Query psy5575
Match_columns 668
No_of_seqs 138 out of 188
Neff 2.9
Searched_HMMs 29240
Date Fri Aug 16 21:00:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5575.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5575hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hbt_A EGL nine homolog 1; pro 98.9 3.8E-09 1.3E-13 103.5 8.8 89 2-98 38-126 (247)
2 2cqj_A BRMS2, U3 small nucleol 22.1 30 0.001 28.2 1.2 37 9-51 24-64 (71)
3 2k19_A Putative piscicolin 126 10.6 82 0.0028 28.1 1.0 25 43-71 3-28 (98)
4 2zrr_A Mundticin KS immunity p 10.5 94 0.0032 28.6 1.4 23 43-65 23-46 (118)
5 2jig_A Prolyl-4 hydroxylase; h 7.9 3.9E+02 0.013 24.9 4.6 56 37-94 61-116 (224)
6 1u9y_A RPPK;, ribose-phosphate 6.8 3.4E+02 0.012 26.9 3.8 47 17-69 29-75 (284)
7 3itq_A Prolyl 4-hydroxylase, a 6.0 3.1E+02 0.011 26.4 2.8 54 37-94 76-129 (216)
8 2eaq_A LIM domain only protein 5.5 4.5E+02 0.015 20.5 3.1 24 39-62 47-70 (90)
9 1vae_A Rhophilin 2, rhophilin, 5.4 3.9E+02 0.014 22.6 2.9 23 39-61 55-77 (111)
10 2pp6_A Gifsy-2 prophage ATP-bi 5.2 4E+02 0.014 24.0 2.9 33 57-98 8-40 (102)
No 1
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=98.87 E-value=3.8e-09 Score=103.55 Aligned_cols=89 Identities=44% Similarity=0.743 Sum_probs=78.5
Q ss_pred hhhhHHHHHHHhhhcCCCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCccc
Q psy5575 2 DKSMAVLHEVLGMYHSGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMG 81 (668)
Q Consensus 2 erG~~VL~EVk~LY~sG~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkLG 81 (668)
|....|++++..|+..|.|++|+++.+... ..++||+|+|.|+++.++.|+.++.++..||+++..| |+.+|
T Consensus 38 ee~~~L~~~~~~~~~~g~~~~a~i~~~~~~---~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~l-----n~~lG 109 (247)
T 2hbt_A 38 ETGQQIGDEVRALHDTGKFTDGQLVSQKSD---SSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRHC-----NGKLG 109 (247)
T ss_dssp HHHHHHHHHHHHHHHTTCSCSCCEEECCSS---STTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHHT-----TTTST
T ss_pred HHHHHHHHHHHhhhhcCCcccccccccccc---ccccccccceeeecccccchhHHHHHHHHHHHHHHHH-----hhhcC
Confidence 567889999999999999999999873222 2478999999999999999999999999999999998 56799
Q ss_pred ceEEccccceeeecccc
Q psy5575 82 DFVINGRTKDLRISTVE 98 (668)
Q Consensus 82 ~y~InGRTKAMvise~~ 98 (668)
.|.|+|++++|++++..
T Consensus 110 l~~i~~~~e~~~~~Y~~ 126 (247)
T 2hbt_A 110 SYKINGRTKAMVACYPG 126 (247)
T ss_dssp TCCEEEECCEEEEEECS
T ss_pred cccccccceEEEEEecC
Confidence 99999999999999863
No 2
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.10 E-value=30 Score=28.18 Aligned_cols=37 Identities=16% Similarity=0.378 Sum_probs=26.2
Q ss_pred HHHHhhhcCCC-CCCCeeecCCCCCCcCCCCcc---CceeEEecCCC
Q psy5575 9 HEVLGMYHSGV-FKDGQLVSNKSTNKQDLKTIR---GDQITWIDGRE 51 (668)
Q Consensus 9 ~EVk~LY~sG~-FtDGQLVsqk~~s~~~~k~IR---GDkItWvdG~E 51 (668)
.+-++|...|. +.+|+.|.-.+ ..|. +|.|+|++|..
T Consensus 24 ~~A~~lI~~G~V~Vng~~v~kps------~~V~~~~~d~I~~~~~~~ 64 (71)
T 2cqj_A 24 QAAVAFVEQGHVRVGPDVVTDPA------FLVTRSMEDFVTWVDSSK 64 (71)
T ss_dssp HHHHHHHHTTCEEETTBCCCCTT------CEEEHHHHTTEEESCCSS
T ss_pred HHHHHHHHCCcEEECCEEECCCC------CCCCCCCCcEEEEECCce
Confidence 45667778886 78888875332 2444 69999999974
No 3
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=10.57 E-value=82 Score=28.13 Aligned_cols=25 Identities=12% Similarity=0.373 Sum_probs=15.2
Q ss_pred eeEEecC-CCCCchhHHHHHHHHHHHHHHh
Q psy5575 43 QITWIDG-RETYCSNIGRLISEVDAIIMRA 71 (668)
Q Consensus 43 kItWvdG-~EpgCe~I~~LIS~mD~LI~~c 71 (668)
.+.|+.| +|-+|++|..+ |.|+...
T Consensus 3 ~lKWfsGG~ER~~~Ai~iI----~~Ll~~l 28 (98)
T 2k19_A 3 KLKWFSGGKERSNQAENII----TDLLDDL 28 (98)
T ss_dssp SCCCCSCCSCHHHHHHHHH----HHHHHHH
T ss_pred CceeccCCHHHHHHHHHHH----HHHHHHh
Confidence 3679865 55667776654 4455444
No 4
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=10.48 E-value=94 Score=28.62 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=9.2
Q ss_pred eeEEecC-CCCCchhHHHHHHHHH
Q psy5575 43 QITWIDG-RETYCSNIGRLISEVD 65 (668)
Q Consensus 43 kItWvdG-~EpgCe~I~~LIS~mD 65 (668)
.+.|+.| +|-+|++|..+-..++
T Consensus 23 ~LKWFsGGkER~~~Ai~II~~Ll~ 46 (118)
T 2zrr_A 23 NLKWFSGGDDRRKKAEVIITELLD 46 (118)
T ss_dssp -------CCCHHHHHHHHHHHHHH
T ss_pred cceeccCCHHHHHHHHHHHHHHHH
Confidence 4689965 5566777765444443
No 5
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=7.87 E-value=3.9e+02 Score=24.92 Aligned_cols=56 Identities=16% Similarity=0.099 Sum_probs=29.9
Q ss_pred CCccCceeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCcccceEEccccceeee
Q psy5575 37 KTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRI 94 (668)
Q Consensus 37 k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkLG~y~InGRTKAMvi 94 (668)
..+|.++.+|++..+ .+.+..+..+|.++...--.....-++-.|..+|.-++...
T Consensus 61 ~~~R~s~~~~l~~~~--~~~~~~i~~ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D 116 (224)
T 2jig_A 61 SEIRTSTGTWFAKGE--DSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYD 116 (224)
T ss_dssp CSSBCSEEEECCTTC--SHHHHHHHHHHHHHHTCCGGGBCCCEEEEEETTCCEEEECC
T ss_pred cCCEEEeeeEecCCC--CHHHHHHHHHHHHHhCCCcccccceEEEecCCCccccCccc
Confidence 579999999999754 23445555555544321000111123446666666555444
No 6
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=6.80 E-value=3.4e+02 Score=26.91 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=33.3
Q ss_pred CCCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHHH
Q psy5575 17 SGVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAIIM 69 (668)
Q Consensus 17 sG~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~ 69 (668)
.++|.||.+--.=. ..+||+.++++...-+.=.++--|+-++|++=.
T Consensus 29 ~~~F~dGE~~v~i~------~~vrg~dv~iiqs~~~pn~~lmell~~~~a~~~ 75 (284)
T 1u9y_A 29 YKRFPDNEIYVRIV------DEINDDEAVIINTQKNQNDAIVETILLCDALRD 75 (284)
T ss_dssp EEECTTCCEEEEEC------SCCCSSEEEEECCCSSHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCEEEEeC------CCCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHH
Confidence 36799999754321 479999999997763213578888888888753
No 7
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=5.95 E-value=3.1e+02 Score=26.44 Aligned_cols=54 Identities=9% Similarity=0.110 Sum_probs=30.2
Q ss_pred CCccCceeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCcccceEEccccceeee
Q psy5575 37 KTIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRI 94 (668)
Q Consensus 37 k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkLG~y~InGRTKAMvi 94 (668)
.++|.++.+|++. -+-+..+..+|.++...--.....=++-.|..+|.-++...
T Consensus 76 ~~~RtS~~~wl~~----~~~v~~i~~Ri~~~~gl~~~~~E~lqv~~Y~~G~~y~~H~D 129 (216)
T 3itq_A 76 NDIRTSSGAFLDD----NELTAKIEKRISSIMNVPASHGEGLHILNYEVDQQYKAHYD 129 (216)
T ss_dssp CCGGGTTCEECCC----CHHHHHHHHHHHHHHTSCGGGBCCCEEEEECBTCCEEEECS
T ss_pred CCcEeeeeEEeCC----cHHHHHHHHHHHHhcCceeccccceeEEEeCCCCccccccC
Confidence 5899999999998 25556666666555422100111123455666665555443
No 8
>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}
Probab=5.46 E-value=4.5e+02 Score=20.50 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=16.5
Q ss_pred ccCceeEEecCCCCCchhHHHHHH
Q psy5575 39 IRGDQITWIDGRETYCSNIGRLIS 62 (668)
Q Consensus 39 IRGDkItWvdG~EpgCe~I~~LIS 62 (668)
-.||.|..|+|..-.+.+...+..
T Consensus 47 ~~GD~I~~ing~~v~~~~~~~~~~ 70 (90)
T 2eaq_A 47 QVDDEIIAINNTKFSYNDSKEWEE 70 (90)
T ss_dssp CTTCEEEEETTEECCTTCHHHHHH
T ss_pred CCCCEEEEECCEEccCCCHHHHHH
Confidence 469999999998764344444443
No 9
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1
Probab=5.35 E-value=3.9e+02 Score=22.55 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred ccCceeEEecCCCCCchhHHHHH
Q psy5575 39 IRGDQITWIDGRETYCSNIGRLI 61 (668)
Q Consensus 39 IRGDkItWvdG~EpgCe~I~~LI 61 (668)
--||.|.+|+|..-...+...++
T Consensus 55 ~~GD~Il~InG~~v~~~~~~d~~ 77 (111)
T 1vae_A 55 KEGDYIVSIQGVDCKWLTVSEVM 77 (111)
T ss_dssp CTTCEEEEETTEECSSCCHHHHH
T ss_pred CCCCEEEEECCEECCCCCHHHHH
Confidence 46999999999875432444333
No 10
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=5.22 E-value=4e+02 Score=23.99 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhccccCCcccceEEccccceeeecccc
Q psy5575 57 IGRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVE 98 (668)
Q Consensus 57 I~~LIS~mD~LI~~cnrm~~NGkLG~y~InGRTKAMvise~~ 98 (668)
--.++++||.+|..- | ...+.|||-. +.+.+++
T Consensus 8 Fd~~~armD~vi~~~--M-----g~~~~InG~~--y~av~~e 40 (102)
T 2pp6_A 8 FDGMKRRMDALIAER--F-----GMKVNINGTD--CIVVESD 40 (102)
T ss_dssp HHHHHHHHHHHHHHH--H-----CEEEEETTEE--EEEEEGG
T ss_pred HHHHHHHHHHHHHHH--h-----CCeEEECCEE--eeeehhh
Confidence 456899999999876 4 4567799854 3444443
Done!