 60/150 (40%), Gaps = 25/150 (16%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTG----HDVNEKMKLDGRTALFVAVHFN 55
GA+ T A + + LL + D+ + DG TAL VAV+
Sbjct: 69 GASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTE 127
Query: 56 HRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT-GFTALHMACRFHDDDSIVRKLLRHGA 114
+E V LLL+ GAD++ G + L A + +V+ LL+HGA
Sbjct: 128 C------------QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS-MVQLLLQHGA 174
Query: 115 YYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
N +G + L A G+G + L+
Sbjct: 175 NVNAQM-YSGSSALHSASGRGLLPLVRTLV 203
Score = 92.9 bits (232), Expect = 2e-22
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 4 GATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA I+ +PL AV +N++ +V+ LL+ G +VN +M G +AL A
Sbjct: 139 GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMY-SGSSALHSASGRGL-- 195
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
+V L+ +GAD + K+ T L +A D I+R A
Sbjct: 196 ----------LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID-ILRGKATRPA 240
Score = 91.4 bits (228), Expect = 8e-22
Identities = 33/128 (25%), Positives = 46/128 (35%), Gaps = 23/128 (17%)
Query: 12 TPLCAAVWDNNIRLVEYLLRT----GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHG 67
TPL AV N+ V L+ G +++ +T L +AV
Sbjct: 11 TPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTPLHLAVITTL----------- 58
Query: 68 AKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY----NVVDGKT 123
+V LL+ GA G TA H+AC H + +R LL A +
Sbjct: 59 -PSVVRLLVTAGASPMALDRHGQTAAHLACE-HRSPTCLRALLDSAAPGTLDLEARN-YD 115
Query: 124 GKTPLLHA 131
G T L A
Sbjct: 116 GLTALHVA 123
Score = 71.7 bits (177), Expect = 1e-14
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 36 VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHM 95
+ DG T L +AV + L+ +L G +++ + T LH+
Sbjct: 2 ATRADE-DGDTPLHIAVVQGNLPAVHRLV--------NLFQQGGRELDIYNNLRQTPLHL 52
Query: 96 ACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
A S+VR L+ GA +D + G+T A + LL
Sbjct: 53 AVI-TTLPSVVRLLVTAGASPMALD-RHGQTAAHLACEHRSPTCLRALL 99
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 95.5 bits (239), Expect = 2e-24
Identities = 30/129 (23%), Positives = 45/129 (34%), Gaps = 18/129 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
A+ + ++ V+ + G DVN ++ GR L A EI
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLE-GGRKPLHYAADCGQ------------LEI 55
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
++ LL GAD+N T L A H V+ LL GA V G T
Sbjct: 56 LEFLLLKGADINAPDKHHITPLLSAVYEGHVS--CVKLLLSKGADKTVKG-PDGLTAFEA 112
Query: 131 A-GKGAREV 138
+ + +
Sbjct: 113 TDNQAIKAL 121
Score = 71.7 bits (177), Expect = 9e-16
Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 16/90 (17%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 101
A+ + V + G DVN G LH A
Sbjct: 6 MCDKEFMWALKNGD------------LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQL 53
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ I+ LL GA N D K TPLL A
Sbjct: 54 E--ILEFLLLKGADINAPD-KHHITPLLSA 80
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 95.1 bits (238), Expect = 2e-24
Identities = 42/128 (32%), Positives = 53/128 (41%), Gaps = 19/128 (14%)
Query: 4 GATINVE--LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAA 61
G + TPL A + + V+ LL G DVN + K DG T L +A H
Sbjct: 1 GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK-DGNTPLHLAAKNGH----- 54
Query: 62 LLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVD 120
EIV LLL GADVN +S G T H+A + H + IV+ L GA N
Sbjct: 55 -------AEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHE--IVKLLDAKGADVNARS 105
Query: 121 GKTGKTPL 128
Sbjct: 106 -WGSSHHH 112
Score = 75.5 bits (187), Expect = 3e-17
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N TPL A + + +V+ LL G DVN + K DG T +A H
Sbjct: 32 GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK-DGNTPEHLAKKNGH--- 87
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALH 94
EIV LL GADVN +S H
Sbjct: 88 ---------HEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 75.5 bits (187), Expect = 3e-17
Identities = 37/100 (37%), Positives = 42/100 (42%), Gaps = 19/100 (19%)
Query: 33 GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTA 92
GH K DG T L A H E V LL GADVN +S G T
Sbjct: 1 GHMWGSK---DGNTPLHNAAKNGH------------AEEVKKLLSKGADVNARSKDGNTP 45
Query: 93 LHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
LH+A + H + IV+ LL GA N K G TP A
Sbjct: 46 LHLAAKNGHAE--IVKLLLAKGADVNARS-KDGNTPEHLA 82
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 99.1 bits (248), Expect = 3e-24
Identities = 30/134 (22%), Positives = 43/134 (32%), Gaps = 22/134 (16%)
Query: 3 SGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
S + A+ DNN+RLV LL G N + L A
Sbjct: 20 SSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLED-- 74
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 117
+IV +LL +G D + G TAL+ A + V+ ++
Sbjct: 75 ----------TKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQ--TVKLFVKKNWRLM 122
Query: 118 VVDGKTGKTPLLHA 131
KT HA
Sbjct: 123 FYGKTGWKTSFYHA 136
Score = 94.5 bits (236), Expect = 1e-22
Identities = 30/203 (14%), Positives = 57/203 (28%), Gaps = 57/203 (28%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G + T L AV N++ V+ ++ + K +T+ + AV N I
Sbjct: 85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSI 144
Query: 60 AALLIHHGA--------------------KEIVDLLLDNGADVNFKSATGFT-ALHMACR 98
+ + +++ LLLD N ++ F + +A
Sbjct: 145 VSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAID 204
Query: 99 -------------------------FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK 133
DD I + ++ Y T +
Sbjct: 205 NKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDS-YTKDLD-IVKNN 262
Query: 134 GAREVNTVLLYFINEIFKLMANN 156
E+ + N+ +LM N
Sbjct: 263 KLDEIISK-----NKELRLMYVN 280
Score = 82.6 bits (205), Expect = 3e-18
Identities = 26/122 (21%), Positives = 40/122 (32%), Gaps = 22/122 (18%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
+ W + ++ L D + G +A + A+ N+
Sbjct: 2 MDLSRINTW--KSKQLKSFLS-SKDTFKADV-HGHSASYYAIADNN------------VR 45
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 129
+V LL+ GA N LH A IV+ LL G + D G T L
Sbjct: 46 LVCTLLNAGALKNLL--ENEFPLHQAATLEDTK--IVKILLFSGLDDSQFD-DKGNTALY 100
Query: 130 HA 131
+A
Sbjct: 101 YA 102
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 95.2 bits (238), Expect = 3e-24
Identities = 29/138 (21%), Positives = 44/138 (31%), Gaps = 31/138 (22%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
I++ L A + V LL G D N + GR + V + +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR-FGRRPIQVMMM-GSAQV 59
Query: 60 AALLIHHGA----------------------KEIVDLLLDNGADVNFKSATGFTALHMAC 97
A LL+ HGA + + +L GA ++ A G + +A
Sbjct: 60 AELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119
Query: 98 RF-HDDDSIVRKLLRHGA 114
H D I R L
Sbjct: 120 EQGHRD--IARYLHAATG 135
Score = 83.3 bits (207), Expect = 8e-20
Identities = 24/113 (21%), Positives = 34/113 (30%), Gaps = 18/113 (15%)
Query: 33 GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTA 92
++ L A E V LL+ GAD N + G
Sbjct: 2 SPGIHMLGG-SSDAGLATAAARGQ------------VETVRQLLEAGADPNALNRFGRRP 48
Query: 93 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 143
+ + + LL HGA N D T +H A +G + VL
Sbjct: 49 IQVMMMGSAQ--VAELLLLHGAEPNCAD-PATLTRPVHDAAREGFLDTLVVLH 98
Score = 55.5 bits (135), Expect = 6e-10
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 18/83 (21%)
Query: 4 GATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA N P+ A + + + L R G ++ GR + +A H
Sbjct: 67 GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA-WGRLPVDLAEEQGH-- 123
Query: 59 IAALLIHHGAKEIVDLLLDNGAD 81
++I L D
Sbjct: 124 ----------RDIARYLHAATGD 136
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 94.8 bits (237), Expect = 5e-24
Identities = 46/129 (35%), Positives = 58/129 (44%), Gaps = 20/129 (15%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G+ + L A V L+ G DVN K + G T L++A H
Sbjct: 11 GSDLG---KKLLEAARAGQDDEVRILMANGADVNAKDE-YGLTPLYLATAHGH------- 59
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGK 122
EIV++LL NGADVN A GFT LH+A H + I LL+HGA N D K
Sbjct: 60 -----LEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLE--IAEVLLKHGADVNAQD-K 111
Query: 123 TGKTPLLHA 131
GKT +
Sbjct: 112 FGKTAFDIS 120
Score = 65.1 bits (160), Expect = 3e-13
Identities = 29/99 (29%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 33 GHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTA 92
G + D L A +L+ + GADVN K G T
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN------------GADVNAKDEYGLTP 50
Query: 93 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
L++A + IV LL++GA N VD G TPL A
Sbjct: 51 LYLATAHGHLE-IVEVLLKNGADVNAVD-AIGFTPLHLA 87
Score = 56.6 bits (138), Expect = 3e-10
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N TPL A + ++ + E LL+ G DVN + K G+TA +++ + +
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK-FGKTAFDISIGNGNEDL 128
Query: 60 AALLIHH 66
A +L
Sbjct: 129 AEILQKL 135
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 97.5 bits (244), Expect = 7e-24
Identities = 41/146 (28%), Positives = 68/146 (46%), Gaps = 21/146 (14%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTG-HDVNEKMKLDGRTALFVAVHFNHRH 58
A N+ TPL AAV + + + L+R D++ +M DG T L +A
Sbjct: 80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAV-- 136
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 118
+ +++ L+++ ADVN G +ALH A ++ D LL++GA ++
Sbjct: 137 ----------EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVD-AAVVLLKNGANKDM 185
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLL 143
+ +TPL A +G+ E VLL
Sbjct: 186 QN-NREETPLFLAAREGSYETAKVLL 210
Score = 94.8 bits (237), Expect = 5e-23
Identities = 30/120 (25%), Positives = 49/120 (40%), Gaps = 15/120 (12%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A ++E L+ + DVN G++AL A N+ +
Sbjct: 126 TPLILAARLAVEGMLEDLINSHADVNAVDD-LGKSALHWAAAVNN------------VDA 172
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+LL NGA+ + ++ T L +A R + + LL H A ++ D + P A
Sbjct: 173 AVVLLKNGANKDMQNNREETPLFLAAREGSYE-TAKVLLDHFANRDITD-HMDRLPRDIA 230
Score = 84.8 bits (211), Expect = 3e-19
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 15/128 (11%)
Query: 5 ATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLI 64
+ L + ++ ++ + G ++ + G TAL +A ++
Sbjct: 18 SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSR-------- 69
Query: 65 HHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYY-NVVDGKT 123
+ LL+ AD N + G T LH A D + + L+R+ A +
Sbjct: 70 ----SDAAKRLLEASADANIQDNMGRTPLHAAVS-ADAQGVFQILIRNRATDLDARM-HD 123
Query: 124 GKTPLLHA 131
G TPL+ A
Sbjct: 124 GTTPLILA 131
Score = 81.7 bits (203), Expect = 3e-18
Identities = 24/115 (20%), Positives = 37/115 (32%), Gaps = 18/115 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
A +N + L A NN+ LL+ G + + + T LF+A
Sbjct: 147 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN-REETPLFLAAREGS--- 202
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
E +LLD+ A+ + +A D IVR L
Sbjct: 203 ---------YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHD-IVRLLDLEHH 247
Score = 74.8 bits (185), Expect = 9e-16
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 35 DVNEKMKLDGRTALFVAVHFNHRHIAALL-IHHGAKEIVDLLLDNGADV-NFKSATGFTA 92
DVN + DG T L +A A ++ + GA + N TG TA
Sbjct: 2 DVNVRGP-DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60
Query: 93 LHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
LH+A R+ D ++LL A N+ D G+TPL A A+ V +L+
Sbjct: 61 LHLAARYSRSD-AAKRLLEASADANIQD-NMGRTPLHAAVSADAQGVFQILI 110
Score = 61.3 bits (150), Expect = 5e-11
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 17/86 (19%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA ++ E TPL A + + + LL + + R +A H
Sbjct: 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH-MDRLPRDIAQERMH--- 235
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFK 85
+IV LL +
Sbjct: 236 ---------HDIVRLLDLEHHHHHHH 252
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 94.4 bits (236), Expect = 9e-24
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
L +A ++ + LL+ +VN + GRTAL + G EI
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTAL---------QVMK----LGNPEI 52
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
LL GA+ + K TGF +H A R D ++ LL A N+ D G PL
Sbjct: 53 ARRLLLRGANPDLKDRTGFAVIHDAARAGFLD--TLQTLLEFQADVNIED-NEGNLPLHL 109
Query: 131 A 131
A
Sbjct: 110 A 110
Score = 89.0 bits (222), Expect = 1e-21
Identities = 28/134 (20%), Positives = 45/134 (33%), Gaps = 23/134 (17%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
+N + T L N + LL G + + K + G + A
Sbjct: 28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDR-TGFAVIHDAARAGF--- 82
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY-N 117
+ + LL+ ADVN + G LH+A + H +V L++H A
Sbjct: 83 ---------LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLR--VVEFLVKHTASNVG 131
Query: 118 VVDGKTGKTPLLHA 131
+ G T A
Sbjct: 132 HRN-HKGDTACDLA 144
Score = 80.1 bits (199), Expect = 2e-18
Identities = 23/116 (19%), Positives = 47/116 (40%), Gaps = 19/116 (16%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +++ + A + ++ LL DVN + +G L +A H
Sbjct: 60 GANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN-EGNLPLHLAAKEGH--- 115
Query: 60 AALLIHHGAKEIVDLLLDNGA-DVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
+V+ L+ + A +V ++ G TA +A + ++ +V + +GA
Sbjct: 116 ---------LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE-VVSLMQANGA 161
Score = 71.6 bits (177), Expect = 2e-15
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
L A E + LL N +VN ++ G TAL + + +
Sbjct: 4 PWGNELASAAARGD------------LEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPE 51
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
I R+LL GA ++ D +TG + A
Sbjct: 52 --IARRLLLRGANPDLKD-RTGFAVIHDA 77
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 95.5 bits (239), Expect = 1e-23
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
+ T L AV +N + + E LL G +VN K G+T L ++ F +
Sbjct: 58 FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF-SGKTPLMWSIIFGY--- 113
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
E+ LL++GA+VN ++ G T L +A ++ + IV+KLL GA +
Sbjct: 114 ---------SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSE-IVKKLLELGADISAR 163
Query: 120 DGKTGKTPLLHA 131
D TG T A
Sbjct: 164 D-LTGLTAEASA 174
Score = 77.8 bits (193), Expect = 3e-17
Identities = 29/115 (25%), Positives = 48/115 (41%), Gaps = 18/115 (15%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G+ +N TPL ++ + +LL G +VN++ +G T L VA +
Sbjct: 91 GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL-EGETPLIVASKYGR--- 146
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
EIV LL+ GAD++ + TG TA A F + +++
Sbjct: 147 ---------SEIVKKLLELGADISARDLTGLTAEASARIFGRQE-VIKIFTEVRR 191
Score = 74.3 bits (184), Expect = 4e-16
Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 22/129 (17%)
Query: 4 GATINVEL-TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAAL 62
G+ ++ + + +++L N + RT L VA
Sbjct: 1 GSHMDKNGEIVEKIKDEKSINQNLDFL------RNYRDS-YNRTPLMVACMLGM------ 47
Query: 63 LIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGK 122
+ +D L++N + K G TAL A + + I KLL G+ N D
Sbjct: 48 ------ENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLG-IAEKLLSKGSNVNTKD-F 99
Query: 123 TGKTPLLHA 131
+GKTPL+ +
Sbjct: 100 SGKTPLMWS 108
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 98.7 bits (247), Expect = 1e-23
Identities = 43/148 (29%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 3 SGATINVE-----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHR 57
A + L AA N +L+ L + + T L +A +N
Sbjct: 13 PSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG-RKSTPLHLAAGYNR- 70
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY 116
IV LLL +GADV+ K G LH AC + H + + LL+HGA
Sbjct: 71 -----------VRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYE--VTELLLKHGACV 117
Query: 117 NVVDGKTGKTPLLHA-GKGAREVNTVLL 143
N +D TPL A K EV ++LL
Sbjct: 118 NAMD-LWQFTPLHEAASKNRVEVCSLLL 144
Score = 96.8 bits (242), Expect = 6e-23
Identities = 42/177 (23%), Positives = 62/177 (35%), Gaps = 52/177 (29%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHR-- 57
GA +N + TPL A N + + LL G D G++A+ +A R
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC-HGKSAVDMAPTPELRER 172
Query: 58 -----------HIAA---------LLIHHGA-----------------------KEIVDL 74
A L K++ +L
Sbjct: 173 LTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAEL 232
Query: 75 LLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
LL GA+VN K+ T LH+A +D ++ L +HGA N +D G+T L A
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAAERAHND-VMEVLHKHGAKMNALD-SLGQTALHRA 287
Score = 95.3 bits (238), Expect = 2e-22
Identities = 36/136 (26%), Positives = 53/136 (38%), Gaps = 22/136 (16%)
Query: 3 SGATINVE----LTPLCAAVW---DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFN 55
+ T L AV ++ E LLR G +VNEK K D T L VA
Sbjct: 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK-DFMTPLHVAAERA 258
Query: 56 HRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAY 115
H +++++L +GA +N + G TALH A R LL +G+
Sbjct: 259 H------------NDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQ-TCRLLLSYGSD 305
Query: 116 YNVVDGKTGKTPLLHA 131
+++ G T
Sbjct: 306 PSIIS-LQGFTAAQMG 320
Score = 93.3 bits (233), Expect = 9e-22
Identities = 33/132 (25%), Positives = 48/132 (36%), Gaps = 26/132 (19%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +N +TPL A + ++E L + G +N G+TAL A H
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDS-LGQTALHRAALAGH--- 292
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
+ LLL G+D + S GFTA M V+++L +
Sbjct: 293 ---------LQTCRLLLSYGSDPSIISLQGFTAAQMGNE------AVQQILSEST---PM 334
Query: 120 DGKTGKTPLLHA 131
LL A
Sbjct: 335 RTSDVDYRLLEA 346
Score = 87.2 bits (217), Expect = 1e-19
Identities = 34/152 (22%), Positives = 50/152 (32%), Gaps = 38/152 (25%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA ++ + L PL A + + E LL+ G VN T L A N
Sbjct: 81 GADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL-WQFTPLHEAASKNR--- 136
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACR--------------------F 99
E+ LLL +GAD + G +A+ MA
Sbjct: 137 ---------VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187
Query: 100 HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
D + V+K L ++ +T L A
Sbjct: 188 EADLAKVKKTLALEIINFKQP-QSHETALHCA 218
Score = 67.9 bits (167), Expect = 6e-13
Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 16/107 (14%)
Query: 26 VEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFK 85
L + L A N + ALL + +
Sbjct: 7 ALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL------------NVNCHAS 54
Query: 86 SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
T LH+A + IV+ LL+HGA + D K G PL +A
Sbjct: 55 DGRKSTPLHLAAGYNRVR--IVQLLLQHGADVHAKD-KGGLVPLHNA 98
Score = 54.8 bits (133), Expect = 1e-08
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 129
+ L D A L A R +++ ++ L + D TPL
Sbjct: 5 KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASD-GRKSTPLH 63
Query: 130 HA-GKGAREVNTVLL 143
A G + +LL
Sbjct: 64 LAAGYNRVRIVQLLL 78
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 95.7 bits (239), Expect = 2e-23
Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
T L A + +VE L+ G DVN + +GRTAL +AV + +
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN------------PD 165
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
+V LLL GADVN + G++ + I ++L + + +
Sbjct: 166 LVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR-IQQQLGQLTLENLQML-PESEDEE 221
Score = 87.6 bits (218), Expect = 2e-20
Identities = 41/153 (26%), Positives = 60/153 (39%), Gaps = 29/153 (18%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTG------HDVNEKMKLDGRTALFVAVH 53
G + TPL A + V L ++ + +G T L
Sbjct: 68 GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY-NGHTCL----- 121
Query: 54 FNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSAT-GFTALHMACRFHDDDSIVRKLLRH 112
H+A+ HG IV+LL+ GADVN + G TALH+A + D +V LL+
Sbjct: 122 ----HLAS---IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD-LVSLLLKC 173
Query: 113 GAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 143
GA N V G +P G+ + + L
Sbjct: 174 GADVNRVT-YQGYSP-YQLTWGRPSTRIQQQLG 204
Score = 85.3 bits (212), Expect = 1e-19
Identities = 26/129 (20%), Positives = 42/129 (32%), Gaps = 23/129 (17%)
Query: 12 TPLCAAVWDNN----IRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHG 67
+ L A+ + ++ + +N + +T L +AV N
Sbjct: 10 SFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN-LQQTPLHLAVITNQ----------- 57
Query: 68 AKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDG-----K 122
EI + LL G D + G T LH+AC V L + ++
Sbjct: 58 -PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA-SVGVLTQSCTTPHLHSILKATNY 115
Query: 123 TGKTPLLHA 131
G T L A
Sbjct: 116 NGHTCLHLA 124
Score = 71.4 bits (176), Expect = 1e-14
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
DG + L +A+ + + E++ + + A +NF++ T LH+A +
Sbjct: 7 DGDSFLHLAIIHEEKAL--------TMEVIRQVKGDLAFLNFQNNLQQTPLHLAVI-TNQ 57
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLH--AGKGAREVNTVLL 143
I LL G + D G TP LH +G VL
Sbjct: 58 PEIAEALLGAGCDPELRD-FRGNTP-LHLACEQGCLASVGVLT 98
Score = 69.5 bits (171), Expect = 6e-14
Identities = 19/98 (19%), Positives = 26/98 (26%), Gaps = 18/98 (18%)
Query: 4 GATINVE-----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA +N + T L AV N LV LL+ G DVN G +
Sbjct: 140 GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTY-QGYSPY---------Q 189
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMA 96
+ + I L +
Sbjct: 190 LTW---GRPSTRIQQQLGQLTLENLQMLPESEDEESYD 224
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 93.2 bits (233), Expect = 2e-23
Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 24/146 (16%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
+ T L ++ + + LL+ G N + G + + A
Sbjct: 26 LVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDT-SGTSPVHDAARTGF--- 80
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
+ + +L+++GADVN TG +H+A + H +V L + +
Sbjct: 81 ---------LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTA--VV-SFLAAESDLHR 128
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLL 143
D G TPL A +GA+++ +L
Sbjct: 129 RD-ARGLTPLELALQRGAQDLVDILQ 153
Score = 91.3 bits (228), Expect = 1e-22
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 19/122 (15%)
Query: 12 TPLCAAVWDNNIRLVEYLL-RTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
L A +++ V LL R + + G+TAL + G+
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNR-FGKTAL---------QVMM----FGSTA 49
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 129
I LL GA N + +G + +H A R D ++ L+ HGA NV D TG P+
Sbjct: 50 IALELLKQGASPNVQDTSGTSPVHDAARTGFLD--TLKVLVEHGADVNVPD-GTGALPIH 106
Query: 130 HA 131
A
Sbjct: 107 LA 108
Score = 65.5 bits (161), Expect = 3e-13
Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 15/101 (14%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 103
L A +E+ LL + + G TAL +
Sbjct: 2 AGDRLSGAAARGDV-----------QEVRRLLHRELVHPDALNRFGKTALQVMMFGSTA- 49
Query: 104 SIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
I +LL+ GA NV D +G +P+ A G + VL+
Sbjct: 50 -IALELLKQGASPNVQD-TSGTSPVHDAARTGFLDTLKVLV 88
Score = 55.5 bits (135), Expect = 1e-09
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
GA +NV P+ AV + + +V +L D++ + G T L +A+ + +
Sbjct: 91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDA-RGLTPLELALQRGAQDL 148
Query: 60 AALLIHH 66
+L H
Sbjct: 149 VDILQGH 155
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 95.4 bits (238), Expect = 3e-23
Identities = 31/147 (21%), Positives = 52/147 (35%), Gaps = 22/147 (14%)
Query: 4 GATINVE---LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIA 60
G + L L + + LV+ ++ D + +G TAL AV H
Sbjct: 28 GMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND-EGITALHNAVCAGH---- 82
Query: 61 ALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVV 119
EIV L+ G +VN + G+T LH A + + + L+ GA +
Sbjct: 83 --------TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ--VCKFLVESGAAVFAM 132
Query: 120 DGKTGKTPL-LH--AGKGAREVNTVLL 143
+T +G + + L
Sbjct: 133 TYSDMQTAADKCEEMEEGYTQCSQFLY 159
Score = 90.8 bits (226), Expect = 1e-21
Identities = 26/163 (15%), Positives = 50/163 (30%), Gaps = 34/163 (20%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
++ +T L AV + +V++L++ G +VN DG T L A N+ +
Sbjct: 60 VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS-DGWTPLHCAASCNNVQV 118
Query: 60 AALLIHHGA------------------------KEIVDLLLDNGADVNFKSATGFTALHM 95
L+ GA + L + + AL
Sbjct: 119 CKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWD 178
Query: 96 ACRFHDDDSIVRKLLRHGAYYNVVD-GKTGKTPLLHAGKGARE 137
+DD+ ++ G ++ + A +E
Sbjct: 179 YEPQNDDE----LPMKEGDCMTIIHREDEDEIEWWWARLNDKE 217
Score = 85.4 bits (212), Expect = 1e-19
Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 18/121 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
L N + + G V L + ++
Sbjct: 7 VSLPPGKRTNLRKTGSERIAHGMRVKFNP--LPLALLLDSSLEGE------------FDL 52
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
V ++ D + + G TALH A H + IV+ L++ G N D G TPL
Sbjct: 53 VQRIIYEVDDPSLPNDEGITALHNAVCAGHTE--IVKFLVQFGVNVNAAD-SDGWTPLHC 109
Query: 131 A 131
A
Sbjct: 110 A 110
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 95.6 bits (239), Expect = 3e-23
Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 17/121 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TP+ A ++ LV+ LL G D+N + + L A +I
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIRDN-EENICLHWAAFSGC------------VDI 159
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
++LL D++ + G + LH+A R D V L + + + K G+TPL
Sbjct: 160 AEILLAAKCDLHAVNIHGDSPLHIAARENRYD--CVVLFLSRDSDVTLKN-KEGETPLQC 216
Query: 131 A 131
A
Sbjct: 217 A 217
Score = 95.2 bits (238), Expect = 4e-23
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 22/134 (16%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTG-HDVNEKMKLDGRTALFVAVHFNHRH 58
GA ++ + T L A + +V+YLL G DVN + G T + A + H
Sbjct: 67 GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKH-- 123
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 117
++V LLL G+D+N + LH A D I LL +
Sbjct: 124 ----------VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVD--IAEILLAAKCDLH 171
Query: 118 VVDGKTGKTPLLHA 131
V+ G +PL A
Sbjct: 172 AVN-IHGDSPLHIA 184
Score = 92.5 bits (231), Expect = 3e-22
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 18/122 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
+PL AA ++ + L++ G +++ + D RT L A NH E
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNH------------LEA 59
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYY-NVVDGKTGKTPLL 129
V L+ GA V+ K A G T LH+A + H + +V+ LL +G N D G TP++
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYE--VVQYLLSNGQMDVNCQD-DGGWTPMI 116
Query: 130 HA 131
A
Sbjct: 117 WA 118
Score = 85.2 bits (212), Expect = 1e-19
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 18/115 (15%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G+ IN+ E L A + + + E LL D++ G + L +A N
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI-HGDSPLHIAARENR--- 189
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
+ V L L +DV K+ G T L A + ++ +
Sbjct: 190 ---------YDCVVLFLSRDSDVTLKNKEGETPLQCASL-NSQVWSALQMSKALQ 234
Score = 77.1 bits (191), Expect = 1e-16
Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 30/119 (25%)
Query: 35 DVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALH 94
+ + + + R+ L A H +I +L+ GA+++ S T L
Sbjct: 3 NFKMEHQ-NKRSPLHAAAEAGH------------VDICHMLVQAGANIDTCSEDQRTPLM 49
Query: 95 MACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-------------GKGAREVN 139
A H + V+ L++ GA + D G T L A G +VN
Sbjct: 50 EAAENNHLE--AVKYLIKAGALVDPKD-AEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN 105
Score = 56.3 bits (137), Expect = 2e-09
Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 17/82 (20%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
++ +PL A +N V L DV K K +G T L A +
Sbjct: 167 KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK-EGETPLQCASLNSQ--- 222
Query: 60 AALLIHHGAKEIVDLLLDNGAD 81
+ D
Sbjct: 223 ---------VWSALQMSKALQD 235
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 96.8 bits (242), Expect = 3e-23
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 20/132 (15%)
Query: 4 GATINV---ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIA 60
V + AA + V LL G D+N DG TAL A ++
Sbjct: 31 RKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV-DGLTALHQACIDDN---- 85
Query: 61 ALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVV 119
++V L++NGA++N G+ LH A + D I L+ GA+ V
Sbjct: 86 --------VDMVKFLVENGANINQPDNEGWIPLHAAASCGYLD--IAEYLISQGAHVGAV 135
Query: 120 DGKTGKTPLLHA 131
+ G TPL A
Sbjct: 136 N-SEGDTPLDIA 146
Score = 83.7 bits (208), Expect = 1e-18
Identities = 29/129 (22%), Positives = 44/129 (34%), Gaps = 20/129 (15%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
G I ++L + K G TAL VA +
Sbjct: 163 GVDIE---AARKEEERIMLRDARQWLNSGHINDVRHAK-SGGTALHVAAAKGY------- 211
Query: 64 IHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGK 122
E++ LL+ DVN K G+T LH A + ++ R L+ + V+ K
Sbjct: 212 -----TEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE--ACRILVENLCDMEAVN-K 263
Query: 123 TGKTPLLHA 131
G+T A
Sbjct: 264 VGQTAFDVA 272
Score = 81.0 bits (201), Expect = 1e-17
Identities = 23/127 (18%), Positives = 42/127 (33%), Gaps = 20/127 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
T L A +++ L++ +DVN K DG T L A H+
Sbjct: 189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDY-DGWTPLHAAAHWGK--- 244
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVV 119
+E +L++N D+ + G TA +A + +
Sbjct: 245 ---------EEACRILVENLCDMEAVNKVGQTAFDVADEDILGY-LEELQKKQNL--LHS 292
Query: 120 DGKTGKT 126
+ + K+
Sbjct: 293 EKREKKS 299
Score = 76.8 bits (190), Expect = 4e-16
Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 16/120 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
W + +E + K DG L A L+
Sbjct: 10 RNEQLKRWIGSETDLEPPVVKRKKTKVKFD-DGAVFLA-ACSSGDTEEVLRLLER----- 62
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
GAD+N+ + G TALH AC + D +V+ L+ +GA N D G PL A
Sbjct: 63 -------GADINYANVDGLTALHQACIDDNVD-MVKFLVENGANINQPD-NEGWIPLHAA 113
Score = 57.1 bits (139), Expect = 2e-09
Identities = 16/89 (17%), Positives = 26/89 (29%), Gaps = 15/89 (16%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
+ + G++ ++ + K G AC D
Sbjct: 7 KQKRNE---------QLKRW---IGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDT 53
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ V +LL GA N + G T L A
Sbjct: 54 E-EVLRLLERGADINYAN-VDGLTALHQA 80
Score = 27.5 bits (62), Expect = 6.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 248 KNDAGETILDIAKKRGFPLLEELEKKLADANND 280
N G+T D+A + LEEL+KK +++
Sbjct: 261 VNKVGQTAFDVADEDILGYLEELQKKQNLLHSE 293
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 93.3 bits (233), Expect = 8e-23
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 18/122 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
L AA + ++ E L T + V+E +G T L +AVH N EI
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDT-EGNTPLNIAVHNND------------IEI 54
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAY-YNVVDGKTGKTPLL 129
L+D GAD+N +++ + A + I+ +L+H N + + G L+
Sbjct: 55 AKALIDRGADINLQNSISDSPYLYAGAQGRTE--ILAYMLKHATPDLNKHN-RYGGNALI 111
Query: 130 HA 131
A
Sbjct: 112 PA 113
Score = 91.0 bits (227), Expect = 5e-22
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 24/138 (17%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTG-HDVNEKMKLDGRTALFVAVHFNHRH 58
GA IN++ +P A ++ Y+L+ D+N+ + G AL A H
Sbjct: 62 GADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR-YGGNALIPAAEKGH-- 118
Query: 59 IAALLIHHGAKEIVDLLLDNG-ADVNFKSATGFTALHMACRFHDDDS----IVRKLLRHG 113
+ V LLL++G D++F++ G+TAL A + + IV+ L+ +G
Sbjct: 119 ----------IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168
Query: 114 AYYNVVDGKTGKTPLLHA 131
A ++ D +G+T + +A
Sbjct: 169 ADQSIKD-NSGRTAMDYA 185
Score = 76.7 bits (190), Expect = 9e-17
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGH-DVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
L A +I V+ LL G D++ + G TAL AV + ++
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQND-FGYTALIEAVGLREGN-------QLYQD 159
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
IV LL++NGAD + K +G TA+ A + + I + L ++
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTE-ISKILAQY 200
Score = 36.7 bits (86), Expect = 0.004
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 85 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
K+ L A + + L + VD G TPL A
Sbjct: 2 KTYEVGALLEAANQRDTKK-VKEILQDTTYQVDEVD-TEGNTPLNIA 46
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 95.7 bits (239), Expect = 2e-22
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 30/148 (20%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G + ++ T L A + +YL G + G+ + +AV N +
Sbjct: 43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW---HGQKPIHLAVMANKTDL 99
Query: 60 AALLIHHGA---------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDS 104
L+ +E+ + K G TALH +
Sbjct: 100 VVALVEGAKERGQMPESLLNECDEREVN------EIGSHVKHCKGQTALHWCVGLGPEYL 153
Query: 105 -IVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+++ L++ GA D K +TPL+ A
Sbjct: 154 EMIKILVQLGASPTAKD-KADETPLMRA 180
Score = 93.4 bits (233), Expect = 1e-21
Identities = 21/164 (12%), Positives = 44/164 (26%), Gaps = 43/164 (26%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
++ + L A+ N + + G DVN + + L+++V +
Sbjct: 201 SLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDN-EHTVPLYLSVRAAMVLL 259
Query: 60 AALLI-------------HHGA---------------------KEIVDLLLDNGADVNFK 85
L+ H+G +E++ LL + +V
Sbjct: 260 TKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRS 319
Query: 86 SATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
TG + + R L A ++
Sbjct: 320 LNTGAGGAVKRKKKAAPA--VKRMKLAPSAPVRTRS-RSRARSS 360
Score = 89.2 bits (222), Expect = 3e-20
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 25/142 (17%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRT-----GHDVNEKMKLDGRTALFVAVHF 54
GA+ + TPL A+ N ++ ++ T ++ K G + L A+
Sbjct: 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK-QGNSHLHWAILI 221
Query: 55 NHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
N +++ ++ G DVN + L+++ R + ++LL+
Sbjct: 222 NW------------EDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVL-LTKELLQKTD 268
Query: 115 YYNVVD--GKTGKTPLLHAGKG 134
+ + G T L
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVW 290
Score = 88.4 bits (220), Expect = 7e-20
Identities = 27/147 (18%), Positives = 42/147 (28%), Gaps = 32/147 (21%)
Query: 1 MFSGATINVE------LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHF 54
M +N + + A V L+ TG + + G TAL +A F
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR-FGCTALHLACKF 63
Query: 55 NHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHG 113
+ L G + G +H+A D +V L+
Sbjct: 64 GC------------VDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTD--LVVALVEGA 107
Query: 114 AYYNVVDGKTGKTPLLHA-GKGAREVN 139
+ G+ P REVN
Sbjct: 108 K-------ERGQMPESLLNECDEREVN 127
Score = 84.5 bits (210), Expect = 1e-18
Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 36/166 (21%)
Query: 4 GATINVE--LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAA 61
G ++ P+ AV N LV L+ + G+ + + R +
Sbjct: 76 GEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKE-------RGQMPESLLNECDEREVNE 128
Query: 62 LLIH----------HGA-------KEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDD 103
+ H H E++ +L+ GA K T L A F + +
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNRE- 187
Query: 104 SIVRKLL-----RHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
+ ++ + + + K G + L A +V +
Sbjct: 188 -ALDLMMDTVPSKSSLRLDYAN-KQGNSHLHWAILINWEDVAMRFV 231
Score = 74.5 bits (184), Expect = 4e-15
Identities = 12/98 (12%), Positives = 29/98 (29%), Gaps = 17/98 (17%)
Query: 3 SGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
+G T+ + L + AA + +++ L +V + G
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLN-TGAGGAVKRKKKAA-- 335
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMA 96
+ + L A V +S + + ++
Sbjct: 336 ----------PAVKRMKLAPSAPVRTRSRSRARSSAVS 363
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 92.9 bits (232), Expect = 2e-22
Identities = 33/139 (23%), Positives = 50/139 (35%), Gaps = 27/139 (19%)
Query: 4 GATINVE-------LTPLCAAVWDNNIRLVEYLL--RTGHDVNEKMKLDGRTALFVAVHF 54
+N++ TP A N+ +V+ L D+N+ G T L +AV
Sbjct: 59 MENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN-QGVTCLHLAVGK 117
Query: 55 NHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
E+ L++NGA V K LH A ++ L G
Sbjct: 118 KW------------FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLK-LIELLCGLGK 164
Query: 115 YYNVVDGKT--GKTPLLHA 131
+ V+ + G TPL HA
Sbjct: 165 --SAVNWQDKQGWTPLFHA 181
Score = 84.8 bits (211), Expect = 1e-19
Identities = 32/127 (25%), Positives = 45/127 (35%), Gaps = 23/127 (18%)
Query: 12 TPLCAAVWDNNIRLV-EYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
PL A +N V E L + +K + DGR L +V F E
Sbjct: 4 YPLHQACMENEFFKVQELLHSKPSLLLQKDQ-DGRIPLHWSVSFQA------------HE 50
Query: 71 IVDLLLDNGADVNFKSAT---GFTALHMACRF-HDDDSIVRKLLRH--GAYYNVVDGKTG 124
I LL +VN G+T H+AC + + +V+ L N + G
Sbjct: 51 ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLE--VVKSLYDRPLKPDLNKIT-NQG 107
Query: 125 KTPLLHA 131
T L A
Sbjct: 108 VTCLHLA 114
Score = 73.6 bits (182), Expect = 1e-15
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 23/115 (20%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGH-DVNEKMKLDGRTALFVAVHFNHRH 58
GA++ ++ PL A +++L+E L G VN + K G T LF A+ H
Sbjct: 130 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK-QGWTPLFHALAEGH-- 186
Query: 59 IAALLIHHGAKEIVDLLLDN-GADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
+ LL++ GA+ + G A +A + + + L +
Sbjct: 187 ----------GDAAVLLVEKYGAEYDLVDNKGAKAEDVALN----EQVKKFFLNN 227
Score = 69.8 bits (172), Expect = 3e-14
Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 14/90 (15%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 103
L A N ++ +LL + + K G LH + F +
Sbjct: 2 SNYPLHQACMENE-----------FFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHE 50
Query: 104 SIVRKLLRHGAYYNVVDGKT--GKTPLLHA 131
I LL N+ D G TP A
Sbjct: 51 -ITSFLLSKMENVNLDDYPDDSGWTPFHIA 79
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 88.6 bits (221), Expect = 3e-22
Identities = 45/105 (42%), Positives = 59/105 (56%), Gaps = 16/105 (15%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A + ++ +V+ LL G DVN K K +GRT L H+AA +G E+
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAKDK-NGRTPL---------HLAA---RNGHLEV 50
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAY 115
V LLL+ GADVN K G T LH+A R H + +V+ LL GAY
Sbjct: 51 VKLLLEAGADVNAKDKNGRTPLHLAARNGHLE--VVKLLLEAGAY 93
Score = 72.4 bits (179), Expect = 3e-16
Identities = 37/90 (41%), Positives = 46/90 (51%), Gaps = 16/90 (17%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 101
+GRT L +A H E+V LLL+ GADVN K G T LH+A R H
Sbjct: 1 NGRTPLHLAARNGH------------LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHL 48
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ +V+ LL GA N D K G+TPL A
Sbjct: 49 E--VVKLLLEAGADVNAKD-KNGRTPLHLA 75
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 90.6 bits (226), Expect = 4e-22
Identities = 27/134 (20%), Positives = 36/134 (26%), Gaps = 21/134 (15%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
D + DV + T + A + L+
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLLE------ 65
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
DV+ G TAL D VR L GA + D + G T L
Sbjct: 66 -------DRDVDAVDENGRTALLFVAGLGSDK--CVRLLAEAGADLDHRDMRGGLTALHM 116
Query: 131 A-GKGAREVNTVLL 143
A G EV L+
Sbjct: 117 AAGYVRPEVVEALV 130
Score = 89.1 bits (222), Expect = 2e-21
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 19/123 (15%)
Query: 3 SGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
++ T L + + V L G D++ + G TAL +A +
Sbjct: 65 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-- 122
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYN 117
E+V+ L++ GAD+ + G TAL +A ++ G
Sbjct: 123 ----------PEVVEALVELGADIEVEDERGLTALELAREILKTT--PKGNPMQFGRRIG 170
Query: 118 VVD 120
+
Sbjct: 171 LEK 173
Score = 70.2 bits (173), Expect = 1e-14
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 4 GATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA ++ LT L A +VE L+ G D+ + + G TAL +A
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE-RGLTALELAREILKTT 157
Query: 59 IAALLIHHGA----KEIVDLLLDN 78
+ G ++++++L
Sbjct: 158 PKGNPMQFGRRIGLEKVINVLEGQ 181
Score = 58.7 bits (143), Expect = 1e-10
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 19/102 (18%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDD 102
+G + H ADV + T A R D+
Sbjct: 13 EGAMEYLIEWKDGH------------SPSWVPSSYIAADVV---SEYETPWWTAARKADE 57
Query: 103 DSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
+ +LL + VD + G+T LL G G+ + +L
Sbjct: 58 Q-ALSQLL-EDRDVDAVD-ENGRTALLFVAGLGSDKCVRLLA 96
Score = 32.1 bits (74), Expect = 0.13
Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAR 136
N + + G + + A +VV +TP A K
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWK-DGHSPSWVPSSYIAA--DVVS--EYETPWWTAARKADE 57
Query: 137 EVNTVLL 143
+ + LL
Sbjct: 58 QALSQLL 64
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 91.9 bits (229), Expect = 6e-22
Identities = 26/146 (17%), Positives = 49/146 (33%), Gaps = 22/146 (15%)
Query: 3 SGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
++ T L + + V L G D++ + G TAL +A +
Sbjct: 66 EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR-- 123
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 118
E+V+ L++ GAD+ + G TAL +A ++ G +
Sbjct: 124 ----------PEVVEALVELGADIEVEDERGLTALELAREILKTT-PKGNPMQFGRRIGL 172
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLL 143
+L EV+ ++
Sbjct: 173 EK----VINVLEGQVFEYAEVDEIVE 194
Score = 89.2 bits (222), Expect = 6e-21
Identities = 27/138 (19%), Positives = 36/138 (26%), Gaps = 21/138 (15%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHG 67
D + DV + T + A + L+
Sbjct: 13 GEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE----YETPWWTAARKADEQALSQLLE-- 66
Query: 68 AKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDGKTGKT 126
DV+ G TAL D VR L GA + D + G T
Sbjct: 67 -----------DRDVDAVDENGRTALLFVAGLGSDK--CVRLLAEAGADLDHRDMRGGLT 113
Query: 127 PLLHA-GKGAREVNTVLL 143
L A G EV L+
Sbjct: 114 ALHMAAGYVRPEVVEALV 131
Score = 84.2 bits (209), Expect = 4e-19
Identities = 27/148 (18%), Positives = 49/148 (33%), Gaps = 23/148 (15%)
Query: 4 GATINV-----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
GA ++ LT L A +VE L+ G D+ + + G TAL +A
Sbjct: 100 GADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE-RGLTALELAREILKTT 158
Query: 59 IAALLIHHGA----KEIVDLLLDNG------ADVNFKSATGFTALHMACRFHDDDSIVRK 108
+ G ++++++L ++ K G ++ R+ D
Sbjct: 159 PKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLV-RWKDGGDCEWV 217
Query: 109 LLRHGAYYNVVDGKTGKTPLLH--AGKG 134
H A D + G L +
Sbjct: 218 KGVHVAEDVAKDYEDG----LEYAVAES 241
Score = 62.6 bits (153), Expect = 2e-11
Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 9/103 (8%)
Query: 44 GRTALFVAVHFNHRHIAALLI--HHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHD 101
G + LI G ADV + T A R D
Sbjct: 1 GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV---SEYETPWWTAARKAD 57
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
+ + +LL + VD + G+T LL G G+ + +L
Sbjct: 58 EQ-ALSQLL-EDRDVDAVD-ENGRTALLFVAGLGSDKCVRLLA 97
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 93.9 bits (234), Expect = 9e-22
Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 16/146 (10%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
L + + E + R ++ + RT L +
Sbjct: 84 LQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR--HNRTVLHWIASNSSAEK 140
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNV 118
+ LI H AK + GADVN T L +A +V L++ GA +
Sbjct: 141 SEDLIVHEAK----ECIAAGADVNAMDCDENTPLMLAVLARRRR--LVAYLMKAGADPTI 194
Query: 119 VDGKTGKTPLLHA-GKGAREVNTVLL 143
+ K+ ++ L A + +L
Sbjct: 195 YN-KSERSALHQAAANRDFGMMVYML 219
Score = 87.7 bits (218), Expect = 1e-19
Identities = 37/145 (25%), Positives = 61/145 (42%), Gaps = 30/145 (20%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLL---RTGHDVNEKMKLDGRTALFVAVHFNH 56
GA + E + L A + + ++ Y+L + D+ E + +G TAL
Sbjct: 189 GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR-NGMTAL-------- 239
Query: 57 RHIAALLIHHGAKEIVDLLLDNGADVNFKSAT--------GFTALHMACRF-HDDDSIVR 107
I A LL++ GA V++ A G TALH A + + IV+
Sbjct: 240 -MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMP--IVK 296
Query: 108 KLLRH-GAYYNVVDGKTGKTPLLHA 131
L+ G+ + D + GKTP++ A
Sbjct: 297 YLVGEKGSNKDKQD-EDGKTPIMLA 320
Score = 83.5 bits (207), Expect = 3e-18
Identities = 30/159 (18%), Positives = 50/159 (31%), Gaps = 30/159 (18%)
Query: 4 GATINV---ELTPLCAAVWDNNIRLVEYLLRT--------GHDVNEKMKLDGRTALFVAV 52
I T L +++ E L+ G DVN D T L +AV
Sbjct: 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-DENTPLMLAV 174
Query: 53 HFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
+ +V L+ GAD + + +ALH A + D ++ +L
Sbjct: 175 LARR------------RRLVAYLMKAGADPTIYNKSERSALHQAAA-NRDFGMMVYMLNS 221
Query: 113 ---GAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFIN 147
+D + G T L+ R+ +
Sbjct: 222 TKLKGDIEELD-RNGMTALMIVAHNEGRDQVASAKLLVE 259
Score = 82.7 bits (205), Expect = 6e-18
Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 15/104 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLR-TGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
T L A +N+ +V+YL+ G + +++ + DG+T + +A E
Sbjct: 281 TALHYAAQVSNMPIVKYLVGEKGSNKDKQDE-DGKTPIMLAAQEGR------------IE 327
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGA 114
+V L+ GA V AT TA +A + + IV R
Sbjct: 328 VVMYLIQQGASVEAVDATDHTARQLAQANNHHN-IVDIFDRCRP 370
Score = 81.2 bits (201), Expect = 2e-17
Identities = 27/143 (18%), Positives = 47/143 (32%), Gaps = 29/143 (20%)
Query: 4 GATINVE----LTPLCAAVWDNN---IRLVEYLLRTGHDVNEKMKL-------DGRTALF 49
I +T L + + + L+ G V+ GRTAL
Sbjct: 225 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALH 284
Query: 50 VAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRK 108
A ++ I L+ G++ + + G T + +A + + +V
Sbjct: 285 YAAQVSNMPIVKYLVGE-----------KGSNKDKQDEDGKTPIMLAAQEGRIE--VVMY 331
Query: 109 LLRHGAYYNVVDGKTGKTPLLHA 131
L++ GA VD T T A
Sbjct: 332 LIQQGASVEAVD-ATDHTARQLA 353
Score = 71.1 bits (175), Expect = 5e-14
Identities = 19/139 (13%), Positives = 32/139 (23%), Gaps = 27/139 (19%)
Query: 6 TINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIH 65
+I L A +D I+ NE +
Sbjct: 33 SITSSQHSLLEASYDGYIKRQR---------NELQH-YSLYPNPQGYGNGN--------- 73
Query: 66 HGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK 125
+ D N LH I + R N++D + +
Sbjct: 74 ---DFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYA--ITEPITRESV--NIIDPRHNR 126
Query: 126 TPLLHA-GKGAREVNTVLL 143
T L + E + L+
Sbjct: 127 TVLHWIASNSSAEKSEDLI 145
Score = 61.9 bits (151), Expect = 5e-11
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 5/70 (7%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G+ + TP+ A + I +V YL++ G V TA +A NH +I
Sbjct: 303 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA-TDHTARQLAQANNHHNI 361
Query: 60 AALLIHHGAK 69
+ +
Sbjct: 362 VDIFDRCRPE 371
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 90.3 bits (224), Expect = 2e-21
Identities = 48/201 (23%), Positives = 71/201 (35%), Gaps = 20/201 (9%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
+ A L E +L + D RTAL A H E
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQ-DSRTALHWACSAGH------------TE 54
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLH 130
IV+ LL G VN K G++ LH+A D IV+ LL GA+ N V+ + G TPL +
Sbjct: 55 IVEFLLQLGVPVNDKDDAGWSPLHIAA-SAGXDEIVKALLVKGAHVNAVN-QNGCTPLHY 112
Query: 131 AG-KGAREVNTVLLYFINEIFKLMANNDTTI----LDRLDEMKSLILEVTKEFGPGDYNN 185
A K E+ +LL + T + +M ++L D
Sbjct: 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEG 172
Query: 186 FSLLKVAKNDAGETILDIFFE 206
+ L +A ++
Sbjct: 173 NTPLHLACDEERVEEAKFLVT 193
Score = 81.5 bits (201), Expect = 3e-18
Identities = 42/166 (25%), Positives = 61/166 (36%), Gaps = 29/166 (17%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
+ T L A + +VE+LL+ G VN+K G + L +A I
Sbjct: 30 KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD-AGWSPLHIAASAGXDEI 88
Query: 60 AALLIHHGA---------------------KEIVDLLLDNGADVNFKSATGFTALHMACR 98
L+ GA EI +LL+ GA+ + K TA+H A
Sbjct: 89 VKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148
Query: 99 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGK-GAREVNTVLL 143
+ +V LL + A N+ D G TPL A E L+
Sbjct: 149 KGNLK-MVHILLFYKASTNIQD-TEGNTPLHLACDEERVEEAKFLV 192
Score = 74.5 bits (183), Expect = 8e-16
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 29/165 (17%)
Query: 4 GATINV----ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G +N +PL A +V+ LL G VN + +G T L A N I
Sbjct: 63 GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEI 121
Query: 60 AALLIHHGA---------------------KEIVDLLLDNGADVNFKSATGFTALHMACR 98
A +L+ GA ++V +LL A N + G T LH+AC
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACD 181
Query: 99 FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLL 143
+ + L+ GA + + K KTP L KG + L
Sbjct: 182 -EERVEEAKFLVTQGASIYIEN-KEEKTP-LQVAKGGLGLILKRL 223
Score = 68.0 bits (166), Expect = 2e-13
Identities = 24/128 (18%), Positives = 42/128 (32%), Gaps = 25/128 (19%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA--- 68
TPL A N + LL G + + K TA+ A + + +L+ + A
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDH-YDATAMHRAAAKGNLKMVHILLFYKASTN 166
Query: 69 ------------------KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLL 110
E L+ GA + ++ T L +A ++ K L
Sbjct: 167 IQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLG---LILKRL 223
Query: 111 RHGAYYNV 118
G ++
Sbjct: 224 AEGEEASM 231
Score = 66.8 bits (163), Expect = 5e-13
Identities = 33/170 (19%), Positives = 55/170 (32%), Gaps = 21/170 (12%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HD 101
+A E+ + +L + + TALH AC H
Sbjct: 6 SNIMICNLAYSGKL------------DELKERILADKSLATRTDQDSRTALHWACSAGHT 53
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHA-GKGAREVNTVLLYFINEIFKLMANNDTTI 160
+ IV LL+ G N D G +PL A G E+ LL + + N T +
Sbjct: 54 E--IVEFLLQLGVPVNDKD-DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPL 110
Query: 161 ----LDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFE 206
E+ ++LE D+ + + + A ++ I
Sbjct: 111 HYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF 160
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 88.1 bits (219), Expect = 1e-20
Identities = 35/154 (22%), Positives = 47/154 (30%), Gaps = 29/154 (18%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHR-------------- 57
+ A++ R + L D+ T +
Sbjct: 14 VKVFRALYTFEPRTPDELYIEEGDIIYITD-MSDTNWWKGTSKGRTGLIPSNYVAEQAES 72
Query: 58 -----HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLR 111
H AA G + LDN VN G TAL+ AC H D IV L
Sbjct: 73 IDNPLHEAA---KRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKD--IVEMLFT 127
Query: 112 H-GAYYNVVDGKTGKTPLLHA-GKGAREVNTVLL 143
N + K G T L A KG ++ +LL
Sbjct: 128 QPNIELNQQN-KLGDTALHAAAWKGYADIVQLLL 160
Score = 87.7 bits (218), Expect = 1e-20
Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 21/138 (15%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLL-RTGHDVNEKMKLDGRTALFVAVHFNHRH 58
+N T L A + +VE L + ++N++ K G TAL A +
Sbjct: 96 RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK-LGDTALHAAAWKGY-- 152
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNV 118
+IV LLL GA + ++ A MA S+++K A +
Sbjct: 153 ----------ADIVQLLLAKGARTDLRNIEKKLAFDMATN-AACASLLKKKQGTDAVRTL 201
Query: 119 VDGKTGKTPLLHA-GKGA 135
+ + +
Sbjct: 202 SN-AEDYLDDEDSDLEHH 218
Score = 66.9 bits (164), Expect = 3e-13
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
+N + T L AA W +V+ LL G + + + + A +A + +
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI-EKKLAFDMATNAACASL 188
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALH 94
A L + ++ + + H
Sbjct: 189 LKKKQGTDAVR---TLSNAEDYLDDEDSDLEHHHH 220
Score = 57.6 bits (140), Expect = 5e-10
Identities = 17/116 (14%), Positives = 29/116 (25%), Gaps = 40/116 (34%)
Query: 43 DGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACR---- 98
G+ +F A++ D L D+ + + T
Sbjct: 11 PGQVKVFRALYTFE------------PRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT 58
Query: 99 -----------------------FHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ S +R+ L + N +D K G T L A
Sbjct: 59 GLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD-KAGSTALYWA 113
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 84.7 bits (210), Expect = 6e-20
Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 16/127 (12%)
Query: 10 ELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAK 69
E + AA L G++ E + L+ + N+
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESV--LKSNILYDVLRNNNDE--------ARY 55
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMACRF-----HDDDSIVRKLLRHGAYYNVVDGKTG 124
+I L++ GAD+ ++ G T + + + L GA + K
Sbjct: 56 KISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY-KPY 114
Query: 125 KTPLLHA 131
K +
Sbjct: 115 KIVVFKN 121
Score = 82.0 bits (203), Expect = 8e-19
Identities = 21/126 (16%), Positives = 39/126 (30%), Gaps = 14/126 (11%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
L + ++ +L+ G D+ + K +G T F I E+
Sbjct: 44 DVLRNNNDEARYKISMFLINKGADIKSRTK-EGTTLFFPLFQGGGNDITGTT------EL 96
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDS-----IVRKLLRH-GAYYNVVDGKTGK 125
+ L+ GAD+ + + D + + + G + D K G
Sbjct: 97 CKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD-KWGL 155
Query: 126 TPLLHA 131
T L
Sbjct: 156 TALEFV 161
Score = 76.3 bits (188), Expect = 1e-16
Identities = 20/128 (15%), Positives = 37/128 (28%), Gaps = 19/128 (14%)
Query: 4 GATINVE----LTPLCAAVWDNN------IRLVEYLLRTGHDVNEKMKLDGRTALFVAVH 53
GA I T L + L G D+ K + +F +
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK-PYKIVVFKNIF 123
Query: 54 FNHRHIAALLIHHGAKEIVDLLLD-NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRH 112
++ + L+ +G + K G TAL R ++ + +
Sbjct: 124 NYFVDENEMI------PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPI-ALKMMEDY 176
Query: 113 GAYYNVVD 120
YN+ +
Sbjct: 177 IKKYNLKE 184
Score = 49.3 bits (118), Expect = 2e-07
Identities = 33/239 (13%), Positives = 53/239 (22%), Gaps = 63/239 (26%)
Query: 42 LDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHD 101
+ + A L G + KS + L
Sbjct: 4 MSEYRTVSAAAMLGTYEDFLELFEKGY---------EDKESVLKSNILYDVLRNNND-EA 53
Query: 102 DDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTIL 161
I L+ GA K G T I
Sbjct: 54 RYKISMFLINKGADIKSRT-KEGTTLFFPL---------------------FQGGGNDIT 91
Query: 162 DRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDE 221
+ K + E G D A + ++ F+ I + +
Sbjct: 92 GTTELCKIFL-----EKG-ADIT-------ALYKPYKIVV---FKNIFNYFVDENEMIPL 135
Query: 222 MKSIKLELTKAFGPG-DYNNFSLLKVTKNDAGETILDIAKKRGFP-LLEELEKKLADAN 278
K I + G K+ G T L+ K+ P L+ +E + N
Sbjct: 136 YKLIFSQ------SGLQLL-------IKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181
Score = 33.5 bits (77), Expect = 0.049
Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 4/47 (8%)
Query: 85 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
+ + + + A + +L G K+ +L+
Sbjct: 2 NAMSEYRTVSAAAMLGTYE-DFLELFEKGYEDKESV---LKSNILYD 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 85.0 bits (211), Expect = 1e-19
Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 32/142 (22%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEK------------MKLDGRTALFVAVHFNHRHI 59
T L AV + N+ LV LL G V+ + + G L A
Sbjct: 77 TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS--- 133
Query: 60 AALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD---SIVRKLLRHGAYY 116
+EIV LL+++GAD+ + + G T LH+ + + LL +
Sbjct: 134 ---------EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184
Query: 117 NVVDG-----KTGKTPLLHAGK 133
++ G TP AG
Sbjct: 185 HLKSLELVPNNQGLTPFKLAGV 206
Score = 79.6 bits (197), Expect = 1e-17
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 32/138 (23%)
Query: 12 TPLCAAVWDNNIRLV-EYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
+PL A +N+++ + + L G +V+++ G TAL +A +++ E
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGA-MGETALHIAALYDN------------LE 51
Query: 71 IVDLLLDNGADV-----NFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD----- 120
+L++ ++ + G TALH+A + + ++VR LL GA +
Sbjct: 52 AAMVLMEAAPELVFEPMTSELYEGQTALHIAVI-NQNVNLVRALLARGASVSARATGSVF 110
Query: 121 -------GKTGKTPLLHA 131
G+ PL A
Sbjct: 111 HYRPHNLIYYGEHPLSFA 128
Score = 61.1 bits (149), Expect = 4e-11
Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 103
+ L +A N + + LL G +V+ + A G TALH+A +D+
Sbjct: 3 WESPLLLAAKENDV-----------QALSKLLKFEGCEVHQRGAMGETALHIAA-LYDNL 50
Query: 104 SIVRKLLRHGA-----YYNVVDGKTGKTPLLHA 131
L+ G+T L A
Sbjct: 51 EAAMVLMEAAPELVFEPMTSEL-YEGQTALHIA 82
Score = 53.8 bits (130), Expect = 1e-08
Identities = 13/93 (13%), Positives = 23/93 (24%), Gaps = 25/93 (26%)
Query: 4 GATINVE----LTPLCAAVWDNN----IRLVEYLLRTGHDVNEKMKL-----DGRTALFV 50
GA I + T L + N ++ LL + K G T +
Sbjct: 144 GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203
Query: 51 AVHFNHRHIAALLIHHGAKEIVDLLLDNGADVN 83
A + + L+ +
Sbjct: 204 AGVEGN------------IVMFQHLMQKRKHIA 224
Score = 30.7 bits (70), Expect = 0.56
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEK 39
LTP A + NI + ++L++ +
Sbjct: 198 LTPFKLAGVEGNIVMFQHLMQKRKHIAAA 226
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 81.1 bits (201), Expect = 3e-19
Identities = 31/123 (25%), Positives = 44/123 (35%), Gaps = 22/123 (17%)
Query: 17 AVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLL 76
++ L+ G + D L A + V +L+
Sbjct: 1 GSSHHHHHHSSGLVPRGSHMGS----DLGKKLLEAARAGQ------------DDEVRILM 44
Query: 77 DNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDG-KTGKTPLLHAGKG 134
NGADV K G T LH+A R H + +V+ LL GA +V K GKT +
Sbjct: 45 ANGADVAAKDKNGSTPLHLAARNGHLE--VVKLLLEAGA--DVXAQDKFGKTAFDISIDN 100
Query: 135 ARE 137
E
Sbjct: 101 GNE 103
Score = 73.4 bits (181), Expect = 2e-16
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 4 GATINVEL-TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAAL 62
G+ + +L L A V L+ G DV K K +G T L +A H
Sbjct: 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDK-NGSTPLHLAARNGH------ 69
Query: 63 LIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSI 105
E+V LLL+ GADV + G TA ++ ++D
Sbjct: 70 ------LEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLA 106
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 78.1 bits (192), Expect = 1e-16
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 16/122 (13%)
Query: 15 CAAVWDNNIRLVEYLLRTGHDVNEKMKL-----DGRTALFVAVHFNHRHIAALLIHHGAK 69
A+ + ++ V G D + + L H+A + + +
Sbjct: 156 WTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVL---------HLAVKVANQASL 206
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 129
+VD ++ NG ++ K+A G TALH A ++ ++ LL+ A V+ + G+T L
Sbjct: 207 PLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVN-EAGETALD 264
Query: 130 HA 131
A
Sbjct: 265 IA 266
Score = 53.1 bits (127), Expect = 4e-08
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 15/101 (14%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
L ++ LV+++++ G ++ K DG TAL H AAL + +
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAA-DGNTAL---------HYAAL---YNQPD 240
Query: 71 IVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLR 111
+ LLL A V + G TAL +A + H + LL
Sbjct: 241 CLKLLLKGRALVGTVNEAGETALDIARKKHHKE-CEE-LLE 279
Score = 40.4 bits (94), Expect = 5e-04
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHI 59
G ++ + T L A N ++ LL+ V + G TAL +A +H+
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNE-AGETALDIARKKHHKEC 274
Query: 60 AALLIHHGAKE 70
LL A
Sbjct: 275 EELLEQAQAGT 285
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 77.5 bits (191), Expect = 2e-16
Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 36/149 (24%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMK-------------LDGRTALFVAVHFNHRH 58
T L A+ N+ LV L+ G DV G L +A N
Sbjct: 103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD--------SIVRKLL 110
I L+ + AD++ + + G T LH D+ S+ ++L
Sbjct: 163 IVKFLLQNSW---------QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL 213
Query: 111 RHGAYYNVVDG------KTGKTPLLHAGK 133
GA + + G TPL A
Sbjct: 214 ILGAKLHPTLKLEEITNRKGLTPLALAAS 242
Score = 68.7 bits (168), Expect = 2e-13
Identities = 47/261 (18%), Positives = 74/261 (28%), Gaps = 68/261 (26%)
Query: 12 TPLCAAVWDNNIRLVEYLLRT-------GHDVNEKMKLDGRTALFVAV---HFNHRHIAA 61
+ AV +N + +E LL D K G+T L A+ H A
Sbjct: 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIA 74
Query: 62 LLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD- 120
LL+ K N A G TALH+A + ++V L+ +GA
Sbjct: 75 LLLDVARKTDSLKQFVN-ASYTDSYYKGQTALHIAIE-RRNMTLVTLLVENGADVQAAAN 132
Query: 121 ------------GKTGKTPLLHA-GKGAREV---------------------NTVLLYFI 146
G+ PL A + NTVL +
Sbjct: 133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALV 192
Query: 147 NEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAGETIL----- 201
A+N + M + IL + + L+ N G T L
Sbjct: 193 EV-----ADNTVDNTKFVTSMYNEILILGA-----KLHPTLKLEEITNRKGLTPLALAAS 242
Query: 202 ----DIFFELI--GKNDTTIL 216
+ ++ ++
Sbjct: 243 SGKIGVLAYILQREIHEPECR 263
Score = 48.2 bits (115), Expect = 1e-06
Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 18/104 (17%)
Query: 41 KLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFK-SATGFTALHMACRF 99
+L R ++F AV ++ L+ + D FK TG T L A
Sbjct: 10 RLYDRRSIFDAVAQSNCQELESLL-----PFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64
Query: 100 HDDDS--IVRKLLRHGAYYNVVD----------GKTGKTPLLHA 131
+ + LL + + G+T L A
Sbjct: 65 LHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIA 108
Score = 45.5 bits (108), Expect = 9e-06
Identities = 14/91 (15%), Positives = 25/91 (27%), Gaps = 20/91 (21%)
Query: 8 NVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHG 67
V+ T ++++ + L L T + G T L +AA G
Sbjct: 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNR-KGLTPL---------ALAA---SSG 244
Query: 68 AKEIVDLLLDNGADVNFKSATGFTALHMACR 98
++ +L H A
Sbjct: 245 KIGVLAYILQREIH-------EPECRHAAAH 268
Score = 37.5 bits (87), Expect = 0.004
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 8/48 (16%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
LTPL A I ++ Y+L+ A H +H H
Sbjct: 234 LTPLALAASSGKIGVLAYILQREIH--------EPECRHAAAHHHHHH 273
Score = 32.8 bits (75), Expect = 0.13
Identities = 10/65 (15%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 79 GADVNFKSATGFTALHMACRFHDDDSI------VRKLLRHGAYYNVVDGKTGKTPLLHAG 132
A ++ A + + +++ + D +TGKT LL A
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 133 KGARE 137
Sbjct: 63 LNLHN 67
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 73.9 bits (181), Expect = 3e-15
Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 16/122 (13%)
Query: 15 CAAVWDNNIRLVEYLLRTGHDVNEKMKL-----DGRTALFVAVHFNHRHIAALLIHHGAK 69
C AV +I + G D+ EK+ L TAL H+A + +
Sbjct: 135 CEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL---------HLAVRSVDRTSL 185
Query: 70 EIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLL 129
IVD L+ N +++ ++ G TALH C D+ ++ LLR A + + G+TPL
Sbjct: 186 HIVDFLVQNSGNLDKQTGKGSTALHYCCL-TDNAECLKLLLRGKASIEIANES-GETPLD 243
Query: 130 HA 131
A
Sbjct: 244 IA 245
Score = 53.1 bits (127), Expect = 3e-08
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 16/90 (17%)
Query: 12 TPL---CAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGA 68
T L +V ++ +V++L++ +++++ G TAL H L
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQT-GKGSTAL---------HYCCL---TDN 217
Query: 69 KEIVDLLLDNGADVNFKSATGFTALHMACR 98
E + LLL A + + +G T L +A R
Sbjct: 218 AECLKLLLRGKASIEIANESGETPLDIAKR 247
Score = 39.2 bits (91), Expect = 0.001
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIH 65
T L +N ++ LLR + + G T L +A H H LL
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEIANE-SGETPLDIAKRLKHEHCEELLTQ 259
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 75.3 bits (185), Expect = 3e-15
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 16/123 (13%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKM-----KLDGRTALFVAVHFNHRHIAALLIHHGA 68
L A+ + ++ V G D + + + L H+A + + +
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVL---------HLAVKVANQAS 186
Query: 69 KEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
+VD ++ NG ++ K+A G TALH A ++ ++ LL+ A V+ + G+T L
Sbjct: 187 LPLVDFIIQNGGHLDAKAADGNTALHYAAL-YNQPDCLKLLLKGRALVGTVN-EAGETAL 244
Query: 129 LHA 131
A
Sbjct: 245 DIA 247
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 71.4 bits (175), Expect = 2e-14
Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 17/114 (14%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGH---DVNEKMKLDGRTALFVAVHFNHR-------HIAA 61
PL A +V YLL H + G T L V I
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDS-LGNTVLHALVMIADNSPENSALVIHM 196
Query: 62 LLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-HDDDSIVRKLLRHGA 114
+ G ++ L + G T L +A + + I R +L+
Sbjct: 197 ---YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE--IFRHILQREF 245
Score = 62.1 bits (151), Expect = 2e-11
Identities = 33/146 (22%), Positives = 48/146 (32%), Gaps = 43/146 (29%)
Query: 12 TPLCAAVW---DNNIRLVEYLLRTGHDVNEKMKL----------DGRTALFVAVHFNHRH 58
T L AV D + LL+ D L G +AL H
Sbjct: 45 TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSAL---------H 95
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGF-------------TALHMACRF-HDDDS 104
IA + + V LL++NGADV+ ++ F L +A D
Sbjct: 96 IAI---EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD-- 150
Query: 105 IVRKLLRHGAYYNVVDGKT--GKTPL 128
+V LL + ++ G T L
Sbjct: 151 VVTYLLENPHQPASLEATDSLGNTVL 176
Score = 51.3 bits (123), Expect = 1e-07
Identities = 11/66 (16%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
Query: 5 ATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLI 64
A + E + L ++D +++ L T G T L +A I ++
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNH-QGLTPLKLAAKEGKIEIFRHIL 241
Query: 65 HHGAKE 70
Sbjct: 242 QREFSG 247
Score = 35.9 bits (83), Expect = 0.011
Identities = 14/73 (19%), Positives = 20/73 (27%), Gaps = 6/73 (8%)
Query: 44 GRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDD 103
R LF V L+ + L + +TG T L A D
Sbjct: 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYL----TDSAYTEGSTGKTCLMKAVLNLQDG 57
Query: 104 S--IVRKLLRHGA 114
+ LL+
Sbjct: 58 VNACIMPLLQIDK 70
Score = 29.8 bits (67), Expect = 1.3
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 4 GATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLD 43
+ LTPL A + I + ++L+
Sbjct: 211 VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHH 254
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 70.1 bits (171), Expect = 1e-13
Identities = 27/200 (13%), Positives = 55/200 (27%), Gaps = 25/200 (12%)
Query: 16 AAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLL 75
+ + + T ++N + G T L + + L+ H
Sbjct: 103 VSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--------- 153
Query: 76 LDNGADVNFKSATGFTALHMACRFH--DDDSIVRKLLRHGAYY-NVVDGKTGKTPLLHAG 132
G++ + G + L A + D LL + + D +T L H
Sbjct: 154 ---GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED-SMNRTILHHII 209
Query: 133 KGAREVNT--VLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLK 190
+ Y+++ + + + K LK
Sbjct: 210 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK 269
Query: 191 V-------AKNDAGETILDI 203
A++ G+T L+I
Sbjct: 270 WIIANMLNAQDSNGDTCLNI 289
Score = 67.4 bits (164), Expect = 7e-13
Identities = 25/169 (14%), Positives = 54/169 (31%), Gaps = 26/169 (15%)
Query: 3 SGATINVEL-----TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHR 57
+ +N+ + TPL N+ LV++L++ G + G + L AV +
Sbjct: 119 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN-MGESCLVKAVKSVN- 176
Query: 58 HIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRF-----------HDDDSIV 106
++ + LL + + + T LH + D ++
Sbjct: 177 -------NYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILM 229
Query: 107 RKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMAN 155
+++ K + G R+ + + + I M N
Sbjct: 230 GWIVKKQNRPIQSG-TNEKESKPNDKNGERKDSILENLDLKWIIANMLN 277
Score = 58.9 bits (142), Expect = 6e-10
Identities = 29/170 (17%), Positives = 52/170 (30%), Gaps = 48/170 (28%)
Query: 4 GATINV----ELTPLCAAVWDNN---IRLVEYLLRTGH-DVNEKMKLDGRTALFVAVHFN 55
G+ + L AV N E LL + + + RT L + +
Sbjct: 154 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS-MNRTILHHIIITS 212
Query: 56 HRH------------IAALLIHHGAK-------------------------EIVDLLLDN 78
+ ++ + E +DL
Sbjct: 213 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 272
Query: 79 GADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
+N + + G T L++A R + IV LL +GA + + K+G P+
Sbjct: 273 ANMLNAQDSNGDTCLNIAARLGNIS-IVDALLDYGADPFIAN-KSGLRPV 320
Score = 57.0 bits (137), Expect = 2e-09
Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 13/86 (15%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKE 70
D+ + ++ + +N + +G T L +IAA G
Sbjct: 251 PNDKNGERKDSILENLDLKWIIANMLNAQDS-NGDTCL---------NIAAR---LGNIS 297
Query: 71 IVDLLLDNGADVNFKSATGFTALHMA 96
IVD LLD GAD + +G +
Sbjct: 298 IVDALLDYGADPFIANKSGLRPVDFG 323
Score = 31.9 bits (72), Expect = 0.25
Identities = 12/109 (11%), Positives = 32/109 (29%), Gaps = 13/109 (11%)
Query: 20 DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNG 79
+ +++++ L + NE+ K+ L + + + L + +
Sbjct: 40 SSPLKIMKALPSPVVNDNEQ-KMKLEAFLQRLLFPEIQEMPTSLNNDSS----------- 87
Query: 80 ADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPL 128
+ N + + + N+ + G TPL
Sbjct: 88 -NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 135
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 69.0 bits (169), Expect = 1e-13
Identities = 28/151 (18%), Positives = 43/151 (28%), Gaps = 41/151 (27%)
Query: 12 TPLCAAVWDNNIR----LVEYLLRTGHDVNEKMKL---DGRTALFVAVHFNHRHIAALLI 64
L V + L+ +LL + ++ G+T L A L +
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCL---------PKALLNL 57
Query: 65 HHGAKEIVDLLLDNGAD-----------VNFKSATGFTALHMACRFHDDDSIVRKLLRHG 113
G + + +LLD G TALH+A V L+ G
Sbjct: 58 SAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE-RRCKHYVELLVEKG 116
Query: 114 AYYNVVD-------------GKTGKTPLLHA 131
A + G+ PL A
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147
Score = 47.5 bits (113), Expect = 2e-06
Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 24/108 (22%)
Query: 40 MKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFK----SATGFTALHM 95
MK+ R LF V G + ++ LL + + + +TG T L
Sbjct: 1 MKVFNRPILFDIVSRGSPD--------GLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPK 52
Query: 96 A--CRFHDDDSIVRKLLRHGAYYNVV----------DGKTGKTPLLHA 131
A + + LL + G+T L A
Sbjct: 53 ALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIA 100
Score = 43.2 bits (102), Expect = 5e-05
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 15/74 (20%)
Query: 12 TPL--CAAVWDNN-------IRLVEYLLRTGHDVNEKMKL------DGRTALFVAVHFNH 56
T L A+ DN ++ + LL + L DG + L +A
Sbjct: 178 TVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237
Query: 57 RHIAALLIHHGAKE 70
I +I +
Sbjct: 238 IGIFQHIIRREIAD 251
Score = 29.4 bits (66), Expect = 1.5
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMK 41
L+PL A I + ++++R
Sbjct: 226 LSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 64.2 bits (156), Expect = 1e-11
Identities = 17/131 (12%), Positives = 35/131 (26%), Gaps = 21/131 (16%)
Query: 7 INVELTPLCAAVW--DNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLI 64
I E+ AA+ + + + LL + V + A +A H
Sbjct: 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA-ENYQAFRLAAENGH-------- 140
Query: 65 HHGAKEIVDLLLDNGADVNF--KSATGFTALHMACRF-HDDDSIVRKLLRHGAYYNVVDG 121
+++ L + A + A +A H ++ +L
Sbjct: 141 ----LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLH--VLNRLCELAPTEATAMI 194
Query: 122 KT-GKTPLLHA 131
+ A
Sbjct: 195 QAENYYAFRWA 205
Score = 41.1 bits (96), Expect = 3e-04
Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 7/86 (8%)
Query: 36 VNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHM 95
V + L G L + N + + + + A L +
Sbjct: 270 VTKSECLQGFYMLRNLIRRNDEVLLDDIRFL----LSIPGIKALAPTATIPGDANELLRL 325
Query: 96 ACRF-HDDDSIVRKLLRHGAYYNVVD 120
A R + LL + +
Sbjct: 326 ALRLGNQG--ACALLLSIPSVLALTK 349
Score = 39.9 bits (93), Expect = 8e-04
Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 25/115 (21%)
Query: 11 LTPLCAAVWDNNIRLVEYL--------LRTGHDVNEKMKLDGRTALFVAVHFNHRHIAAL 62
L + N+ L++ + ++ D L +A
Sbjct: 279 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPG-DANELL---------RLAL- 327
Query: 63 LIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYN 117
G + LLL + + A + ++ D + L H +++
Sbjct: 328 --RLGNQGACALLLSIPSVLALTKANNY---YINETGGRLD-LRAVALEHHHHHH 376
Score = 32.6 bits (74), Expect = 0.16
Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 4/65 (6%)
Query: 4 GATINVELTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALL 63
L A+ N LL + L ++ + A+
Sbjct: 313 ATIPGDANELLRLALRLGNQGACALLLSIPSVLA----LTKANNYYINETGGRLDLRAVA 368
Query: 64 IHHGA 68
+ H
Sbjct: 369 LEHHH 373
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 63.6 bits (154), Expect = 2e-11
Identities = 29/119 (24%), Positives = 39/119 (32%), Gaps = 15/119 (12%)
Query: 14 LCAAVWDNNIRLVEYLLRTGHDVNEKM-KLDGRTALFVAVHFNHRHIAALLIHHGAKEIV 72
A+ ++ + L G DVN D T L A N L+
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ------- 256
Query: 73 DLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHA 131
NGA+VN + G LH A + L+ GA D G+ PL A
Sbjct: 257 -----NGANVNQADSAGRGPLHHATI-LGHTGLACLFLKRGADLGARD-SEGRDPLTIA 308
Score = 52.1 bits (124), Expect = 9e-08
Identities = 32/116 (27%), Positives = 46/116 (39%), Gaps = 16/116 (13%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEI 71
TPL A N++ E+LL+ G +VN+ GR L A H +
Sbjct: 237 TPLIQATAANSLLACEFLLQNGANVNQADS-AGRGPLHHATILGHT------------GL 283
Query: 72 VDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTP 127
L L GAD+ + + G L +A + D IV LLR A + G+
Sbjct: 284 ACLFLKRGADLGARDSEGRDPLTIAMETANAD-IVT-LLRL-AKMREAEAAQGQAG 336
Score = 36.7 bits (84), Expect = 0.007
Identities = 22/99 (22%), Positives = 35/99 (35%), Gaps = 7/99 (7%)
Query: 3 SGATINVE----LTPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRH 58
+GA +N PL A + L L+ G D+ + +GR L +A+ +
Sbjct: 257 NGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS-EGRDPLTIAMETANAD 315
Query: 59 IAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMAC 97
I LL +E G + F+ MA
Sbjct: 316 IVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS--LMAS 352
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 55/337 (16%), Positives = 105/337 (31%), Gaps = 101/337 (29%)
Query: 69 KEIVDLLLDNGADVNF-----------KSATGFTALHMACR--FHDDDSIVRKLLRHGAY 115
+E+V ++ +N+ + + T +++ R ++D+ + K
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK------- 128
Query: 116 YNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRLDEM----KS-L 170
YNV + L A R VL+ + K+ +
Sbjct: 129 YNVSRLQP-YLKLRQALLELRPAKNVLID---------------------GVLGSGKTWV 166
Query: 171 ILEVTKEFGPGDYNNFSL--LKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKL- 227
L+V + +F + L + ++ ET+L++ +L+ + D R D +IKL
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 228 ------ELTKAFGPGDYNNFSLL------------------K--VTKNDAGETILDIAKK 261
EL + Y N LL K +T T A
Sbjct: 227 IHSIQAELRRLLKSKPYEN-CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 262 RGFPLLEELEKKLADANNDTTILDRLD--------EMK-------SLILEGTKEFGPGDY 306
L+ L + +L LD E+ S+I E ++ +
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG-LATW 344
Query: 307 NNFSLLKVAKNDAGETI------LGPTMIQLSWIDLT 337
+N+ V + I L P + + L+
Sbjct: 345 DNW--KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Score = 38.3 bits (88), Expect = 0.004
Identities = 52/369 (14%), Positives = 111/369 (30%), Gaps = 123/369 (33%)
Query: 11 LTPLCAAVWDNNIRLVEYLLRTGHDVNE-KMKLDGRTALFVAVHFNHRHIAALLI--HHG 67
L L + N ++ ++ + +L L + + LL+ +
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR---LL----KSKPYENCLLVLLNVQ 254
Query: 68 AKEIVD--------LLLDNGADV-NFKSATGFTAL---HMACRFHDDDSIVRKLLRHGAY 115
+ + LL V +F SA T + H + D+ + LL
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSLLL---- 308
Query: 116 YNVVDGKTGK--------TPLLHAGKGAR-----------------EVNTVLLYFIN--- 147
+D + P + ++ T++ +N
Sbjct: 309 -KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 148 -----EIFKLMA--NNDTTI----LDRL--DEMKSLILEVTKEFGPGDYNNFSLLKVAKN 194
++F ++ I L + D +KS ++ V + + +SL++
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL-----HKYSLVEKQPK 422
Query: 195 DAGETILDIFFELIGKNDT------TILDR----------------LDE---------MK 223
++ +I I+ EL K + +I+D LD+ +K
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 224 SIKL-ELTKAFGPGDYNNFSLL--KVTKNDAG--------ETILDIAKKRGF-----PLL 267
+I+ E F + +F L K+ + T+ + + + P
Sbjct: 483 NIEHPERMTLF-RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 268 EELEKKLAD 276
E L + D
Sbjct: 542 ERLVNAILD 550
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 4e-05
Identities = 49/278 (17%), Positives = 88/278 (31%), Gaps = 104/278 (37%)
Query: 2 FSGATINVE--LTPLCAAV---WD----NNIRLVEYLLRTG---H--------------- 34
GAT + + +T + A W+ + + + L G +
Sbjct: 267 LKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 35 --DVNEK----M-KLDG--RTALFVAV-HFN-----HRHIAALLIHHGAKEIV------- 72
+ NE M + + + V N + + L++ GAK +V
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPPQS 385
Query: 73 ----DLLL-----DNGAD---VNF-----KSATGFTALHMACRFHDD------DSIVRKL 109
+L L +G D + F K + F L +A FH D I + L
Sbjct: 386 LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF--LPVASPFHSHLLVPASDLINKDL 443
Query: 110 LRHGAYYNVVDGKTGKTPLLHAGKGA--REVNTVLLYFI-NEIF-------KLMANNDTT 159
+++ + + K + P+ G+ R ++ + I + I T
Sbjct: 444 VKNNVSF---NAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Query: 160 ILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAG 197
ILD FGPG + +L +N G
Sbjct: 501 ILD---------------FGPGGASGLGVL-THRNKDG 522
Score = 40.8 bits (95), Expect = 7e-04
Identities = 49/291 (16%), Positives = 88/291 (30%), Gaps = 97/291 (33%)
Query: 68 AKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGK-- 125
A+++ + AD +FK GF+ L IV + + G+ GK
Sbjct: 1642 AQDVWNR-----ADNHFKDTYGFSILD----------IVINNPVNLTIHF--GGEKGKRI 1684
Query: 126 -----TPLLHAGKGAREVNTVLLYFINE-IFKLMANNDTTILDR---------LDEMKSL 170
+ + + INE ++ +L L E
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEK--A 1742
Query: 171 ILEVTKEFGPGDYNNF----SL-----LKVAKNDAGETILDI--FFELI---GKNDTTIL 216
E K G + SL L + A ++ I E++ G +
Sbjct: 1743 AFEDLKSKGLIPADATFAGHSLGEYAAL-ASL--AD--VMSIESLVEVVFYRGMTMQVAV 1797
Query: 217 DRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILD-IAKKRGFPLLEELEKKLA 275
R DE+ + A PG + +A + +++ + K+ G+ + E+
Sbjct: 1798 PR-DELGRSNYGMI-AINPG-----RVAASFSQEALQYVVERVGKRTGWLV--EI----- 1843
Query: 276 DAN-N---------------D--TTILDRLDEMK--------SLILEGTKE 300
N N D T +L+ + K SL LE +
Sbjct: 1844 -VNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEG 1893
Score = 39.6 bits (92), Expect = 0.001
Identities = 17/125 (13%), Positives = 33/125 (26%), Gaps = 41/125 (32%)
Query: 183 YNNFSLLKVAKNDAGETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFS 242
Y K A++ + +R D +G FS
Sbjct: 1636 YKTS---KAAQD--------------------VWNRADNH------FKDTYG------FS 1660
Query: 243 LLKVTKNDAGETILDIAKKRGFPLLEELEKKLADANND-----TTILDRLDE-MKSLILE 296
+L + N+ + ++G + E + + D I ++E S
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 297 GTKEF 301
K
Sbjct: 1721 SEKGL 1725
Score = 37.0 bits (85), Expect = 0.010
Identities = 20/128 (15%), Positives = 40/128 (31%), Gaps = 45/128 (35%)
Query: 27 EYLLRTGHDVNEKMKLDG----RTALFVAVHFNH-----RHIAALLIHHGAKEIVDLLLD 77
L+ +N+ + + + + V+ R ++ + IVD ++
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISE----RIVDCIIR 485
Query: 78 NGADVNFKSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVD----GKTGKTPLLHA-- 131
V +++ T F A H ++D G +G L H
Sbjct: 486 --LPVKWETTTQFKATH-----------------------ILDFGPGGASGLGVLTHRNK 520
Query: 132 -GKGAREV 138
G G R +
Sbjct: 521 DGTGVRVI 528
Score = 35.8 bits (82), Expect = 0.021
Identities = 23/130 (17%), Positives = 44/130 (33%), Gaps = 36/130 (27%)
Query: 226 KLELTKAFGPGD--YNNFSLLKVTKNDAGETILDIAKKRGFPLLEELEKKLA-------D 276
KL+ + F P +++ LL A + I K K + D
Sbjct: 413 KLKFSNRFLPVASPFHS-HLLV----PASDLINKDLVKNNVSFNA---KDIQIPVYDTFD 464
Query: 277 ANN----DTTILDRLDEM---------KSLILEGTK--EFGPGDYNNFSLLKVAKNDAG- 320
++ +I +R+ + + + T +FGPG + +L +N G
Sbjct: 465 GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVL-THRNKDGT 523
Query: 321 --ETILGPTM 328
I+ T+
Sbjct: 524 GVRVIVAGTL 533
>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint
center for structural genomics, JCSG; HET: MSE; 1.40A
{Shewanella putrefaciens cn-32} PDB: 3gxg_A*
Length = 157
Score = 29.9 bits (67), Expect = 0.73
Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 11/139 (7%)
Query: 48 LFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATGFTALHMACRFHDDDSIVR 107
L + N + + L G +++L+ D+ D + T M + D
Sbjct: 22 LLSSGLPNEQQFSLLK-QAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNP 80
Query: 108 KLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVLLYFINEIFKLMANNDTTILDRL--- 164
K+ A++ +D GK L+H R ++ ++ + N +
Sbjct: 81 KVEDVEAFFAAMDQHKGKDVLVHCLANYR---ASAFAYLYQLKQGQNPNMAQTMTPWNDE 137
Query: 165 ----DEMKSLILEVTKEFG 179
+ ++L+ EV+ ++G
Sbjct: 138 LAIYPKWQALLTEVSAKYG 156
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 30.6 bits (69), Expect = 0.92
Identities = 42/272 (15%), Positives = 76/272 (27%), Gaps = 19/272 (6%)
Query: 23 IRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIHHGAKEIVDLLLDNGADV 82
RL+ + + N +++L A + + ++ LL K VD L+N A
Sbjct: 1181 PRLLAAACQLQLNGNLQLELGQVLAQERPLLCDDPLLSGLLDAPALKACVDTALENMASP 1240
Query: 83 NFK-----SATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGARE 137
K + G + + + ++ K LH +G +
Sbjct: 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWD 1300
Query: 138 VNTVLLYFINEIFKLMANNDTTILDRLDEMKSLILEVTKEFGPGDYNNFSLLKVAKNDAG 197
+ + L+ N L + KE G F LL AG
Sbjct: 1301 PANPAPGSLGKADLLVCNCALATLGDPAVAVGNMAATLKEGG------FLLLH--TLLAG 1352
Query: 198 ETILDIFFELIGKNDTTIL-----DRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAG 252
+ ++ L L L + L +
Sbjct: 1353 HPLGEMVGFLTSPEQGGRHLLSQDQWESLFAGASLHLVALKRSFYGSVLFLCRQQTPQDS 1412
Query: 253 ETILDIAKKRGFPLLEELEKKLADANNDTTIL 284
L + F ++ L+ LADA++ L
Sbjct: 1413 PVFLSVEDTS-FRWVDSLKDILADASSRPVWL 1443
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur,
electron transport; 1.90A {Haloarcula marismortui} SCOP:
d.15.4.1 PDB: 1e0z_A* 1e10_A
Length = 128
Score = 28.9 bits (65), Expect = 0.99
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 203 IFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGDYNNFSLLKVTKNDAGETILDIAKKR 262
+ +E++ N + D ++ ++L DY + + + GE IL+ A+ +
Sbjct: 6 LNYEVVDDNGWDMYDDDVFGEASDMDLD----DEDYGSLEV------NEGEYILEAAEAQ 55
Query: 263 GFPL 266
G+
Sbjct: 56 GYDW 59
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1
c.62.1.3 PDB: 1jeq_A* 3rzx_B
Length = 609
Score = 29.1 bits (64), Expect = 2.5
Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 3/113 (2%)
Query: 85 KSATGFTALHMACRFHDDDSIVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVNTVL-- 142
S+T F+AL + C + ++ R R V + L L
Sbjct: 377 GSSTLFSALLIKCLEKEVAALCRYTPRRNIPPYFVALVPQEEELDDQKIQVTPPGFQLVF 436
Query: 143 LYFINEIFKLMANNDTTILDRLDE-MKSLILEVTKEFGPGDYNNFSLLKVAKN 194
L F ++ K+ MK+++ ++ + + N L + +N
Sbjct: 437 LPFADDKRKMPFTEKIMATPEQVGKMKAIVEKLRFTYRSDSFENPVLQQHFRN 489
>1hpl_A Lipase; hydrolase(carboxylic esterase); 2.30A {Equus caballus}
SCOP: b.12.1.2 c.69.1.19
Length = 449
Score = 28.8 bits (64), Expect = 3.0
Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 9/81 (11%)
Query: 12 TPLCAAVWDNNIRLVEYLLRTGHDVNEKMKLDGRTALFVAVHFNHRHIAALLIH------ 65
PL W +LL T + + ++ + + +FN +IH
Sbjct: 23 RPLKILPWSPEKVNTRFLLYTNENPDNFQEIVADPSTIQSSNFNTGRKTRFIIHGFIDKG 82
Query: 66 --HGAKEIVDLLLDNGADVNF 84
+ + VN
Sbjct: 83 EESWLSTMCQNMFKVE-SVNC 102
>3uoa_B Mucosa-associated lymphoid tissue lymphoma transl protein 1;
paracaspase, lymphoma, NF-KB signalling, caspase fold,
immun fold, hydrolase-hydrolase inhibitor complex; 1.75A
{Homo sapiens} PDB: 3uo8_B 3v55_A 3v4l_A* 3v4o_A*
Length = 390
Score = 28.3 bits (62), Expect = 4.1
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 181 GDYNNFSLLKVAKNDA---GETILDIFFELIGKNDTTILDRLDEMKSIKLELTKAFGPGD 237
+Y LK D + + F+++ D T EM++ E G
Sbjct: 14 MNYREHPKLKAPLVDVYELTNLLRQLDFKVVSLLDLT----EYEMRNAVDEFLLLLDKGV 69
Query: 238 Y 238
Y
Sbjct: 70 Y 70
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar
binding, sugar binding protein, beta-galactoside binding
lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A
{Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A*
1ulf_A* 1ulg_A* 1uld_A*
Length = 150
Score = 27.5 bits (61), Expect = 4.2
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 82 VNFKSATGFTALHMACRFHDDDSIVR 107
NF SA LH++ R ++ IV
Sbjct: 39 FNFLSAGENILLHISIRP-GENVIVF 63
>3naj_A Galectin-8; sugar binding protein; HET: GAL BGC; 2.80A {Homo
sapiens} PDB: 3ojb_A
Length = 291
Score = 27.8 bits (61), Expect = 5.1
Identities = 8/38 (21%), Positives = 13/38 (34%), Gaps = 5/38 (13%)
Query: 81 DVNFKSATGF-----TALHMACRFHDDDSIVRKLLRHG 113
V+ ++ + A H RF IV L +
Sbjct: 47 QVDLQNGSSMKPRADVAFHFNPRFKRAGCIVCNTLINE 84
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 27.3 bits (61), Expect = 8.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 105 IVRKLLRHGAYYNVVDGKTGKTPLLHAGKGAREVN 139
+R +L A+ N+ + KT T GK RE
Sbjct: 840 AIRYILSGKAWLNLFENKTAFTMKKDYGKEEREAQ 874
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 26.6 bits (59), Expect = 9.9
Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 13/92 (14%)
Query: 50 VAVHFNHRHIAALLIHHGAKEIVDLLLDNGADVNFKSATG-FTALHMACRFHDDDSIVRK 108
F I + A ++V L G +AT F +A F I
Sbjct: 80 WHEEFMRDVIRPS-LTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLI--- 135
Query: 109 LLRHGAYYNVVDGK-TGK---TPLLHAGKGAR 136
DG+ TG+ TP GK R
Sbjct: 136 ----ATDPEYRDGRYTGRIEGTPSFREGKVVR 163
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.398
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,305,481
Number of extensions: 340527
Number of successful extensions: 2258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1348
Number of HSP's successfully gapped: 287
Length of query: 338
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 244
Effective length of database: 4,077,219
Effective search space: 994841436
Effective search space used: 994841436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (25.8 bits)