Query psy5575
Match_columns 668
No_of_seqs 138 out of 188
Neff 2.9
Searched_HMMs 46136
Date Fri Aug 16 20:59:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5575.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5575hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3710|consensus 99.9 4.3E-25 9.3E-30 220.0 3.7 90 1-99 64-153 (280)
2 smart00702 P4Hc Prolyl 4-hydro 47.5 25 0.00055 33.0 4.0 62 3-71 14-75 (178)
3 PRK14888 KEOPS complex Pcc1-li 16.4 1.3E+02 0.0029 25.2 2.6 17 55-71 29-45 (59)
4 PF06176 WaaY: Lipopolysacchar 13.2 2.8E+02 0.0061 29.2 4.5 57 3-70 140-196 (229)
5 PF13856 Gifsy-2: ATP-binding 13.1 2.3E+02 0.005 25.0 3.4 35 58-101 6-40 (95)
6 KOG0431|consensus 12.1 1.2E+02 0.0027 34.2 1.7 23 45-70 365-387 (453)
7 PRK04323 hypothetical protein; 8.9 2.7E+02 0.0059 25.7 2.4 41 64-107 30-70 (91)
8 PF04025 DUF370: Domain of unk 8.5 3.1E+02 0.0067 24.4 2.5 40 64-106 26-65 (73)
9 COG3700 AphA Acid phosphatase 7.3 2.5E+02 0.0055 29.4 1.6 14 40-53 129-142 (237)
10 PF11294 DUF3095: Protein of u 7.2 4.8E+02 0.01 29.3 3.8 61 2-62 311-372 (373)
No 1
>KOG3710|consensus
Probab=99.90 E-value=4.3e-25 Score=220.01 Aligned_cols=90 Identities=40% Similarity=0.722 Sum_probs=83.7
Q ss_pred ChhhhHHHHHHHhhhcCCCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCcc
Q psy5575 1 MDKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRM 80 (668)
Q Consensus 1 ~erG~~VL~EVk~LY~sG~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkL 80 (668)
++.|.+|++||++||+.|+|+|||||++++.. .|+||||+|+||+|+||||++|++||+.||.+|.|| ||++
T Consensus 64 ~~~g~~v~~ev~~l~~~G~f~dgql~~~~~~~---~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~-----~~r~ 135 (280)
T KOG3710|consen 64 SETGKFILKEVEALYETGAFRDGQLVSPDAFH---SKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC-----NGRL 135 (280)
T ss_pred HHHHHHHHHHHHHHHhccCccCceeccCcCCc---chhhccCCceEecCCCCCccceeeecccchhhhhhh-----cccc
Confidence 47899999999999999999999999987764 489999999999999999999999999999999999 6779
Q ss_pred cceEEccccceeeeccccc
Q psy5575 81 GDFVINGRTKDLRISTVED 99 (668)
Q Consensus 81 G~y~InGRTKAMvise~~~ 99 (668)
|.|.|+ ||||||+|+--|
T Consensus 136 ~~~~~g-RtkAMVAcYPGN 153 (280)
T KOG3710|consen 136 GSYIIG-RTKAMVACYPGN 153 (280)
T ss_pred cccccc-ceeEEEEEecCC
Confidence 999885 999999999764
No 2
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=47.51 E-value=25 Score=32.99 Aligned_cols=62 Identities=13% Similarity=0.133 Sum_probs=39.6
Q ss_pred hhhHHHHHHHhhhcCCCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHHHHh
Q psy5575 3 KSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRA 71 (668)
Q Consensus 3 rG~~VL~EVk~LY~sG~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~c 71 (668)
...+|++.++.+.. ++.+.....+. ....++|.++.+|++..+ +++-+..|...|-+++...
T Consensus 14 ec~~li~~~~~~~~-----~~~~~~~~~~~-~~~~~~R~~~~~~l~~~~-~~~~~~~l~~~i~~~~~~~ 75 (178)
T smart00702 14 ECQKLLEEAEPLGW-----RGEVTRGDTNP-NHDSKYRQSNGTWLELLK-GDLVIERIRQRLADFLGLL 75 (178)
T ss_pred HHHHHHHHhhhhcc-----cceeecCCCCc-cccCCCEeecceecCCCC-CCHHHHHHHHHHHHHHCCC
Confidence 44556666665543 44444433221 013579999999999876 5677778888887777553
No 3
>PRK14888 KEOPS complex Pcc1-like subunit; Provisional
Probab=16.45 E-value=1.3e+02 Score=25.24 Aligned_cols=17 Identities=35% Similarity=0.634 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHh
Q psy5575 55 SNIGRLISEVDAIIMRA 71 (668)
Q Consensus 55 e~I~~LIS~mD~LI~~c 71 (668)
+.||-|++.+|+++++.
T Consensus 29 ~~igsl~~TvDD~l~nl 45 (59)
T PRK14888 29 EKIGTLLNTVDDYLMNL 45 (59)
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 59999999999999976
No 4
>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY). The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process
Probab=13.19 E-value=2.8e+02 Score=29.16 Aligned_cols=57 Identities=14% Similarity=0.196 Sum_probs=37.7
Q ss_pred hhhHHHHHHHhhhcCCCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHHHH
Q psy5575 3 KSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMR 70 (668)
Q Consensus 3 rG~~VL~EVk~LY~sG~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~ 70 (668)
.+..|.+.+++||..|.|.. |+.+..==+.+|+|.|+|-.-.+|.+.+..- |.+.+.
T Consensus 140 ~~~ki~~~ikqlH~~G~~HG--------D~hpgNFlv~~~~i~iID~~~k~~~~~rka~---D~i~l~ 196 (229)
T PF06176_consen 140 LAEKIVEAIKQLHKHGFYHG--------DPHPGNFLVSNNGIRIIDTQGKRMSNYRKAN---DMITLE 196 (229)
T ss_pred HHHHHHHHHHHHHHcCCccC--------CCCcCcEEEECCcEEEEECccccccchhhhh---hHHHHH
Confidence 34678899999999998642 2211112267889999999887776555432 666554
No 5
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=13.05 E-value=2.3e+02 Score=24.95 Aligned_cols=35 Identities=29% Similarity=0.418 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhhccccCCcccceEEccccceeeeccccccc
Q psy5575 58 GRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLR 101 (668)
Q Consensus 58 ~~LIS~mD~LI~~cnrm~~NGkLG~y~InGRTKAMvise~~~~~ 101 (668)
-.+++.||++++ +.| ...+.||| |.|.+.......
T Consensus 6 d~~~~d~D~~~~--~~f-----g~~~~InG--~~~~~v~d~~~~ 40 (95)
T PF13856_consen 6 DQLAADIDAVIL--DEF-----GEEHTING--KPYRAVFDEPEL 40 (95)
T ss_dssp HHHHHHHHHHHH--HHH------EEEEETT--EEEEEEEGGGT-
T ss_pred HHHHHHHHHHHH--HHh-----CCeEEECC--EEEEEEECCchh
Confidence 368899999999 445 45677999 667766666443
No 6
>KOG0431|consensus
Probab=12.11 E-value=1.2e+02 Score=34.20 Aligned_cols=23 Identities=30% Similarity=0.686 Sum_probs=20.6
Q ss_pred EEecCCCCCchhHHHHHHHHHHHHHH
Q psy5575 45 TWIDGRETYCSNIGRLISEVDAIIMR 70 (668)
Q Consensus 45 tWvdG~EpgCe~I~~LIS~mD~LI~~ 70 (668)
-|.+|+| -||+.|++.|+.|.--
T Consensus 365 ~W~~GKE---~NIRALLSTLh~VLW~ 387 (453)
T KOG0431|consen 365 RWSEGKE---GNIRALLSTLHYVLWP 387 (453)
T ss_pred Hhccccc---ccHHHHHHHHhHhhcC
Confidence 5999999 7999999999998754
No 7
>PRK04323 hypothetical protein; Provisional
Probab=8.85 E-value=2.7e+02 Score=25.69 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=31.6
Q ss_pred HHHHHHHhhccccCCcccceEEccccceeeeccccccccccccc
Q psy5575 64 VDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVED 107 (668)
Q Consensus 64 mD~LI~~cnrm~~NGkLG~y~InGRTKAMvise~~~~~is~~~~ 107 (668)
+-.++..+ ++.|+|-+..-+.+|||.++.++.++-+|-.+-
T Consensus 30 ~Kr~~~~a---k~~g~lidaT~GrktrsvIItds~hV~LSai~~ 70 (91)
T PRK04323 30 IKRIIQEA---RERGMLIDATYGRKTRAVIITDSGHVILSAIQP 70 (91)
T ss_pred HHHHHHHH---HHcCeEEeccCCCceeEEEEecCCeEEEeeCCH
Confidence 45556555 457888888888999999999999887766553
No 8
>PF04025 DUF370: Domain of unknown function (DUF370); InterPro: IPR007169 This is a bacterial family of unknown function.
Probab=8.50 E-value=3.1e+02 Score=24.40 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=30.2
Q ss_pred HHHHHHHhhccccCCcccceEEccccceeeecccccccccccc
Q psy5575 64 VDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLRISTVE 106 (668)
Q Consensus 64 mD~LI~~cnrm~~NGkLG~y~InGRTKAMvise~~~~~is~~~ 106 (668)
+..++..+ +++|+|-+-.-+.+|||..+.++.++-+|..+
T Consensus 26 ~Krl~~~a---k~~~~lIdaT~GrktrsviitdsghviLSa~~ 65 (73)
T PF04025_consen 26 IKRLIQEA---KEEGKLIDATYGRKTRSVIITDSGHVILSALQ 65 (73)
T ss_pred HHHHHHHH---HHcCcEEEeeCCCceeEEEEEcCCcEEEeeCC
Confidence 44466666 45688888888888999999999887666554
No 9
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=7.30 E-value=2.5e+02 Score=29.42 Aligned_cols=14 Identities=43% Similarity=0.760 Sum_probs=0.0
Q ss_pred cCceeEEecCCCCC
Q psy5575 40 RGDQITWIDGRETY 53 (668)
Q Consensus 40 RGDkItWvdG~Epg 53 (668)
|||+|++|.|+-+|
T Consensus 129 RGD~i~FvTGRt~g 142 (237)
T COG3700 129 RGDAIYFVTGRTPG 142 (237)
T ss_pred cCCeEEEEecCCCC
No 10
>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed. Currently no function is known.
Probab=7.24 E-value=4.8e+02 Score=29.35 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHhhhcCCCCCCCeeecCCCCCC-cCCCCccCceeEEecCCCCCchhHHHHHH
Q psy5575 2 DKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNK-QDLKTIRGDQITWIDGRETYCSNIGRLIS 62 (668)
Q Consensus 2 erG~~VL~EVk~LY~sG~FtDGQLVsqk~~s~-~~~k~IRGDkItWvdG~EpgCe~I~~LIS 62 (668)
+...++..-..+++..|+.+.|==++..+--+ -...-.|+|||-.|||.+.|...=+.-|+
T Consensus 311 ~~~~~l~~~L~~~~~~G~~~YGlH~sd~AlMTC~V~~~~~~~HvHFVDGa~GGYa~AA~~LK 372 (373)
T PF11294_consen 311 EQRDALEARLEQAEAAGKLRYGLHRSDAALMTCIVPSRSRDDHVHFVDGADGGYAMAAKMLK 372 (373)
T ss_pred HHHHHHHHHHHHHHHCCceEEeeecccceeeEEeccCCCCCCceEEecCCCccHHHHHHHhc
Done!