BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5575
(668 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OUI|A Chain A, Phd2-R717 With 40787422
Length = 213
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 70 RANRMVNNGRMGDFVINGRTKDL 92
NG++G + INGRTK +
Sbjct: 103 HC-----NGKLGSYKINGRTKAM 120
>pdb|2HBT|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
pdb|2HBU|A Chain A, Crystal Structure Of Hif Prolyl Hydroxylase Egln-1 In
Complex With A Biologically Active Inhibitor
Length = 247
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 70 RANRMVNNGRMGDFVINGRTKDL 92
NG++G + INGRTK +
Sbjct: 103 HC-----NGKLGSYKINGRTKAM 120
>pdb|2G1M|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
pdb|3HQU|A Chain A, Phd2:fe:un9:partial Hif1-Alpha Substrate Complex
Length = 246
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 45 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 101
Query: 70 RANRMVNNGRMGDFVINGRTKDL 92
NG++G + INGRTK +
Sbjct: 102 HC-----NGKLGSYKINGRTKAM 119
>pdb|3HQR|A Chain A, Phd2:mn:nog:hif1-Alpha Substrate Complex
Length = 246
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 45 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 101
Query: 70 RANRMVNNGRMGDFVINGRTKDL 92
NG++G + INGRTK +
Sbjct: 102 HC-----NGKLGSYKINGRTKAM 119
>pdb|2G19|A Chain A, Cellular Oxygen Sensing: Crystal Structure Of Hypoxia-
Inducible Factor Prolyl Hydroxylase (Phd2)
Length = 244
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 70 RANRMVNNGRMGDFVINGRTKDL 92
NG++G + INGRTK +
Sbjct: 103 HC-----NGKLGSYKINGRTKAM 120
>pdb|2Y33|A Chain A, S-Nitrosylated Phd2 (Gsno Soaked) In Complex With Zn(Ii)
And Un9
pdb|2Y34|A Chain A, S-Nitrosylated Phd2 (No Exposed) In Complex With Fe(Ii)
And Un9
Length = 252
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 51 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 107
Query: 70 RANRMVNNGRMGDFVINGRTKDL 92
NG++G + INGRTK +
Sbjct: 108 HC-----NGKLGSYKINGRTKAM 125
>pdb|3OUH|A Chain A, Phd2-R127 With Jnj41536014
pdb|3OUJ|A Chain A, Phd2 With 2-Oxoglutarate
Length = 237
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 54/83 (65%), Gaps = 8/83 (9%)
Query: 10 EVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69
EV ++ +G F DGQLVS KS + +D IRGD+ITWI+G+E C IG L+S +D +I
Sbjct: 46 EVRALHDTGKFTDGQLVSQKSDSSKD---IRGDKITWIEGKEPGCETIGLLMSSMDDLIR 102
Query: 70 RANRMVNNGRMGDFVINGRTKDL 92
NG++G + INGRTK +
Sbjct: 103 HC-----NGKLGSYKINGRTKAM 120
>pdb|2HH7|A Chain A, Crystal Structure Of Cu(I) Bound Csor From Mycobacterium
Tuberculosis
Length = 119
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 24 QLVSNKSTNKQDLKTIRG--DQITWIDGRETYCSNIGRLISEVDAIIMRANRMV 75
+L + K LKT+RG D I + + YC ++ + IS V + + RANR++
Sbjct: 4 ELTAKKRAALNRLKTVRGHLDGIVRMLESDAYCVDVMKQISAVQSSLERANRVM 57
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.336
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,134,565
Number of Sequences: 62578
Number of extensions: 537338
Number of successful extensions: 1243
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1092
Number of HSP's gapped (non-prelim): 111
length of query: 668
length of database: 14,973,337
effective HSP length: 105
effective length of query: 563
effective length of database: 8,402,647
effective search space: 4730690261
effective search space used: 4730690261
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)