Query psy5575
Match_columns 668
No_of_seqs 138 out of 188
Neff 2.9
Searched_HMMs 13730
Date Fri Aug 16 21:00:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5575.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5575hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1d5ra2 c.45.1.1 (A:14-187) Ph 8.4 23 0.0017 30.0 -1.3 48 43-97 74-126 (174)
2 d2pp6a1 b.106.1.2 (A:1-93) Gif 7.7 1.1E+02 0.0084 25.0 2.9 35 58-101 6-40 (93)
3 d1rxda_ c.45.1.1 (A:) Protein 7.5 88 0.0064 25.2 2.1 58 38-98 54-112 (152)
4 d1u9ya1 c.61.1.2 (A:1-155) Pho 7.4 1.6E+02 0.011 25.2 3.8 45 18-68 30-74 (155)
5 d2c4ka1 c.61.1.2 (A:7-166) PRP 6.5 2E+02 0.015 24.5 4.1 47 18-70 34-81 (160)
6 d1dkua1 c.61.1.2 (A:8-166) Pho 6.1 2.4E+02 0.017 24.1 4.3 47 18-70 31-78 (159)
7 d2csba1 a.60.2.4 (A:351-409) T 5.2 1E+02 0.0073 23.0 1.0 14 8-21 35-48 (59)
8 d1p9ka_ d.66.1.6 (A:) Hypothet 5.1 60 0.0043 25.1 -0.4 34 11-50 39-73 (79)
9 d1wpxa1 c.69.1.5 (A:1-421) Ser 5.0 1.5E+02 0.011 27.7 2.4 17 44-61 47-63 (421)
10 d1k3ra2 c.116.1.2 (A:1-92,A:16 5.0 1.7E+02 0.013 26.3 2.7 25 42-66 41-66 (191)
No 1
>d1d5ra2 c.45.1.1 (A:14-187) Phoshphoinositide phosphatase Pten (Pten tumor suppressor), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.40 E-value=23 Score=29.95 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=27.8
Q ss_pred eeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCcccceEE-----ccccceeeeccc
Q psy5575 43 QITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVI-----NGRTKDLRISTV 97 (668)
Q Consensus 43 kItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkLG~y~I-----nGRTKAMvise~ 97 (668)
...|-|+.-|..+.|-.++..||.++.. +.-|...| -|||-.|+++.-
T Consensus 74 ~~~~~d~~~Ps~~~i~~~~~~~~~~~~~-------~~~~~v~VHC~~G~gRSg~~~~ayL 126 (174)
T d1d5ra2 74 QYPFEDHNPPQLELIKPFCEDLDQWLSE-------DDNHVAAIHCKAGKGRTGVMICAYL 126 (174)
T ss_dssp EEEECTTSCCCHHHHHHHHHHHHHHHTT-------TSCSEEEEECSSSSHHHHHHHHHHH
T ss_pred EeCCCCCCCcCHHHHHHHHHHHHHHhcc-------CCCCEEEEEeCCCcchhHHHHHHHH
Confidence 4678888766556666666666654321 11111222 189988888764
No 2
>d2pp6a1 b.106.1.2 (A:1-93) Gifsy-2 prophage protein STM1035 {Salmonella typhimurium [TaxId: 90371]}
Probab=7.75 E-value=1.1e+02 Score=24.99 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhhccccCCcccceEEccccceeeeccccccc
Q psy5575 58 GRLISEVDAIIMRANRMVNNGRMGDFVINGRTKDLRISTVEDLR 101 (668)
Q Consensus 58 ~~LIS~mD~LI~~cnrm~~NGkLG~y~InGRTKAMvise~~~~~ 101 (668)
-.|+.+||.+|... | ...+.||| +.+.+.+++-+.
T Consensus 6 d~~~~rmD~vi~~~--m-----g~~~~ING--~~y~av~~e~~~ 40 (93)
T d2pp6a1 6 DGMKRRMDALIAER--F-----GMKVNING--TDCIVVESDFLA 40 (93)
T ss_dssp HHHHHHHHHHHHHH--H-----CEEEEETT--EEEEEEEGGGTC
T ss_pred HHHHHHHHHHHHHH--h-----CCEEEECC--EEeeeecccChh
Confidence 46899999999877 3 45677996 567777766554
No 3
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa {Human (Homo sapiens), pr-1 [TaxId: 9606]}
Probab=7.48 E-value=88 Score=25.19 Aligned_cols=58 Identities=16% Similarity=0.003 Sum_probs=35.1
Q ss_pred CccCceeEEecCCCCCchhHHHHHHHHHHHHHHhhccccCCcccceEE-ccccceeeecccc
Q psy5575 38 TIRGDQITWIDGRETYCSNIGRLISEVDAIIMRANRMVNNGRMGDFVI-NGRTKDLRISTVE 98 (668)
Q Consensus 38 ~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI~~cnrm~~NGkLG~y~I-nGRTKAMvise~~ 98 (668)
.|.-=++.|.|+.-|..+.+..++..++.++.... ++.-+-.|.= -|||=+|++++--
T Consensus 54 ~i~~~~~~~~d~~~p~~~~~~~~~~~~~~~~~~~~---~~~v~VHC~~G~gRsg~~~a~~l~ 112 (152)
T d1rxda_ 54 GIHVLDWPFDDGAPPSNQIVDDWLSLVKIKFREEP---GCCIAVHCVAGLGRAPVLVALALI 112 (152)
T ss_dssp TCEEEECCC--CCCCCHHHHHHHHHHHHHHHHHST---TCEEEEECSSSSTTHHHHHHHHHH
T ss_pred ceEEEEeeCCCCCCCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEcCCcccHHHHHHHHHH
Confidence 34444677888888888888888888887765421 1111222321 3999999988643
No 4
>d1u9ya1 c.61.1.2 (A:1-155) Phosphoribosylpyrophosphate synthetase {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=7.43 E-value=1.6e+02 Score=25.25 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCCchhHHHHHHHHHHHH
Q psy5575 18 GVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETYCSNIGRLISEVDAII 68 (668)
Q Consensus 18 G~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~EpgCe~I~~LIS~mD~LI 68 (668)
++|.||.+--.= ..++||+.+.-+...-+--.++-.|+-++|++-
T Consensus 30 ~~F~DGE~~v~i------~~~vrg~~vvvi~s~~~~~d~lmelll~~da~~ 74 (155)
T d1u9ya1 30 KRFPDNEIYVRI------VDEINDDEAVIINTQKNQNDAIVETILLCDALR 74 (155)
T ss_dssp EECTTCCEEEEE------CSCCCSSEEEEECCCSSHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCcceee------ccccCCceeEEEecccccchHHHHHHHHHHHHH
Confidence 679999874322 147999999999876332256777888888764
No 5
>d2c4ka1 c.61.1.2 (A:7-166) PRPP synthetase-associated protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.52 E-value=2e+02 Score=24.52 Aligned_cols=47 Identities=15% Similarity=0.087 Sum_probs=33.2
Q ss_pred CCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCC-chhHHHHHHHHHHHHHH
Q psy5575 18 GVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETY-CSNIGRLISEVDAIIMR 70 (668)
Q Consensus 18 G~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~Epg-Ce~I~~LIS~mD~LI~~ 70 (668)
.+|.||.+--.- ..+|||+.+.-|...-+. ..++--|+-++|++-..
T Consensus 34 ~~F~DGE~~v~i------~e~vrg~~V~ivqs~~~~~n~~lmeLll~~da~k~~ 81 (160)
T d2c4ka1 34 YQETNGETRVEI------KESVRGQDIFIIQTIPRDVNTAVMELLIMAYALKTA 81 (160)
T ss_dssp EECTTSCEEEEE------CSCCTTCCEEEECCCCSCHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCeeecc------CccccCCceEEEeccCcchHHHHHHHHHHHHHHHHh
Confidence 679999875422 147999999999776544 36677777777777543
No 6
>d1dkua1 c.61.1.2 (A:8-166) Phosphoribosylpyrophosphate synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=6.15 E-value=2.4e+02 Score=24.09 Aligned_cols=47 Identities=28% Similarity=0.285 Sum_probs=34.2
Q ss_pred CCCCCCeeecCCCCCCcCCCCccCceeEEecCCCCC-chhHHHHHHHHHHHHHH
Q psy5575 18 GVFKDGQLVSNKSTNKQDLKTIRGDQITWIDGRETY-CSNIGRLISEVDAIIMR 70 (668)
Q Consensus 18 G~FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~Epg-Ce~I~~LIS~mD~LI~~ 70 (668)
++|.||.+--.= ..+|||..+.-|...-+. +.++=-|+-++|++-..
T Consensus 31 ~~FpDGE~~v~i------~~~vrg~dv~ivqs~~~~~nd~lmelll~~~a~k~~ 78 (159)
T d1dkua1 31 TRFSDGEVQINI------EESIRGCDCYIIQSTSDPVNEHIMELLIMVDALKRA 78 (159)
T ss_dssp EECTTSCEEEEE------CSCCTTCEEEEECCCCSSHHHHHHHHHHHHHHHHHT
T ss_pred EEcCCCCEEEEe------ecCCCCCceEEEecCCCCcHHHHHHHHHHHHHHHHc
Confidence 679999975422 247999999999876544 57777777788877643
No 7
>d2csba1 a.60.2.4 (A:351-409) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=5.24 E-value=1e+02 Score=23.01 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=12.3
Q ss_pred HHHHHhhhcCCCCC
Q psy5575 8 LHEVLGMYHSGVFK 21 (668)
Q Consensus 8 L~EVk~LY~sG~Ft 21 (668)
|+|+..||..|++.
T Consensus 35 leeiermyeegrls 48 (59)
T d2csba1 35 LEEIERMYEEGRLS 48 (59)
T ss_dssp HHHHHHHHHHTSSC
T ss_pred HHHHHHHHHccccc
Confidence 68999999999875
No 8
>d1p9ka_ d.66.1.6 (A:) Hypothetical protein YbcJ {Escherichia coli [TaxId: 562]}
Probab=5.09 E-value=60 Score=25.06 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=21.5
Q ss_pred HHhhhcCCC-CCCCeeecCCCCCCcCCCCccCceeEEecCC
Q psy5575 11 VLGMYHSGV-FKDGQLVSNKSTNKQDLKTIRGDQITWIDGR 50 (668)
Q Consensus 11 Vk~LY~sG~-FtDGQLVsqk~~s~~~~k~IRGDkItWvdG~ 50 (668)
.+.|-..|. ..+|++|...+ ..|..+.+.||||.
T Consensus 39 Ak~lI~~G~V~VNG~~~~~p~------~~V~~~d~I~vdG~ 73 (79)
T d1p9ka_ 39 AKIAIAEGQVKVDGAVETRKR------CKIVAGQTVSFAGH 73 (79)
T ss_dssp TSHHHHHHHHEETTBCCCCSS------CCCCSSEEEEETTE
T ss_pred HHHHHHhCCcccCCEEecccc------ccCCCCCEEEECCE
Confidence 445555554 67888876432 45665667789985
No 9
>d1wpxa1 c.69.1.5 (A:1-421) Serine carboxypeptidase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.05 E-value=1.5e+02 Score=27.66 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=0.0
Q ss_pred eEEecCCCCCchhHHHHH
Q psy5575 44 ITWIDGRETYCSNIGRLI 61 (668)
Q Consensus 44 ItWvdG~EpgCe~I~~LI 61 (668)
|-|+.|. |||.++.-++
T Consensus 47 ~~WlnGG-PG~SS~~g~~ 63 (421)
T d1wpxa1 47 ILWLNGG-PGCSSLTGLF 63 (421)
T ss_dssp EEEECCT-TTBCTHHHHH
T ss_pred EEEECCC-CcHHHHHHHH
No 10
>d1k3ra2 c.116.1.2 (A:1-92,A:164-262) Hypothetical protein MTH1 (MT0001), dimerisation domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=4.96 E-value=1.7e+02 Score=26.26 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred ceeEEe-cCCCCCchhHHHHHHHHHH
Q psy5575 42 DQITWI-DGRETYCSNIGRLISEVDA 66 (668)
Q Consensus 42 DkItWv-dG~EpgCe~I~~LIS~mD~ 66 (668)
|.|.|+ ||.+.+|.-++.++..+++
T Consensus 41 deivv~dd~~~~~~~~l~~iL~Ylet 66 (191)
T d1k3ra2 41 KRIVIYHDDADGEARFIRDILTYMDT 66 (191)
T ss_dssp CEEEEEECSSCCCHHHHHHHHHHHHS
T ss_pred cEEEEEcCCCccHhHHHHHHHHHHcC
Done!